Citrus Sinensis ID: 018697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK
Secondary Structure (PSIPRED)
cccccccEEEEccccEEEEEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEEEcccccccccccccEEEEEEccccccEEEEEEEccccccEEEEEcccEEEEEEcccccccEEEEEcccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccEEEcccEEEEEEccccccEEEEEEccccEEEEEccccccccEEcccccccEEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcHHHHHHHHcccccccccEEEEEcccEccccccccEEEEccccccEEEEEEEcccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccccccccccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEccccccccccccEEEcccccEEEEEEEccccccEEEEEcccEEEEEEccccccEEEccccEEEEEEEcccccEEEEEEccccEEEEEEcccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEccccccccccccccccccccccccHEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mqggssgigyglKYQARCISdvkadtdhtsfltgtlslkeenEVHLLRLssggteliceglfshpneiwdlsscpfdqrIFSTVFSTGESYGAAIWQipelygqlnspqLERIAALDAHVGKINCVLWWssgrhdklvsidEENIFLWSLDcsnknaqvqskqssgmlhylsggawdphdvnAVAATCESSVQFWDLrsmgktnsiehahvrnvdydtkkKHLLVTAADESGIHLWDLRmlkapiqelpghthwtwavccnpeydgfilsagtdstVNLWLVStsnhdelpseslvespnQRANSLLNsysdyedsvyglawssrepwifaslsydgrvvvesvkpflsrk
Flexible Loop (DISEMBL)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLtgtlslkeenEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELpseslvespNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK
Low Complexity Region (SEG)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK
Disordered region (IsUnstruct)
*******IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN***********GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS*************************SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV*******
Disordered Region (DISOPRED)
*****SG**YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY**********IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK*********SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS****************RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP*****
Disordered Region (DISEMBL)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN*********GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN****************ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK
Disordered Region (DISPRO)
****SSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS****************RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q6NPN9	350	WD repeat-containing prot	no	no	0.997	1.0	0.783	1e-162
Q5XJP1	387	Protein TSSC1 OS=Danio re	yes	no	0.974	0.883	0.336	2e-51
Q5PPK9	386	Protein TSSC1 OS=Rattus n	yes	no	0.968	0.880	0.32	3e-49
Q3KPT3	387	Protein TSSC1 OS=Xenopus	N/A	no	0.962	0.873	0.314	3e-49
Q8K0G5	386	Protein TSSC1 OS=Mus musc	yes	no	0.968	0.880	0.314	8e-49
Q6DUZ9	387	Protein TSSC1 OS=Gecko ja	N/A	no	0.960	0.870	0.329	9e-49
Q53HC9	387	Protein TSSC1 OS=Homo sap	yes	no	0.960	0.870	0.332	4e-48
Q5M8I4	387	Protein TSSC1 OS=Xenopus	yes	no	0.960	0.870	0.319	7e-48
Q4R571	387	Protein TSSC1 OS=Macaca f	N/A	no	0.960	0.870	0.327	5e-47
Q86A97	400	Protein tssc1 homolog OS=	yes	no	0.928	0.815	0.306	4e-46

>sp|Q6NPN9|DWA2_ARATH WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1

 Score =  571 bits (1471), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/351 (78%), Positives = 306/351 (87%), Gaps = 1/351 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKAD DHTSFLTGTLSLKEENEVHLLRLSSGG+EL+CEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+S PFDQRIFSTVFSTG+SYGAAIWQIPE YGQ NS  LE +A+LDAHV
Sbjct: 61  LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLW  SG  DKL+S+DE+N+  WSLD S K+A+V SK+S+GM H LSGGAW+PHD
Sbjct: 121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VAAT ESS+QFWDLR+M K NSIE AHVRNVDY+ K++H+LV+A DESGIHLWDLR 
Sbjct: 181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEY+  ILS GTDS VNLW  S S+  +  SES VE+  
Sbjct: 241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKT-SESPVEASR 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           QR N LLNSY+DYEDSVYGLAWSSREPWIFASLSYDGRVV+ESVKPFL R+
Sbjct: 300 QRVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVVIESVKPFLPRR 350

Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling. May function as the substrate recognition module within this complex leading to ABI5 degradation. Functionally redundant with DWA1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XJP1|TSSC1_DANRE Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 211/380 (55%), Gaps = 38/380 (10%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY---------GQLNSPQ-LERI 113
           IW +S  P D+ + +T ++ T ES     AA+W++P  +            N+PQ LE +
Sbjct: 67  IWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMPPEWESGNHESPDDSSNNPQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGML 168
             LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L
Sbjct: 127 CHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 KF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVS 283
            +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L+A +DS V L  +VS
Sbjct: 245 ASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTASSDSRVILSNMVS 304

Query: 284 TS--------NHDEL--PSESLVESPNQRA--NSLLNSYSDYEDSVYGLAWSSREPWIFA 331
            S        + D+L  P E+  E   +    +S++++Y ++EDSVY + WS+ +PW+FA
Sbjct: 305 ISSEPFGHLVDDDDLSDPEENQQEDKGKEPLQDSIISTYEEHEDSVYAVEWSAADPWLFA 364

Query: 332 SLSYDGRVVVESVKPFLSRK 351
           SLSYDGR+V+  V   L  +
Sbjct: 365 SLSYDGRLVINRVPRALKYR 384

Danio rerio (taxid: 7955)

>sp|Q5PPK9|TSSC1_RAT Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 201/375 (53%), Gaps = 35/375 (9%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP+        LE +
Sbjct: 67  IWHISASPADKGVLATCYNKTSDSRVQACAAVWRMPKELESGSHESPEDPASTAQTLELL 126

Query: 114 AALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLH 169
             LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L 
Sbjct: 127 CHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLK 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 FTSG-RWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 STSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333
           S+     L  +  V  P +           ++++ +Y ++EDSVY + W+S +PW+FASL
Sbjct: 306 SSEPFGHLVDDDDVSDPEEHHTEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWLFASL 365

Query: 334 SYDGRVVVESVKPFL 348
           SYDGR+V+  V   L
Sbjct: 366 SYDGRLVINRVPRAL 380

Rattus norvegicus (taxid: 10116)

>sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 201/378 (53%), Gaps = 40/378 (10%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  E
Sbjct: 7   VIYGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS----TGESYGAAIWQIP-ELYG---------QLNSPQLERI 113
           IW + + P D+ + +T ++    +     AA+W+IP EL G           N+  LE +
Sbjct: 67  IWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIPKELQGGNHESPDDTSSNAQSLELL 126

Query: 114 AALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSKQSSGMLH 169
             LD+   G + CV W   G   KL+S+ +  + +W L      +  +   + +  G L 
Sbjct: 127 CHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLR 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + SG  W PH +   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 FTSG-KWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 ST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330
           S+            S+ ++ P E   + P Q  +S++ +Y ++EDSVY + WSS +PW+F
Sbjct: 306 SSEPFGHLVDDEDLSDQEDNPQEEKTKEPLQ--DSIIGTYEEHEDSVYAVEWSSADPWLF 363

Query: 331 ASLSYDGRVVVESVKPFL 348
           ASLSYDGR+V+  V   L
Sbjct: 364 ASLSYDGRLVINRVPRAL 381

Xenopus laevis (taxid: 8355)

>sp|Q8K0G5|TSSC1_MOUSE Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=2

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 200/375 (53%), Gaps = 35/375 (9%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELL 126

Query: 114 AALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLH 169
             LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L 
Sbjct: 127 CHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLK 186

Query: 170 YLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV 225
           + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L 
Sbjct: 187 F-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLA 245

Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWLV 282
           +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  +
Sbjct: 246 SCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSI 305

Query: 283 STSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333
           S+     L  +  +  P +           ++++ +Y ++EDSVY + W+S +PW+FASL
Sbjct: 306 SSEPFGHLVDDGDISDPEEHHAEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWLFASL 365

Query: 334 SYDGRVVVESVKPFL 348
           SYDGR+V+  V   L
Sbjct: 366 SYDGRLVINRVPRAL 380

Mus musculus (taxid: 10090)

>sp|Q6DUZ9|TSSC1_GECJA Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 205/379 (54%), Gaps = 42/379 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T +S T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADKGVLATCYSKTSDSKVMTCAAVWRMPKELESGSHESPDDSSSNAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGML 168
             LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L
Sbjct: 127 CHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + SG  W PH +   VA   +++++ WD+R+M +   IE AH   VR++D++  K++ L
Sbjct: 186 KFTSG-RWSPHHNCTQVATANDTAIRGWDIRTMSQIYCIESAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+A +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYNHSHDQLVLTASSDSRVILSNMVS 304

Query: 282 VST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+            S+ ++   E  ++ P Q  +S++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDEELSDQEDQHQEDKIKEPLQ--DSIIATYEEHEDSVYAVEWSSADPWL 362

Query: 330 FASLSYDGRVVVESVKPFL 348
           FASLSYDGR+V+  V   L
Sbjct: 363 FASLSYDGRLVINRVPRAL 381

Gecko japonicus (taxid: 146911)

>sp|Q53HC9|TSSC1_HUMAN Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 202/379 (53%), Gaps = 42/379 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGML 168
             LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L
Sbjct: 127 CHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + SG  W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 KFTSG-RWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VSTSNHDEL------------PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+     L             SE   + P Q  ++++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQ--DNVIATYEEHEDSVYAVDWSSADPWL 362

Query: 330 FASLSYDGRVVVESVKPFL 348
           FASLSYDGR+V+  V   L
Sbjct: 363 FASLSYDGRLVINRVPRAL 381

Homo sapiens (taxid: 9606)

>sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1

 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 201/379 (53%), Gaps = 42/379 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  E
Sbjct: 7   VIYGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERI 113
           IW +S+ P D+ + +T ++          AA+W+IP EL G           N+  LE +
Sbjct: 67  IWQISASPADRNVLATCYNKISDSKVLTCAAVWRIPKELQGGNHESPDDTSSNAQALELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSKQSSGML 168
             LD  AH G + CV W   G   KL+S+ +  + +W L      +  +   + +  G L
Sbjct: 127 CHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQL 185

Query: 169 HYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + S G W P H+   VA   +++++ WD+RSM +   IE+AH   VR++D++  K++ L
Sbjct: 186 RFTS-GKWSPHHNCTQVATANDTAIRGWDIRSMRQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VST------------SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+            S+ ++   E   + P Q  +S++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDEDLSDQEDNLQEEKTKEPLQ--DSVIATYEEHEDSVYAVEWSSADPWL 362

Query: 330 FASLSYDGRVVVESVKPFL 348
           FASLSYDGR+V+  V   L
Sbjct: 363 FASLSYDGRLVINRVPRAL 381

Xenopus tropicalis (taxid: 8364)

>sp|Q4R571|TSSC1_MACFA Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 201/379 (53%), Gaps = 42/379 (11%)

Query: 8   IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE 67
           + YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     E
Sbjct: 7   VIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGE 66

Query: 68  IWDLSSCPFDQRIFSTVFS-TGESY---GAAIWQIPELY--GQLNSPQ--------LERI 113
           IW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +
Sbjct: 67  IWHISASPADRGVLATCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELL 126

Query: 114 AALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGML 168
             LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L
Sbjct: 127 CHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQL 185

Query: 169 HYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
            + SG  W PH +   VA   +++++ WD R+M +   IE+AH   VR++D++  K++ L
Sbjct: 186 KFTSG-RWSPHHNCTQVATANDTTLRGWDTRTMSQIYCIENAHGQLVRDLDFNPNKQYYL 244

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---NLWL 281
            +  D+  +  WD R +  P++ L  H+HW W V  N  +D  +L+  +DS V   N+  
Sbjct: 245 ASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVS 304

Query: 282 VSTSNHDEL------------PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329
           +S+     L             SE   + P Q  ++++ +Y ++EDSVY + WSS +PW+
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQ--DNVIATYEEHEDSVYAVDWSSADPWL 362

Query: 330 FASLSYDGRVVVESVKPFL 348
           FASLSYDGR+V+  V   L
Sbjct: 363 FASLSYDGRLVINRVPRAL 381

Macaca fascicularis (taxid: 9541)

>sp|Q86A97|TSSC1_DICDI Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 198/385 (51%), Gaps = 59/385 (15%)

Query: 10  YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW 69
           YGL  + R +S + A+ D   FL GT +L+EENE+ LL  +  G  + C  +F HP EI 
Sbjct: 14  YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLE-AKEGEGVRCLSIFPHPKEIH 72

Query: 70  DLSSCPFDQRIFSTVFSTGES----------------------YGAAIWQIPELYGQLNS 107
            ++SCPFD  +F +V++T                         + +++W+I E     + 
Sbjct: 73  SITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDFKSSLWRINE-----SM 127

Query: 108 PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167
             +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS    ++N     KQ  G 
Sbjct: 128 DSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWS-KIDDQNEPTVIKQF-GN 185

Query: 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224
           L  LS G+ +P+  N +A   + +++ WD R+  +T S++ AH   +R++D++  K + L
Sbjct: 186 LSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFSMDKAHSEQIRDIDFNPNKPYYL 245

Query: 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVS 283
           ++A D+  + +WD R  + P++   GH HW W+   N  +D  I+++ +D+TV LW L S
Sbjct: 246 LSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNRYHDQLIITSSSDNTVKLWNLYS 305

Query: 284 TSNHDELPSESLVESPNQRA------------------------NSLLNSYSDYEDSVYG 319
            S+     +     +  Q +                        + L+ +Y ++EDSVY 
Sbjct: 306 LSSAFNSENNISNSNEQQHSQQPNEQQPQQPPQPVKQKKNKRNEDQLIKTYEEHEDSVYN 365

Query: 320 LAWSSREPWIFASLSYDGRVVVESV 344
           ++WSS   ++FASLSYDGR VV +V
Sbjct: 366 ISWSSSN-FLFASLSYDGRFVVNNV 389

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
224086020	351	predicted protein [Populus trichocarpa]	1.0	1.0	0.849	1e-178
224061895	352	predicted protein [Populus trichocarpa]	1.0	0.997	0.823	1e-175
297845020	351	transducin family protein [Arabidopsis l	0.997	0.997	0.842	1e-175
22329691	351	transducin/WD-40 repeat-containing prote	0.997	0.997	0.84	1e-175
302141668	350	unnamed protein product [Vitis vinifera]	0.997	1.0	0.837	1e-174
359492258	351	PREDICTED: WD repeat-containing protein	0.997	0.997	0.835	1e-173
8778614	388	F5M15.14 [Arabidopsis thaliana]	1.0	0.904	0.807	1e-168
449452963	357	PREDICTED: WD repeat-containing protein	0.994	0.977	0.806	1e-165
356508796	350	PREDICTED: WD repeat-containing protein	0.997	1.0	0.783	1e-162
51970962	350	putative WD-repeat protein [Arabidopsis	0.997	1.0	0.786	1e-161

>gi|224086020|ref|XP_002307781.1| predicted protein [Populus trichocarpa] gi|222857230|gb|EEE94777.1| predicted protein [Populus trichocarpa]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/351 (84%), Positives = 323/351 (92%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKADTDHTSF+TGTLSL+EENEVHLLRLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDLSSCPFDQRIFSTVFSTGES+GAA+WQIPELYGQLNSPQLERIA+LD HV
Sbjct: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESFGAAVWQIPELYGQLNSPQLERIASLDGHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GK+NC+LWW SGR+DKL+SIDEEN+FLWSLDCS K AQVQSK+S+GMLHYLSGGAWDPHD
Sbjct: 121 GKVNCILWWPSGRNDKLISIDEENLFLWSLDCSRKAAQVQSKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAATCESSVQFWDLR+M KT+SIE  HVRNVDYDT+K H+LVTA DESGIH+WDLRM
Sbjct: 181 VNAVAATCESSVQFWDLRTMKKTSSIECGHVRNVDYDTRKMHILVTAEDESGIHIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PI EL GH+HWTWAV CNPEYDG ILS GTDSTVNLW  ST+  DEL S S+V SP 
Sbjct: 241 PKVPINELRGHSHWTWAVTCNPEYDGLILSGGTDSTVNLWFASTTTSDELTSGSVVASPT 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           Q+ + LL S++DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP+L RK
Sbjct: 301 QKLDPLLYSFNDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPYLPRK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061895|ref|XP_002300652.1| predicted protein [Populus trichocarpa] gi|222842378|gb|EEE79925.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 290/352 (82%), Positives = 326/352 (92%), Gaps = 1/352 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGS+GIGYGLKYQARCISDVKADTDHTSF+TGTLSL+EENEVHLLRLS+GGTELICEG
Sbjct: 1   MQGGSTGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSAGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHP EIW+LSSCPFDQR+FSTVFS+GES+GAA+WQIPELYGQLNSPQLERIA+LD HV
Sbjct: 61  LFSHPEEIWNLSSCPFDQRVFSTVFSSGESFGAAVWQIPELYGQLNSPQLERIASLDGHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GK+NCVLWW SGR+DKL+SID+ENIFLWSLDCS + AQVQSK+S+GMLHYLSGGAWDPHD
Sbjct: 121 GKLNCVLWWPSGRNDKLISIDQENIFLWSLDCSRQAAQVQSKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAATCESSVQFWDLR+M KTNSIE  HVRNVDYDT+KKH+LVTA DESGIH+WDLRM
Sbjct: 181 VNAVAATCESSVQFWDLRAMKKTNSIECGHVRNVDYDTRKKHILVTAEDESGIHIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P++EL GH+HWTWAV CNPEYDG ILS G+DSTVNLW  ST+  DEL SES+ +SP 
Sbjct: 241 PKVPVKELRGHSHWTWAVACNPEYDGLILSGGSDSTVNLWFASTTTSDELTSESVFKSPT 300

Query: 301 QRANS-LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           +  +S LLNS+SDY+DSVYGLAWSS+EPWIFASLSYDGRVVVES+KP+L +K
Sbjct: 301 RELDSMLLNSFSDYDDSVYGLAWSSQEPWIFASLSYDGRVVVESIKPYLPKK 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845020|ref|XP_002890391.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336233|gb|EFH66650.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/350 (84%), Positives = 319/350 (91%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct: 61  LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLWW SGR DKL+SIDE+N+FLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct: 121 GKINCVLWWPSGRCDKLISIDEQNLFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAAT ESSVQFWDLR+M K  SIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct: 181 VNAVAATGESSVQFWDLRTMKKVKSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S S+ D+  SES VES  
Sbjct: 241 AKVPVQELPGHTHWTWAVKCNPEYDGLILSAGTDSAVNLWFASASSSDDKTSESPVESTR 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350
           QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRVV+ESVKPFL R
Sbjct: 301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVVIESVKPFLPR 350

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329691|ref|NP_173478.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|20260516|gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gi|23198164|gb|AAN15609.1| unknown protein [Arabidopsis thaliana] gi|332191863|gb|AEE29984.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/350 (84%), Positives = 320/350 (91%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct: 1   MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct: 61  LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct: 121 GKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct: 181 VNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SES VES  
Sbjct: 241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTR 300

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350
           QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV++ESVKPFL R
Sbjct: 301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVIIESVKPFLPR 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141668|emb|CBI18871.3| unnamed protein product [Vitis vinifera]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 294/351 (83%), Positives = 324/351 (92%), Gaps = 1/351 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLKEENEVHL+RLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKEENEVHLIRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCP+DQR+FSTVFS+GESYGAA+WQIPELYGQLNSPQLERIA LDAH 
Sbjct: 61  LFSHPNEIWDLASCPYDQRVFSTVFSSGESYGAAVWQIPELYGQLNSPQLERIAVLDAHA 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KI C+LWW SGRHDKLVSID+EN+FLWSLD S K AQV SK+S+GMLHYLSGGAWDPHD
Sbjct: 121 CKIKCILWWPSGRHDKLVSIDDENLFLWSLDSSRKAAQVISKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VA+TCE S+QFWDLR+M KTNSIEHAHVRNVDYDTKKKH+LVTA DESGI +WDLRM
Sbjct: 181 VNSVASTCEWSIQFWDLRTMKKTNSIEHAHVRNVDYDTKKKHILVTAEDESGICIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PI+ELPGHTHWTW V CNPEY G ILSAGTDS+VNLWL S S++D+L SES +ESP 
Sbjct: 241 PKVPIKELPGHTHWTWTVKCNPEY-GLILSAGTDSSVNLWLASMSSNDDLTSESPIESPT 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           ++ + LLNSYSDYEDSVYGLAWSSREP IFASLSYDGRVVVESVKP+LS+K
Sbjct: 300 RQVDPLLNSYSDYEDSVYGLAWSSREPSIFASLSYDGRVVVESVKPYLSKK 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492258|ref|XP_002285928.2| PREDICTED: WD repeat-containing protein DWA2 [Vitis vinifera]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/352 (83%), Positives = 324/352 (92%), Gaps = 2/352 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLKEENEVHL+RLSSGGTELICEG
Sbjct: 1   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKEENEVHLIRLSSGGTELICEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCP+DQR+FSTVFS+GESYGAA+WQIPELYGQLNSPQLERIA LDAH 
Sbjct: 61  LFSHPNEIWDLASCPYDQRVFSTVFSSGESYGAAVWQIPELYGQLNSPQLERIAVLDAHA 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KI C+LWW SGRHDKLVSID+EN+FLWSLD S K AQV SK+S+GMLHYLSGGAWDPHD
Sbjct: 121 CKIKCILWWPSGRHDKLVSIDDENLFLWSLDSSRKAAQVISKESAGMLHYLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VA+TCE S+QFWDLR+M KTNSIEHAHVRNVDYDTKKKH+LVTA DESGI +WDLRM
Sbjct: 181 VNSVASTCEWSIQFWDLRTMKKTNSIEHAHVRNVDYDTKKKHILVTAEDESGICIWDLRM 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESP 299
            K PI+ELPGHTHWTW V CNPEY G ILSAGTDS+VNLWL S S++D+L SE S +ESP
Sbjct: 241 PKVPIKELPGHTHWTWTVKCNPEY-GLILSAGTDSSVNLWLASMSSNDDLTSESSPIESP 299

Query: 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
            ++ + LLNSYSDYEDSVYGLAWSSREP IFASLSYDGRVVVESVKP+LS+K
Sbjct: 300 TRQVDPLLNSYSDYEDSVYGLAWSSREPSIFASLSYDGRVVVESVKPYLSKK 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778614|gb|AAF79622.1|AC027665_23 F5M15.14 [Arabidopsis thaliana]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/358 (80%), Positives = 315/358 (87%), Gaps = 7/358 (1%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEV-------HLLRLSSGG 53
           MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEV       HLLRLSSGG
Sbjct: 29  MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVNPYAFKVHLLRLSSGG 88

Query: 54  TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI 113
           +ELICEGLFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+
Sbjct: 89  SELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERV 148

Query: 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173
           A+LDAHVGKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSG
Sbjct: 149 ASLDAHVGKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSG 208

Query: 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGI 233
           GAWDPHDVNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGI
Sbjct: 209 GAWDPHDVNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGI 268

Query: 234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293
           H+WDLR  K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SE
Sbjct: 269 HVWDLRKAKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSE 328

Query: 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           S VES  QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV   S+   LS +
Sbjct: 329 SPVESTRQRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVSKLSLPHILSTR 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452963|ref|XP_004144228.1| PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus] gi|449489307|ref|XP_004158274.1| PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/351 (80%), Positives = 313/351 (89%), Gaps = 2/351 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCI+DVKADTDHTSF+TGTLSLK+ENEVHL+RLSS G+ELICEG
Sbjct: 8   MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEG 67

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+SCPF+QRIFSTVFSTGE++GAAIWQIPELYG+LNSPQLER+ +LD H 
Sbjct: 68  LFSHPNEIWDLASCPFEQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHA 127

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
            KINCV+WW SGRHDKL+SIDEENIFLWSLDCS K AQVQSK+S+GMLHY SGG WDPHD
Sbjct: 128 SKINCVIWWPSGRHDKLISIDEENIFLWSLDCSRKTAQVQSKESAGMLHYFSGGTWDPHD 187

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLR 239
            NA+AAT ESSVQFWDLR+M KT+SI   A+VRNVDY+ KKKHLLVTA DE+GI +WDLR
Sbjct: 188 SNAIAATSESSVQFWDLRTMKKTDSIACSAYVRNVDYNPKKKHLLVTAEDETGISIWDLR 247

Query: 240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299
             K PIQ+LPGHTHWT AV CNPEYDG ILSAGTDS VNLWL S S+ DE  SE  V+S 
Sbjct: 248 RPKVPIQQLPGHTHWTSAVRCNPEYDGLILSAGTDSAVNLWLASMSD-DEPKSERKVDSS 306

Query: 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350
            ++ + LL+SYSDYEDSVYGLAWS REPWIFASLSYDGRVVVESVKPFLSR
Sbjct: 307 PRQCDPLLHSYSDYEDSVYGLAWSFREPWIFASLSYDGRVVVESVKPFLSR 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508796|ref|XP_003523140.1| PREDICTED: WD repeat-containing protein DWA2-like [Glycine max]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/351 (78%), Positives = 307/351 (87%), Gaps = 1/351 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQ  SSGIGYGLKYQARCISDVKADTDHTSFL GTLSLKEENEVHL+RLSS GTEL CEG
Sbjct: 1   MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL SCPFDQRIFSTV+S GE+YGAAIWQIPELYG+LNSPQLERI +LD   
Sbjct: 61  LFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDS 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKI C+LWW SGRHDKL+SI+EEN++LW+LD S K AQVQS+ S+GMLH LSGGAWDPHD
Sbjct: 121 GKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           V++VAATCES +QFWD+R+M KT SIE +HV +VDY  +K+H+LVTA  ESGIH+WDLR 
Sbjct: 181 VSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K PIQELPGHTHWTW V CNPEYDG ILSAGTDSTVNLWL ST NHDEL +E  V+S  
Sbjct: 241 PKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLAST-NHDELTTERQVDSSA 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           +  + LLN+YSDYEDS+YGL WSSREPWIFASLSYDGRVVVESVKPF+S+K
Sbjct: 300 RWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970962|dbj|BAD44173.1| putative WD-repeat protein [Arabidopsis thaliana]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/351 (78%), Positives = 306/351 (87%), Gaps = 1/351 (0%)

Query: 1   MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
           MQGGSSGIGYGLKYQARCISDVKAD DHTSFLTGTLSLKEENEVHLLRLSSGG+EL+CEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           LFSHPNEIWDL+S PFDQRIFSTVFSTG+SYGAAIWQIPE YGQ NS  LE +A+LDAHV
Sbjct: 61  LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
           GKINCVLW  SG  DKL+S+DE+N+  WSLD S K+A+V SK+S+GM H LSGGAW+PHD
Sbjct: 121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
           VN+VAAT ESS+QFWDLR+M K NSIE AHVRNVDYD K++H+LV+A DESGIHLWDLR 
Sbjct: 181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYDLKREHILVSADDESGIHLWDLRK 240

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K P+QELPGHTHWTWAV CNPEY+  ILS GTDS VNLW  S S+  +  SES VE+  
Sbjct: 241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKT-SESPVEASR 299

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
           QR N LLNSY+DYEDSVYGLAWSSREPWIFASLSYDGRVV+ESVKPFL R+
Sbjct: 300 QRVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVVIESVKPFLPRR 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2030387	351	AT1G20540 "AT1G20540" [Arabido	0.997	0.997	0.84	3.8e-165
TAIR|locus:2014629	350	DWA2 "AT1G76260" [Arabidopsis	0.997	1.0	0.783	1.1e-151
ZFIN|ZDB-GENE-041010-167	387	tssc1 "tumor suppressing subtr	0.675	0.612	0.362	4.2e-40
MGI|MGI:1289332	386	Tssc1 "tumor suppressing subtr	0.666	0.606	0.321	2.1e-36
DICTYBASE|DDB_G0274279	400	tssc1 "WD40 repeat-containing	0.601	0.527	0.299	3.2e-26
DICTYBASE|DDB_G0278285	1005	copB2 "coatomer protein comple	0.638	0.222	0.285	5.6e-13
UNIPROTKB|E9PC52	416	RBBP7 "Histone-binding protein	0.783	0.661	0.233	8.2e-13
UNIPROTKB|K7GRD3	416	LOC100519001 "Uncharacterized	0.783	0.661	0.233	8.2e-13
UNIPROTKB|Q3SWX8	425	RBBP7 "Histone-binding protein	0.584	0.482	0.237	2.5e-12
UNIPROTKB|E2RM49	425	RBBP7 "Uncharacterized protein	0.584	0.482	0.237	2.5e-12

TAIR|locus:2030387 AT1G20540 "AT1G20540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
 Identities = 294/350 (84%), Positives = 320/350 (91%)

Query:     1 MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
             MQGGSSGIGYGLKYQ+RCISDVKADTD+TSFLTGTLSLKEENEVHLLRLSSGG+ELICEG
Sbjct:     1 MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query:    61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
             LFSHPNEIWDL+SCPFDQRIFSTVFSTGES+GAAIWQIPELYGQLNSPQLER+A+LDAHV
Sbjct:    61 LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query:   121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             GKINCVLWW SGR DKL+SIDE+NIFLWSLDCS K+A+V SK S+GMLH LSGGAWDPHD
Sbjct:   121 GKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query:   181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
             VNAVAAT ESSVQFWDLR+M K NSIEHAHVR VDY+ K++H+LVTA DESGIH+WDLR 
Sbjct:   181 VNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query:   241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
              K P+QELPGHTHWTWAV CNPEYDG ILSAGTDS VNLW  S ++ D+  SES VES  
Sbjct:   241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTR 300

Query:   301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 350
             QR N LLNSY+DYEDSVYGLAWSSREPW+FASLSYDGRV++ESVKPFL R
Sbjct:   301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVIIESVKPFLPR 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2014629 DWA2 "AT1G76260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 275/351 (78%), Positives = 306/351 (87%)

Query:     1 MQGGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG 60
             MQGGSSGIGYGLKYQARCISDVKAD DHTSFLTGTLSLKEENEVHLLRLSSGG+EL+CEG
Sbjct:     1 MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query:    61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
             LFSHPNEIWDL+S PFDQRIFSTVFSTG+SYGAAIWQIPE YGQ NS  LE +A+LDAHV
Sbjct:    61 LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query:   121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             GKINCVLW  SG  DKL+S+DE+N+  WSLD S K+A+V SK+S+GM H LSGGAW+PHD
Sbjct:   121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query:   181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
             VN+VAAT ESS+QFWDLR+M K NSIE AHVRNVDY+ K++H+LV+A DESGIHLWDLR 
Sbjct:   181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240

Query:   241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
              K P+QELPGHTHWTWAV CNPEY+  ILS GTDS VNLW  S S+  +  SES VE+  
Sbjct:   241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKT-SESPVEASR 299

Query:   301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK 351
             QR N LLNSY+DYEDSVYGLAWSSREPWIFASLSYDGRVV+ESVKPFL R+
Sbjct:   300 QRVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVVIESVKPFLPRR 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

ZFIN|ZDB-GENE-041010-167 tssc1 "tumor suppressing subtransferable candidate 1" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 95/262 (36%), Positives = 155/262 (59%)

Query:   106 NSPQ-LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK 162
             N+PQ LE +  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S 
Sbjct:   118 NNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSS 176

Query:   163 ---QSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215
                +  G L + + G W PH +   +A   +++++ WDLRSM +   IE+AH   VR++D
Sbjct:   177 ATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQIYCIENAHGQLVRDLD 235

Query:   216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275
             ++  K++ L +  D+  +  WD+R +  P++ L  H+HW W+V  N  +D  +L+A +DS
Sbjct:   236 FNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHSHWVWSVRYNHSHDQLLLTASSDS 295

Query:   276 TVNLW-LVSTSN----H----DEL--PSESLVESPNQRA--NSLLNSYSDYEDSVYGLAW 322
              V L  +VS S+    H    D+L  P E+  E   +    +S++++Y ++EDSVY + W
Sbjct:   296 RVILSNMVSISSEPFGHLVDDDDLSDPEENQQEDKGKEPLQDSIISTYEEHEDSVYAVEW 355

Query:   323 SSREPWIFASLSYDGRVVVESV 344
             S+ +PW+FASLSYDGR+V+  V
Sbjct:   356 SAADPWLFASLSYDGRLVINRV 377

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1289332 Tssc1 "tumor suppressing subtransferable candidate 1" [Mus musculus (taxid:10090)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 82/255 (32%), Positives = 140/255 (54%)

Query:   110 LERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSS 165
             LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  
Sbjct:   123 LELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGR 182

Query:   166 GMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK 221
             G L + + G W PH +   VA   +++++ WD RSM +   IE+AH   VR++D++  K+
Sbjct:   183 GQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQ 241

Query:   222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV---N 278
             + L +  D+  +  WD R +  P++ L  H+HW W+V  N  +D  +L+  +DS V   N
Sbjct:   242 YYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSN 301

Query:   279 LWLVSTSNHDELPSESLVESPNQR---------ANSLLNSYSDYEDSVYGLAWSSREPWI 329
             +  +S+     L  +  +  P +           ++++ +Y ++EDSVY + W+S +PW+
Sbjct:   302 MVSISSEPFGHLVDDGDISDPEEHHAEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWL 361

Query:   330 FASLSYDGRVVVESV 344
             FASLSYDGR+V+  V
Sbjct:   362 FASLSYDGRLVINRV 376

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0274279 tssc1 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 67/224 (29%), Positives = 126/224 (56%)

Query:    86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145
             +    + +++W+I E    ++S  +E +  L  H G I  +L   SG ++ ++S+D+ NI
Sbjct:   111 TNNNDFKSSLWRINE---SMDS--IEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNI 165

Query:   146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205
              LWS    ++N     KQ  G L  LS G+ +P+  N +A   + +++ WD R+  +T S
Sbjct:   166 RLWS-KIDDQNEPTVIKQF-GNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFS 223

Query:   206 IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262
             ++ AH   +R++D++  K + L++A D+  + +WD R  + P++   GH HW W+   N 
Sbjct:   224 MDKAHSEQIRDIDFNPNKPYYLLSAGDDCKLKIWDTRQTRDPVKIFSGHNHWIWSAKFNR 283

Query:   263 EYDGFILSAGTDSTVNLW-LVSTSNHDELPSESLVESPNQRANS 305
              +D  I+++ +D+TV LW L S S+     SE+ + + N++ +S
Sbjct:   284 YHDQLIITSSSDNTVKLWNLYSLSS--AFNSENNISNSNEQQHS 325

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0278285 copB2 "coatomer protein complex beta 2 subunit (beta prime)" [Dictyostelium discoideum (taxid:44689)]

 Score = 206 (77.6 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
 Identities = 69/242 (28%), Positives = 115/242 (47%)

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165
             N   +E+I + +AH   I C++   +  +  L S D+  I LW  +    N QV      
Sbjct:    86 NYNTMEKIKSFEAHADYIRCIIVHPTLPYI-LSSSDDMFIKLWDYEKGWSNTQV----FE 140

Query:   166 GMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTK-KK 221
             G  HY+   AW+P D N  A A+ + +V+ W + S     ++E H   + +V+Y +  +K
Sbjct:   141 GHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEK 200

Query:   222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281
               L++ AD+  + +WD +  K  +Q L GH++    VC +PE    ILS   D TV LW 
Sbjct:   201 PYLISGADDKLVKIWDYQS-KTCVQTLEGHSNNVSVVCYHPELP-LILSGSEDGTVKLWH 258

Query:   282 VSTSNHDELPSESL--VESPN-QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338
              ST   +   +  +  V S N  R ++ +     Y+D    L     +P +  S+   G+
Sbjct:   259 SSTYRLERTLNYGMGFVWSMNFLRGSNFIGL--GYDDGTVVLKIGKNKPPV--SMDQGGK 314

Query:   339 VV 340
             V+
Sbjct:   315 VI 316

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E9PC52 RBBP7 "Histone-binding protein RBBP7" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 70/300 (23%), Positives = 127/300 (42%)

Query:    50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE----SYGAAIWQIPELYGQL 105
             S  G ++ CE   +H  E+      P +  I +T   + +     Y     + P+  G+ 
Sbjct:    99 SDKGGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAK-PDPSGEC 157

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS 164
             N P L     L  H  K    L W+S     L+S  D+  + LW ++   K  ++   ++
Sbjct:   158 N-PDLR----LRGHQ-KEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 211

Query:   165 --SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---Y 216
               +G    +   AW   H+    +   +  +  WD RS    K + +  AH   V+   +
Sbjct:   212 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 271

Query:   217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276
             +   + +L T + +  + LWDLR LK  +     H    + V  +P  +  + S+GTD  
Sbjct:   272 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 331

Query:   277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
             +N+W +S    +E  +E   + P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   332 LNVWDLSKIG-EEQSAEDAEDGPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 386

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GRD3 LOC100519001 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 70/300 (23%), Positives = 127/300 (42%)

Query:    50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE----SYGAAIWQIPELYGQL 105
             S  G ++ CE   +H  E+      P +  I +T   + +     Y     + P+  G+ 
Sbjct:    99 SEKGGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAK-PDPSGEC 157

Query:   106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS 164
             N P L     L  H  K    L W+S     L+S  D+  + LW ++   K  ++   ++
Sbjct:   158 N-PDLR----LRGHQ-KEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKA 211

Query:   165 --SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---Y 216
               +G    +   AW   H+    +   +  +  WD RS    K + +  AH   V+   +
Sbjct:   212 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 271

Query:   217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276
             +   + +L T + +  + LWDLR LK  +     H    + V  +P  +  + S+GTD  
Sbjct:   272 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 331

Query:   277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
             +N+W +S    +E  +E   + P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   332 LNVWDLSKIG-EEQSAEDAEDGPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 386

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3SWX8 RBBP7 "Histone-binding protein RBBP7" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 52/219 (23%), Positives = 98/219 (44%)

Query:   127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
             L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct:   182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query:   183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
               +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct:   242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query:   238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
             LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S    +E  +E   +
Sbjct:   302 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAED 360

Query:   298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
              P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   361 GPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 395

GO:0016581 "NuRD complex" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0070370 "cellular heat acclimation" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2RM49 RBBP7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 52/219 (23%), Positives = 98/219 (44%)

Query:   127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
             L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct:   182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query:   183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
               +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct:   242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query:   238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
             LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S    +E  +E   +
Sbjct:   302 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAED 360

Query:   298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
              P +    LL  +  +   +   +W+  EPW+  S+S D
Sbjct:   361 GPPE----LLFIHGGHTAKISDFSWNPNEPWVICSVSED 395

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M8I4	TSSC1_XENTR	No assigned EC number	0.3192	0.9601	0.8708	yes	no
Q5RE10	TSSC1_PONAB	No assigned EC number	0.3103	0.9601	0.8140	yes	no
Q6NPN9	DWA2_ARATH	No assigned EC number	0.7834	0.9971	1.0	no	no
Q5PPK9	TSSC1_RAT	No assigned EC number	0.32	0.9686	0.8808	yes	no
Q86A97	TSSC1_DICDI	No assigned EC number	0.3064	0.9287	0.815	yes	no
Q5XJP1	TSSC1_DANRE	No assigned EC number	0.3368	0.9743	0.8837	yes	no
Q8K0G5	TSSC1_MOUSE	No assigned EC number	0.3146	0.9686	0.8808	yes	no
Q53HC9	TSSC1_HUMAN	No assigned EC number	0.3324	0.9601	0.8708	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.0 bits (167), Expect = 6e-13
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 25/237 (10%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           + I  L+ H   +  + +   G+     S  +  I LW L  + K     +  +      
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTD----P 200

Query: 171 LSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAHVRNVDYD-TKKKHLLVTAA 228
           +S  A+ P     +A  + + +++ WDL +     S    H  +V    +    LL + +
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288
            +  I LWDLR   + ++ L GH+    +V  +P+    + S  +D TV LW + T    
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL- 318

Query: 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK 345
                               +   +E  V  L++S     + +  S DG + +  ++
Sbjct: 319 ----------------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 52/279 (18%), Positives = 102/279 (36%), Gaps = 46/279 (16%)

Query: 64  HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI 123
           H   + D+++      +     S        +W         +    E +  L  H   +
Sbjct: 50  HTGPVRDVAASADGTYL----ASGSSDKTIRLW---------DLETGECVRTLTGHTSYV 96

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183
           + V  +S        S  ++ I +W ++       ++              A+ P     
Sbjct: 97  SSVA-FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-----SVAFSPDGTFV 150

Query: 184 VAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
            +++ + +++ WDLR+     ++   H   V +V +    + LL +++D   I LWDL  
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD-GTIKLWDLST 208

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300
            K  +  L GH +   +V  +P+    + S   D T+ +W                   +
Sbjct: 209 GKC-LGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVW-------------------D 247

Query: 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339
            R    + + S + +SV  LAWS     + AS S DG +
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-09
 Identities = 54/314 (17%), Positives = 104/314 (33%), Gaps = 45/314 (14%)

Query: 42  NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101
             V L  LS+ G  +    L  H   +  L+  P  + + S     G      +W     
Sbjct: 134 GTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLDGTIK---LW----- 183

Query: 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS 161
               +    + ++ L  H   ++ + +   G         +  I LW L          S
Sbjct: 184 ----DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218
             S  ++      ++ P      + + + +++ WDLRS          H   V +V +  
Sbjct: 240 GHSDSVVS-----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 219 KKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277
             K LL + + +  + LWDL   K      L GH     ++  +P+    +     D T+
Sbjct: 295 DGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            LW + T    +                          +V  +++S  +  + +S S DG
Sbjct: 354 RLWDLRTGKPLKTLEGH--------------------SNVLSVSFSP-DGRVVSSGSTDG 392

Query: 338 RVVVESVKPFLSRK 351
            V +  +      +
Sbjct: 393 TVRLWDLSTGSLLR 406

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 55/268 (20%), Positives = 105/268 (39%), Gaps = 37/268 (13%)

Query: 18  CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD 77
            + DV A  D T   +G+     +  + L  L +G  E +   L  H + +  ++  P D
Sbjct: 53  PVRDVAASADGTYLASGS----SDKTIRLWDLETG--ECVRT-LTGHTSYVSSVAFSP-D 104

Query: 78  QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137
            RI   + S+       +W +            + +  L  H   +N V +         
Sbjct: 105 GRI---LSSSSRDKTIKVWDVE---------TGKCLTTLRGHTDWVNSVAF---SPDGTF 149

Query: 138 VSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW 195
           V+    +  I LW L              +G    ++  A+ P     ++++ + +++ W
Sbjct: 150 VASSSQDGTIKLWDLRTGKCV-----ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 196 DLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252
           DL + GK       H   V +V +      LL + +++  I +WDLR     +Q L GHT
Sbjct: 205 DLST-GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT-GECVQTLSGHT 261

Query: 253 HWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           +   ++  +P+    + S   D T+ +W
Sbjct: 262 NSVTSLAWSPDG-KRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 25/173 (14%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADE 230
           A+ P     ++ + + +++ WDL +  K   S+E  H   V  +   +   + ++ A+  
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 231 SG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288
               + LWDL      I+ L GH+    ++  +P+       +  D T+ LW + T    
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--- 188

Query: 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
                             L++ + + D V  LA+S     + AS S DG + +
Sbjct: 189 ----------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
             +  L  H   +  V +   G+        +  + LW L+     + +  K   G +  
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE 230
           LS        +     + + +++ WDLR+     ++E          +    ++ + + +
Sbjct: 334 LSFSPD--GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH 287
             + LWDL      ++ L GHT    +          + S  +D+T+ LW + TS  
Sbjct: 392 GTVRLWDLSTGS-LLRNLDGHTSRVTS-LDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            ++ L GHT    +V  +P+   ++ S   D T+ LW
Sbjct: 4   LLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            ++ L GHT    +V  +P+    + S   D TV +W
Sbjct: 3   LLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.57
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.57
KOG2315	566	consensus Predicted translation initiation factor	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.35
PRK04043	419	tolB translocation protein TolB; Provisional	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.33
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.32
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.31
PRK04043	419	tolB translocation protein TolB; Provisional	99.3
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.17
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.17
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.08
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.06
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.02
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.92
COG4946	668	Uncharacterized protein related to the periplasmic	98.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
KOG2314	698	consensus Translation initiation factor 3, subunit	98.89
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.82
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.76
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.67
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.66
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.59
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.59
PRK02888	635	nitrous-oxide reductase; Validated	98.57
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.53
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.51
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.49
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.47
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.43
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.33
COG3391	381	Uncharacterized conserved protein [Function unknow	98.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.31
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.27
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.21
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.14
PRK02888	635	nitrous-oxide reductase; Validated	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.11
KOG3621	726	consensus WD40 repeat-containing protein [General	98.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.06
COG3391	381	Uncharacterized conserved protein [Function unknow	98.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
KOG2395	644	consensus Protein involved in vacuole import and d	97.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.88
KOG2444	238	consensus WD40 repeat protein [General function pr	97.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.84
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.79
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.73
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.73
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.6
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.52
PRK13616	591	lipoprotein LpqB; Provisional	97.47
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
KOG2395	644	consensus Protein involved in vacuole import and d	97.4
PRK13616	591	lipoprotein LpqB; Provisional	97.38
KOG2444	238	consensus WD40 repeat protein [General function pr	97.34
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.34
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.3
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.11
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.09
PRK10115	686	protease 2; Provisional	96.9
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.86
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.76
KOG2247	615	consensus WD40 repeat-containing protein [General	96.7
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.63
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.57
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.51
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.39
PHA02713	557	hypothetical protein; Provisional	96.35
COG5167	776	VID27 Protein involved in vacuole import and degra	96.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.47
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.3
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.27
PHA02713	557	hypothetical protein; Provisional	95.25
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.1
PRK10115	686	protease 2; Provisional	95.07
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.04
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.03
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.97
COG5167	776	VID27 Protein involved in vacuole import and degra	94.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.84
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.3
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.24
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.22
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.15
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.07
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.97
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.89
PHA03098	534	kelch-like protein; Provisional	93.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.52
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.25
KOG2247	615	consensus WD40 repeat-containing protein [General	93.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.09
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.01
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.73
PRK13684	334	Ycf48-like protein; Provisional	92.7
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.31
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.28
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.24
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.7
PHA03098	534	kelch-like protein; Provisional	91.67
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.13
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.05
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.94
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.84
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.61
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.42
COG4590	733	ABC-type uncharacterized transport system, permeas	90.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.02
COG4590	733	ABC-type uncharacterized transport system, permeas	90.01
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.0
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.57
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.35
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.18
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.14
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.37
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.11
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.01
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	87.9
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.81
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.06
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.47
PHA02790	480	Kelch-like protein; Provisional	86.42
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	85.62
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.0
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.41
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.33

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=100.00  E-value=6.2e-47  Score=289.82  Aligned_cols=346  Identities=55%  Similarity=0.921  Sum_probs=290.6

Q ss_pred             CCcceeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018697            3 GGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (351)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~   82 (351)
                      ||..+++|++++|+|+++.+..+.+..+|++||.+++.+|++.+++++++++.+..+.++.|.+.|+.|+-+|.++.+++
T Consensus         1 ~~s~~liyGle~qAR~lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ila   80 (370)
T KOG1007|consen    1 GDSSGLIYGLEYQARCLTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILA   80 (370)
T ss_pred             CCcccceeeeeeeeeecCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence            45678999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             EEeecCCc----ceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC-C
Q 018697           83 TVFSTGES----YGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-N  156 (351)
Q Consensus        83 ~~~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~  156 (351)
                      +++..-.|    ..+.||.++++.+.....+.+.+..+. .+-+.|.|+.|.|++.  -+++-.|..|.+|++..... .
T Consensus        81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~dn~i~l~~l~ess~~v  158 (370)
T KOG1007|consen   81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMDDNNIVLWSLDESSKIV  158 (370)
T ss_pred             EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEeccCceEEEEcccCcchh
Confidence            98763333    358899999877766666677777775 5667999999999888  46666699999999997766 3


Q ss_pred             cccccccccCcccceeeeEECCC-CCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCe
Q 018697          157 AQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                      ..+......++....++-+|+|. ....+....|+++..||+++..+...+..+|   +..+.|+|+.+++|+++++||.
T Consensus       159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy  238 (370)
T KOG1007|consen  159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY  238 (370)
T ss_pred             eeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence            44444444556778889999993 3345555679999999999999999998777   9999999999999999999999


Q ss_pred             EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc-------ccccCCcc---c
Q 018697          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE-------SLVESPNQ---R  302 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~---~  302 (351)
                      |++||.|..+.+++++.+|..+|.++.|+|....++++++.|..|.+|....-++++....       ....+.++   .
T Consensus       239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL  318 (370)
T KOG1007|consen  239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL  318 (370)
T ss_pred             EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence            9999999989999999999999999999999889999999999999998877654432111       11111111   2


Q ss_pred             ccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018697          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR  350 (351)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  350 (351)
                      ....+.++..|+..|.+++|+...+|+||+-++||++.|=+++++.++
T Consensus       319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~ky  366 (370)
T KOG1007|consen  319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFLKY  366 (370)
T ss_pred             cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChhhhh
Confidence            234567888999999999999999999999999999999999887765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-47  Score=307.57  Aligned_cols=280  Identities=21%  Similarity=0.333  Sum_probs=251.4

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcce
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYG   92 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~~   92 (351)
                      +.|++..+.++.+...++.|++    .+.+.+|.....   .....+.+|...|.++.|+|.  +..++++    +.||+
T Consensus       174 d~rPis~~~fS~ds~~laT~sw----sG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~----s~Dgt  242 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSW----SGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATA----SADGT  242 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeec----CCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeee----ccCCc
Confidence            5788999999999999999876    578888887775   245778999999999999997  3456554    89999


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      +++|+++         +..++..+.+|...|..++|+|+|++ +.+++.|.+-++||+++.....     ...||...|.
T Consensus       243 vklw~~~---------~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL-----~QEGHs~~v~  307 (459)
T KOG0272|consen  243 VKLWKLS---------QETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL-----LQEGHSKGVF  307 (459)
T ss_pred             eeeeccC---------CCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH-----hhcccccccc
Confidence            9999998         56889999999999999999999995 6667999999999999743322     2347888999


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +++|+|||..+++|+.|..-+|||++++.++..+. +|   |.+|+|+|+|- .++||+.|++++|||+|. ...+.++.
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ip  384 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIP  384 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceecc
Confidence            99999999999999999999999999999999988 67   99999999996 899999999999999997 66799999


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (351)
                      +|.+-|+.|+|+|....+|+|++.|++++||..+.                   +.++.++.+|++.|.+++.++++. .
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~-~  444 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQ-A  444 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCc-e
Confidence            99999999999995559999999999999999999                   999999999999999999999999 8


Q ss_pred             EEEeeeCCeEEEee
Q 018697          330 FASLSYDGRVVVES  343 (351)
Q Consensus       330 l~s~~~dg~v~vw~  343 (351)
                      +++++.|+++++|.
T Consensus       445 i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 IATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCceeeecc
Confidence            99999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-44  Score=287.47  Aligned_cols=288  Identities=20%  Similarity=0.302  Sum_probs=241.9

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      +......+-...++|++.+++.|+    .+..+++|++..+..   .....+|...|.|++|+||++.|+++    +.||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGs----GD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk~iASG----~~dg  179 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGS----GDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGKKIASG----SKDG  179 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecC----CCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcchhhcc----ccCC
Confidence            333444555667788888888764    578888888887654   34567899999999999999999984    7999


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC-----CCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      .|++||...        ..+....+.+|...|++++|.|-     .+ .+++++.||.|+|||+..+...     ....+
T Consensus       180 ~I~lwdpkt--------g~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~-----~~lsg  245 (480)
T KOG0271|consen  180 SIRLWDPKT--------GQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCV-----RTLSG  245 (480)
T ss_pred             eEEEecCCC--------CCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEE-----EEecc
Confidence            999999772        23456788999999999999773     34 3556689999999999843222     23347


Q ss_pred             cccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC-----------CCCC-----------
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD-----------TKKK-----------  221 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~-----------~~~~-----------  221 (351)
                      |+.+|+|+.|-- ..++++++.|++|++|+...|.+...+. +|   |+.++.+           |.++           
T Consensus       246 HT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  246 HTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             CccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            899999999975 3579999999999999999998888887 55   8888776           3232           


Q ss_pred             -------------cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          222 -------------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       222 -------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                                   ..+++|++|.++.+|+.....+++..+.+|..-|+.+.|+||+ +++|+++.|.+|++||.++    
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t----  398 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT----  398 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC----
Confidence                         2599999999999999888788999999999999999999999 9999999999999999999    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                     ++.+.+|.+|-..|..++|+.|.+ +|++|+.|.++++|++++.
T Consensus       399 ---------------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  399 ---------------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             ---------------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee
Confidence                           999999999999999999999988 9999999999999999763

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-44  Score=283.19  Aligned_cols=283  Identities=19%  Similarity=0.301  Sum_probs=240.8

Q ss_pred             ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC-----CCCceEEEEe
Q 018697           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-----FDQRIFSTVF   85 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~   85 (351)
                      .++....|+..++++||+.+++.|.    .+|.|.+|+-..  +...-..+.+|...|.+++|.|     ..++|++   
T Consensus       152 t~KgH~~WVlcvawsPDgk~iASG~----~dg~I~lwdpkt--g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las---  222 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGKKIASGS----KDGSIRLWDPKT--GQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS---  222 (480)
T ss_pred             eecCCccEEEEEEECCCcchhhccc----cCCeEEEecCCC--CCcccccccCcccceeEEeecccccCCCccceec---
Confidence            3444567899999999999999885    578998887444  4456678899999999999976     3455555   


Q ss_pred             ecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        86 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                       ++.||.++|||+.         ...++..+.+|+.+|+|++|--+|-  +++++.|++|++|+...+....     ...
T Consensus       223 -~skDg~vrIWd~~---------~~~~~~~lsgHT~~VTCvrwGG~gl--iySgS~DrtIkvw~a~dG~~~r-----~lk  285 (480)
T KOG0271|consen  223 -SSKDGSVRIWDTK---------LGTCVRTLSGHTASVTCVRWGGEGL--IYSGSQDRTIKVWRALDGKLCR-----ELK  285 (480)
T ss_pred             -ccCCCCEEEEEcc---------CceEEEEeccCccceEEEEEcCCce--EEecCCCceEEEEEccchhHHH-----hhc
Confidence             4899999999998         6789999999999999999987664  7777999999999998643332     334


Q ss_pred             CcccceeeeEEC-----------CCCC-------------------------cEEEeecCCeEEEEEcccCC-cCceeec
Q 018697          166 GMLHYLSGGAWD-----------PHDV-------------------------NAVAATCESSVQFWDLRSMG-KTNSIEH  208 (351)
Q Consensus       166 ~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~d~~i~iwd~~~~~-~~~~~~~  208 (351)
                      +|...|+.++.+           |.++                         .|++++.|.++.+|+....+ ++..+. 
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-  364 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-  364 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-
Confidence            666678877655           3333                         39999999999999987654 444444 


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      +|   |+.+.|+||++ ++++++.|..|++||.++ ++.+.+|.+|-.+|+.++|+.|. ++|++|+.|.++++||+++ 
T Consensus       365 gHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~t-  440 (480)
T KOG0271|consen  365 GHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRT-  440 (480)
T ss_pred             chhhheeeEEECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeee-
Confidence            66   99999999999 899999999999999998 88899999999999999999999 9999999999999999999 


Q ss_pred             CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                                        .++...+.+|.+.|.+++|+|||+ .+++|+.|..+++|.
T Consensus       441 ------------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  441 ------------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             ------------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence                              888889999999999999999999 899999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.2e-44  Score=285.97  Aligned_cols=248  Identities=20%  Similarity=0.297  Sum_probs=221.4

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC-CCcEEEEe
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSI  140 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~  140 (351)
                      .+-..+|..+.|++++..|+++    +-+|.++||+.+         +...+.++.+|.+.|.++.|+|.. ...+++++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~----swsG~~kvW~~~---------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATG----SWSGLVKVWSVP---------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEe----ecCCceeEeecC---------CcceeEEEeccccceeeEEEccCCCccceeeec
Confidence            4567899999999999998885    799999999998         778899999999999999999983 33366669


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                      .||++++|++.+.....     ...+|...|..++|+|+|++|++++.|.+-++||++++..+...+ +|   |.+++|+
T Consensus       239 ~Dgtvklw~~~~e~~l~-----~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~  312 (459)
T KOG0272|consen  239 ADGTVKLWKLSQETPLQ-----DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQ  312 (459)
T ss_pred             cCCceeeeccCCCcchh-----hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEec
Confidence            99999999999643332     334677899999999999999999999999999999987766655 77   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      |||. ++++|+.|..-+|||+|+ ++++..+.+|..+|.+|.|+|+| ..||||+.|++++|||++.             
T Consensus       313 ~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~-------------  376 (459)
T KOG0272|consen  313 PDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRM-------------  376 (459)
T ss_pred             CCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecc-------------
Confidence            9999 999999999999999998 77899999999999999999999 9999999999999999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR  350 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  350 (351)
                            ..++.++.+|.+.|..+.|+|....+|+|++.|++++||.-....+-
T Consensus       377 ------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~  423 (459)
T KOG0272|consen  377 ------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL  423 (459)
T ss_pred             ------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence                  78899999999999999999965569999999999999998876543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.4e-41  Score=273.28  Aligned_cols=329  Identities=20%  Similarity=0.333  Sum_probs=260.3

Q ss_pred             eccccceeEeeeecC-------CCCcceEEEeeeeeC-CCCEEEEEEeC--C------------C----------CCeEE
Q 018697           10 YGLKYQARCISDVKA-------DTDHTSFLTGTLSLK-EENEVHLLRLS--S------------G----------GTELI   57 (351)
Q Consensus        10 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~-~~~~i~~~~~~--~------------~----------~~~~~   57 (351)
                      ..++.+...+.|++.       .-..+||++|+.+.+ .++.+.+-++.  .            +          ...+.
T Consensus        37 h~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~  116 (422)
T KOG0264|consen   37 HALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVE  116 (422)
T ss_pred             ccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccccceE
Confidence            356666666666653       123479999999998 56666665422  1            0          11344


Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC-CcceeeeeeeccccceeEEEecCCCCCcE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS-PQLERIAALDAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  136 (351)
                      ......|++.|+.+++.|+...|+++   .+..+.|.|||.......... ....+-..+.+|...-.+++|++.....+
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt---~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVAT---KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEe---cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            55667899999999999999999997   578889999998854322211 13455668899999889999999888768


Q ss_pred             EEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEccc--CCcCceeecce-
Q 018697          137 LVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRS--MGKTNSIEHAH-  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~--~~~~~~~~~~~-  210 (351)
                      ++++.|++|++||++......  ........+|...|..++|++.... +.+++.|+.+.|||+|+  .++..... +| 
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~  272 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHS  272 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccC
Confidence            888999999999998655421  2223345688899999999997655 55678999999999995  33333333 55 


Q ss_pred             --eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                        ++|++|+|.+.++||+|+.|++|.+||+|+..+++.++.+|...|.+|.|+|.....||+++.|+.+.+||+..-+.+
T Consensus       273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence              999999999999999999999999999999999999999999999999999999899999999999999999875554


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +.+...++..     .++++...+|...|..++|+|+.++.|+|.+.|+.+.||++...
T Consensus       353 q~~eda~dgp-----pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  353 QSPEDAEDGP-----PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cChhhhccCC-----cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            4423333322     57788999999999999999999999999999999999999753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.3e-40  Score=252.18  Aligned_cols=287  Identities=16%  Similarity=0.229  Sum_probs=244.8

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      ++.....|..+.+.++..+++-++    +++.+.+|+-...++.   ..+.-....|..++|+|.++.+++    ||-|+
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaS----qDGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAc----GGLdN  119 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSAS----QDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVAC----GGLDN  119 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeec----cCCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEe----cCcCc
Confidence            334455678888999998888765    6899999998876542   223345689999999999988877    58999


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      ...||++....   .....+..+.+.+|++-+.|+.|.+|+.  +++++.|.+..+||++++.+...+     .+|...|
T Consensus       120 ~Csiy~ls~~d---~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV  189 (343)
T KOG0286|consen  120 KCSIYPLSTRD---AEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVF-----HGHTGDV  189 (343)
T ss_pred             eeEEEeccccc---ccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEe-----cCCcccE
Confidence            99999998321   1223355677899999999999999877  899999999999999986554433     3788899


Q ss_pred             eeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       172 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      .+++++| +++.+++|+.|+..++||++.+.+++.|. +|   |+++.|.|+|. -|++|++|++.++||+|. .+.+..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa-D~~~a~  266 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA-DQELAV  266 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEEeecC-CcEEee
Confidence            9999999 88999999999999999999999999998 66   99999999998 799999999999999997 666766


Q ss_pred             eeC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          248 LPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       248 ~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      +..  -..+|++++|+..| ++|++|..|.++.+||.-.                   ++.+..+.+|++.|.++..+||
T Consensus       267 ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk-------------------~e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK-------------------GERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             eccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc-------------------cceEEEeeccCCeeEEEEECCC
Confidence            652  33689999999999 9999999999999999988                   8999999999999999999999


Q ss_pred             CCceEEEeeeCCeEEEee
Q 018697          326 EPWIFASLSYDGRVVVES  343 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~  343 (351)
                      |. .+++|++|..+|||.
T Consensus       327 G~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             Cc-EEEecchhHheeecC
Confidence            98 899999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=247.89  Aligned_cols=289  Identities=16%  Similarity=0.275  Sum_probs=233.0

Q ss_pred             ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe--EEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .++....++..++..+....+++..   ..+..+.+|++..+..+  ...+.+.||...|..+..++++++.+++    +
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sa---srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----s   82 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSA---SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----S   82 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEc---ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----c
Confidence            3555677788888777766666542   35678888998876432  3457889999999999999999998885    8


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .|+++++||+.         .++..+.|.+|...|.+++|+++.+. +++++.|.+|++|+..... ....   ....+.
T Consensus        83 wD~~lrlWDl~---------~g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~c-k~t~---~~~~~~  148 (315)
T KOG0279|consen   83 WDGTLRLWDLA---------TGESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVC-KYTI---HEDSHR  148 (315)
T ss_pred             ccceEEEEEec---------CCcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccE-EEEE---ecCCCc
Confidence            99999999999         67888999999999999999999985 7888999999999987422 1111   111236


Q ss_pred             cceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          169 HYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       169 ~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      ..|.++.|+|+  ..+|+.++.|++|++||+++.+....+. +|   ++.++++|||. ++++|+.||.+.+||++. ++
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k  225 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GK  225 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccC-Cc
Confidence            69999999998  6789999999999999999988777776 55   99999999998 999999999999999997 66


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec---------ccc
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS---------DYE  314 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  314 (351)
                      .+..+. |...|.+++|+|+. ..|+ +..+..|+|||+..                   ...+..++         ...
T Consensus       226 ~lysl~-a~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~-------------------~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCFSPNR-YWLC-AATATSIKIWDLES-------------------KAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             eeEecc-CCCeEeeEEecCCc-eeEe-eccCCceEEEeccc-------------------hhhhhhccccccccccccCC
Confidence            677765 78999999999986 4444 45556699999998                   44444432         112


Q ss_pred             ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          315 DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ....+++|+++|+ .|.+|-.|+.|++|.+..
T Consensus       284 ~~clslaws~dG~-tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  284 PICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence            3457899999999 799999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-40  Score=248.27  Aligned_cols=280  Identities=22%  Similarity=0.329  Sum_probs=235.4

Q ss_pred             ceEEEee---eeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018697           29 TSFLTGT---LSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (351)
Q Consensus        29 ~~~~~g~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (351)
                      .|+++++   +.+...+.+.++++.+..+ +....-+.-++.+.+++|+++....+.++   ..||+++|||+..     
T Consensus        22 nrLavAt~q~yGl~G~G~L~ile~~~~~g-i~e~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~d~~~-----   92 (311)
T KOG0277|consen   22 NRLAVATAQHYGLAGNGRLFILEVTDPKG-IQECQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLFDLTM-----   92 (311)
T ss_pred             chhheeehhhcccccCceEEEEecCCCCC-eEEEEeeecccceeEeeecCCCcceEEEE---ecCceEEEeccCC-----
Confidence            4455554   2345678999999875444 33344455678999999999888777664   7899999999763     


Q ss_pred             CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEE
Q 018697          106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAV  184 (351)
Q Consensus       106 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  184 (351)
                         ...++..++.|+.+|.++.|++..+..+++++.|++|++|+...++....     ..+|...|+..+|+|... .++
T Consensus        93 ---~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-----f~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   93 ---PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-----FNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             ---CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-----ecCCccEEEEEecCCCCCCeEE
Confidence               45789999999999999999998887788889999999999986444333     446888999999999754 566


Q ss_pred             EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018697          185 AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (351)
Q Consensus       185 ~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  261 (351)
                      +++.|+++++||++..-....++ .|   +.++.|+....++++||+.|+.|+.||+|+...|+.++.+|.-.|..++|+
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             EccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            77899999999999765555555 44   999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      |....+|++++.|-+++|||...                  ...++.+...|++-|.++.|++-.+..+|+++.|+.++|
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~------------------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V  305 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPER------------------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV  305 (311)
T ss_pred             cchhhHhhhccccceEEeccccc------------------chhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence            99888999999999999999986                  156777888999999999999977779999999999999


Q ss_pred             eec
Q 018697          342 ESV  344 (351)
Q Consensus       342 w~~  344 (351)
                      |+.
T Consensus       306 w~p  308 (311)
T KOG0277|consen  306 WNP  308 (311)
T ss_pred             ecc
Confidence            984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.3e-39  Score=243.33  Aligned_cols=267  Identities=12%  Similarity=0.238  Sum_probs=224.7

Q ss_pred             eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      .+.+..|++|+....   .....+....+.|+.+...|+++.|+++     ....||+||+..       ....++.++.
T Consensus        16 A~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S-------~np~Pv~t~e   80 (311)
T KOG0315|consen   16 AGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNS-------NNPNPVATFE   80 (311)
T ss_pred             ccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccC-------CCCCceeEEe
Confidence            356778877776654   3555555555899999999999999886     456899999983       2445899999


Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      +|+..|+++.|..+|+. ++++++||+++|||++.......+      .|..+|+++..+|+...|+++..+|.|++||+
T Consensus        81 ~h~kNVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             ccCCceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            99999999999999996 778899999999999963322222      34459999999999999999999999999999


Q ss_pred             ccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-----CcceeEeeCCCCceeEEEecCCCCCeEE
Q 018697          198 RSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----KAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       198 ~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~  269 (351)
                      .+..+...+.+..   +.++...|+|. +++.+.+.|+.++|++-..     -.|+..++.|++-+..+.+||++ .+|+
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~la  231 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLA  231 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEE
Confidence            9887666655333   99999999999 7888999999999998642     24677889999999999999999 9999


Q ss_pred             EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +++.|.+++||+....                  .+.-..+.+|...+++.+||.+++ +|++++.|+.+++|+++..
T Consensus       232 t~ssdktv~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             eecCCceEEEEecCCc------------------eeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccC
Confidence            9999999999999871                  255567789999999999999999 8999999999999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-39  Score=244.62  Aligned_cols=254  Identities=17%  Similarity=0.264  Sum_probs=213.8

Q ss_pred             EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      .....+.+|++.|..++..+.+..++..   .+.|.++.+|++...    +..-+.+++.+.+|...|..+..+++|++ 
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH~v~dv~~s~dg~~-   77 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSHFVSDVVLSSDGNF-   77 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEE---cccceEEEEEEeccC----ccccCceeeeeeccceEecceEEccCCce-
Confidence            3446788999999999999987777765   489999999999842    34456789999999999999999999995 


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e--eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H--VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~--v~  212 (351)
                      +++++.|+++++||+.+++....     +.+|...|.+++|+||.+.+++|+.|.+|.+|+.-........... .  |.
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~-----f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRR-----FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS  152 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEE-----EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence            77779999999999998643332     2367889999999999999999999999999998855433333333 3  99


Q ss_pred             EEEcCCCC-CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          213 NVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       213 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      |+.|+|.. ..+|++++.|++|++||+++ .+....+.+|++.++.++++||| .+.++|+.||.+.+||++.       
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~-------  223 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE-------  223 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC-------
Confidence            99999994 23899999999999999998 66788899999999999999999 9999999999999999998       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                  ++.+..+ .|...|.+++|+|+..  .+....+..|+|||+++
T Consensus       224 ------------~k~lysl-~a~~~v~sl~fspnry--wL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  224 ------------GKNLYSL-EAFDIVNSLCFSPNRY--WLCAATATSIKIWDLES  263 (315)
T ss_pred             ------------CceeEec-cCCCeEeeEEecCCce--eEeeccCCceEEEeccc
Confidence                        7887777 5678899999999864  44445566799999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-40  Score=265.08  Aligned_cols=279  Identities=18%  Similarity=0.273  Sum_probs=236.6

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...|..+.+.|++.|+++|+.    .+.+.+|+...   ......+..|...|.++.|++++.++++    |+.+|.|++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~----SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~gG~iKy  164 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQ----SGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMIS----GDKGGMIKY  164 (464)
T ss_pred             ccceeeEEEcCCCceeEeecc----cccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEE----cCCCceEEe
Confidence            446677888899999999974    57777776532   2222445689999999999999999998    489999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      |+..          ...++.+..|. ..|++++|+|+... ++++++||+|+|||.........+     .+|.-.|.++
T Consensus       165 Wqpn----------mnnVk~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksv  228 (464)
T KOG0284|consen  165 WQPN----------MNNVKIIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSV  228 (464)
T ss_pred             cccc----------hhhhHHhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhhee-----ccCCCCccee
Confidence            9975          45556666655 99999999997774 888899999999999865443333     3677789999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (351)
                      +|+|....+++++.|..|++||.++++++.++. .|   |..+.|+|++. +|++++.|..+++||+|. .+.+.++++|
T Consensus       229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~H  305 (464)
T KOG0284|consen  229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGH  305 (464)
T ss_pred             ccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcc
Confidence            999999999999999999999999999999887 44   99999999996 899999999999999996 5578899999


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceE
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l  330 (351)
                      ...|+++.|+|-.+.+|.+|+.||.|..|.+..                   .+++.. -.+|...|++++|+|-|. +|
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-------------------~~p~~~i~~AHd~~iwsl~~hPlGh-il  365 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-------------------EEPLGEIPPAHDGEIWSLAYHPLGH-IL  365 (464)
T ss_pred             hhhheeeccccccccceeeccCCCceEEEeccc-------------------cccccCCCcccccceeeeeccccce-eE
Confidence            999999999999989999999999999999985                   344433 357999999999999998 99


Q ss_pred             EEeeeCCeEEEeec
Q 018697          331 ASLSYDGRVVVESV  344 (351)
Q Consensus       331 ~s~~~dg~v~vw~~  344 (351)
                      ++|+.|.++++|.=
T Consensus       366 ~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  366 ATGSNDRTVRFWTR  379 (464)
T ss_pred             eecCCCcceeeecc
Confidence            99999999999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.1e-39  Score=278.29  Aligned_cols=251  Identities=16%  Similarity=0.251  Sum_probs=217.3

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc----------C-C-----------CCCCcceeeeeeecc
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----------G-Q-----------LNSPQLERIAALDAH  119 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----------~-~-----------~~~~~~~~~~~~~~h  119 (351)
                      ..-...+.|..|++++..|+.    |-.|..|++|.+....          . .           .+........++.+|
T Consensus       375 ~nt~~~v~ca~fSddssmlA~----Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLAC----GFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEcCCcceeEeecCCcchhhc----cccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            334478899999999986666    4588899999987310          0 0           011122344568899


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      .++|..+.|+|+.+. ++.++.|++|++|.+.+....     ....+|..+|+.+.|+|.|-++++++.|++-++|....
T Consensus       451 ~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~-----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCL-----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             CCceeeeeecccccc-eeeccCCcceeeeecccceeE-----EEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            999999999999994 778899999999999963222     22347889999999999999999999999999999998


Q ss_pred             CCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      ..+.+.+. +|   +.|+.|+|+.. ++++|+.|.++|+||..+ +..++.|.+|.++|.+++|+|+| ++|++|+.|+.
T Consensus       525 ~~PlRifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~  600 (707)
T KOG0263|consen  525 NKPLRIFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGL  600 (707)
T ss_pred             CCchhhhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCC-ceEeecccCCc
Confidence            88887777 66   99999999998 799999999999999998 77899999999999999999999 99999999999


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |++||+..                   +.++..+.+|++.|.++.|+.+|. +||+++.|++|++||+..
T Consensus       601 I~iWDl~~-------------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  601 IKIWDLAN-------------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEEEcCC-------------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence            99999999                   899999999999999999999999 999999999999999865

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.8e-38  Score=241.47  Aligned_cols=249  Identities=17%  Similarity=0.229  Sum_probs=216.3

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +.+.+|.++|.++.|+++.++|+++    +.||.+.|||.-         +...++.+......|..++|+|.++. ++.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~---------TtnK~haipl~s~WVMtCA~sPSg~~-VAc  114 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSF---------TTNKVHAIPLPSSWVMTCAYSPSGNF-VAC  114 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEee----ccCCeEEEEEcc---------cccceeEEecCceeEEEEEECCCCCe-EEe
Confidence            6678999999999999999999996    899999999987         55667777788899999999999993 444


Q ss_pred             EecCCcEEEEEcCCCCC-CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          139 SIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      ++-|+...||++.+... ..........+|+..+.++.|.+ +..|++++.|.+..+||+++++....+. +|   |.++
T Consensus       115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sl  192 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSL  192 (343)
T ss_pred             cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEE
Confidence            48899999999985422 22223345678999999999987 5679999999999999999999998888 77   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      +++|...+.+++|+-|+..++||+|. +..+++|.+|+..|++++|.|+| .-+++|+.|++.++||++.          
T Consensus       193 sl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRa----------  260 (343)
T KOG0286|consen  193 SLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRA----------  260 (343)
T ss_pred             ecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecC----------
Confidence            99994444999999999999999998 67999999999999999999999 9999999999999999998          


Q ss_pred             cccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          295 LVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                               .+.+..+..  -..+|++++||..|+ +|.+|..|..+.+||.-
T Consensus       261 ---------D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  261 ---------DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             ---------CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence                     777777753  245799999999999 89999999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-39  Score=255.64  Aligned_cols=239  Identities=21%  Similarity=0.366  Sum_probs=213.2

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      +-.|..+.|.|+|++|+++    +..|.+.+|+..         .......++.|.++|.++.|++++.+ ++++..+|.
T Consensus        96 kc~V~~v~WtPeGRRLltg----s~SGEFtLWNg~---------~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~  161 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTG----SQSGEFTLWNGT---------SFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGM  161 (464)
T ss_pred             ccceeeEEEcCCCceeEee----cccccEEEecCc---------eeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCce
Confidence            4588999999999999996    688999999987         55555667899999999999999995 777788999


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK  221 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~  221 (351)
                      |++|+.+-.  ..+....   .|...|++++|+|++..+++++.||+|+|||....+....+. +|   |.+++|+|...
T Consensus       162 iKyWqpnmn--nVk~~~a---hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg  235 (464)
T KOG0284|consen  162 IKYWQPNMN--NVKIIQA---HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG  235 (464)
T ss_pred             EEecccchh--hhHHhhH---hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc
Confidence            999998832  2222222   244699999999999999999999999999999888777776 66   99999999988


Q ss_pred             cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                       ++++|+.|..|++||.++ +.++.++..|...|..+.|+|++ ++|+|++.|..++++|+++                 
T Consensus       236 -LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~-----------------  295 (464)
T KOG0284|consen  236 -LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT-----------------  295 (464)
T ss_pred             -eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH-----------------
Confidence             999999999999999998 88999999999999999999999 9999999999999999998                 


Q ss_pred             cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                        .+.++++++|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus       296 --mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  296 --MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             --hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence              788999999999999999999888899999999999999987

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.5e-37  Score=265.68  Aligned_cols=299  Identities=18%  Similarity=0.323  Sum_probs=237.5

Q ss_pred             eeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC----------------------------CCeEEE
Q 018697            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----------------------------GTELIC   58 (351)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----------------------------~~~~~~   58 (351)
                      .+.|..--....+....++++...++.|.    .+-.|++|.+.+.                            ......
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~  444 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS  444 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence            45565554455667777888888777774    3566777776642                            112223


Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.++|..+.|+|+.++|+++    ++|+++|+|.+.         +...+..+++|..+|+++.|+|.|-+ +++
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlSc----SED~svRLWsl~---------t~s~~V~y~GH~~PVwdV~F~P~GyY-Fat  510 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSC----SEDSSVRLWSLD---------TWSCLVIYKGHLAPVWDVQFAPRGYY-FAT  510 (707)
T ss_pred             EEeecCCCceeeeeecccccceeec----cCCcceeeeecc---------cceeEEEecCCCcceeeEEecCCceE-EEe
Confidence            5689999999999999999999985    899999999999         78888899999999999999999985 666


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      ++.|++-++|..... ...+++    .+|...|.|+.|+|+..++++|+.|.++++||+.+|..++.|. +|   |.+++
T Consensus       511 as~D~tArLWs~d~~-~PlRif----aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~  584 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHN-KPLRIF----AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA  584 (707)
T ss_pred             cCCCceeeeeecccC-Cchhhh----cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE
Confidence            699999999998852 233333    3677899999999999999999999999999999999988887 67   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC-----
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL-----  290 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----  290 (351)
                      |+|+|+ +|++|++|+.|.+||+.. +.++..+.+|++.|.++.|+.+| .+|++|+.|.+|++||+........     
T Consensus       585 ~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~  661 (707)
T KOG0263|consen  585 FSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHIS  661 (707)
T ss_pred             EcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccc
Confidence            999999 899999999999999997 77899999999999999999999 9999999999999999986433200     


Q ss_pred             CCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018697          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (351)
                      ...............++.++..-..+|.++.|....- .|+.|
T Consensus       662 ~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g  703 (707)
T KOG0263|consen  662 TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG  703 (707)
T ss_pred             cccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence            0000000011122456777777777899999988653 45544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-38  Score=247.22  Aligned_cols=251  Identities=18%  Similarity=0.248  Sum_probs=221.8

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+.+|..+|+.+-|+|+-...+++    ++|++|++||..         +++....+++|...+..++|+..|+. ++
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~a----s~d~tikv~D~~---------tg~~e~~LrGHt~sv~di~~~a~Gk~-l~  166 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSA----SEDATIKVFDTE---------TGELERSLRGHTDSVFDISFDASGKY-LA  166 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEe----cCCceEEEEEcc---------chhhhhhhhccccceeEEEEecCccE-EE
Confidence            35677899999999999987666664    799999999998         77889999999999999999999983 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.|-.+++||..+.....+    ...+|...|.++.|-|.+.++++++.|.+|+.|++.++.++.++. +|   +..+
T Consensus       167 tcSsDl~~~LWd~~~~~~c~k----s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v  241 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTFFRCIK----SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMV  241 (406)
T ss_pred             ecCCccchhheeHHHHHHHHH----HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEE
Confidence            668888899999985322222    233677799999999999999999999999999999999999998 55   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC--------------CCeEEEeeCCCeEEEE
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--------------DGFILSAGTDSTVNLW  280 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~s~~~dg~i~iw  280 (351)
                      ..+.||. ++++++.|.++++|-+.+ +++...+..|+.+|-+++|.|..              ..++.+++.|++|++|
T Consensus       242 ~v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  242 RVNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             EecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence            9999998 999999999999999997 77788899999999999998732              2599999999999999


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      |+.+                   +.++.++.+|.+.|.+++|+|.|+ +|+++.+|+++++||++....
T Consensus       320 dv~t-------------------g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~c  368 (406)
T KOG0295|consen  320 DVST-------------------GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQC  368 (406)
T ss_pred             eccC-------------------CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEecccee
Confidence            9999                   999999999999999999999999 899999999999999986543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-36  Score=242.07  Aligned_cols=288  Identities=16%  Similarity=0.230  Sum_probs=238.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      +.-+..+.+++++..++.++    .+....+|.+..+...-+..++.+|..+|.-+.||||.++|+++    +.+..+.+
T Consensus       224 tdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC----g~~e~~~l  295 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC----GFDEVLSL  295 (519)
T ss_pred             CCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec----CchHheee
Confidence            34566678888888888764    45666778887776655668899999999999999999999986    77888999


Q ss_pred             EEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      ||+.         ++.....+. +|...+.+++|.|||.. +++|+.|+++..||++....  ......   ....|.++
T Consensus       296 wDv~---------tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~--~~W~gv---r~~~v~dl  360 (519)
T KOG0293|consen  296 WDVD---------TGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNIL--GNWEGV---RDPKVHDL  360 (519)
T ss_pred             ccCC---------cchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchh--hccccc---ccceeEEE
Confidence            9998         566655553 34678999999999997 88889999999999984321  111111   11379999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (351)
                      +..+||+++++.+.|..|++++.++......+...+ ++++..+.+++ ++++.-.+..+++||+.. ...++.+.+|..
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQ  438 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccc
Confidence            999999999999999999999999877666666455 99999999998 777888999999999996 667888888875


Q ss_pred             c--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEE
Q 018697          254 W--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (351)
Q Consensus       254 ~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (351)
                      .  +-.-+|.-..+.++++|++|+.|+||+..+                   ++++.++.+|...|++++|+|..+.++|
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             cceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCCHHHhh
Confidence            4  444456655558999999999999999999                   9999999999999999999999999999


Q ss_pred             EeeeCCeEEEeecCcc
Q 018697          332 SLSYDGRVVVESVKPF  347 (351)
Q Consensus       332 s~~~dg~v~vw~~~~~  347 (351)
                      ++|+||+||||...++
T Consensus       500 SasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSDN  515 (519)
T ss_pred             ccCCCCeEEEecCCcc
Confidence            9999999999998865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-35  Score=242.08  Aligned_cols=278  Identities=19%  Similarity=0.347  Sum_probs=242.2

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+.++.+.++.++..++.|.    .++.+++|+....    +...+-.|.++|.++.|+..|.+|+++    +.|+++.+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~----~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~----~vD~ttil  302 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGS----EDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSG----GVDGTTIL  302 (524)
T ss_pred             cCCcceEEecCCCCeEEEee----cCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEec----cCCccEEE
Confidence            46788899999999999986    5789988887653    235667799999999999999999995    89999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||..         ++.....+..|..+-..+.|-.+..  +++++.|+.|+|+.+........+     .+|..+|.++.
T Consensus       303 wd~~---------~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk  366 (524)
T KOG0273|consen  303 WDAH---------TGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALK  366 (524)
T ss_pred             Eecc---------CceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcceee-----ecccCceEEEE
Confidence            9987         6677778888988888999998887  788889999999999854433322     25778999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC--------cEEEEecCCCeEEEEecccCCcc
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK--------HLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      |+|.+..|++++.|++++||.+........+. .|   |..+.|+|.|+        ..+++++.|++|++||+.. +.+
T Consensus       367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~  444 (524)
T KOG0273|consen  367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVP  444 (524)
T ss_pred             ECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cce
Confidence            99999999999999999999998888887777 55   99999998764        3688999999999999998 789


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      +..|..|+.+|.+++|+|+| +++|+|+.||.|.+|+++.                   ++.++.+.+. ..|..++|+.
T Consensus       445 i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~-------------------~~l~~s~~~~-~~Ifel~Wn~  503 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT-------------------GKLVKSYQGT-GGIFELCWNA  503 (524)
T ss_pred             eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc-------------------hheeEeecCC-CeEEEEEEcC
Confidence            99999999999999999999 9999999999999999999                   8988888764 4599999999


Q ss_pred             CCCceEEEeeeCCeEEEeecC
Q 018697          325 REPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +|. .+..+-.|+.+++-|+.
T Consensus       504 ~G~-kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  504 AGD-KLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCC-EEEEEecCCCceEEEec
Confidence            998 78888889999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-35  Score=229.15  Aligned_cols=279  Identities=18%  Similarity=0.289  Sum_probs=237.1

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      -.|..+.++|++..|+.|    +.|..|.+|++..+.+..  -.+.+|.++|..+.|.+++..++++    |.|.+|+.|
T Consensus        48 geI~~~~F~P~gs~~aSg----G~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~~~d~s~i~S~----gtDk~v~~w  117 (338)
T KOG0265|consen   48 GEIYTIKFHPDGSCFASG----GSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHGMRDGSHILSC----GTDKTVRGW  117 (338)
T ss_pred             ceEEEEEECCCCCeEeec----CCcceEEEEeccccccce--eeeccccceeEeeeeccCCCEEEEe----cCCceEEEE
Confidence            345667788988888876    568999999977654433  2345999999999999999999986    899999999


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      |++         +++.++.+++|..-|..+.-+.-|..++.+++.|+++++||+++...........      +++++.|
T Consensus       118 D~~---------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky------qltAv~f  182 (338)
T KOG0265|consen  118 DAE---------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY------QLTAVGF  182 (338)
T ss_pred             ecc---------cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce------eEEEEEe
Confidence            999         7899999999999999998666677544444889999999999755544443333      8999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC---CcceeEeeC
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML---KAPIQELPG  250 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~  250 (351)
                      ..++..+++|+-|+.|++||++.......+. +|   |+.+..+|+|. .+.+-+-|.++++||+|..   .+++..+.+
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeec
Confidence            9999999999999999999999988888887 66   99999999999 7888999999999999853   234667776


Q ss_pred             CCC----ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          251 HTH----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       251 ~~~----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                      |..    .....+|+|++ ..+.+|+.|..+++||...                   ...+..+.+|...|++++|+|..
T Consensus       261 ~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             chhhhhhhcceeeccCCC-CccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCC
Confidence            553    35678899999 9999999999999999998                   88999999999999999999999


Q ss_pred             CceEEEeeeCCeEEEee
Q 018697          327 PWIFASLSYDGRVVVES  343 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~  343 (351)
                      + +|.+++.|.+|++=+
T Consensus       321 ~-iils~~sdk~i~lge  336 (338)
T KOG0265|consen  321 P-IILSCSSDKTIYLGE  336 (338)
T ss_pred             c-EEEEeccCceeEeec
Confidence            9 999999999998744

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-36  Score=238.80  Aligned_cols=280  Identities=18%  Similarity=0.327  Sum_probs=237.9

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+..+-++|+-.-.+.+    .++..|++|++...  .+ ...+.+|.+.|.+|+|+..|+.|+++    +.|-.+++||
T Consensus       110 ~vt~v~~hp~~~~v~~a----s~d~tikv~D~~tg--~~-e~~LrGHt~sv~di~~~a~Gk~l~tc----SsDl~~~LWd  178 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSA----SEDATIKVFDTETG--EL-ERSLRGHTDSVFDISFDASGKYLATC----SSDLSAKLWD  178 (406)
T ss_pred             ceeeeeeccCceEEEEe----cCCceEEEEEccch--hh-hhhhhccccceeEEEEecCccEEEec----CCccchhhee
Confidence            34444455554444333    36788999887764  33 67889999999999999999888875    7888899999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ..+        ..++++.+.+|+..|.+++|-|.|.+ +++++.|.+|+.|++.++-....+     .+|.+.|..+..+
T Consensus       179 ~~~--------~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  179 FDT--------FFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVN  244 (406)
T ss_pred             HHH--------HHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec-----cCchHhEEEEEec
Confidence            983        46788888999999999999999985 677799999999999986544332     3567799999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeec-ce-eEEEEcCCCC--------------CcEEEEecCCCeEEEEecccC
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKK--------------KHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-v~~~~~~~~~--------------~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      .||..+++++.|.+|++|-+.++++...+.. .| +.+++|.|..              ..++++++.|++|++||+.+ 
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-  323 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-  323 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-
Confidence            9999999999999999999999987777662 23 8999987641              13799999999999999998 


Q ss_pred             CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      +.++.++.+|..+|..++|+|.| +||+++..|+++++||++.                   .++..++..|+.-|++++
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~-------------------~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKN-------------------LQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecc-------------------ceeeeccCCCcceeEEEe
Confidence            77999999999999999999999 9999999999999999999                   899999999999999999


Q ss_pred             eCCCCCceEEEeeeCCeEEEeec
Q 018697          322 WSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      |+.+.+ ++++|+-|..+++|..
T Consensus       384 fh~~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCc-eEEeccccceeeeeec
Confidence            999988 8999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-35  Score=250.72  Aligned_cols=312  Identities=14%  Similarity=0.144  Sum_probs=244.1

Q ss_pred             eeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      .+++.+......|..+.++..+..+++|..   .-+++.+|.+..+.   ......+|...+.+++++|||+.+++    
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEs---YVlKQQgH~~~i~~l~YSpDgq~iaT----  367 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSES---YVLKQQGHSDRITSLAYSPDGQLIAT----  367 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccc---eeeeccccccceeeEEECCCCcEEEe----
Confidence            445566666667777888888888888853   35789999987754   33455789999999999999999888    


Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      |++|++|+|||..         .+-+..++..|+..|+.+.|+..++. +++++-||+|+.||+........+....   
T Consensus       368 G~eDgKVKvWn~~---------SgfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~---  434 (893)
T KOG0291|consen  368 GAEDGKVKVWNTQ---------SGFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPE---  434 (893)
T ss_pred             ccCCCcEEEEecc---------CceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCC---
Confidence            4799999999988         77899999999999999999999983 6777999999999998654433333222   


Q ss_pred             cccceeeeEECCCCCcEEEeecC-CeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCE-SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                       .-...+++..|.|..+.+|+.| -.|.+|++++|+.+..+. +|   |.+++|+|.+. .|++++.|.+|++||+-...
T Consensus       435 -p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  435 -PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             -ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEEeccccceEEEEEeeccC
Confidence             2267889999999988888876 479999999999888887 67   99999999998 89999999999999987644


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc-cccccceeeccccceEEEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-RANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~  321 (351)
                      ..+.++. +...+..++|.|+| .-|+.++.||.|.+||...........+..+..+.. ........-.......+.++
T Consensus       512 ~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~  589 (893)
T KOG0291|consen  512 GTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC  589 (893)
T ss_pred             ceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence            4566665 67889999999999 999999999999999998743322222222211111 01111111123346789999


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          322 WSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +++||. .+++||..+.|++|++++.
T Consensus       590 ySaDG~-~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  590 YSADGK-CILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EcCCCC-EEEecCCcccEEEEECchh
Confidence            999999 8999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-36  Score=244.95  Aligned_cols=240  Identities=20%  Similarity=0.298  Sum_probs=211.4

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      +..|++++|+.+|..|+++    ..||.+++|+..          +..+.++..|+++|.++.|+..|.+ +++++.|++
T Consensus       235 nkdVT~L~Wn~~G~~LatG----~~~G~~riw~~~----------G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~t  299 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATG----SEDGEARIWNKD----------GNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGT  299 (524)
T ss_pred             cCCcceEEecCCCCeEEEe----ecCcEEEEEecC----------chhhhhhhccCCceEEEEEcCCCCE-EEeccCCcc
Confidence            4689999999999888884    799999999976          5778899999999999999999996 777799999


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK  221 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~  221 (351)
                      +.+||..++........     |..+..++.|-. ...+++.+.|+.|+++.+....++.++.. |   |.++.|+|.+.
T Consensus       300 tilwd~~~g~~~q~f~~-----~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~  372 (524)
T KOG0273|consen  300 TILWDAHTGTVKQQFEF-----HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGS  372 (524)
T ss_pred             EEEEeccCceEEEeeee-----ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCc
Confidence            99999987554433332     233446788875 45688899999999999999999999984 6   99999999998


Q ss_pred             cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC--------CeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD--------GFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                       +|++++.|++++||.+.. ......+..|...|..+.|+|.|+        ..+++++.|++|++||+..         
T Consensus       373 -LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---------  441 (524)
T KOG0273|consen  373 -LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---------  441 (524)
T ss_pred             -eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------
Confidence             999999999999999887 668899999999999999999762        5899999999999999999         


Q ss_pred             ccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                                +.++++|..|..+|.+++|+|+|+ ++|+|+.||.|.+|+.+...
T Consensus       442 ----------gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  442 ----------GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             ----------CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchh
Confidence                      999999999999999999999999 89999999999999988643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-36  Score=254.38  Aligned_cols=251  Identities=17%  Similarity=0.270  Sum_probs=224.3

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+..+...|.++.|+|..+.++++.    ..|.|.|||.+         +..+++.+....-+|.+..|-+..++ ++++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnye---------tqtmVksfeV~~~PvRa~kfiaRknW-iv~G   73 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYE---------TQTMVKSFEVSEVPVRAAKFIARKNW-IVTG   73 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEee----ecCeeEEEecc---------cceeeeeeeecccchhhheeeeccce-EEEe
Confidence            3445889999999999999999974    78899999998         67888999999999999999998886 8888


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce---eEEEE
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVD  215 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~---v~~~~  215 (351)
                      ++|..|+||+.++.++...+.     .|...|.+++.+|..+++++++.|-.|++||-+.+- +.++++ +|   |.+++
T Consensus        74 sDD~~IrVfnynt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~  147 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA  147 (794)
T ss_pred             cCCceEEEEecccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE
Confidence            999999999999876554433     577799999999999999999999999999998764 444554 66   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC-CCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY-DGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      |+|...+.+++++-|++|++|.+.+ ..+..++++|...|+++.+-+.| ..+|+||+.|.+|+|||.++          
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt----------  216 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT----------  216 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------
Confidence            9999999999999999999999998 66899999999999999997755 47999999999999999999          


Q ss_pred             cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccccC
Q 018697          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSRK  351 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~  351 (351)
                               ..+++++.+|...|..+.|+|.-+ ++++|+.||++|||+-.++..++
T Consensus       217 ---------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  217 ---------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             ---------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence                     999999999999999999999999 99999999999999998876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-36  Score=246.27  Aligned_cols=287  Identities=15%  Similarity=0.212  Sum_probs=239.4

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      +....+.++++.+-|....|+++   .+.++.|++|++..+..  ..+.+.+|..+|.+++|++++..++++    +.|+
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~----sfD~  280 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSA----SFDR  280 (503)
T ss_pred             ccCCccccchhhhccceeeEEEe---cCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeee----ecce
Confidence            33345666777777744444443   25689999999999654  457889999999999999999999996    7999


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .|++||.+         +++.+..+. ....++|+.|.|++.+++++++.|+.|+.||+++++...     ....|...|
T Consensus       281 ~lKlwDtE---------TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq-----eYd~hLg~i  345 (503)
T KOG0282|consen  281 FLKLWDTE---------TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ-----EYDRHLGAI  345 (503)
T ss_pred             eeeeeccc---------cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH-----HHHhhhhhe
Confidence            99999999         788887773 455789999999998889999999999999999765322     233466799


Q ss_pred             eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--ccee
Q 018697          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--APIQ  246 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~  246 (351)
                      ..+.|-++++.+++++.|+.++||+.+.+..+..+...  | ..++..+|+++ +++.-+.|..|.+|.+...-  ...+
T Consensus       346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhh
Confidence            99999999999999999999999999987766555432  3 88999999998 78889999999999976422  2345


Q ss_pred             EeeCCC--CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          247 ELPGHT--HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       247 ~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      .+++|.  +.-..+.||||| .+|++|+.||.+.+||.++                   .+++..++.|..++..+.|+|
T Consensus       425 ~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             hhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEEecC
Confidence            677776  345678999999 9999999999999999999                   899999999999999999999


Q ss_pred             CCCceEEEeeeCCeEEEee
Q 018697          325 REPWIFASLSYDGRVVVES  343 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~  343 (351)
                      ..+..+|+++.||.|++|+
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            9888999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.8e-35  Score=219.72  Aligned_cols=269  Identities=16%  Similarity=0.276  Sum_probs=222.0

Q ss_pred             eeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      +..+.++..-+..+...|+...++++.     ...|+++++...+.. -...+.+|.+.|.++.|..+|+.+++    |+
T Consensus        33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyT----gs  102 (311)
T KOG0315|consen   33 SRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYT----GS  102 (311)
T ss_pred             EEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEe----cC
Confidence            445555556677778888888888764     467999999987654 44778899999999999999999988    58


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      +||+++|||+.         .....+.+ .|.++|+++..+|+... ++++..+|.|++||+.+......+....    .
T Consensus       103 eDgt~kIWdlR---------~~~~qR~~-~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~----~  167 (311)
T KOG0315|consen  103 EDGTVKIWDLR---------SLSCQRNY-QHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPED----D  167 (311)
T ss_pred             CCceEEEEecc---------Ccccchhc-cCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCC----C
Confidence            99999999998         44554555 67799999999999875 8888889999999999765555544433    2


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      ..|.++...|+|..++++...|..++|++-+......+.+     .|   +..+.++|+++ +|++++.|.+++||+...
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCC
Confidence            4899999999999999999999999999987553333321     23   88999999999 799999999999999987


Q ss_pred             CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      .-+....+++|..++...+||.+| .||+||+.|+.+++||++.                   ++.+..+.+|.....++
T Consensus       247 ~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~-------------------~k~v~qy~gh~K~~vc~  306 (311)
T KOG0315|consen  247 FFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA-------------------GKEVRQYQGHHKAAVCV  306 (311)
T ss_pred             ceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc-------------------CceeeecCCcccccEEE
Confidence            535567788999999999999999 9999999999999999999                   89999999998877776


Q ss_pred             EeC
Q 018697          321 AWS  323 (351)
Q Consensus       321 ~~~  323 (351)
                      +..
T Consensus       307 ~ln  309 (311)
T KOG0315|consen  307 ALN  309 (311)
T ss_pred             Eee
Confidence            653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-34  Score=237.14  Aligned_cols=292  Identities=17%  Similarity=0.231  Sum_probs=228.0

Q ss_pred             cceeEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018697           14 YQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~   92 (351)
                      .+.|.+.++.+-|.. -|++.|    .+++.+.+++=.+   .-....+..|..-|.+++|+|||.+++++    +.|++
T Consensus       145 GhSr~ins~~~KpsRPfRi~T~----sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~Fat~----gsDgk  213 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPFRIATG----SDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSRFATA----GSDGK  213 (603)
T ss_pred             ccceeEeeeeccCCCceEEEec----cCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCeEEEe----cCCcc
Confidence            356777777777765 455544    4667776555333   22335567799999999999999999987    79999


Q ss_pred             EEEEEcccccCCCCCCcceeeeeee---ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc---------
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---------  160 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---------  160 (351)
                      +.+||=.         +++.+..+.   +|++.|.+++|+||+.+ +++++.|.+++|||+.+........         
T Consensus       214 i~iyDGk---------tge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq  283 (603)
T KOG0318|consen  214 IYIYDGK---------TGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ  283 (603)
T ss_pred             EEEEcCC---------CccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence            9999976         677777776   89999999999999996 7777899999999998653211110         


Q ss_pred             -----------------------------cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce------
Q 018697          161 -----------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS------  205 (351)
Q Consensus       161 -----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------  205 (351)
                                                   .....+|...|+++..+|++++|++++.||.|.-||..++..-..      
T Consensus       284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~  363 (603)
T KOG0318|consen  284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT  363 (603)
T ss_pred             EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence                                         112357888999999999999999999999999998865431100      


Q ss_pred             -------------------------e-------------ecc--------------------------------------
Q 018697          206 -------------------------I-------------EHA--------------------------------------  209 (351)
Q Consensus       206 -------------------------~-------------~~~--------------------------------------  209 (351)
                                               +             +.+                                      
T Consensus       364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~  443 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG  443 (603)
T ss_pred             ceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc
Confidence                                     0             000                                      


Q ss_pred             e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          210 H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       210 ~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                      . ..+++++|++. .+++|++|+.|++|.+.... .....+..|..+|++++++|++ .+||++...+.+.+||+.+   
T Consensus       444 y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s---  518 (603)
T KOG0318|consen  444 YESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVAS---  518 (603)
T ss_pred             cccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEccc---
Confidence            0 45788999998 79999999999999998532 2333456799999999999999 9999999999999999997   


Q ss_pred             CCCCCcccccCCccccccc-ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          288 DELPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                                      .+. ...+.-|+..|.+++|+|+.. ++|+|+.|..|.||++++..
T Consensus       519 ----------------~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  519 ----------------REVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ----------------CceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh
Confidence                            332 334455999999999999998 99999999999999998653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-34  Score=218.25  Aligned_cols=288  Identities=18%  Similarity=0.320  Sum_probs=223.1

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEe--eecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      -+..++++|...+++..   .+.++.|++|..... .....+.  -.+|+..|++++|+|.+++|+++    +.|.++.|
T Consensus        16 r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a----SFD~t~~I   87 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILAS---CGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA----SFDATVVI   87 (312)
T ss_pred             cEEEEEeccCCceEEEe---ecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEe----eccceEEE
Confidence            35566777764333332   357899999998852 2233332  23799999999999999988885    79999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |.-.       ...++++.++++|..+|.|++|+++|.+ +++++.|+.|-||.+..+......  ....+|++.|..+.
T Consensus        88 w~k~-------~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~--aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   88 WKKE-------DGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECI--AVLQEHTQDVKHVI  157 (312)
T ss_pred             eecC-------CCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEE--eeeccccccccEEE
Confidence            9865       3477899999999999999999999994 666699999999999854433221  23447888999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccC---CcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      |+|....|++++.|++|++|+-..+   .+..++...+  |.+++|+|.|. .|+++++|++++||-... .  +.  ..
T Consensus       158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~-~--~~--~~  231 (312)
T KOG0645|consen  158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT-D--LS--GM  231 (312)
T ss_pred             EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeecc-C--cc--hh
Confidence            9999999999999999999987732   3566666322  99999999997 799999999999999763 2  11  13


Q ss_pred             CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce-eeccccceEEEEEeCCCCCce
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  329 (351)
                      |...++.+.|. +  ..|++++.|+.|++|.......+             ...+++. .-..|...|+++.|.|..+.+
T Consensus       232 ~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~-------------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~  295 (312)
T KOG0645|consen  232 HSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDE-------------PSWNLLAKKEGAHEVDVNSVQWNPKVSNR  295 (312)
T ss_pred             cccceEeeeec-c--cceEeccCCCEEEEEEecCCCCC-------------chHHHHHhhhcccccccceEEEcCCCCCc
Confidence            77899999999 3  58999999999999977641110             0123332 335788899999999965558


Q ss_pred             EEEeeeCCeEEEeecC
Q 018697          330 FASLSYDGRVVVESVK  345 (351)
Q Consensus       330 l~s~~~dg~v~vw~~~  345 (351)
                      |++++.||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=234.65  Aligned_cols=244  Identities=18%  Similarity=0.291  Sum_probs=219.4

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      .+.+.+|.+.|.|+++.|.++++++    |+.|++++|||+.         +++...++.+|...|..+++++-..+ ++
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~t----gs~DrtikIwDla---------tg~LkltltGhi~~vr~vavS~rHpY-lF  209 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFAT----GSADRTIKIWDLA---------TGQLKLTLTGHIETVRGVAVSKRHPY-LF  209 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEe----cCCCceeEEEEcc---------cCeEEEeecchhheeeeeeecccCce-EE
Confidence            3567899999999999998888877    5899999999999         78999999999999999999999996 77


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.|+.|+.||+...+.+     .++.+|.+.|++++.+|.-+.|++++.|..+++||+++...+..+. +|   |.++
T Consensus       210 s~gedk~VKCwDLe~nkvI-----R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V  283 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVI-----RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASV  283 (460)
T ss_pred             EecCCCeeEEEechhhhhH-----HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeE
Confidence            7789999999999953322     3345788899999999999999999999999999999998888888 66   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      .+.|..+ -+++|+.|++|++||++. ++...++..|...|.+++.+|.. ..+|+++.|. |+-|++..          
T Consensus       284 ~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~----------  349 (460)
T KOG0285|consen  284 MCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPE----------  349 (460)
T ss_pred             EeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCc----------
Confidence            9998887 699999999999999997 77788899999999999999998 8999999885 89999998          


Q ss_pred             cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                               +..+..+.+|..-|++++...|+  ++++|++.|.+.+||.++
T Consensus       350 ---------g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  350 ---------GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             ---------cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence                     88899999999999999999886  699999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.8e-35  Score=230.95  Aligned_cols=273  Identities=18%  Similarity=0.306  Sum_probs=222.0

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc---eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      .++.+++|+....    ....+.+|.++|.+++|...+..   ++++    +.|.++++|.++...     ...+.+...
T Consensus       123 YDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa----s~Dqtl~Lw~~~~~~-----~~~~~~~~~  189 (423)
T KOG0313|consen  123 YDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSA----SMDQTLRLWKWNVGE-----NKVKALKVC  189 (423)
T ss_pred             cCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEe----cCCceEEEEEecCch-----hhhhHHhHh
Confidence            4788888887654    34677899999999988544333   6664    899999999987321     123344455


Q ss_pred             eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--------------------CcccccccccCcccceeeeEE
Q 018697          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--------------------NAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus       117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------------------~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      ++|+..|.++...+++.. +++++.|..|.||+......                    ..........+|..+|.++.|
T Consensus       190 ~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             cccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            699999999999999985 77779999999999332110                    000111225689999999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCC
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTH  253 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~  253 (351)
                      ++ ...+++++.|.+|+.||+.++.....+.... +.+++++|... +|++|+.|..|++||.|+...  +.+++.+|..
T Consensus       269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n  346 (423)
T KOG0313|consen  269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN  346 (423)
T ss_pred             cC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence            97 6779999999999999999999988888666 99999999887 999999999999999997543  4567889999


Q ss_pred             ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018697          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (351)
                      .|.++.|+|..+..|++++.|+++++||+++                  ...++..+.+|...|.++.|...+  ++++|
T Consensus       347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS------------------~k~plydI~~h~DKvl~vdW~~~~--~IvSG  406 (423)
T KOG0313|consen  347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS------------------TKAPLYDIAGHNDKVLSVDWNEGG--LIVSG  406 (423)
T ss_pred             hhhheecCCCCceEEEEEecCCeEEEEEecc------------------CCCcceeeccCCceEEEEeccCCc--eEEec
Confidence            9999999999988999999999999999998                  144899999999999999998743  79999


Q ss_pred             eeCCeEEEeecCccc
Q 018697          334 SYDGRVVVESVKPFL  348 (351)
Q Consensus       334 ~~dg~v~vw~~~~~~  348 (351)
                      |.|++|+++.-.+..
T Consensus       407 GaD~~l~i~~~~~~~  421 (423)
T KOG0313|consen  407 GADNKLRIFKGSPIT  421 (423)
T ss_pred             cCcceEEEecccccc
Confidence            999999999876653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-35  Score=250.75  Aligned_cols=280  Identities=18%  Similarity=0.280  Sum_probs=231.4

Q ss_pred             CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018697           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (351)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (351)
                      .|+...+++++.    ...++++.+...    ....+.+|+..|.++....+|-.|++    ++.|.++++|.+++.   
T Consensus       333 G~e~~~laVATN----s~~lr~y~~~~~----~c~ii~GH~e~vlSL~~~~~g~llat----~sKD~svilWr~~~~---  397 (775)
T KOG0319|consen  333 GPEESHLAVATN----SPELRLYTLPTS----YCQIIPGHTEAVLSLDVWSSGDLLAT----GSKDKSVILWRLNNN---  397 (775)
T ss_pred             CCccceEEEEeC----CCceEEEecCCC----ceEEEeCchhheeeeeecccCcEEEE----ecCCceEEEEEecCC---
Confidence            445556666653    355666655543    23467899999999995555644444    489999999988421   


Q ss_pred             CCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc----cccCcccceeeeEECCCC
Q 018697          105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QSSGMLHYLSGGAWDPHD  180 (351)
Q Consensus       105 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~  180 (351)
                        ....-++....+|+..|.+++++..+..+++++|.|.++++|++...+........    ....|...|++++.+|+.
T Consensus       398 --~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  398 --CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             --cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence              11345566778999999999998888876666799999999999863222221111    223567799999999999


Q ss_pred             CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeE
Q 018697          181 VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA  257 (351)
Q Consensus       181 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  257 (351)
                      +.+++|+.|.+.++|+++......++. +|   +.++.|+|..+ +++|++.|++|+||.+.+ ..+++++.+|+..|..
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlr  552 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLR  552 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeEe
Confidence            999999999999999999877777777 67   99999999998 999999999999999998 7799999999999999


Q ss_pred             EEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC
Q 018697          258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG  337 (351)
Q Consensus       258 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  337 (351)
                      +.|-.++ ..|++++.||.|++|++.+                   .+++.++..|++.|++++-+|... ++++|+.||
T Consensus       553 a~F~~~~-~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg  611 (775)
T KOG0319|consen  553 ASFIRNG-KQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDG  611 (775)
T ss_pred             eeeeeCC-cEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeecCccc-eeEecCCCe
Confidence            9999999 9999999999999999999                   999999999999999999999998 899999999


Q ss_pred             eEEEeecC
Q 018697          338 RVVVESVK  345 (351)
Q Consensus       338 ~v~vw~~~  345 (351)
                      .|.+|.=.
T Consensus       612 ~i~~wkD~  619 (775)
T KOG0319|consen  612 RIIFWKDV  619 (775)
T ss_pred             EEEEeecC
Confidence            99999743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-34  Score=246.02  Aligned_cols=288  Identities=14%  Similarity=0.235  Sum_probs=237.9

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      ++-..-.+.+..+++....+++|-    ..+.++++.++.-.   ....+.--+.+|..++|+..|.+|+.+   ++.-|
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgF----ssG~f~LyelP~f~---lih~LSis~~~I~t~~~N~tGDWiA~g---~~klg  330 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGF----SSGEFGLYELPDFN---LIHSLSISDQKILTVSFNSTGDWIAFG---CSKLG  330 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEe----cCCeeEEEecCCce---EEEEeecccceeeEEEecccCCEEEEc---CCccc
Confidence            333334566677788877777763    45677788877643   334445556799999999999999987   47778


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .+.||+..         ...-+...++|...+++++++|||+. +++++.||.|+|||...+-....     ...|+..|
T Consensus       331 QLlVweWq---------sEsYVlKQQgH~~~i~~l~YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vT-----FteHts~V  395 (893)
T KOG0291|consen  331 QLLVWEWQ---------SESYVLKQQGHSDRITSLAYSPDGQL-IATGAEDGKVKVWNTQSGFCFVT-----FTEHTSGV  395 (893)
T ss_pred             eEEEEEee---------ccceeeeccccccceeeEEECCCCcE-EEeccCCCcEEEEeccCceEEEE-----eccCCCce
Confidence            99999998         44566777899999999999999993 66678999999999986543332     33578899


Q ss_pred             eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCC-eEEEEecccCCcceeE
Q 018697          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQE  247 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~  247 (351)
                      +++.|+..++.+++.+-||+|+.||+......+++..+.   ..|++..|.|. ++..|+.|. .|.+|++++ ++.+..
T Consensus       396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT-GqllDi  473 (893)
T KOG0291|consen  396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT-GQLLDI  473 (893)
T ss_pred             EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec-Ceeeeh
Confidence            999999999999999999999999999998888887555   88999999998 777787775 799999998 889999


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                      +.+|++||.+++|+|.+ ..|++++.|.+|++||+-..                  ...+.++. +...+..++|+|+|+
T Consensus       474 LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s------------------~~~vEtl~-i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  474 LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSS------------------SGTVETLE-IRSDVLAVSFRPDGK  533 (893)
T ss_pred             hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeecc------------------CceeeeEe-eccceeEEEEcCCCC
Confidence            99999999999999999 99999999999999999761                  34555554 445699999999999


Q ss_pred             ceEEEeeeCCeEEEeecCcc
Q 018697          328 WIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~~~  347 (351)
                       -+|.+..||.|.+||++..
T Consensus       534 -elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  534 -ELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             -eEEEEEecceEEEEEhhhc
Confidence             7999999999999998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.5e-35  Score=224.69  Aligned_cols=251  Identities=18%  Similarity=0.297  Sum_probs=211.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|++.|..+.|+|+|..|++    ||.|..|.+|++..        ..+....+++|+++|+.+.|.++++. +++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aS----gG~Dr~I~LWnv~g--------dceN~~~lkgHsgAVM~l~~~~d~s~-i~S  107 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFAS----GGSDRAIVLWNVYG--------DCENFWVLKGHSGAVMELHGMRDGSH-ILS  107 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEee----cCCcceEEEEeccc--------cccceeeeccccceeEeeeeccCCCE-EEE
Confidence            457899999999999999988888    58999999999763        44566678899999999999999995 777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce-eEEEEc
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDY  216 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~  216 (351)
                      ++.|.+|+.||+++++...+..     +|...++++.-+.-|..++ +++.|+++++||+++...+.+++... ++++.|
T Consensus       108 ~gtDk~v~~wD~~tG~~~rk~k-----~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f  182 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETGKRIRKHK-----GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGF  182 (338)
T ss_pred             ecCCceEEEEecccceeeehhc-----cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEe
Confidence            7999999999999876655443     4666788887554555554 56789999999999999998887555 999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      ..++. -+.+|+-|+.|++||+|. ...+..+.+|..+|+.+..+|+| .++.+-+.|.++++||++...+.        
T Consensus       183 ~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~--------  251 (338)
T KOG0265|consen  183 KDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPS--------  251 (338)
T ss_pred             ccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCC--------
Confidence            99998 688999999999999998 66899999999999999999999 99999999999999999863221        


Q ss_pred             cCCcccccccceeecccc----ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          297 ESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                             ..++..+.+|.    .....++|+|++. .+.+|+.|+.+++||...
T Consensus       252 -------~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  252 -------QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS  297 (338)
T ss_pred             -------CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence                   34577776653    2356789999998 799999999999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-33  Score=234.59  Aligned_cols=279  Identities=20%  Similarity=0.366  Sum_probs=231.8

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.++++...++.+.    .++.+.+|++....   ....+..|...+..+.|+|+++.++++    +.++.|++
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~i~i   77 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASG----SSDKTIRL   77 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEE----cCCCeEEE
Confidence            45677788888888888775    47899999988654   334566899999999999999888775    67999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |++.         ..+.+..+..|...|.++.|++++. ++++++.++.|.+||+.+......+.     .|...+.+++
T Consensus        78 ~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~  142 (289)
T cd00200          78 WDLE---------TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVA  142 (289)
T ss_pred             EEcC---------cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEE
Confidence            9998         4466777888999999999999966 34444559999999998543332222     4556899999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (351)
                      |+|++.++++++.++.|++||+++++....+....  +.+++|+|+++ .+++++.++.|++||++. .+.+..+..|..
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~  220 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGHEN  220 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC-CceecchhhcCC
Confidence            99998877777779999999999888777776322  99999999997 677788899999999987 667777878899


Q ss_pred             ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018697          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (351)
                      .+.++.|+|++ .++++++.|+.|++||+..                   +..+..+..|...|.+++|+|++. +++++
T Consensus       221 ~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  279 (289)
T cd00200         221 GVNSVAFSPDG-YLLASGSEDGTIRVWDLRT-------------------GECVQTLSGHTNSVTSLAWSPDGK-RLASG  279 (289)
T ss_pred             ceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC-------------------ceeEEEccccCCcEEEEEECCCCC-EEEEe
Confidence            99999999997 8999988899999999997                   777888888988999999999988 89999


Q ss_pred             eeCCeEEEee
Q 018697          334 SYDGRVVVES  343 (351)
Q Consensus       334 ~~dg~v~vw~  343 (351)
                      +.|+.|++|+
T Consensus       280 ~~d~~i~iw~  289 (289)
T cd00200         280 SADGTIRIWD  289 (289)
T ss_pred             cCCCeEEecC
Confidence            9999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.7e-34  Score=251.90  Aligned_cols=284  Identities=19%  Similarity=0.326  Sum_probs=234.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+.+..+.+++++..++.++    .++.+.+|....... .....+.+|...|.+++|+|+++.++++    +.|++|+|
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~----~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~----s~D~tiri  229 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAAS----SDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSG----SDDKTLRI  229 (456)
T ss_pred             cCceEEEEEcCCCCeEEEcc----CCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEe----cCCceEEE
Confidence            45666677888887766653    567888888744331 2334457999999999999999988875    79999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||+..        ....++++.+|...|++++|+|+++ ++++++.|++|+|||+.++....     ...+|...|.+++
T Consensus       230 wd~~~--------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~-----~l~~hs~~is~~~  295 (456)
T KOG0266|consen  230 WDLKD--------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVR-----KLKGHSDGISGLA  295 (456)
T ss_pred             eeccC--------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEE-----eeeccCCceEEEE
Confidence            99952        5588899999999999999999994 57777999999999999733222     2346777999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      |++++..|++++.|+.|++||+.++.  +...+....    +.++.|+|++. +++++..|+.+++||++. ...+..+.
T Consensus       296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~  373 (456)
T KOG0266|consen  296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYT  373 (456)
T ss_pred             ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC-Ccceeeec
Confidence            99999999999999999999999988  334444222    69999999999 788999999999999997 66788888


Q ss_pred             CCCCc---eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-cceEEEEEeCCC
Q 018697          250 GHTHW---TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSR  325 (351)
Q Consensus       250 ~~~~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  325 (351)
                      +|...   +.+...++.+ .++++|+.|+.|++||+.+                   +..+..+.+| ...+..++|+|.
T Consensus       374 ~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s-------------------~~~~~~l~~h~~~~~~~~~~~~~  433 (456)
T KOG0266|consen  374 GHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS-------------------GGILQRLEGHSKAAVSDLSSHPT  433 (456)
T ss_pred             ccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCc-------------------cchhhhhcCCCCCceeccccCCC
Confidence            88775   3344457777 9999999999999999998                   8888899999 888999999999


Q ss_pred             CCceEEEee--eCCeEEEeecC
Q 018697          326 EPWIFASLS--YDGRVVVESVK  345 (351)
Q Consensus       326 ~~~~l~s~~--~dg~v~vw~~~  345 (351)
                      .. ++++++  .|+.+++|..+
T Consensus       434 ~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  434 EN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cC-eeeecCcCCCceEEEecCC
Confidence            88 888888  79999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-32  Score=258.92  Aligned_cols=292  Identities=14%  Similarity=0.231  Sum_probs=216.8

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC---CCeE-EEEeeecCCcceeeeeeCCCC-CceEEEEeecCCcc
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG---GTEL-ICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESY   91 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~~~~~d~   91 (351)
                      ..+..+.+++++..++.|.    .++.|.+|++...   .... .......+...|.+++|+|.. ..|++    ++.|+
T Consensus       484 ~~V~~i~fs~dg~~latgg----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las----~~~Dg  555 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAG----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS----SNFEG  555 (793)
T ss_pred             CcEEEEEECCCCCEEEEEe----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE----EeCCC
Confidence            3467778888888777764    6899999987531   1100 011122345789999998864 45554    37899


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      +|++||+.         +.+.+..+.+|.+.|++++|+|....++++++.|+.|++||+.++.....+..      ...+
T Consensus       556 ~v~lWd~~---------~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v  620 (793)
T PLN00181        556 VVQVWDVA---------RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANI  620 (793)
T ss_pred             eEEEEECC---------CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCe
Confidence            99999998         56778888999999999999974433477778999999999986544332221      2378


Q ss_pred             eeeEEC-CCCCcEEEeecCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-----
Q 018697          172 SGGAWD-PHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----  241 (351)
Q Consensus       172 ~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----  241 (351)
                      .++.|+ +++..+++|+.|+.|++||+++... ...+. +|   |.++.|. ++. .+++++.|++|++||++..     
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence            899995 5688999999999999999987653 33443 45   9999997 555 7899999999999999742     


Q ss_pred             CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc--eeeccccceEEE
Q 018697          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NSYSDYEDSVYG  319 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~  319 (351)
                      ..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+........    .....    ....+  .....|...|.+
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~----s~~~~----~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVL----SYKFK----TIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceE----EEecc----cCCcccccccCCCCcEEEE
Confidence            24678899999999999999999 999999999999999986521000    00000    00000  112345677999


Q ss_pred             EEeCCCCCceEEEeeeCCeEEEeec
Q 018697          320 LAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ++|+|++. .|++++.||.|+||++
T Consensus       769 v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCC-eEEEecCCCcEEEEec
Confidence            99999998 8999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.5e-33  Score=219.75  Aligned_cols=280  Identities=16%  Similarity=0.235  Sum_probs=226.6

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...+-+++.+|+....+.|    +.++.-.+|+.....   ....+.+|.+.|.++.|+.++.+|++    |+-+|.|+
T Consensus        63 H~~svFavsl~P~~~l~aTG----GgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLAT----GdmsG~v~  131 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNNLVATG----GGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLAT----GDMSGKVL  131 (399)
T ss_pred             cCCceEEEEeCCCCceEEec----CCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEe----cCCCccEE
Confidence            44556667777744444433    678899999998865   44667899999999999999988877    58999999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      ||+..         +......+...-..+.-+.|+|.+. ++++++.||.+.+|.+.+. ...    +...+|..++++=
T Consensus       132 v~~~s---------tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~----kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  132 VFKVS---------TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALC----KVMSGHNSPCTCG  196 (399)
T ss_pred             EEEcc---------cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-cee----eEecCCCCCcccc
Confidence            99998         5555556655667888999999777 5888899999999999863 222    2344688899999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---------------------------------------------
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---------------------------------------------  209 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------------  209 (351)
                      .|.|+|+.++++..||+|++|++.+++++..+...                                             
T Consensus       197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            99999999999999999999999998766555410                                             


Q ss_pred             -----e---eEEE---EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          210 -----H---VRNV---DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       210 -----~---v~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                           +   +.++   .++..-+ ++|+|+-||+|.|||+.. .+ ++..-.|..+|..+.|-+ . .+|++++.+|.|+
T Consensus       277 ~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~~-~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA-ST-LRHICEHEDGVTKLKWLN-T-DYLLTACANGKVR  351 (399)
T ss_pred             cccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc-ch-hheeccCCCceEEEEEcC-c-chheeeccCceEE
Confidence                 0   1122   2222334 678899999999999986 43 444456999999999999 4 7999999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .||.++                   ++++.++.+|...|.+++.+|+.+ +++++|.|++.+|++++
T Consensus       352 ~wDaRt-------------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  352 QWDART-------------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeeccc-------------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            999999                   999999999999999999999998 89999999999999976

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-34  Score=215.72  Aligned_cols=264  Identities=15%  Similarity=0.189  Sum_probs=217.4

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+.+|+.+++.+.|+.+|..|+++    +.|.+..||-..         +++.+-++.+|++.|+|+...-+.++ ++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFsc----aKD~~~~vw~s~---------nGerlGty~GHtGavW~~Did~~s~~-liTG   70 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSC----AKDSTPTVWYSL---------NGERLGTYDGHTGAVWCCDIDWDSKH-LITG   70 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEe----cCCCCceEEEec---------CCceeeeecCCCceEEEEEecCCcce-eeec
Confidence            456899999999999999999986    799999999876         67899999999999999999998885 8888


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEccc-------CCcCceee
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS-------MGKTNSIE  207 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~~  207 (351)
                      +.|.++++||+.++++........      +|..+.|+++++++++...     .+.|.++|++.       .++...+.
T Consensus        71 SAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             cccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            999999999999987776665544      8999999999998877653     47899999983       34455555


Q ss_pred             cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      ...  ++.+-|.|-++ .|++|.+||.|.+||.++..+.+..-+.|...|+.++++|+. .+++|++.|.+-++||+++.
T Consensus       145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence            333  99999999998 799999999999999998666777778899999999999999 99999999999999999876


Q ss_pred             CCC-----CCCCcccccCCcc-------------------------------cccccceeeccccceEEEEEeCCCCCce
Q 018697          286 NHD-----ELPSESLVESPNQ-------------------------------RANSLLNSYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       286 ~~~-----~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (351)
                      ...     +.+.+.+..+|..                               --.+.+..+++|-++|++++|+|+|+ .
T Consensus       223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s  301 (327)
T KOG0643|consen  223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S  301 (327)
T ss_pred             eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence            321     1122222222210                               11234556789999999999999999 7


Q ss_pred             EEEeeeCCeEEEeecCc
Q 018697          330 FASLSYDGRVVVESVKP  346 (351)
Q Consensus       330 l~s~~~dg~v~vw~~~~  346 (351)
                      .++|+.||.||+...++
T Consensus       302 YsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccCCCCceEEEEEecc
Confidence            99999999999987764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=213.11  Aligned_cols=247  Identities=13%  Similarity=0.259  Sum_probs=200.1

Q ss_pred             eeeeeCCC-CCceEEEE---eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           69 WDLSSCPF-DQRIFSTV---FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        69 ~~i~~~~~-~~~l~~~~---~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      .++.|||- ..+|++++   +.=...|.+.|-++..      .+.......+ .-.+.+..++|+++....+++++.||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~------~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGS   84 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD------PKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGS   84 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCC------CCCeEEEEee-ecccceeEeeecCCCcceEEEEecCce
Confidence            46788884 22333332   1113456788887751      1123334444 356789999999999887888899999


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK  220 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~  220 (351)
                      +++||+........    ..+.|...|.++.|++..+ .+++++.|++|++||...++.+.++. +|   |...+|+|..
T Consensus        85 Lrl~d~~~~s~Pi~----~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   85 LRLFDLTMPSKPIH----KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHI  159 (311)
T ss_pred             EEEeccCCCCcchh----HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCC
Confidence            99999764433322    2346788999999998654 46677899999999999999999988 56   9999999999


Q ss_pred             CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      ++++++++.|+++++||+|.+++.+. +..|...|.++.|+...+.+++||+.|+.|+.||+++                
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~----------------  222 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN----------------  222 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh----------------
Confidence            99999999999999999999877655 8899999999999998889999999999999999997                


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        ...++..+.+|.-.|+.+.|||....+|++++.|-++||||...
T Consensus       223 --~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  223 --LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             --ccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence              26778899999999999999998888999999999999999863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=247.89  Aligned_cols=246  Identities=21%  Similarity=0.371  Sum_probs=208.1

Q ss_pred             EeeecC-CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce--eeeeeeccccceeEEEecCCCCCc
Q 018697           59 EGLFSH-PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        59 ~~~~~h-~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      ..+..| ...|.++.|+++++.++++    +.++.+++|+..         ..+  ....+.+|...|.+++|+|++.. 
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~---------~~~~~~~~~l~~h~~~v~~~~fs~d~~~-  217 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAA----SSDGLIRIWKLE---------GIKSNLLRELSGHTRGVSDVAFSPDGSY-  217 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEc----cCCCcEEEeecc---------cccchhhccccccccceeeeEECCCCcE-
Confidence            334344 6899999999999997775    799999999986         333  66677899999999999999993 


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~  212 (351)
                      +++++.|++|+|||+.......+.+    .+|...|++++|+|+++.+++|+.|++|++||++++++...+. +|   |.
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~~l----~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLKTL----KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEEEe----cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceE
Confidence            6677899999999995433333333    3788899999999999999999999999999999999988888 55   99


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      +++|++++. ++++++.|+.|++||+.+ +.  ++..+..+...  ++.++|+|++ .+++++..|+.+++||++.    
T Consensus       293 ~~~f~~d~~-~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~----  365 (456)
T KOG0266|consen  293 GLAFSPDGN-LLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS----  365 (456)
T ss_pred             EEEECCCCC-EEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC----
Confidence            999999998 789999999999999997 54  45667666655  9999999999 9999999999999999998    


Q ss_pred             CCCCcccccCCcccccccceeeccccce---EEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                     ...+..+.+|...   +.+...++.+. ++++++.|+.|++|++.+
T Consensus       366 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  366 ---------------GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             ---------------CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence                           7888888888764   34445577888 899999999999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=210.79  Aligned_cols=243  Identities=16%  Similarity=0.207  Sum_probs=206.6

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+..|+++|..+.|+-+|++.+++    |.|.+|++|+..         .+.+++++.+|..+|..++.+.|+.. ++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltc----GsdrtvrLWNp~---------rg~liktYsghG~EVlD~~~s~Dnsk-f~   75 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTC----GSDRTVRLWNPL---------RGALIKTYSGHGHEVLDAALSSDNSK-FA   75 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEc----CCCceEEeeccc---------ccceeeeecCCCceeeeccccccccc-cc
Confidence            34567899999999999999999885    899999999987         78999999999999999999999885 77


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC--CcCceeecce--eEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHAH--VRN  213 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~--v~~  213 (351)
                      +++.|..|.+||+++++...+..     +|...|+.++|+.+...+++|+.|.++++||-++.  ++++.+....  |.+
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecc-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            77889999999999876555443     67779999999999999999999999999999865  4556665444  889


Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                      +..+..   .+++|+.||+++.||+|. ++....+  ...+|++++|++++ +..+.++.|+++++.|-.+         
T Consensus       151 i~v~~h---eIvaGS~DGtvRtydiR~-G~l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~t---------  214 (307)
T KOG0316|consen  151 IDVAEH---EIVAGSVDGTVRTYDIRK-GTLSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKET---------  214 (307)
T ss_pred             EEeccc---EEEeeccCCcEEEEEeec-ceeehhh--cCCcceeEEecCCC-CEEEEeeccceeeecccch---------
Confidence            988643   688899999999999997 6544444  35699999999999 9999999999999999999         


Q ss_pred             ccccCCcccccccceeeccccceEE--EEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSVY--GLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                ++++..+++|.+.=.  ..+++.... .+++|++||.|++||+.+
T Consensus       215 ----------GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  215 ----------GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ----------hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecc
Confidence                      999999999976433  445666666 899999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.9e-33  Score=220.88  Aligned_cols=291  Identities=17%  Similarity=0.301  Sum_probs=240.3

Q ss_pred             ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018697           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~   92 (351)
                      +....|+..+..+|....|+.|+    .++.+.+|++...  + +...+.+|...|..+++|+...+++++    +.|+.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg--~-LkltltGhi~~vr~vavS~rHpYlFs~----gedk~  216 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATG--Q-LKLTLTGHIETVRGVAVSKRHPYLFSA----GEDKQ  216 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecC----CCceeEEEEcccC--e-EEEeecchhheeeeeeecccCceEEEe----cCCCe
Confidence            34567888999999999998875    5889999998874  2 346778999999999999999999996    79999


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      |+-||++         ..+.++.+.+|-+.|.|++..|.-. ++++++.|.+++|||+++....     ....+|..+|.
T Consensus       217 VKCwDLe---------~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V-----~~l~GH~~~V~  281 (460)
T KOG0285|consen  217 VKCWDLE---------YNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASV-----HVLSGHTNPVA  281 (460)
T ss_pred             eEEEech---------hhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceE-----EEecCCCCcce
Confidence            9999999         6788999999999999999999887 3777799999999999964322     23457888999


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      .+.+.|-+..+++++.|++|++||++.++...++....  +.+++.+|... .+++++.| .|+-|++.. +..++.+.+
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nlsg  358 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLSG  358 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhcccc
Confidence            99999999999999999999999999999888877333  99999999986 78888776 799999997 667888999


Q ss_pred             CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceE
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (351)
                      |..-|++++.+.|+  ++++|+.+|.+.+||.+++..-+...          .......+ ..+..|.+.+|...|. .|
T Consensus       359 h~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~----------t~vqpGSl-~sEagI~as~fDktg~-rl  424 (460)
T KOG0285|consen  359 HNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQ----------TIVQPGSL-ESEAGIFASCFDKTGS-RL  424 (460)
T ss_pred             ccceeeeeeeccCc--eEEEcCCceEEEEEecCcCccccccc----------ccccCCcc-ccccceeEEeecccCc-eE
Confidence            99999999999886  89999999999999999832211100          00000111 1245689999999998 79


Q ss_pred             EEeeeCCeEEEeecCc
Q 018697          331 ASLSYDGRVVVESVKP  346 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~  346 (351)
                      ++|..|.+|++|+-++
T Consensus       425 it~eadKtIk~~keDe  440 (460)
T KOG0285|consen  425 ITGEADKTIKMYKEDE  440 (460)
T ss_pred             EeccCCcceEEEeccc
Confidence            9999999999998654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-32  Score=226.54  Aligned_cols=300  Identities=15%  Similarity=0.185  Sum_probs=230.0

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +.+++..+..+|++.+|+..    +.++++++++=-....--....-.+|++.|.+++|+||+.+++++    +.|.+++
T Consensus       189 HskFV~~VRysPDG~~Fat~----gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~----SaDkt~K  260 (603)
T KOG0318|consen  189 HSKFVNCVRYSPDGSRFATA----GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV----SADKTIK  260 (603)
T ss_pred             cccceeeEEECCCCCeEEEe----cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe----cCCceEE
Confidence            45788888889998888753    568888887755433322223345899999999999999999997    7999999


Q ss_pred             EEEcccccC----------------------------------CCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           95 IWQIPELYG----------------------------------QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        95 vw~~~~~~~----------------------------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      |||+.+..-                                  -.+.....++..+.+|...|+++..+|++++ +++++
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~Sgs  339 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGS  339 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeec
Confidence            999975310                                  0022233467778899999999999999975 78889


Q ss_pred             cCCcEEEEEcCCCCCCccc-------------------cc-----------c---ccc----------------------
Q 018697          141 DEENIFLWSLDCSNKNAQV-------------------QS-----------K---QSS----------------------  165 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~-------------------~~-----------~---~~~----------------------  165 (351)
                      .||.|.-|+..++......                   +.           .   ...                      
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~  419 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT  419 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence            9999999998764321100                   00           0   000                      


Q ss_pred             ---------------------CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-eecce---eEEEEcCCCC
Q 018697          166 ---------------------GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IEHAH---VRNVDYDTKK  220 (351)
Q Consensus       166 ---------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~---v~~~~~~~~~  220 (351)
                                           .......+++++|++..+++|+.|+.|++|.+........ ....|   +++++++|++
T Consensus       420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~  499 (603)
T KOG0318|consen  420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG  499 (603)
T ss_pred             EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence                                 0001245668999999999999999999999987654332 22233   9999999999


Q ss_pred             CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      . +|++|...+.+.+||+.+.......+.-|...|.+++|+|++ .++|||+.|-.|.||++...               
T Consensus       500 ~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP---------------  562 (603)
T KOG0318|consen  500 A-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKP---------------  562 (603)
T ss_pred             c-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccCh---------------
Confidence            9 799999999999999987444444555699999999999999 99999999999999999871               


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                         .+.+....+|...|+.+.|-.+.  .+++.+.|..|++|++.
T Consensus       563 ---~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  563 ---AKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ---hhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence               34455667898889999998654  58999999999999975

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-34  Score=227.40  Aligned_cols=263  Identities=16%  Similarity=0.276  Sum_probs=213.5

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      ++.|.+|+...   ......+.||.+.|.|+.|..  +.+++    |++|.+|+|||+.         +++++.++-.|.
T Consensus       216 DnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviis----GSSDsTvrvWDv~---------tge~l~tlihHc  277 (499)
T KOG0281|consen  216 DNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVS----GSSDSTVRVWDVN---------TGEPLNTLIHHC  277 (499)
T ss_pred             cCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEe----cCCCceEEEEecc---------CCchhhHHhhhc
Confidence            44554444332   334466889999999999974  34444    6899999999999         789999999999


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                      ..|..+.|+..   ++++++.|.++.+||+....  .........+|...|+.+.|+  .+++++++.|.+|++|++.++
T Consensus       278 eaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  278 EAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             ceeEEEEEeCC---EEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            99999999864   37788999999999998643  334444566888999999996  569999999999999999999


Q ss_pred             CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      +.+.++. +|   |.|+.+  .++ ++++|++|.+|++||+.. +.+++.+++|+.-|.++.|..   ..+++|+.||.|
T Consensus       351 efvRtl~-gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGki  422 (499)
T KOG0281|consen  351 EFVRTLN-GHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKI  422 (499)
T ss_pred             eeehhhh-cccccceehhc--cCe-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecC---ceeeeccccceE
Confidence            9999988 66   888877  355 899999999999999997 889999999999999999986   679999999999


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      ++||+...-....+          ...-++.++..|++.|..+.|..  . .+++++.|.+|.|||+....+
T Consensus       423 kvWdl~aaldpra~----------~~~~Cl~~lv~hsgRVFrLQFD~--f-qIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  423 KVWDLQAALDPRAP----------ASTLCLRTLVEHSGRVFRLQFDE--F-QIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             EEEecccccCCccc----------ccchHHHhhhhccceeEEEeecc--e-EEEeccCCCeEEEEEcCCCCc
Confidence            99999873211110          01346777788999999999964  3 688999999999999876543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-33  Score=233.13  Aligned_cols=276  Identities=22%  Similarity=0.308  Sum_probs=234.4

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      -+..+.++|....++.+-    .++.+.+|++...   ...+.+.-.+-+|++..|-+..+++++    |+.|..|+||+
T Consensus        15 RVKsVd~HPtePw~la~L----ynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~----GsDD~~IrVfn   83 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAAL----YNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVT----GSDDMQIRVFN   83 (794)
T ss_pred             ceeeeecCCCCceEEEee----ecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEE----ecCCceEEEEe
Confidence            466777888887777763    3688888888763   344666667789999999998889888    48999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ..         +++.+..+..|.+-|.|++.+|..++ ++++++|..|++||.+..-.+.+    ...+|...|.+++|+
T Consensus        84 yn---------t~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~q----tfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   84 YN---------TGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQ----TFEGHEHYVMQVAFN  149 (794)
T ss_pred             cc---------cceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeee----EEcCcceEEEEEEec
Confidence            98         88999999999999999999999995 77889999999999996433333    345888999999999


Q ss_pred             CCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCC-cEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018697          178 PHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       178 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      |.+ +.+++++-|++|++|.+.+..+..+++ +|   |+|+.+-+-|. -++++|++|.+|+|||.++ +.+++++++|.
T Consensus       150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt  227 (794)
T KOG0276|consen  150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHT  227 (794)
T ss_pred             CCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhccc
Confidence            965 568889999999999999998988988 77   99999987652 2799999999999999998 88999999999


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      ..|+.+.|+|.- .+++||+.||+++||+..+                   -++..++.-.-+.|++++-.+.+. .++.
T Consensus       228 ~Nvs~v~fhp~l-piiisgsEDGTvriWhs~T-------------------y~lE~tLn~gleRvW~I~~~k~~~-~i~v  286 (794)
T KOG0276|consen  228 NNVSFVFFHPEL-PIIISGSEDGTVRIWNSKT-------------------YKLEKTLNYGLERVWCIAAHKGDG-KIAV  286 (794)
T ss_pred             ccceEEEecCCC-cEEEEecCCccEEEecCcc-------------------eehhhhhhcCCceEEEEeecCCCC-eEEE
Confidence            999999999999 9999999999999999988                   566666666667899999888777 6888


Q ss_pred             eeeCCeEEE
Q 018697          333 LSYDGRVVV  341 (351)
Q Consensus       333 ~~~dg~v~v  341 (351)
                      |.++|.|.+
T Consensus       287 G~Deg~i~v  295 (794)
T KOG0276|consen  287 GFDEGSVTV  295 (794)
T ss_pred             eccCCcEEE
Confidence            877776643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-33  Score=237.91  Aligned_cols=268  Identities=20%  Similarity=0.324  Sum_probs=219.0

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeee-CCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSS-CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      .+.++.+++...   ....+.+.|..+.|.+++| .|+.+.|+++    .+.+.+|+|++.         ...+ ..+.+
T Consensus       301 aeQnl~l~d~~~---l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA----TNs~~lr~y~~~---------~~~c-~ii~G  363 (775)
T KOG0319|consen  301 AEQNLFLYDEDE---LTIVKQIVGYNDEILDMKFLGPEESHLAVA----TNSPELRLYTLP---------TSYC-QIIPG  363 (775)
T ss_pred             ccceEEEEEccc---cEEehhhcCCchhheeeeecCCccceEEEE----eCCCceEEEecC---------CCce-EEEeC
Confidence            355666664443   2345778899999999998 5666777776    577899999887         3333 37889


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~  197 (351)
                      |++.|.++....+|. ++++++.|.++++|.++++ ...........+|...|.+++++..+. .+++++.|+++++|++
T Consensus       364 H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~-~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  364 HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNN-CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             chhheeeeeecccCc-EEEEecCCceEEEEEecCC-cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            999999999666664 4666699999999999543 333334444568999999999977654 5777899999999999


Q ss_pred             ccCCcC---cee-----ecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC
Q 018697          198 RSMGKT---NSI-----EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (351)
Q Consensus       198 ~~~~~~---~~~-----~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (351)
                      ...+..   ..+     ...|   |++++++|+.. +++||+.|.+.+||+++. .....++.+|...|.++.|+|.. .
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q  518 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-Q  518 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEecccc-c
Confidence            863211   111     1234   99999999998 999999999999999996 67889999999999999999998 9


Q ss_pred             eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .++|+|.|++|+||.+.+                   ..++.++.+|+..|..+.|-.++. .|++++.||.+++|++++
T Consensus       519 ~laT~SgD~TvKIW~is~-------------------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  519 LLATCSGDKTVKIWSIST-------------------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKT  578 (775)
T ss_pred             eeEeccCCceEEEEEecc-------------------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccc
Confidence            999999999999999999                   999999999999999999999999 899999999999999987


Q ss_pred             ccc
Q 018697          347 FLS  349 (351)
Q Consensus       347 ~~~  349 (351)
                      ...
T Consensus       579 ~eC  581 (775)
T KOG0319|consen  579 NEC  581 (775)
T ss_pred             hhh
Confidence            543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-33  Score=243.46  Aligned_cols=280  Identities=19%  Similarity=0.351  Sum_probs=234.5

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      -+..++++|....++.+-    +.+.|++|++.-.   .+...+..|.++|..++|+|.++.+++    ||.|.+|+||+
T Consensus        11 RvKglsFHP~rPwILtsl----HsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVS----GGDDykIkVWn   79 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSL----HSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVS----GGDDYKIKVWN   79 (1202)
T ss_pred             cccceecCCCCCEEEEee----cCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEe----cCCccEEEEEe
Confidence            366788999999888763    5788888887653   245778899999999999999988888    58999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ..         +.+++.++.+|-+-|..+.|++.-++ ++++|+|.+|+||+..+.+....     ..||...|.|.+|+
T Consensus        80 Yk---------~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iav-----ltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   80 YK---------TRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAV-----LTGHNHYVMCAQFH  144 (1202)
T ss_pred             cc---------cceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEE-----EecCceEEEeeccC
Confidence            98         78999999999999999999999997 77779999999999997544332     23788899999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCC----------------------------cCceeecce---eEEEEcCCCCCcEEEE
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMG----------------------------KTNSIEHAH---VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~----------------------------~~~~~~~~~---v~~~~~~~~~~~~l~~  226 (351)
                      |....+++++-|-+|++||+..-+                            .+..+-.+|   |+-++|+|.-+ ++++
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS  223 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS  223 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence            999999999999999999985211                            011112345   99999999998 9999


Q ss_pred             ecCCCeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccc
Q 018697          227 AADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (351)
                      |++|..|++|.+...+. .+.+..+|.+.|+++-|+|.. .++++.+.|++|++||+..                   .+
T Consensus       224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~k-------------------Rt  283 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTK-------------------RT  283 (1202)
T ss_pred             cCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccc-------------------cc
Confidence            99999999999985221 345667999999999999998 9999999999999999998                   88


Q ss_pred             cceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+++++...+.-+.++-+|... ++ +++.|+-+.||.++.
T Consensus       284 ~v~tfrrendRFW~laahP~lN-Lf-AAgHDsGm~VFkleR  322 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAAHPELN-LF-AAGHDSGMIVFKLER  322 (1202)
T ss_pred             ceeeeeccCCeEEEEEecCCcc-ee-eeecCCceEEEEEcc
Confidence            8999987778899999999987 44 556677788888864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=8.5e-33  Score=227.87  Aligned_cols=302  Identities=18%  Similarity=0.300  Sum_probs=232.2

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEE-Eeee-cCCcceeeeeeCCCCCceEEEEeecCC
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-~h~~~v~~i~~~~~~~~l~~~~~~~~~   89 (351)
                      ++...+.|.++..++.+.||+.|++    +..+.+|+|..-...+.. +.+. .-...|++++|++.+..|+++    +.
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv----sg  234 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV----SG  234 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE----ec
Confidence            4556899999999999999999864    789999999865433222 2222 233689999999999998887    35


Q ss_pred             cceEEEEEccccc-CCCCCCc--ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-cc
Q 018697           90 SYGAAIWQIPELY-GQLNSPQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SS  165 (351)
Q Consensus        90 d~~i~vw~~~~~~-~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~  165 (351)
                      ....+|+|-.... .....+.  ..-+..-++|...++|.+|+|..+..+++++.||+++|||++......+++... ..
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            5578888865100 0000000  011223468999999999999998889999999999999999766555554433 23


Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      +..-+++.++|+|+++.|++|+.||.|.+||.....  +...+..+|     |+|++|+++|+ +|++-+.|+++++||+
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeec
Confidence            344578999999999999999999999999986543  333444455     99999999998 7999999999999999


Q ss_pred             ccCCcceeEeeCCC--CceeEEEecCCCCCeEEEeeC------CCeEEEEEcCCCCCCCCCCcccccCCcccccccceee
Q 018697          239 RMLKAPIQELPGHT--HWTWAVCCNPEYDGFILSAGT------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (351)
Q Consensus       239 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (351)
                      |..++++....+-.  .+-+.++|+|+. .+|++|..      .|.+.+||..+                   ...+..+
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t-------------------~d~v~ki  453 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT-------------------LDTVYKI  453 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc-------------------eeeEEEe
Confidence            99998888876533  456789999999 99999864      56899999998                   7778887


Q ss_pred             ccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .-....|..+.|+|.-. .|..++.||.++||=
T Consensus       454 ~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  454 DISTASVVRCLWHPKLN-QIFAGSGDGTAHVYY  485 (641)
T ss_pred             cCCCceEEEEeecchhh-heeeecCCCceEEEE
Confidence            77778899999999877 566777789998863

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-33  Score=244.31  Aligned_cols=245  Identities=18%  Similarity=0.255  Sum_probs=212.0

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ......|..++|+|..++++++    --.|.|++||..         -+.++..+..|.++|..++|+|.++ +++++++
T Consensus         6 EskSsRvKglsFHP~rPwILts----lHsG~IQlWDYR---------M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGD   71 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTS----LHSGVIQLWDYR---------MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGD   71 (1202)
T ss_pred             hcccccccceecCCCCCEEEEe----ecCceeeeehhh---------hhhHHhhhhccCCccceeeecCCCC-eEEecCC
Confidence            3456789999999999999996    477899999998         6788999999999999999999999 4667799


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~  218 (351)
                      |..|++|+..+......     ..+|...|..+.|++.-+.+++++.|-+|+||+..+++++..+. +|   |.|..|+|
T Consensus        72 DykIkVWnYk~rrclft-----L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFT-----LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHP  145 (1202)
T ss_pred             ccEEEEEecccceehhh-----hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCC
Confidence            99999999986433332     23688899999999999999999999999999999999998887 55   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCC----------------------------cceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLK----------------------------APIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      ... ++++++-|.+||+||+.-..                            ...+.+++|...|+-++|+|.- .++++
T Consensus       146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS  223 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS  223 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence            887 89999999999999975211                            0124567999999999999999 99999


Q ss_pred             eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |+.|..|++|.+...                 +.-.+.+..+|.+.|.++-|+|... +++|.|.|++|+|||+.+
T Consensus       224 G~DDRqVKlWrmnet-----------------KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNET-----------------KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cCCcceeeEEEeccc-----------------cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccc
Confidence            999999999999861                 1334667789999999999999877 899999999999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.7e-33  Score=240.20  Aligned_cols=257  Identities=16%  Similarity=0.226  Sum_probs=203.2

Q ss_pred             Eeee-cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc------cC---------------------C------
Q 018697           59 EGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL------YG---------------------Q------  104 (351)
Q Consensus        59 ~~~~-~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~------~~---------------------~------  104 (351)
                      +.+. +|.+.|+++.||+||++||++    |.|+.|+||.+.+.      ..                     .      
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            4455 899999999999999999985    89999999998760      00                     0      


Q ss_pred             -------CC-----------CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697          105 -------LN-----------SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus       105 -------~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                             ..           .-..++++.+.+|.+.|..+.|+.++-  |++++.|.+|++|++.....+ .++     .
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~CL-~~F-----~  407 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF--LLSSSMDKTVRLWHPGRKECL-KVF-----S  407 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCe--eEeccccccEEeecCCCccee-eEE-----e
Confidence                   00           002345667889999999999999876  888899999999999864333 333     3


Q ss_pred             cccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          167 MLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       167 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      |...|+|++|+| |++++++|+-|+.++||++...+.+.-..... |++++|.|+|+ ..+.|+.+|.+++|+.+. .+.
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~-lk~  485 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEG-LKL  485 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccC-CeE
Confidence            566999999999 57889999999999999998776554444334 99999999999 788899999999999986 333


Q ss_pred             eeEeeC--C------CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc-
Q 018697          245 IQELPG--H------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-  315 (351)
Q Consensus       245 ~~~~~~--~------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  315 (351)
                      ...+..  |      ...|+.+.|.|..+..++..+.|..|||+|.+.                   ..++..|+++.. 
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------KDLVHKFKGFRNT  546 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-------------------hhhhhhhcccccC
Confidence            333221  1      237999999998766677788999999999988                   788888887543 


Q ss_pred             -eEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          316 -SVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       316 -~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                       .-....|+.||+ +|+++++|..|++|+++.+..
T Consensus       547 ~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  547 SSQISASFSSDGK-HIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             CcceeeeEccCCC-EEEEeecCceEEEEeCCCCcc
Confidence             335678999999 899999999999999866543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=211.99  Aligned_cols=244  Identities=18%  Similarity=0.286  Sum_probs=211.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|++.+...+..+-++    ++.|-+.+|||.-         ++..++.+ .|+..|.+++|+.|..+ +++
T Consensus        53 gtfeghkgavw~~~l~~na~~aas----aaadftakvw~a~---------tgdelhsf-~hkhivk~~af~~ds~~-llt  117 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAAS----AAADFTAKVWDAV---------TGDELHSF-EHKHIVKAVAFSQDSNY-LLT  117 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhh----hcccchhhhhhhh---------hhhhhhhh-hhhheeeeEEecccchh-hhc
Confidence            678899999999999887655555    3789999999987         67888888 79999999999999986 888


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD  217 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~  217 (351)
                      ++.+..++|||++..+....    +..+|...|..+-|....+.+++++.|++||+||.+++..+.++...+ |.++.++
T Consensus       118 gg~ekllrvfdln~p~App~----E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs  193 (334)
T KOG0278|consen  118 GGQEKLLRVFDLNRPKAPPK----EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS  193 (334)
T ss_pred             cchHHHhhhhhccCCCCCch----hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence            89999999999996544333    344778899999999999999999999999999999999999998777 9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      ++|+  +++-...+.|.+||..+.+ +++.++. ...|.+...+|+. .++++|+.|..++.||..+             
T Consensus       194 ~dG~--ilTia~gssV~Fwdaksf~-~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~T-------------  255 (334)
T KOG0278|consen  194 QDGR--ILTIAYGSSVKFWDAKSFG-LLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNT-------------  255 (334)
T ss_pred             cCCC--EEEEecCceeEEecccccc-ceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccC-------------
Confidence            9997  4555666899999998744 6776653 5678999999999 9999999999999999999             


Q ss_pred             CCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          298 SPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       298 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                            ++.+..+ ++|.++|.++.|+|+|. +.++|+.||+|++|.+.+
T Consensus       256 ------geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  256 ------GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ------CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence                  7777776 89999999999999999 899999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-31  Score=224.49  Aligned_cols=245  Identities=22%  Similarity=0.362  Sum_probs=206.5

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+.+|.+.|.+++|+|+++.++++    +.++.+++|++.         ..+....+..|...+..+.|+|+++. ++++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~----~~~g~i~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~   69 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATG----SGDGTIKVWDLE---------TGELLRTLKGHTGPVRDVAASADGTY-LASG   69 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEe----ecCcEEEEEEee---------CCCcEEEEecCCcceeEEEECCCCCE-EEEE
Confidence            456899999999999998888875    679999999998         44566778889999999999999963 6677


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcC
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYD  217 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~  217 (351)
                      +.++.|++|++.+........     .|...+.++.|+|+++.+++++.++.+++||+++++....+....  +.+++|+
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence            789999999998643332222     445589999999997777777779999999999877766666222  9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      |++. ++++++.++.|++||++. .+++..+..|...+.++.|+|++ ..+++++.|+.|++||++.             
T Consensus       145 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~-------------  208 (289)
T cd00200         145 PDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST-------------  208 (289)
T ss_pred             CcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC-------------
Confidence            9987 788888899999999986 66788888899999999999999 8888888899999999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                            ++.+..+..|...+.++.|+|++. ++++++.|+.|++|++..
T Consensus       209 ------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         209 ------GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             ------CceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC
Confidence                  777778878888999999999976 788888899999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-31  Score=253.16  Aligned_cols=257  Identities=16%  Similarity=0.169  Sum_probs=202.4

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      +..|.+.|.+++|+|+++.++++    +.|+.|+||++....... .....+...+. +...+.+++|++.....+++++
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~-~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDG-RDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEECCcccccc-cccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence            45689999999999999888775    799999999976311000 00011223333 3568999999986554477778


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT  218 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~  218 (351)
                      .|++|++||+.++....     ...+|...|++++|+| ++..|++++.|+.|++||++++..+..+.... +.++.|++
T Consensus       553 ~Dg~v~lWd~~~~~~~~-----~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  627 (793)
T PLN00181        553 FEGVVQVWDVARSQLVT-----EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS  627 (793)
T ss_pred             CCCeEEEEECCCCeEEE-----EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence            89999999998643322     2236777999999997 67889999999999999999988777776333 89999965


Q ss_pred             -CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          219 -KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       219 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                       ++. ++++|+.|+.|++||++....++..+.+|...|.++.|. ++ .+|++++.|++|++||++.....         
T Consensus       628 ~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~---------  695 (793)
T PLN00181        628 ESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG---------  695 (793)
T ss_pred             CCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc---------
Confidence             565 899999999999999987555677888999999999997 56 79999999999999999752100         


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                          ....++..+.+|...+..++|+|++. +|++|+.|+.|++|+..
T Consensus       696 ----~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        696 ----INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA  738 (793)
T ss_pred             ----cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence                01356778899999999999999998 89999999999999965

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-31  Score=200.95  Aligned_cols=250  Identities=18%  Similarity=0.325  Sum_probs=200.6

Q ss_pred             eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCC
Q 018697           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR  133 (351)
Q Consensus        55 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~  133 (351)
                      .+....+.+|.+.|+.++|+|-...++++   +|.|+.|++|+...      .....+...+ .+|+..|.+++|+|.|+
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~   74 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILAS---CGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGR   74 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEe---ecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCc
Confidence            34567788999999999999973345555   48999999999872      1124444444 47999999999999999


Q ss_pred             CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC---cCceeecce
Q 018697          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG---KTNSIEHAH  210 (351)
Q Consensus       134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~  210 (351)
                      + +++++.|.++.||.-..+.-..   .....+|...|.+++|+++|.+|++++.|+.|-||.+..+.   +...++ +|
T Consensus        75 ~-La~aSFD~t~~Iw~k~~~efec---v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~H  149 (312)
T KOG0645|consen   75 Y-LASASFDATVVIWKKEDGEFEC---VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EH  149 (312)
T ss_pred             E-EEEeeccceEEEeecCCCceeE---EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cc
Confidence            3 6666899999999866432111   23345888999999999999999999999999999998554   333444 55


Q ss_pred             ---eEEEEcCCCCCcEEEEecCCCeEEEEecccC--CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                         |..+.|+|... +|++++.|.+|++|+-...  -.+++++.+|...|.+++|+|.| ..|++++.|++++||.... 
T Consensus       150 tqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~-  226 (312)
T KOG0645|consen  150 TQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT-  226 (312)
T ss_pred             cccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc-
Confidence               99999999887 9999999999999987631  24789999999999999999999 9999999999999999764 


Q ss_pred             CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                        .-    -..|+..+..+.|. ++  .|++++.|+.|++|.-..
T Consensus       227 ------------------~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  227 ------------------DL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ------------------Cc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence                              11    12467789999999 44  799999999999998653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=221.52  Aligned_cols=230  Identities=19%  Similarity=0.338  Sum_probs=195.4

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      ....|.|+.+.  +..+++    |..|.+|+|||..         ...+.+.+.+|++.|.|+.|...   ++++++.|.
T Consensus       196 ~skgVYClQYD--D~kiVS----GlrDnTikiWD~n---------~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDs  257 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVS----GLRDNTIKIWDKN---------SLECLKILTGHTGSVLCLQYDER---VIVSGSSDS  257 (499)
T ss_pred             cCCceEEEEec--chhhhc----ccccCceEEeccc---------cHHHHHhhhcCCCcEEeeeccce---EEEecCCCc
Confidence            34688898884  456666    5899999999988         77889999999999999998754   577778999


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC--ceeecce---eEEEEcCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDT  218 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~---v~~~~~~~  218 (351)
                      +|++||+++++....++     .|...|..+.|+  +.++++++.|.++.+||+.+...+  ...-.+|   |+.+.|+.
T Consensus       258 TvrvWDv~tge~l~tli-----hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLI-----HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             eEEEEeccCCchhhHHh-----hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            99999999876655444     466789999997  478999999999999999876522  1222366   89999864


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                        + ++++++.|.+|++|++.+ ...++++.+|...|-|+.+.  + +++++|+.|.+|++||+..              
T Consensus       331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~--------------  389 (499)
T KOG0281|consen  331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC--------------  389 (499)
T ss_pred             --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccc--------------
Confidence              3 799999999999999998 77899999999999999875  3 8999999999999999999              


Q ss_pred             CcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                           +.++..+.+|+.-|.++.|..  + .+++|++||+|++||+..-
T Consensus       390 -----G~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  390 -----GACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             -----cHHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecccc
Confidence                 999999999999999999975  4 6999999999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.4e-32  Score=205.61  Aligned_cols=247  Identities=15%  Similarity=0.248  Sum_probs=211.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +...+|...|.+++|+.+|..|++    |+.|+++.+|+++..       ....-...++|.+.|-.++|.|..+.++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~las----gs~dktv~v~n~e~~-------r~~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLAS----GSFDKTVSVWNLERD-------RFRKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeee----cccCCceEEEEecch-------hhhhhhcccCCCcchhhheeCCCCCcceEE
Confidence            556789999999999999999998    489999999999821       222233467899999999999998887778


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD  217 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~  217 (351)
                      ++.|.+|++||+..++....+....      .-.-+.|+|+|.+++++..|..|.+.|.++.+.....+... ++.++|+
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~  156 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN  156 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence            8889999999999876666554433      45567899999999999999999999999888777666444 8899999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      .++. +++.....|.|.|..... -+++..++.|.....||.|+|+| ++||+|+.|-.+.+||+..             
T Consensus       157 ~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E-------------  220 (313)
T KOG1407|consen  157 NSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDE-------------  220 (313)
T ss_pred             CCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhH-------------
Confidence            7776 677677779999999987 55899999999999999999999 9999999999999999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                            .-+++.+..+.-+|+.+.|+.+|+ +||++++|..|-|=+++
T Consensus       221 ------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  221 ------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE  261 (313)
T ss_pred             ------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence                  888999999999999999999999 99999999998665544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5e-33  Score=227.44  Aligned_cols=249  Identities=12%  Similarity=0.244  Sum_probs=206.9

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|+..|.++.|.|....|+..   ++.|+.|+||++..        ..++++++.+|..+|.+++|+++|.. +++
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~--------~~~~lrtf~gH~k~Vrd~~~s~~g~~-fLS  275 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYD--------DRRCLRTFKGHRKPVRDASFNNCGTS-FLS  275 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEec--------CcceehhhhcchhhhhhhhccccCCe-eee
Confidence            5678999999999999955455554   58999999999983        57899999999999999999999996 888


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      ++.|+.+++||.+++..........      .++++.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|   |..+
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i  348 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDI  348 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeee
Confidence            8999999999999987666655544      79999999999 667788999999999999999887776 44   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                      .|-++|+ .+++.++|++++||+.+. ..+++.. ..+....-++..+|.+ .+++.-+.|+.|.+|.+...-       
T Consensus       349 ~F~~~g~-rFissSDdks~riWe~~~-~v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~-------  418 (503)
T KOG0282|consen  349 TFVDEGR-RFISSSDDKSVRIWENRI-PVPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF-------  418 (503)
T ss_pred             EEccCCc-eEeeeccCccEEEEEcCC-CccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEeccccc-------
Confidence            9999999 799999999999999987 3344332 2334556788899999 999999999999999876511       


Q ss_pred             ccccCCcccccccceeecccc--ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          294 SLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                               ....-..+.+|.  +.-..+.|||||+ +|++|..||.+.+||.++
T Consensus       419 ---------r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  419 ---------RLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             ---------ccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechh
Confidence                     123344566774  3456789999999 899999999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=229.29  Aligned_cols=264  Identities=14%  Similarity=0.184  Sum_probs=221.5

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      ..+.+.+|+.....   ..+.+  -.+-+.+..|.|.+++++.+    ...|.+.+||+.         ....+.+.+.|
T Consensus       392 a~~SikiWn~~t~k---ciRTi--~~~y~l~~~Fvpgd~~Iv~G----~k~Gel~vfdla---------S~~l~Eti~AH  453 (888)
T KOG0306|consen  392 AGESIKIWNRDTLK---CIRTI--TCGYILASKFVPGDRYIVLG----TKNGELQVFDLA---------SASLVETIRAH  453 (888)
T ss_pred             CCCcEEEEEccCcc---eeEEe--ccccEEEEEecCCCceEEEe----ccCCceEEEEee---------hhhhhhhhhcc
Confidence            44666666665432   11222  12478899999999888884    799999999998         56777788899


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC----Ccc---cccccccCcccceeeeEECCCCCcEEEeecCCeE
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK----NAQ---VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (351)
                      ++.|++++.+||+.. +++++.|.+|++||..-...    ..+   +.....-.....|.+++++||+++|+++--|+++
T Consensus       454 dgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV  532 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV  532 (888)
T ss_pred             ccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence            999999999999997 88889999999999752111    111   1111111223489999999999999999999999


Q ss_pred             EEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018697          193 QFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       193 ~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  269 (351)
                      ++|-+.+-+....+. +|   |.|+..+||+. +++||+.|.+|++|-+.- +.+.+.+-+|...|.++.|-|.. .++.
T Consensus       533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FF  608 (888)
T KOG0306|consen  533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFF  608 (888)
T ss_pred             EEEEecceeeeeeec-ccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEE
Confidence            999999988777777 77   99999999998 999999999999999986 88999999999999999999988 9999


Q ss_pred             EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +++.|+.|+-||-..                   .+.++.+.+|...|++++.+|+|. ++++++.|.+|++|....
T Consensus       609 t~gKD~kvKqWDg~k-------------------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEK-------------------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EecCcceEEeechhh-------------------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence            999999999999998                   899999999999999999999999 899999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-31  Score=222.87  Aligned_cols=261  Identities=16%  Similarity=0.232  Sum_probs=216.7

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-  118 (351)
                      ....+++|+.....  +. .....+.+.|+++.|+++|..|+++    ..+|.|.|||..         ..+.+..+.+ 
T Consensus       195 lg~~vylW~~~s~~--v~-~l~~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD~~---------~~k~~~~~~~~  258 (484)
T KOG0305|consen  195 LGQSVYLWSASSGS--VT-ELCSFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWDVK---------EQKKTRTLRGS  258 (484)
T ss_pred             ecceEEEEecCCCc--eE-EeEecCCCceEEEEECCCCCEEEEe----ecCCeEEEEehh---------hccccccccCC
Confidence            34577888876654  22 2222238999999999999999985    689999999998         5677778888 


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      |...|-+++|+..   ++..++.|+.|..+|++..+....    ...+|...|..++|++++.++++|+.|+.+.|||..
T Consensus       259 h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  259 HASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             cCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            9999999999932   355668899999999997554444    245788899999999999999999999999999997


Q ss_pred             cCCcCceeecce---eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-
Q 018697          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-  272 (351)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-  272 (351)
                      ..+++..+. .|   |..++|+|....+||+|+  .|+.|++||..+ +..+..+. ....|..|.|++....++.+-+ 
T Consensus       332 ~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~  408 (484)
T KOG0305|consen  332 SPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGY  408 (484)
T ss_pred             CccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence            777777776 55   999999999888999876  689999999997 66677665 4688999999999844444433 


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .++.|.||+..+                   ...+..+.+|...|..++++|||. .+++|+.|.++++|++=+
T Consensus       409 s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  409 SENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccC
Confidence            477899999998                   888999999999999999999999 899999999999999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=7.9e-31  Score=208.46  Aligned_cols=308  Identities=20%  Similarity=0.368  Sum_probs=224.2

Q ss_pred             ceEEEeeeeeC-CCCEEEEEEeCCC---------------------CCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697           29 TSFLTGTLSLK-EENEVHLLRLSSG---------------------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus        29 ~~~~~g~~~~~-~~~~i~~~~~~~~---------------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      ..++.|++... .+|.|.++++...                     ..+........|.+.++.+.-++-++-.++++  
T Consensus        93 ~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~as--  170 (440)
T KOG0302|consen   93 AYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPHYGGINRVRVSRLGNEVLCAS--  170 (440)
T ss_pred             hhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhccccccccccccccccceeeecccCCcceeee--
Confidence            34455555443 4577777665521                     11333345678899999999988866555544  


Q ss_pred             cCCcceEEEEEcccccCCC-------CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc
Q 018697           87 TGESYGAAIWQIPELYGQL-------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV  159 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~  159 (351)
                      -+..|.|+||++.......       .....+++.++.+|...=+.++|||-....++++.--+.|++|...++  ...+
T Consensus       171 wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g--~W~v  248 (440)
T KOG0302|consen  171 WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG--SWKV  248 (440)
T ss_pred             ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC--ceee
Confidence            4788999999997543322       223567889999999999999999954432566544688999999874  3444


Q ss_pred             ccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCce-eecce---eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          160 QSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNS-IEHAH---VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~-~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      -.....+|+..|..++|+|..+. +++++.||+|+|||+|.+..... +...|   |+.+.|+..-. +|++|+.||+++
T Consensus       249 d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~  327 (440)
T KOG0302|consen  249 DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLS  327 (440)
T ss_pred             cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEE
Confidence            44556679999999999997655 56678999999999999843332 22345   99999999988 999999999999


Q ss_pred             EEecccC--CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          235 LWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       235 i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      |||+|..  ++++..++-|..+|++|.|+|.....|++++.|.+|.+||+.....++.........-.+...++++...+
T Consensus       328 iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG  407 (440)
T KOG0302|consen  328 IWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG  407 (440)
T ss_pred             EEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc
Confidence            9999964  46899999999999999999988789999999999999999875443322221111111112344544444


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                       ...+..+.|++.-+.++++.+.|| +.||.
T Consensus       408 -Qke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  408 -QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             -hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence             345889999999888999999998 45554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2e-30  Score=231.53  Aligned_cols=301  Identities=16%  Similarity=0.221  Sum_probs=232.6

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCC---------CeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG---------TELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~   82 (351)
                      +++....+-++..+|+..+|+.|.+.  .++.+.+|+..+..         -+........|.+.|+|+.|+|||++|++
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~--~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQV--LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCcc--ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence            34456668899999999999998643  34555577766422         12222456689999999999999999998


Q ss_pred             EEeecCCcceEEEEEcccc---------cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCC
Q 018697           83 TVFSTGESYGAAIWQIPEL---------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS  153 (351)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  153 (351)
                          |++|+.|.||.....         .+..+-..++.+..+.+|...|..++|+|++.. +++++.|++|.||+..+.
T Consensus        87 ----GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~-lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   87 ----GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL-LVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             ----ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE-EEEecccceEEEEccccc
Confidence                589999999998731         123344567889999999999999999999883 555589999999999976


Q ss_pred             CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------eeEEEEcCCCCCcEEE
Q 018697          154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------HVRNVDYDTKKKHLLV  225 (351)
Q Consensus       154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~  225 (351)
                      + ....+    .+|...|..+.|.|-|+++++-+.|++|++|++.+-.....+...        ++..+.|+|||. +|+
T Consensus       162 ~-~~~vl----~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~la  235 (942)
T KOG0973|consen  162 E-LLKVL----RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLA  235 (942)
T ss_pred             e-eeeee----ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eec
Confidence            3 22222    367789999999999999999999999999997764444444311        189999999999 566


Q ss_pred             Eec-C---CCeEEEEecccCCcceeEeeCCCCceeEEEecCC--------C----CC----eEEEeeCCCeEEEEEcCCC
Q 018697          226 TAA-D---ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE--------Y----DG----FILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       226 ~~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~----~~----~l~s~~~dg~i~iwd~~~~  285 (351)
                      +.. -   -.++.|.+..+ -+.-..+-+|..++.+++|+|.        |    ..    .+|+|+.|++|.||.... 
T Consensus       236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-  313 (942)
T ss_pred             chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-
Confidence            543 2   23688888765 4456778899999999999982        1    11    688999999999999977 


Q ss_pred             CCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                        .+++.... -....|.+++|+|||- .|..++.||+|.+.++++
T Consensus       314 ------------------~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  314 ------------------PRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ------------------CCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcch
Confidence                              55554442 3456899999999998 899999999999998864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.1e-32  Score=213.72  Aligned_cols=249  Identities=18%  Similarity=0.246  Sum_probs=199.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|.+++=+|.....+++   |+.||.|+|||+.         +..+..+++.|.+.|..+++.. +.  +++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aS---Gs~DG~VkiWnls---------qR~~~~~f~AH~G~V~Gi~v~~-~~--~~t  124 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVAS---GSCDGEVKIWNLS---------QRECIRTFKAHEGLVRGICVTQ-TS--FFT  124 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhc---cccCceEEEEehh---------hhhhhheeecccCceeeEEecc-cc--eEE
Confidence            4568999999999999977444443   6899999999999         7788999999999999999988 33  778


Q ss_pred             EecCCcEEEEEcCCCCCCcccc---------------------------cc-------cccCcccceeeeEECCCCCcEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQ---------------------------SK-------QSSGMLHYLSGGAWDPHDVNAV  184 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~---------------------------~~-------~~~~~~~~v~~~~~~~~~~~l~  184 (351)
                      +++|.+|+.|.++.. ....+.                           ..       ...--...+.++.|+|....++
T Consensus       125 vgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             ecCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            899999999985531 000000                           00       0000023567788888776655


Q ss_pred             E-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018697          185 A-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (351)
Q Consensus       185 ~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  262 (351)
                      + ++.|+.|.+||++++.++..+.... .+.++|+|.+ +.+++|++|..++.||+|....++....+|.+.|.++.|+|
T Consensus       204 as~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            5 4589999999999999988877555 8999999955 47999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      .| .-+++|+.|.+|+||..+.                   +.....+. ..-..|.++.||.|.+ ++++|++|+.|++
T Consensus       283 tG-~EfvsgsyDksIRIf~~~~-------------------~~SRdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRl  341 (433)
T KOG0268|consen  283 TG-QEFVSGSYDKSIRIFPVNH-------------------GHSRDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRL  341 (433)
T ss_pred             Cc-chhccccccceEEEeecCC-------------------CcchhhhhHhhhheeeEEEEecccc-EEEecCCCcceee
Confidence            99 9999999999999999987                   32222221 1234699999999998 8999999999999


Q ss_pred             eecC
Q 018697          342 ESVK  345 (351)
Q Consensus       342 w~~~  345 (351)
                      |...
T Consensus       342 Wka~  345 (433)
T KOG0268|consen  342 WKAK  345 (433)
T ss_pred             eecc
Confidence            9864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=1.1e-30  Score=202.91  Aligned_cols=282  Identities=18%  Similarity=0.190  Sum_probs=212.2

Q ss_pred             CCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC---------CCCCCcceeeeeeecccc
Q 018697           51 SGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG---------QLNSPQLERIAALDAHVG  121 (351)
Q Consensus        51 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~---------~~~~~~~~~~~~~~~h~~  121 (351)
                      ++........+..|...+.+.+|+|||..+++    |+.|..|+|.|++....         .........++++..|.+
T Consensus        98 ~e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d  173 (430)
T KOG0640|consen   98 PEPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD  173 (430)
T ss_pred             CCCcccceEEEeecccceeeeeeCCCCcEEEc----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC
Confidence            33444555678899999999999999977766    68999999999983211         011112256788889999


Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      +|+++.|+|... ++++++.|++|++||+.+......... .  ....+|.+++|+|.|.+|++|.....+++||+++-+
T Consensus       174 evn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  174 EVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             cccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHH-h--hccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            999999999988 466668999999999985322111111 1  123489999999999999999999999999999988


Q ss_pred             cCceeec--ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCC-CceeEEEecCCCCCeEEEeeCC
Q 018697          202 KTNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHT-HWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       202 ~~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      +...-.+  +|   |+++.+++.++ +.++++.||.|++||--. .+++.++. .|. ..|.+..|..++ +|+++.+.|
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~D  326 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKD  326 (430)
T ss_pred             EeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCC-eEEeecCCc
Confidence            7654432  23   99999999998 999999999999999776 66777775 465 568999999999 999999999


Q ss_pred             CeEEEEEcCCCCCCCCCC----------------c-------------ccccCCcccccccceee-ccccceEEEEEeCC
Q 018697          275 STVNLWLVSTSNHDELPS----------------E-------------SLVESPNQRANSLLNSY-SDYEDSVYGLAWSS  324 (351)
Q Consensus       275 g~i~iwd~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  324 (351)
                      ..+++|.+.++..-..-.                +             ....+|+......+..+ .+|.+.++.+.-+|
T Consensus       327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP  406 (430)
T ss_pred             ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence            999999998763211100                0             00122222222222222 37999999999999


Q ss_pred             CCCceEEEeeeCCeEEEeec
Q 018697          325 REPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~  344 (351)
                      .++ .+.+|+.|-.+|+|-=
T Consensus       407 ~~p-~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  407 VEP-AFMTCSDDFRARFWYR  425 (430)
T ss_pred             CCC-ceeeecccceeeeeee
Confidence            999 8999999999999963

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=7.6e-30  Score=193.49  Aligned_cols=280  Identities=17%  Similarity=0.226  Sum_probs=228.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.++.++.+++.|+    .+..+.+|.+... .........+|.+.|-.++|.|....+++++   +.|.+|++
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs----~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~ata---s~dk~ir~   91 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGS----FDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATA---SGDKTIRI   91 (313)
T ss_pred             hhcceEEEEcccCceeeecc----cCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEe---cCCceEEE
Confidence            34566677788899999886    4678888998887 4444456778999999999999888777764   78999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||+.         ..++........+.+ -+.|+|+|.+ ++++..|..|...|.++..........      ..+..++
T Consensus        92 wd~r---------~~k~~~~i~~~~eni-~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~------~e~ne~~  154 (313)
T KOG1407|consen   92 WDIR---------SGKCTARIETKGENI-NITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFK------FEVNEIS  154 (313)
T ss_pred             EEec---------cCcEEEEeeccCcce-EEEEcCCCCE-EEEecCcccEEEEEecccceeehhccc------ceeeeee
Confidence            9998         678877775544444 4789999996 777788899999999864433332222      2788899


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      |+-++..++.....|+|.|.....-+++..++ +|   ..|++|+|+|+ +|++|+.|..+.+||+.. --+++.+..+.
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRld  231 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-LICERCISRLD  231 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCc-eEeeccccceeeccChhH-hhhheeecccc
Confidence            99777777777788999999999888888888 66   88999999999 799999999999999987 55788898999


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      -+|..+.|+.+| ++||++++|..|-|=++++                   +..+..++ +.++-..++|+|... +||-
T Consensus       232 wpVRTlSFS~dg-~~lASaSEDh~IDIA~vet-------------------Gd~~~eI~-~~~~t~tVAWHPk~~-LLAy  289 (313)
T KOG1407|consen  232 WPVRTLSFSHDG-RMLASASEDHFIDIAEVET-------------------GDRVWEIP-CEGPTFTVAWHPKRP-LLAY  289 (313)
T ss_pred             CceEEEEeccCc-ceeeccCccceEEeEeccc-------------------CCeEEEee-ccCCceeEEecCCCc-eeeE
Confidence            999999999999 9999999999999999998                   88887774 577889999999987 7877


Q ss_pred             eeeC---------CeEEEeecC
Q 018697          333 LSYD---------GRVVVESVK  345 (351)
Q Consensus       333 ~~~d---------g~v~vw~~~  345 (351)
                      ++.|         |.|+++-++
T Consensus       290 A~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  290 ACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EecCCCCccccccceeEEecCC
Confidence            6644         577877654

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=1.8e-29  Score=222.60  Aligned_cols=229  Identities=15%  Similarity=0.164  Sum_probs=174.4

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc---cccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV---QSKQ  163 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~---~~~~  163 (351)
                      |+.++.|++|+..         ....+..+.+|.+.|.+++|+|+...++++++.|++|+|||+.+.......   ....
T Consensus        50 GG~~gvI~L~~~~---------r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~  120 (568)
T PTZ00420         50 GGLIGAIRLENQM---------RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI  120 (568)
T ss_pred             CCceeEEEeeecC---------CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence            5678899999987         345678889999999999999985445777799999999999864321110   1112


Q ss_pred             ccCcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          164 SSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      ..+|...|.+++|+|++..+ ++++.|+.|++||+++++....+.... |.+++|+|+|. +|++++.|+.|+|||+++ 
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs-  198 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK-  198 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-
Confidence            34678899999999998765 578899999999999988766665334 99999999998 889999999999999998 


Q ss_pred             CcceeEeeCCCCceeEE-----EecCCCCCeEEEeeCCC----eEEEEEcCCCCCCCCCCcccccCCcccccccceeec-
Q 018697          242 KAPIQELPGHTHWTWAV-----CCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~-----~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  311 (351)
                      ++.+.++.+|.+.+...     .|++++ .+|++++.|+    +|+|||++..                  ..++.... 
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~------------------~~pl~~~~l  259 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT------------------TSALVTMSI  259 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC------------------CCceEEEEe
Confidence            66788899998765432     345888 7888877664    7999999951                  34454443 


Q ss_pred             -cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          312 -DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       312 -~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                       .+...+...-..+++. ++++|+.|+.|++|++..
T Consensus       260 d~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        260 DNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             cCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccC
Confidence             2333333333344566 889999999999999853

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=8.3e-29  Score=184.43  Aligned_cols=292  Identities=16%  Similarity=0.223  Sum_probs=222.0

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC------------CCeEEEEeeecCCcceeeeeeCCCCCceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG------------GTELICEGLFSHPNEIWDLSSCPFDQRIFS   82 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~   82 (351)
                      +.+.+.++.++|.+...++|+.    ...+++..+...            ...+..++-..|.+.|.|.+|+|.|+.|++
T Consensus        31 dsqairav~fhp~g~lyavgsn----skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSN----SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             chhheeeEEecCCCceEEeccC----CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            4566778889999999999864    244555544421            123455667789999999999999988877


Q ss_pred             EEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC---CCCcEEEE--ecCCcEEEEEcCCCCCCc
Q 018697           83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS---GRHDKLVS--IDEENIFLWSLDCSNKNA  157 (351)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~--~~d~~v~iwd~~~~~~~~  157 (351)
                          |+.|.+|++..+..+...    ....-..+.-|.+.|..++|..+   +.. ++++  ..|..|++-|...+....
T Consensus       107 ----gsndk~ik~l~fn~dt~~----~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen  107 ----GSNDKTIKVLPFNADTCN----ATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             ----cCCCceEEEEeccccccc----ccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence                589999999877632111    11223456779999999999653   333 4444  346667776766543332


Q ss_pred             ccccccccCcccceeee-EECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------e-eEEEEcCCCCCcEEEEe
Q 018697          158 QVQSKQSSGMLHYLSGG-AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H-VRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       158 ~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~l~~~  227 (351)
                           ...+|+.-|.++ .|  ++-.+++|+.|.+|++||++-..++.++...        . |.+++..|.|+ +|++|
T Consensus       178 -----a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg  249 (350)
T KOG0641|consen  178 -----ALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG  249 (350)
T ss_pred             -----eecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence                 234566666665 45  4678889999999999999988877766522        1 99999999999 99999


Q ss_pred             cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc
Q 018697          228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (351)
                      ..|....+||+|- +++++.+..|...|.++.|+|.. .|+++++.|..|++-|++-.-               ...-++
T Consensus       250 ~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdl---------------a~el~~  312 (350)
T KOG0641|consen  250 HADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDL---------------AHELPI  312 (350)
T ss_pred             cCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccch---------------hhcCce
Confidence            9999999999996 88999999999999999999998 999999999999999997410               012344


Q ss_pred             eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .....|...+..+.|+|..- -+++.+.|.++.+|-++
T Consensus       313 ~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  313 MVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            55667888899999999876 68899999999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=6.9e-32  Score=216.72  Aligned_cols=259  Identities=17%  Similarity=0.257  Sum_probs=213.4

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      +.+..|.+|+...++. -....+.+..+.|+++.|.+++..++++    +.|+.+++|++.         ..+...++.+
T Consensus       194 g~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~~~iAa----s~d~~~r~Wnvd---------~~r~~~TLsG  259 (459)
T KOG0288|consen  194 GSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNKHVIAA----SNDKNLRLWNVD---------SLRLRHTLSG  259 (459)
T ss_pred             chhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCceEEee----cCCCceeeeecc---------chhhhhhhcc
Confidence            4677788888777652 2346677888999999999999999986    799999999998         7889999999


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      |++.|+++.|...... ++.++.|.+|++||+........++...      .+.++..+  ...++++-.|++|++||++
T Consensus       260 HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             cccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEecc
Confidence            9999999999888775 6777899999999999755444444433      56666665  3557777889999999999


Q ss_pred             cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC----CCceeEEEecCCCCCeEEEeeC
Q 018697          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      +..+....+.+. |.++..++++. -+.+.+.|.++.++|++. ....+.+...    ....+.+.|||++ .|+++|+.
T Consensus       331 s~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~  407 (459)
T KOG0288|consen  331 SADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSA  407 (459)
T ss_pred             CCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCC-ceeeeccC
Confidence            999988888555 99999999998 566679999999999997 5555555432    2347899999999 99999999


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ||.|+||++.+                   +++...+.....  .|++++|+|.|. .+++++.++.+.+|.
T Consensus       408 dgsv~iW~v~t-------------------gKlE~~l~~s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  408 DGSVYIWSVFT-------------------GKLEKVLSLSTSNAAITSLSWNPSGS-GLLSADKQKAVTLWT  459 (459)
T ss_pred             CCcEEEEEccC-------------------ceEEEEeccCCCCcceEEEEEcCCCc-hhhcccCCcceEecC
Confidence            99999999998                   777766655433  599999999999 788999999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-29  Score=190.00  Aligned_cols=278  Identities=15%  Similarity=0.216  Sum_probs=216.6

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      ++..+..+.++.-.+.    .+.+..+++|+   .....+.+...+|..+|.+++.+.|+..+++    +|.|..+.+||
T Consensus        19 aV~avryN~dGnY~lt----cGsdrtvrLWN---p~rg~liktYsghG~EVlD~~~s~Dnskf~s----~GgDk~v~vwD   87 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLT----CGSDRTVRLWN---PLRGALIKTYSGHGHEVLDAALSSDNSKFAS----CGGDKAVQVWD   87 (307)
T ss_pred             ceEEEEEccCCCEEEE----cCCCceEEeec---ccccceeeeecCCCceeeecccccccccccc----CCCCceEEEEE
Confidence            3444444554433322    23456665555   3344567889999999999999999999888    48999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC-CcccccccccCcccceeeeEE
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      +.         +++.++.+++|.+.|+.++|+.+.. ++++++.|.++++||.+.... +.+++.    .....|.++..
T Consensus        88 V~---------TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild----ea~D~V~Si~v  153 (307)
T KOG0316|consen   88 VN---------TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD----EAKDGVSSIDV  153 (307)
T ss_pred             cc---------cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh----hhcCceeEEEe
Confidence            99         8899999999999999999999888 355558899999999985432 222222    12347888887


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (351)
                      +  +..|++|+.||+++.||++.|+...... ++ |++++|+++++ ..+.++-|+++++.|-.+ ++.++.+++|...-
T Consensus       154 ~--~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~e  228 (307)
T KOG0316|consen  154 A--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNME  228 (307)
T ss_pred             c--ccEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccce
Confidence            5  4679999999999999999998777666 56 99999999998 777799999999999987 88899999998765


Q ss_pred             eEE--EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce-EEEEEeCCCCCceEEE
Q 018697          256 WAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFAS  332 (351)
Q Consensus       256 ~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s  332 (351)
                      ..+  +++... ..+++|++||.|.+||+..                   ...+..+..+... |.+++++|.-. -|.+
T Consensus       229 ykldc~l~qsd-thV~sgSEDG~Vy~wdLvd-------------------~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~  287 (307)
T KOG0316|consen  229 YKLDCCLNQSD-THVFSGSEDGKVYFWDLVD-------------------ETQISKLSVVSTVIVTDLSCHPTMD-DFIT  287 (307)
T ss_pred             eeeeeeecccc-eeEEeccCCceEEEEEecc-------------------ceeeeeeccCCceeEEeeecccCcc-ceeE
Confidence            544  455555 8999999999999999998                   7888888888777 89999999877 3444


Q ss_pred             eeeCCeEEEeecCcc
Q 018697          333 LSYDGRVVVESVKPF  347 (351)
Q Consensus       333 ~~~dg~v~vw~~~~~  347 (351)
                      +. ++.+.+|.-+.+
T Consensus       288 A~-~~~~~~~~~~~y  301 (307)
T KOG0316|consen  288 AT-GHGDLFWYQENY  301 (307)
T ss_pred             ec-CCceeceeehhh
Confidence            44 345667755443

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=3.2e-29  Score=221.06  Aligned_cols=253  Identities=15%  Similarity=0.174  Sum_probs=176.3

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCC-CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      +.+.++.++..........+.+|.+.|.+++|+|+. ..|++    ++.|++|+||++....... .....++..+.+|.
T Consensus        51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS----gS~DgtIrIWDi~t~~~~~-~~i~~p~~~L~gH~  125 (568)
T PTZ00420         51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS----GSEDLTIRVWEIPHNDESV-KEIKDPQCILKGHK  125 (568)
T ss_pred             CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE----EeCCCeEEEEECCCCCccc-cccccceEEeecCC
Confidence            344445555433333456778999999999999974 45555    4799999999997311000 00013455678999


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                      ..|.+++|+|++..++++++.|++|+|||+.++.....+.      +...|.+++|+|+|..|++++.|+.|++||++++
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            9999999999998645566889999999999754332221      2347999999999999999999999999999999


Q ss_pred             CcCceeecce--------eEEEEcCCCCCcEEEEecCC----CeEEEEecccCCcceeEeeCCC--CceeEEEecCCCCC
Q 018697          201 GKTNSIEHAH--------VRNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGHT--HWTWAVCCNPEYDG  266 (351)
Q Consensus       201 ~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~  266 (351)
                      +.+..+. +|        +....|++++. ++++++.|    +.|+|||++....++..+..+.  +.+...-..+++ .
T Consensus       200 ~~i~tl~-gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~  276 (568)
T PTZ00420        200 EIASSFH-IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-L  276 (568)
T ss_pred             cEEEEEe-cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-C
Confidence            8877665 34        22334568887 56665555    4799999997666776654332  333333334456 8


Q ss_pred             eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                      ++++|+.|+.|++|++....                 ...+..+. +..++.+++|.|..
T Consensus       277 l~lsGkGD~tIr~~e~~~~~-----------------~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGS-----------------IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEECCCeEEEEEccCCc-----------------EEeecccc-cCCCccceEEcccc
Confidence            99999999999999997610                 11222222 45667788888853

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.3e-31  Score=205.54  Aligned_cols=276  Identities=13%  Similarity=0.217  Sum_probs=237.0

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-----eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-----ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ..++|+++.++.|+    -++-|.+|++-...-     ......+.-+..+|.|+.|+.|...|++    |+.||.|++|
T Consensus       219 A~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----GsqDGkIKvW  290 (508)
T KOG0275|consen  219 ARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----GSQDGKIKVW  290 (508)
T ss_pred             eeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----cCcCCcEEEE
Confidence            44788999888876    478899998875421     2223456678899999999999999888    5899999999


Q ss_pred             EcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           97 QIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      .+.         ++.+++.+. .|+..|+|+.|+.|+.. +++++.|.++++.-+..++....     ..+|.+.|+...
T Consensus       291 ri~---------tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE-----frGHsSyvn~a~  355 (508)
T KOG0275|consen  291 RIE---------TGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE-----FRGHSSYVNEAT  355 (508)
T ss_pred             EEe---------cchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH-----hcCccccccceE
Confidence            999         788888886 89999999999999996 77788999999999997654433     347888999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-  250 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  250 (351)
                      |.++|.++++++.||+|++|+..+.+++.++....    |+++-.-|.++.-++++....+|++.++.  ++.++.+.. 
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSG  433 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSG  433 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeeccC
Confidence            99999999999999999999999999999988554    88888888887788889999999999987  677888763 


Q ss_pred             --CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc
Q 018697          251 --HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       251 --~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (351)
                        ..+...+.+.+|.| .++++.+.|+.++.|...+                   +.+-.++..|+..|.+++-+|... 
T Consensus       434 kREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s-------------------G~LE~tl~VhEkdvIGl~HHPHqN-  492 (508)
T KOG0275|consen  434 KREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS-------------------GKLERTLPVHEKDVIGLTHHPHQN-  492 (508)
T ss_pred             CccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec-------------------CceeeeeecccccccccccCcccc-
Confidence              22445667789999 9999999999999999998                   899999999999999999999887 


Q ss_pred             eEEEeeeCCeEEEee
Q 018697          329 IFASLSYDGRVVVES  343 (351)
Q Consensus       329 ~l~s~~~dg~v~vw~  343 (351)
                      ++|+-+.||.+++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            899999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4e-29  Score=214.84  Aligned_cols=264  Identities=18%  Similarity=0.277  Sum_probs=217.8

Q ss_pred             CCCEEEEEEeCCCCC------eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee
Q 018697           40 EENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI  113 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  113 (351)
                      .+|.+..+.+....+      ......+.+|...|.++++|.+...+++     +..+.+++|+..         +.+++
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-----ga~~SikiWn~~---------t~kci  407 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-----GAGESIKIWNRD---------TLKCI  407 (888)
T ss_pred             ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-----cCCCcEEEEEcc---------Cccee
Confidence            456666666665222      1223457799999999999998766655     466799999988         78888


Q ss_pred             eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEE
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ  193 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  193 (351)
                      +++..  +-+.+..|.|.+++ ++.+...|.+.+||+..........     .|...+++++.+||+..+++++.|.+|+
T Consensus       408 RTi~~--~y~l~~~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~-----AHdgaIWsi~~~pD~~g~vT~saDktVk  479 (888)
T KOG0306|consen  408 RTITC--GYILASKFVPGDRY-IVLGTKNGELQVFDLASASLVETIR-----AHDGAIWSISLSPDNKGFVTGSADKTVK  479 (888)
T ss_pred             EEecc--ccEEEEEecCCCce-EEEeccCCceEEEEeehhhhhhhhh-----ccccceeeeeecCCCCceEEecCCcEEE
Confidence            88854  38899999999885 7778889999999999644333322     5677999999999999999999999999


Q ss_pred             EEEccc-----CCcC--------ceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE
Q 018697          194 FWDLRS-----MGKT--------NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (351)
Q Consensus       194 iwd~~~-----~~~~--------~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  259 (351)
                      +||..-     +...        .+++... |.|+++|||++ +++++--|.++++|-+.+.+ ....+.+|.-||.++.
T Consensus       480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smD  557 (888)
T KOG0306|consen  480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMD  557 (888)
T ss_pred             EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEe
Confidence            999752     1111        2222222 99999999999 89999999999999999844 6777889999999999


Q ss_pred             ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018697          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (351)
Q Consensus       260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  339 (351)
                      .+||+ .+++||+.|..|++|-+..                   +.+..++-+|.+.|.++.|.|... ++.++|.|+.|
T Consensus       558 IS~DS-klivTgSADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv  616 (888)
T KOG0306|consen  558 ISPDS-KLIVTGSADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV  616 (888)
T ss_pred             ccCCc-CeEEeccCCCceEEecccc-------------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence            99999 9999999999999999999                   999999999999999999999776 89999999999


Q ss_pred             EEeecCccc
Q 018697          340 VVESVKPFL  348 (351)
Q Consensus       340 ~vw~~~~~~  348 (351)
                      +-||-.++.
T Consensus       617 KqWDg~kFe  625 (888)
T KOG0306|consen  617 KQWDGEKFE  625 (888)
T ss_pred             Eeechhhhh
Confidence            999987654

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.2e-29  Score=222.54  Aligned_cols=234  Identities=15%  Similarity=0.215  Sum_probs=177.3

Q ss_pred             eeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           60 GLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      .+.+|.+.|.+++|+| ++..|+++    +.|++|++|++.....  ......++..+.+|...|.+++|+|++..++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSg----S~DgtIkIWdi~~~~~--~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTA----SEDGTIMGWGIPEEGL--TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEE----eCCCEEEEEecCCCcc--ccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence            4678999999999999 66666664    7999999999973110  001124567889999999999999987655777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNV  214 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~  214 (351)
                      ++.|++|+|||+.++....     ...+|...|.+++|+|++..|++++.|+.|++||+++++.+..+. .|    ...+
T Consensus       144 gs~DgtVrIWDl~tg~~~~-----~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~  217 (493)
T PTZ00421        144 AGADMVVNVWDVERGKAVE-----VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRC  217 (493)
T ss_pred             EeCCCEEEEEECCCCeEEE-----EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEE
Confidence            7899999999998754322     223566789999999999999999999999999999988776665 33    5577


Q ss_pred             EcCCCCCcEEEEe---cCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEee-CCCeEEEEEcCCCCCCC
Q 018697          215 DYDTKKKHLLVTA---ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       215 ~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~  289 (351)
                      .|.+++..++.+|   +.|+.|++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+..     
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~-----  291 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMN-----  291 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeC-----
Confidence            8898887444444   3579999999998666666555333 456667789999 7888777 599999999997     


Q ss_pred             CCCcccccCCcccccccceeecc-ccceEEEEEeCCC
Q 018697          290 LPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR  325 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  325 (351)
                                    +.++..... +..++.+++|.|.
T Consensus       292 --------------~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        292 --------------ERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             --------------CceEEEeeccCCCCCcceEeccc
Confidence                          555544432 3456777888874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-30  Score=210.55  Aligned_cols=276  Identities=16%  Similarity=0.255  Sum_probs=220.4

Q ss_pred             eEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           17 RCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        17 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ..++.+.++|.. +-|++..     .-.+.++.....   ...+.+......|.++.|..||+.|++    |+..|.|+|
T Consensus        27 ~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~v   94 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKV   94 (487)
T ss_pred             CcceeEecCCCCCCceEEec-----ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEc----cCCcCcEEE
Confidence            456666666643 4455532     223444333221   122445567889999999999988777    589999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      +|+.         +...++.+.+|+.+|..+.|+|.+..+++.+++|+.+++||+.+..    + .....+|+..|.+.+
T Consensus        95 fD~k---------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   95 FDMK---------SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGD  160 (487)
T ss_pred             eccc---------cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----E-EEEecCCcceeEeec
Confidence            9966         4566788999999999999999998766667889999999999643    2 334568899999999


Q ss_pred             ECCCCC-cEEEeecCCeEEEEEcccC-CcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018697          176 WDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       176 ~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      |+|... .+++|+.||.|++||++.. ..+..+.+++ |..+.+-|.|. ++++++. ..+++||+-..++.+..+..|.
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~  238 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHN  238 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence            999766 5678899999999999987 6677777777 99999999998 7777665 5899999997677777777799


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      ..|+|+++..++ ..|++++-|+.+++||+.+                   .+.+..+. ..++|.+++.+|+++ .++.
T Consensus       239 KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~-------------------~Kvv~s~~-~~~pvLsiavs~dd~-t~vi  296 (487)
T KOG0310|consen  239 KTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN-------------------YKVVHSWK-YPGPVLSIAVSPDDQ-TVVI  296 (487)
T ss_pred             ceEEEEEeecCC-ceEeecccccceEEEEccc-------------------eEEEEeee-cccceeeEEecCCCc-eEEE
Confidence            999999999999 9999999999999999887                   78887775 467899999999988 7889


Q ss_pred             eeeCCeEEEe
Q 018697          333 LSYDGRVVVE  342 (351)
Q Consensus       333 ~~~dg~v~vw  342 (351)
                      |-.+|.+.+=
T Consensus       297 GmsnGlv~~r  306 (487)
T KOG0310|consen  297 GMSNGLVSIR  306 (487)
T ss_pred             ecccceeeee
Confidence            9889987665

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=5.2e-30  Score=203.93  Aligned_cols=248  Identities=17%  Similarity=0.300  Sum_probs=202.3

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC--CCcEEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG--RHDKLV  138 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~  138 (351)
                      -+.|++.|.++...  .+.++++    +.||.+++|+..          ++...++.+|.++|.+++|.-.+  ...+++
T Consensus       101 ~~~hdDWVSsv~~~--~~~Iltg----sYDg~~riWd~~----------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGA--SKWILTG----SYDGTSRIWDLK----------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             cccchhhhhhhccc--CceEEEe----ecCCeeEEEecC----------CceEEEEecCCcceeeeEEEecCCccceEEE
Confidence            45689999998887  6788885    699999999986          68888999999999988885433  224677


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC------------------
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM------------------  200 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------------  200 (351)
                      ++.|.++++|.++.+......... ..||...|.+++..+++..+++++.|..|.+|+..+.                  
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~  243 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR  243 (423)
T ss_pred             ecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence            799999999999876554443332 2389999999999999999999999999999993211                  


Q ss_pred             -------CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          201 -------GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       201 -------~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                             .++..+. +|   |.++.|++.+  .+++++.|.+|+.||+.. +....++. ....++++..+|.. .+|++
T Consensus       244 ~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDlet-g~~~~~~~-~~ksl~~i~~~~~~-~Ll~~  317 (423)
T KOG0313|consen  244 EKEGGTRTPLVTLE-GHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLET-GGLKSTLT-TNKSLNCISYSPLS-KLLAS  317 (423)
T ss_pred             hhcccccCceEEec-ccccceeeEEEcCCC--ceEeecccceEEEEEeec-ccceeeee-cCcceeEeeccccc-ceeee
Confidence                   1122222 55   9999999844  799999999999999998 55666665 36789999999988 99999


Q ss_pred             eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |+.|..|++||.+.+..                .-..+++.+|.+.|.++.|+|...++|++++.|+++++||++.-
T Consensus       318 gssdr~irl~DPR~~~g----------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  318 GSSDRHIRLWDPRTGDG----------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             cCCCCceeecCCCCCCC----------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            99999999999998321                34566788999999999999999999999999999999999853

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7e-29  Score=217.84  Aligned_cols=253  Identities=12%  Similarity=0.143  Sum_probs=179.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC-CCCCcce---eeeeeeccccceeEEEecC-CCCCcEEEEe
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-LNSPQLE---RIAALDAHVGKINCVLWWS-SGRHDKLVSI  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~---~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~  140 (351)
                      ..|.....++++..++++    +.+.....|+......- .....++   ....+.+|.+.|++++|+| ++. ++++++
T Consensus        21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS   95 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTAS   95 (493)
T ss_pred             eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEe
Confidence            344555556665556554    45555666664310000 0000111   1124679999999999999 555 477779


Q ss_pred             cCCcEEEEEcCCCCCCcc--cccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          141 DEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      .|++|++||+.+......  .......+|...|.+++|+|++ +.|++++.|+.|++||+++++....+. .|   |.++
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sl  174 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSL  174 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEE
Confidence            999999999986432111  1112345788899999999986 578899999999999999988777665 34   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc-eeEEEecCCCCCeEEEee----CCCeEEEEEcCCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~  289 (351)
                      +|+|++. +|++++.|+.|++||+++ ++.+..+.+|... +..+.|.+++ ..+++++    .|+.|++||++..    
T Consensus       175 a~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~----  247 (493)
T PTZ00421        175 EWNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKM----  247 (493)
T ss_pred             EEECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCC----
Confidence            9999998 899999999999999998 6678888888765 4567899988 5666543    4789999999861    


Q ss_pred             CCCcccccCCcccccccceeeccc-cceEEEEEeCCCCCceEEEee-eCCeEEEeecCc
Q 018697          290 LPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSREPWIFASLS-YDGRVVVESVKP  346 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~  346 (351)
                                    ..++.....+ ...+....|++++. +|++++ .|+.|++|++.+
T Consensus       248 --------------~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        248 --------------ASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             --------------CCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeC
Confidence                          2333333322 33456678999998 677666 599999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.7e-29  Score=192.64  Aligned_cols=244  Identities=15%  Similarity=0.174  Sum_probs=204.0

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--  140 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--  140 (351)
                      .-.+.|+++.|+++|..++++    +.|.+++|||..         .++.+.++..++-.|..++|...... ++.++  
T Consensus        12 ~~~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sStk   77 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITS----SEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSSTK   77 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEe----cCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEccCC
Confidence            356899999999999999885    688899999998         67888888888888999999877775 45443  


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKK  220 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~  220 (351)
                      .|.+|+..++.+.+. .    ....||...|.+++.+|-+..+++++.|++|++||++..++...+....-..++|+|+|
T Consensus        78 ~d~tIryLsl~dNky-l----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~G  152 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKY-L----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEG  152 (311)
T ss_pred             CCCceEEEEeecCce-E----EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCC
Confidence            489999999986432 2    23458899999999999999999999999999999998888777775556678999999


Q ss_pred             CcEEEEecCCCeEEEEecccC-CcceeEeeCC---CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          221 KHLLVTAADESGIHLWDLRML-KAPIQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      - ++|++.....|++||+|.. +.|..++...   ....+.|.|+|+| ++|+.+...+.+++.|.-.            
T Consensus       153 L-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~------------  218 (311)
T KOG1446|consen  153 L-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD------------  218 (311)
T ss_pred             c-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC------------
Confidence            7 7888888779999999986 4466666533   5678999999999 8999999999999999998            


Q ss_pred             cCCcccccccceeeccccceE---EEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          297 ESPNQRANSLLNSYSDYEDSV---YGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                             +....++..+...-   .+..|+||++ ++.+|+.||+|.+|++++.
T Consensus       219 -------G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  219 -------GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             -------CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCC
Confidence                   88888887665432   5788999999 8999999999999999753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.9e-29  Score=192.52  Aligned_cols=268  Identities=15%  Similarity=0.203  Sum_probs=211.6

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCC------eEE---EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGT------ELI---CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~------~~~---~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      .++++|++    +..|..+.+.+...      ...   .-.+..|.+.|++++.+  ++++++    |+.|-+|+|||+.
T Consensus         2 m~iIvGtY----E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aS----GssDetI~IYDm~   71 (362)
T KOG0294|consen    2 MEIIVGTY----EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVAS----GSSDETIHIYDMR   71 (362)
T ss_pred             eeEEEeee----eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEec----cCCCCcEEEEecc
Confidence            36788875    56677777776541      111   12345788999999986  677777    5899999999998


Q ss_pred             cccCCCCCCcceeeeeeeccccceeEEEecCCCC--CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR--HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                               ....+..+-.|.+.|+++.|.++-.  + +++++.||.|.+|+...-     .......+|...|+.++.+
T Consensus        72 ---------k~~qlg~ll~HagsitaL~F~~~~S~sh-LlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiH  136 (362)
T KOG0294|consen   72 ---------KRKQLGILLSHAGSITALKFYPPLSKSH-LLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIH  136 (362)
T ss_pred             ---------chhhhcceeccccceEEEEecCCcchhh-eeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEec
Confidence                     5667777889999999999998763  4 888899999999999842     2233445677789999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (351)
                      |.++.-++.+.|+.+++|++-.++.-......+ ...+.|+|.|. .++.+..+ .|-+|.+.. ......+. ....+.
T Consensus       137 PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~-A~v~~~i~-~~~r~l  212 (362)
T KOG0294|consen  137 PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDN-ASVFREIE-NPKRIL  212 (362)
T ss_pred             CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEEecc-EEEEEeccc-HhHhhhhh-ccccce
Confidence            999999999999999999999998877777666 77799999999 45555554 688999886 43444443 234567


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe--CCCCCceEEEee
Q 018697          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW--SSREPWIFASLS  334 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~  334 (351)
                      ++.|...  .+|++|+.|+.|++||...                   ..+...+.+|...|-++.+  .|.+. +|++++
T Consensus       213 ~~~~l~~--~~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaS  270 (362)
T KOG0294|consen  213 CATFLDG--SELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEHE-YLVTAS  270 (362)
T ss_pred             eeeecCC--ceEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCce-EEEEec
Confidence            7777653  6899999999999999998                   8889999999999999984  45555 999999


Q ss_pred             eCCeEEEeecCcc
Q 018697          335 YDGRVVVESVKPF  347 (351)
Q Consensus       335 ~dg~v~vw~~~~~  347 (351)
                      .||.|+|||++..
T Consensus       271 SDG~I~vWd~~~~  283 (362)
T KOG0294|consen  271 SDGFIKVWDIDME  283 (362)
T ss_pred             cCceEEEEEcccc
Confidence            9999999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.97  E-value=9.7e-29  Score=190.33  Aligned_cols=308  Identities=16%  Similarity=0.243  Sum_probs=233.0

Q ss_pred             eeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC----ceEEE
Q 018697            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ----RIFST   83 (351)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~----~l~~~   83 (351)
                      +.|.-.++.-.+.|........|+++|++.....|+|.++.+.+++..+....-+.|+-+++.+.|.|+..    .|+++
T Consensus        39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence            34445556666777666566799999999888899999999999998888887789999999999999763    56664


Q ss_pred             EeecCCcceEEEEEcccccCCCCCCcceeeee-----eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018697           84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAA-----LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~  158 (351)
                           .+..+|+|.+..+..     ...+...     -..+.+++++..|+.-..+++.+++-|.+..|||++++.  ..
T Consensus       119 -----s~D~LRlWri~~ee~-----~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--~~  186 (364)
T KOG0290|consen  119 -----SSDFLRLWRIGDEES-----RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--SG  186 (364)
T ss_pred             -----ccCeEEEEeccCcCC-----ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc--cc
Confidence                 344899999874311     1122111     234678999999999888767777999999999999751  11


Q ss_pred             cccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc---e--eEEEEcCCCCCcEEEEecC-CC
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---H--VRNVDYDTKKKHLLVTAAD-ES  231 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~-dg  231 (351)
                      ........|..+|.+++|...+.. +++.+.||.+++||++..+....+...   +  ...++|+++..+++++-.. ..
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            222334467779999999986654 566789999999999987655444322   2  8899999999888877554 45


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      .|.|.|+|.+..++.++.+|...|+.++|.|.....|+|++.|..+.+||+.....+.             ...++..+.
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-------------~~dPilay~  333 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-------------GEDPILAYT  333 (364)
T ss_pred             eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-------------CCCchhhhh
Confidence            8999999999999999999999999999999998999999999999999998732211             123444454


Q ss_pred             cccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          312 DYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                       ....|+.+.|++..+.-++.+. ++.+.+-
T Consensus       334 -a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  334 -AGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             -ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence             4567999999976654455544 5555554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=4.5e-29  Score=201.86  Aligned_cols=280  Identities=18%  Similarity=0.262  Sum_probs=221.6

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +.++...+.....+.|    +.+....+++...+  + ....+.||...|+.+.|+|+...++++    +.|..|+||..
T Consensus       222 i~ald~~~s~~~ilTG----G~d~~av~~d~~s~--q-~l~~~~Gh~kki~~v~~~~~~~~v~~a----Sad~~i~vws~  290 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTG----GEDKTAVLFDKPSN--Q-ILATLKGHTKKITSVKFHKDLDTVITA----SADEIIRVWSV  290 (506)
T ss_pred             eeEEeecCCCCcceec----CCCCceEEEecchh--h-hhhhccCcceEEEEEEeccchhheeec----CCcceEEeecc
Confidence            3344444443444443    34545555555543  2 347788999999999999998888775    78999999998


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (351)
                      .         ..........|.++|+.+..+|.|.+ +++++.|++..+.|+.++..........   ..-.+++.+|+|
T Consensus       291 ~---------~~s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHp  357 (506)
T KOG0289|consen  291 P---------LSSEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHP  357 (506)
T ss_pred             c---------cccCccccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcC
Confidence            7         33455667799999999999999997 7788999999999999865554443321   112689999999


Q ss_pred             CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-CCCc
Q 018697          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHW  254 (351)
Q Consensus       179 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~  254 (351)
                      ||..+.+|..|+.|+|||+.++..+..|. +|   |..++|+.+| |+++++++|+.|++||+|+.. .++++.. ....
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~-n~kt~~l~~~~~  434 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK-NFKTIQLDEKKE  434 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc-ccceeecccccc
Confidence            99999999999999999999998888887 56   9999999998 589999999999999999844 5666653 2347


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      +.++.|.+.| .+|+.++.|=.|++++-.+                 ..+.++..+..|.+..+++.|....+ ++++++
T Consensus       435 v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~-----------------k~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~s  495 (506)
T KOG0289|consen  435 VNSLSFDQSG-TYLGIAGSDLQVYICKKKT-----------------KSWTEIKELADHSGLSTGVRFGEHAQ-YLASTS  495 (506)
T ss_pred             ceeEEEcCCC-CeEEeecceeEEEEEeccc-----------------ccceeeehhhhcccccceeeecccce-EEeecc
Confidence            9999999999 9999998886666666443                 12788888888998899999999888 899999


Q ss_pred             eCCeEEEeec
Q 018697          335 YDGRVVVESV  344 (351)
Q Consensus       335 ~dg~v~vw~~  344 (351)
                      .|..++++.+
T Consensus       496 md~~l~~~a~  505 (506)
T KOG0289|consen  496 MDAILRLYAL  505 (506)
T ss_pred             chhheEEeec
Confidence            9999999865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.9e-29  Score=205.78  Aligned_cols=242  Identities=21%  Similarity=0.286  Sum_probs=197.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      -.+.|.+++|+|..++=++++    ..-.+.||+..         ......++......|.++.|-.||+ +++++...|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt----~S~rvqly~~~---------~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG   90 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVT----SSVRVQLYSSV---------TRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESG   90 (487)
T ss_pred             ccCcceeEecCCCCCCceEEe----cccEEEEEecc---------hhhhhhhHHhhccceeEEEeecCCe-EEEccCCcC
Confidence            347899999999888655553    34579999987         5666777777889999999999999 355556789


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~  219 (351)
                      .|+|||+.+     ........+|+.++..+.|+|+++.++ +|+.|+.+++||+.+......+. +|   |.|.+|+|.
T Consensus        91 ~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~  164 (487)
T KOG0310|consen   91 HVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA  164 (487)
T ss_pred             cEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC
Confidence            999999653     223334457788999999999877655 56678899999999887533444 55   999999999


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      .+.++++|+.||.|++||+|.....+.++. |..+|..+.+-|.| ..+++++. ..|++||+..+              
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G--------------  227 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTG--------------  227 (487)
T ss_pred             CCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCC--------------
Confidence            988999999999999999998655666665 99999999999999 88998885 47999999962              


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                          ++.+.....|...|+|+.+..++. .|++++-|+.|++|++.++
T Consensus       228 ----~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  228 ----GQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             ----ceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccce
Confidence                566666666999999999999987 7999999999999997665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=6e-29  Score=196.96  Aligned_cols=244  Identities=16%  Similarity=0.295  Sum_probs=191.2

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+..|...|.+++.+|+. .++++   ||.|....||++.         ++.....+.+|++.|+++.|+.+|.+ ++
T Consensus        57 ~~tF~~H~~svFavsl~P~~-~l~aT---GGgDD~AflW~~~---------~ge~~~eltgHKDSVt~~~Fshdgtl-LA  122 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN-NLVAT---GGGDDLAFLWDIS---------TGEFAGELTGHKDSVTCCSFSHDGTL-LA  122 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC-ceEEe---cCCCceEEEEEcc---------CCcceeEecCCCCceEEEEEccCceE-EE
Confidence            35678899999999999944 55555   6889999999998         66788899999999999999999993 55


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      ++..+|.|+||+..++.....+...     ...+.=+.|+|.+..|++|+.||.+.+|.+.++...+.+. +|   +++=
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G  196 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCG  196 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccc
Confidence            5577999999999987665555411     2256778899999999999999999999999875555555 56   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------------------------------------------
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------------------------------------------  251 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------------------------  251 (351)
                      .|.|+|+ .++++..||+|++|++.+ ++++..+...                                           
T Consensus       197 ~f~pdGK-r~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  197 EFIPDGK-RILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             cccCCCc-eEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            9999999 799999999999999987 5565555411                                           


Q ss_pred             --------CCceeEEEec---CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          252 --------THWTWAVCCN---PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       252 --------~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                              ...+.++.+.   ..- .+.|+|+.||+|.|||+..                   ..+... -.|..+|..+
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~-------------------~~~R~~-c~he~~V~~l  333 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA-------------------STLRHI-CEHEDGVTKL  333 (399)
T ss_pred             Cccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc-------------------chhhee-ccCCCceEEE
Confidence                    1111122222   222 4677888888888888886                   444444 4688889999


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          321 AWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .|-+ .. +|++++.+|.|+.||.++
T Consensus       334 ~w~~-t~-~l~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  334 KWLN-TD-YLLTACANGKVRQWDART  357 (399)
T ss_pred             EEcC-cc-hheeeccCceEEeeeccc
Confidence            9999 45 788999999999999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.9e-29  Score=204.17  Aligned_cols=280  Identities=18%  Similarity=0.296  Sum_probs=209.9

Q ss_pred             eCCCCCeEEEEeeecCC--cceeeeeeCCC--CC--------ceEEEEee-cCCcceEEEEEccc--ccCCC--------
Q 018697           49 LSSGGTELICEGLFSHP--NEIWDLSSCPF--DQ--------RIFSTVFS-TGESYGAAIWQIPE--LYGQL--------  105 (351)
Q Consensus        49 ~~~~~~~~~~~~~~~h~--~~v~~i~~~~~--~~--------~l~~~~~~-~~~d~~i~vw~~~~--~~~~~--------  105 (351)
                      .|..+.++++..+..|.  -+-..+.|-|+  ..        +|+.+..+ ++....+.|=++.-  .....        
T Consensus        22 ~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e  101 (422)
T KOG0264|consen   22 IWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEE  101 (422)
T ss_pred             HHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCccccccccccccc
Confidence            45555666666666666  46667889886  22        44544433 34667777766421  11000        


Q ss_pred             ---------CCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccc-----cccccCcccc
Q 018697          106 ---------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQ-----SKQSSGMLHY  170 (351)
Q Consensus       106 ---------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~  170 (351)
                               ..... .+...-.|.+.|+.+.+.|.... ++++ +..+.|+|||..+........     .....+|...
T Consensus       102 ~~e~~g~~~~~~~v-~i~~~i~h~gEVnRaRymPQnp~-iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e  179 (422)
T KOG0264|consen  102 RGEFGGFGAVSGKV-EISQKINHDGEVNRARYMPQNPN-IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE  179 (422)
T ss_pred             ccccCCccccccce-EEEEeccCCccchhhhhCCCCCc-EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc
Confidence                     00011 12223469999999999999996 5555 778999999998643322211     1124467777


Q ss_pred             eeeeEECCCCC-cEEEeecCCeEEEEEcccCCc------Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          171 LSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       171 v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      -++++|++... .|++++.|+.|++||+.....      ......+|   |..++|++....+|++.+.|+.+.|||+|+
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~  259 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS  259 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence            88899998654 578889999999999986543      12223355   999999999988999999999999999995


Q ss_pred             -CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          241 -LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       241 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                       ..++.+...+|...|++++|+|.+..+||||+.|++|++||+|.                  ...++.++.+|...|..
T Consensus       260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn------------------L~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN------------------LNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             CCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh------------------cccCceeccCCCcceEE
Confidence             35677788899999999999999989999999999999999998                  25688999999999999


Q ss_pred             EEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          320 LAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      |.|+|....+||+++.|+.+.|||+...-
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccc
Confidence            99999988899999999999999997643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.6e-29  Score=199.44  Aligned_cols=249  Identities=18%  Similarity=0.273  Sum_probs=201.1

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +.+..|.++|+-+.||++|++|+++    +.|.+..+|.+..      ....+..+++.+|..+|..+.|+||.++ +++
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsa----SkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdry-Lla  286 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASA----SKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRY-LLA  286 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeec----cCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCe-EEe
Confidence            4567899999999999999999996    7999999999873      1235778899999999999999999997 777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---eeEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---HVRNVD  215 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~v~~~~  215 (351)
                      ++.|..+.+||+.++........    ++...+.+++|.||+..+++|+.|+.+..||+... .....+..   .|.+++
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLA  361 (519)
T ss_pred             cCchHheeeccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEE
Confidence            77788899999998765444333    23458999999999999999999999999999843 33333322   299999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      ..+||+ .+++.+.|..|++|+... ..... +.....+|++.+.+.++ +++++.-.+..+++||++.           
T Consensus       362 it~Dgk-~vl~v~~d~~i~l~~~e~-~~dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e-----------  426 (519)
T KOG0293|consen  362 ITYDGK-YVLLVTVDKKIRLYNREA-RVDRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEE-----------  426 (519)
T ss_pred             EcCCCc-EEEEEecccceeeechhh-hhhhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecch-----------
Confidence            999999 566677999999999875 32222 33456899999999999 9999999999999999998           


Q ss_pred             ccCCcccccccceeeccccce--EEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          296 VESPNQRANSLLNSYSDYEDS--VYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                              ...+..+.+|...  +-.-+|--....++++|++|+.|+||+-..
T Consensus       427 --------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s  471 (519)
T KOG0293|consen  427 --------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS  471 (519)
T ss_pred             --------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence                    8889999998653  333446544434899999999999999764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=215.59  Aligned_cols=257  Identities=20%  Similarity=0.315  Sum_probs=211.9

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      .+..|.+|+.-.  .......+.+|.+.|+++++..-+..|++    |+.|.++++||+.         ++++...+.+|
T Consensus       226 ~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----gS~D~t~rvWd~~---------sg~C~~~l~gh  290 (537)
T KOG0274|consen  226 DDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVS----GSTDKTERVWDCS---------TGECTHSLQGH  290 (537)
T ss_pred             CCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEE----EecCCcEEeEecC---------CCcEEEEecCC
Confidence            345555555443  44454559999999999999875556666    4789999999988         88999999999


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      .+.|.++...+.   .++.++.|.+|++|++.++...... .    +|..+|.++..+  +..+++|+.|++|++||+.+
T Consensus       291 ~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~-~----~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  291 TSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLL-R----GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             CceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEe-c----cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            999999987654   2455589999999999964433222 2    377799999997  78999999999999999999


Q ss_pred             CCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      ++++..+. +|   |.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-+..+.+.  + .+|++++.|++
T Consensus       361 ~~cl~sl~-gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~  434 (537)
T KOG0274|consen  361 GKCLKSLS-GHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGT  434 (537)
T ss_pred             ceeeeeec-CCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--c-ceeEecccccc
Confidence            99999998 57   999988775 4 799999999999999998427999999999999777654  3 89999999999


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      |++||...                   +++++++.+ |...|..+++.  .. .+++++.||.+++||++....
T Consensus       435 Ik~WD~~~-------------------~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  435 IKLWDAEE-------------------GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             EEEeeccc-------------------CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCch
Confidence            99999998                   899999988 66788888887  23 688999999999999987543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.1e-27  Score=175.40  Aligned_cols=262  Identities=15%  Similarity=0.217  Sum_probs=197.8

Q ss_pred             CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC------CCCCCcceeeeeeeccccceeEEE
Q 018697           54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG------QLNSPQLERIAALDAHVGKINCVL  127 (351)
Q Consensus        54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~  127 (351)
                      +.+....+..-...|.+++|+|.|...++    |+...+++|........      ....+.....+.-+.|.+.|.|.+
T Consensus        21 ~~f~~i~~l~dsqairav~fhp~g~lyav----gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   21 KHFEAINILEDSQAIRAVAFHPAGGLYAV----GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             cceEEEEEecchhheeeEEecCCCceEEe----ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence            34455555666789999999999977766    47888888887653311      111222233344467899999999


Q ss_pred             ecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC----CCcEEEee-cCCeEEEEEcccCCc
Q 018697          128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAAT-CESSVQFWDLRSMGK  202 (351)
Q Consensus       128 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~iwd~~~~~~  202 (351)
                      |+|+|. ++++++.|.+|++...+.......-...+..-|...|..++|..+    +..|++++ .|..|++-|...++.
T Consensus        97 ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence            999999 355558999999988775433322222334456679999999543    34455544 688899989988888


Q ss_pred             Cceeecce---eEEE-EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--C-----CCceeEEEecCCCCCeEEEe
Q 018697          203 TNSIEHAH---VRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--H-----THWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       203 ~~~~~~~~---v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~l~s~  271 (351)
                      ...+. +|   |.++ .|  ++- ++++|+.|.+|++||+|- ..++.++..  |     .+.|..++..|.| ++|++|
T Consensus       176 ~~a~s-ghtghilalysw--n~~-m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg  249 (350)
T KOG0641|consen  176 FHALS-GHTGHILALYSW--NGA-MFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASG  249 (350)
T ss_pred             ceeec-CCcccEEEEEEe--cCc-EEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCc-ceeeec
Confidence            87776 55   4443 44  344 899999999999999997 446666542  2     2568999999999 999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      -.|.+..+||++-                   +..++.+..|+..|+++.|+|... ++.+++.|..|++=|++.
T Consensus       250 ~~dssc~lydirg-------------------~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  250 HADSSCMLYDIRG-------------------GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             cCCCceEEEEeeC-------------------CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeeccc
Confidence            9999999999998                   899999999999999999999765 899999999999998864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8.1e-28  Score=186.15  Aligned_cols=280  Identities=17%  Similarity=0.234  Sum_probs=214.0

Q ss_pred             eecccc-ceeEeeeecCCCCcceEE-EeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697            9 GYGLKY-QARCISDVKADTDHTSFL-TGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus         9 ~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      .|.+.- +...|..++++|...-++ .|+    -++.+++|.+... +.+..+....|+++|.+++|+.+|..++++   
T Consensus        19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~S----WD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g---   90 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALAFSPQADNLLAAGS----WDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSG---   90 (347)
T ss_pred             ceecCCCcccchheeEeccccCceEEecc----cCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEee---
Confidence            344333 456788899999554444 554    4899999999987 444557778899999999999999888874   


Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc-EEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD-KLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                       +.|+.+++||+.         +. .+..+..|.++|.++.|-+...+- +++++.|.+|+.||.+.......+...+  
T Consensus        91 -~~Dk~~k~wDL~---------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--  157 (347)
T KOG0647|consen   91 -GCDKQAKLWDLA---------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--  157 (347)
T ss_pred             -ccCCceEEEEcc---------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--
Confidence             799999999998         44 456777999999999998876533 5556999999999999655554444333  


Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-eec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                          .++++..-  ...++++..+..|.+|+++++..... +..  .. ++|++..++.. ..+.|+-+|.+.+..+..+
T Consensus       158 ----RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  158 ----RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             ----eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCC
Confidence                67776543  45688888999999999987643322 221  12 99999999888 5688999999999988763


Q ss_pred             C-cceeEeeCCC---------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          242 K-APIQELPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       242 ~-~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      . +.-..|+.|.         ..|++|+|+|.. ..|+|++.||++.+||-..                   ...+.+.+
T Consensus       231 ~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda-------------------r~kLk~s~  290 (347)
T KOG0647|consen  231 NPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA-------------------RTKLKTSE  290 (347)
T ss_pred             CccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh-------------------hhhhhccC
Confidence            2 2233455555         257899999988 8999999999999999988                   77788888


Q ss_pred             cccceEEEEEeCCCCCceEEEeeeC
Q 018697          312 DYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      .|..+|++.+|+.+|..+..+.++|
T Consensus       291 ~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  291 THPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cCCCccceeEecCCCCEEEEEeecc
Confidence            9999999999999999433344444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-28  Score=184.29  Aligned_cols=253  Identities=21%  Similarity=0.324  Sum_probs=196.1

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC--CCCCcEEEE
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLVS  139 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~  139 (351)
                      ..|++.|+++...-.|++|+++    +.|++|+|+....      +...+++.+|.+|.++|+.++|..  .|. +++++
T Consensus         8 t~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLASc   76 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRN------NGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASC   76 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcC------CCCceeeeEecCCCCCeeEEeecccccCc-EeeEe
Confidence            4699999999988889999886    7999999999983      223478899999999999999965  455 34445


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccC--CcCceeecce---eE
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSM--GKTNSIEHAH---VR  212 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~---v~  212 (351)
                      +.||.|.||.-..+. -  ........|...|++++|.|.  |-.|++++.||.|.+.+.++.  -....+...|   ++
T Consensus        77 sYDgkVIiWke~~g~-w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   77 SYDGKVIIWKEENGR-W--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             ecCceEEEEecCCCc-h--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence            899999999988652 2  222334567889999999986  456788899999999988764  2334444456   99


Q ss_pred             EEEcCCC---C----------CcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCC---CCeEEEeeCCC
Q 018697          213 NVDYDTK---K----------KHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY---DGFILSAGTDS  275 (351)
Q Consensus       213 ~~~~~~~---~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg  275 (351)
                      +++|.|.   |          .+.|++|+-|..|+||+..... ...+++.+|...|..++|.|.-   ..+|++++.||
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            9999986   3          1359999999999999988632 2344588999999999999964   46899999999


Q ss_pred             eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++.||-.+....+          +   +.+++..   ....++.+.||+.|. +|+.++.|+.|.+|.-+
T Consensus       234 ~viIwt~~~e~e~----------w---k~tll~~---f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  234 TVIIWTKDEEYEP----------W---KKTLLEE---FPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cEEEEEecCccCc----------c---ccccccc---CCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence            9999988741110          0   0233333   456799999999999 89999999999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=4.3e-28  Score=196.23  Aligned_cols=236  Identities=18%  Similarity=0.285  Sum_probs=197.3

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      ..+.++...|....+++    ||.|..+.++|.+         ..+.+..+++|...|+.+.++|+... ++.++.|..|
T Consensus       220 pgi~ald~~~s~~~ilT----GG~d~~av~~d~~---------s~q~l~~~~Gh~kki~~v~~~~~~~~-v~~aSad~~i  285 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILT----GGEDKTAVLFDKP---------SNQILATLKGHTKKITSVKFHKDLDT-VITASADEII  285 (506)
T ss_pred             CCeeEEeecCCCCccee----cCCCCceEEEecc---------hhhhhhhccCcceEEEEEEeccchhh-eeecCCcceE
Confidence            46777878887555655    6899999999988         67889999999999999999999883 5666889999


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e---eEEEEcCCCCC
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKK  221 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---v~~~~~~~~~~  221 (351)
                      +||...........     ..|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .   +++.+|+|||-
T Consensus       286 ~vws~~~~s~~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL  360 (506)
T KOG0289|consen  286 RVWSVPLSSEPTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL  360 (506)
T ss_pred             EeeccccccCcccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce
Confidence            99998754322222     245669999999999999999999999999999999887766642 2   99999999997


Q ss_pred             cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                       +|.+|..|+.++|||+.. ...+..|.+|+++|..++|+.+| .+|+++..|+.|++||++.                 
T Consensus       361 -ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK-----------------  420 (506)
T KOG0289|consen  361 -IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK-----------------  420 (506)
T ss_pred             -EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh-----------------
Confidence             999999999999999998 55789999999999999999999 9999999999999999998                 


Q ss_pred             cccccceeeccc-cceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          302 RANSLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       302 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                        .+...++.-. ..+|.++.|.+.|. +|+.++.|=.|++++
T Consensus       421 --l~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  421 --LKNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICK  460 (506)
T ss_pred             --hcccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEe
Confidence              5555555432 23699999999999 788887665555554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.8e-29  Score=209.28  Aligned_cols=250  Identities=18%  Similarity=0.289  Sum_probs=204.4

Q ss_pred             CCccee---eeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           64 HPNEIW---DLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        64 h~~~v~---~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      |...|.   .+..++ .+++|++    ||.||.|++|+.....+..   ....+..++.|.+.|..+....+++. ++++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfT----gGRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~t-lIS~   91 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFT----GGRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKT-LISA   91 (735)
T ss_pred             ccccccchhhccccCCCCceEEe----cCCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCc-eEEe
Confidence            444444   444544 4555777    5899999999998543322   22246788899999999999999974 7888


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-CCCCCcEEEeecCCeEEEEEcccCCc--Cceee--------c
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGK--TNSIE--------H  208 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--------~  208 (351)
                      +.|-+|++|+.....   .........|...|.+++. .++...+++|+-|+.|.+||++++..  +..+.        .
T Consensus        92 SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             cCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            899999999998654   1122223357789999999 77888888999999999999998732  22221        1


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      ++   +++++.++.|. ++++|+.++.+++||.++ .+.+..+.+|+..|..+..+++| ..+++++.||+|++||+.. 
T Consensus       169 G~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq-  244 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ-  244 (735)
T ss_pred             CCccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccc-
Confidence            23   99999999996 899999999999999998 55677888999999999999999 9999999999999999998 


Q ss_pred             CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                        ..++.++..|...|+++..+|+-. .+.+|+.||.|..=|+..+
T Consensus       245 ------------------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  245 ------------------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------------------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCc
Confidence                              899999999999999999999888 8999999999999888764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.1e-29  Score=193.53  Aligned_cols=252  Identities=11%  Similarity=0.151  Sum_probs=205.4

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      .++...-+.|..|+||+++|++    |+.||.|.+||.....-.+ ....+....+--+.++|.|+.|+.|.. ++++++
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvs----gSvDGFiEVWny~~GKlrK-DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGs  282 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVS----GSVDGFIEVWNYTTGKLRK-DLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGS  282 (508)
T ss_pred             ecccccchhheeeCCCCceEee----ccccceeeeehhccchhhh-hhhhhhhcceeecccceEEEeecccHH-HhhccC
Confidence            4567788899999999999998    5899999999987210000 001112223445788999999999998 355668


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                      .||.|++|.+.++.....+..    .|+..|+++.|+.|+..+++++.|.++++.-+.+|+++..+. +|   |+...|.
T Consensus       283 qDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft  357 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFT  357 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEc
Confidence            999999999998776655543    567789999999999999999999999999999999999998 66   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      ++|. .+++++.||+|++|+.++ ..++.+++  +...+|+++..-|.++..++.+...++|.|.++.            
T Consensus       358 ~dG~-~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q------------  423 (508)
T KOG0275|consen  358 DDGH-HIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ------------  423 (508)
T ss_pred             CCCC-eEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc------------
Confidence            9998 799999999999999997 77888877  3557899999999998999999999999999987            


Q ss_pred             ccCCcccccccceeeccc---cceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          296 VESPNQRANSLLNSYSDY---EDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                              ++.++++...   .+...+...+|.|. .+.+.+.|+.++.+.+.+
T Consensus       424 --------GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  424 --------GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             --------ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec
Confidence                    5777777532   23345667899999 577888999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.9e-29  Score=209.82  Aligned_cols=275  Identities=16%  Similarity=0.257  Sum_probs=219.9

Q ss_pred             eCCCCEEEEEEeCCCCCe---EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018697           38 LKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (351)
                      .+.++.|+.|.+..+.+.   -....+..|.+.|+++..+.+++.|+++    +.|.+|++|+...       ..--+..
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~----SsDtTVK~W~~~~-------~~~~c~s  111 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA----SSDTTVKVWNAHK-------DNTFCMS  111 (735)
T ss_pred             cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe----cCCceEEEeeccc-------CcchhHh
Confidence            467899999999877653   2245677899999999999999999986    7999999999882       1125678


Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--C---cccccccc-cCcccceeeeEECCCCCcEEEeec
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--N---AQVQSKQS-SGMLHYLSGGAWDPHDVNAVAATC  188 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  188 (351)
                      +++.|++-|.|+++-.....++++++-|+.|++||++++..  .   ........ .++...+++++-++.+..+++|+.
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            89999999999999444443455558899999999997632  1   11111112 277889999999999988999999


Q ss_pred             CCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC
Q 018697          189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       189 d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (351)
                      .+.+++||.++++.+..+. +|   |.++-.+++|. .++++++||+|++||++. .+++.++..|...|+++..+|+= 
T Consensus       192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf-  267 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSF-  267 (735)
T ss_pred             ccceEEeccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCc-
Confidence            9999999999999999998 78   99999999998 799999999999999997 78999999999999999999988 


Q ss_pred             CeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .++++|+.||.|..=|+++.                  .+....+ ....+|..+..+.... -+-+++.|+.|+-|..+
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~------------------~~~tlic-k~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNP------------------AKSTLIC-KEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             ceEEecCCCCcEEecccCCc------------------hhheEee-cCCCchhhhhhccccC-CceeeeccccceecCCc
Confidence            99999999999999999871                  2222222 2344677777775444 23566778899999876


Q ss_pred             cc
Q 018697          346 PF  347 (351)
Q Consensus       346 ~~  347 (351)
                      ..
T Consensus       328 ~~  329 (735)
T KOG0308|consen  328 PD  329 (735)
T ss_pred             cc
Confidence            54

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.3e-29  Score=213.54  Aligned_cols=255  Identities=16%  Similarity=0.214  Sum_probs=196.4

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc---ccceeEEEecCCCCCcEEEEec
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      +.....|..+++...++.+     ....++||.+.....     ..++...++..   .-.+..|.|......++++++.
T Consensus        39 k~~~nAIs~nr~~~qiv~A-----Grs~lklyai~~~~~-----~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~  108 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVA-----GRSLLKLYAINPNDF-----SEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST  108 (839)
T ss_pred             ccccceEeecCCcceeEEe-----cccceeeEeeCcccC-----CcceeeecccccceeeehhhcccccchhhhheeecC
Confidence            3456677788888888876     344788888773210     11222222111   1245678898766666777788


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~  218 (351)
                      .|.|.+||+.......  ....+..|...+..+.|++.... |++|+.||+|++||++..+...++....  |+.++|+|
T Consensus       109 nG~i~vWdlnk~~rnk--~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNK--LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             CCcEEEEecCccccch--hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            9999999999632222  22234467889999999987654 6678999999999999988887777443  99999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                      ...+.|+++.+.|.+++||+|.+.++...+.+|.++|.++.|+|++ .+|||||.|+.|+|||+...             
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~-------------  252 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDS-------------  252 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCC-------------
Confidence            9888999999999999999999999999999999999999999987 99999999999999999861             


Q ss_pred             CcccccccceeeccccceEEEEEeCCCCCceEEEee--eCCeEEEeecC-ccccc
Q 018697          299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS--YDGRVVVESVK-PFLSR  350 (351)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~-~~~~~  350 (351)
                          ...+..++. ...+|..+.|-|..++.||+++  .|-.|+|||+. +|+|+
T Consensus       253 ----~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  253 ----RAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             ----CccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence                123333332 3467999999999998999887  58899999996 67664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.2e-28  Score=186.14  Aligned_cols=244  Identities=17%  Similarity=0.230  Sum_probs=187.9

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      .-++.|.+|+|||....++++   ++-|++||+|+++..      +...+ +....|.++|.+++|+.+|.. +++++.|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A---~SWD~tVR~wevq~~------g~~~~-ka~~~~~~PvL~v~Wsddgsk-Vf~g~~D   93 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAA---GSWDGTVRIWEVQNS------GQLVP-KAQQSHDGPVLDVCWSDDGSK-VFSGGCD   93 (347)
T ss_pred             CcccchheeEeccccCceEEe---cccCCceEEEEEecC------Ccccc-hhhhccCCCeEEEEEccCCce-EEeeccC
Confidence            346799999999977777766   699999999999831      11222 445679999999999999984 6777889


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC--cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCC
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK  219 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~  219 (351)
                      +.+++||+.+++ ...+-     .|..+|..+.|-+...  .|++|+.|.+|++||++...++.++..+. +.++..-  
T Consensus        94 k~~k~wDL~S~Q-~~~v~-----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--  165 (347)
T KOG0647|consen   94 KQAKLWDLASGQ-VSQVA-----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--  165 (347)
T ss_pred             CceEEEEccCCC-eeeee-----ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--
Confidence            999999999763 32222     3566999999977655  68999999999999999999999888766 7777664  


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                      .+ +++++..+..|.+|+++.+....+..+ .-.-.+.+|+..++. ...+.|+-+|.+.+..+....            
T Consensus       166 ~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~------------  231 (347)
T KOG0647|consen  166 YP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPN------------  231 (347)
T ss_pred             Cc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCC------------
Confidence            33 788899999999999986433222222 123457899998888 666999999999999888621            


Q ss_pred             Ccccccccceeecccc---------ceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          299 PNQRANSLLNSYSDYE---------DSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       299 ~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                           ...-.+|+.|.         -.|++|+|+|... .|+++|.||++.+||-+
T Consensus       232 -----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  232 -----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             -----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence                 13334555554         2588999999877 89999999999999964

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.3e-26  Score=178.61  Aligned_cols=279  Identities=16%  Similarity=0.207  Sum_probs=218.8

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+.++.++.++..++.++    +++.+++++.....   ..+.+..++-.|..++|-.....++.+.  ...|.+|+.
T Consensus        14 ~~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sS--tk~d~tIry   84 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSS----EDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSS--TKEDDTIRY   84 (311)
T ss_pred             CCceeEEEecCCCCEEEEec----CCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEcc--CCCCCceEE
Confidence            44577888999998888754    67889988877643   3355666777899999976666665542  345889999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      -++.         ..+.++-+.+|...|.+++.+|-+. .+++++.|++|++||++..+....+.. .      .-...+
T Consensus        85 Lsl~---------dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~------~~pi~A  147 (311)
T KOG1446|consen   85 LSLH---------DNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-S------GRPIAA  147 (311)
T ss_pred             EEee---------cCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-C------CCccee
Confidence            9998         6789999999999999999999887 488889999999999996443333222 1      344568


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccC--CcCceeecc---e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHA---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      |.|+|-.++++...+.|++||++.-  .+..++...   +  .+.+.|+|+|+ .++.+...+.+++.|.-. +....++
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~-G~~~~tf  225 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFD-GTVKSTF  225 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccC-CcEeeeE
Confidence            9999998888887779999999964  344444433   2  99999999999 566678889999999876 6677777


Q ss_pred             eCCCCce---eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCC
Q 018697          249 PGHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSS  324 (351)
Q Consensus       249 ~~~~~~v---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  324 (351)
                      ..+...-   ....|.|++ .++++|+.||+|.+|++++                   +..+..+.+ +..++.++.|+|
T Consensus       226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t-------------------g~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET-------------------GKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC-------------------CcEeeEecCCCCCCccccccCC
Confidence            7665432   577899999 9999999999999999998                   888888887 688899999999


Q ss_pred             CCCceEEEeeeCCeEEEeecC
Q 018697          325 REPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .-. ++++++  ..+.+|=..
T Consensus       286 ~~~-mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  286 RYA-MFVSAS--SNLVFWLPD  303 (311)
T ss_pred             cee-eeeecC--ceEEEEecc
Confidence            765 566654  577788654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.3e-29  Score=223.05  Aligned_cols=276  Identities=18%  Similarity=0.337  Sum_probs=220.2

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc---eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      .|.-+++......+.......-...-+.++|.+.+..   |+++   |.+||.|.+||....   ........+.++..|
T Consensus        42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG---G~edG~I~ly~p~~~---~~~~~~~~la~~~~h  115 (1049)
T KOG0307|consen   42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG---GLEDGNIVLYDPASI---IANASEEVLATKSKH  115 (1049)
T ss_pred             ceeeecccCccccccccccccccccceeeeecccCCCccceeec---cccCCceEEecchhh---ccCcchHHHhhhccc
Confidence            3444444444433333333344567889999998877   5665   689999999998742   112345667788899


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLR  198 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~  198 (351)
                      ++.|..+.|++....++++++.||.|.|||+++.+.....-   .....+.|.+++|+..-.. |++++.+|.+.|||++
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            99999999999998756666889999999999754443332   2223458999999987655 5566788899999999


Q ss_pred             cCCcCceeecce----eEEEEcCCCCCcEEEEecCCC---eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      ..+.+..+....    +..++|+|++...++++++|.   .|.+||+|....+++++++|...|.++.|++.++++|+++
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs  272 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS  272 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence            987776665222    889999999886777777653   7999999998889999999999999999999988999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.|+.|.+|+.++                   ++.+..+....+++..+.|+|..+.+|+.++.||.|.||.+..
T Consensus       273 gkD~~ii~wN~~t-------------------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  273 GKDNRIICWNPNT-------------------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             cCCCCeeEecCCC-------------------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            9999999999999                   9999999888889999999999888899999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-28  Score=209.93  Aligned_cols=285  Identities=15%  Similarity=0.248  Sum_probs=209.7

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEee----ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGL----FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ++...++..++++...     ..+.++.+.+..........    ....-.+.++.|......+++++   +..|.|.+|
T Consensus        44 AIs~nr~~~qiv~AGr-----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~---s~nG~i~vW  115 (839)
T KOG0269|consen   44 AISVNRDINQIVVAGR-----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC---STNGVISVW  115 (839)
T ss_pred             eEeecCCcceeEEecc-----cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee---cCCCcEEEE
Confidence            3445566666665432     23344555554332222111    11123556788987666777774   789999999


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      |+...      ...+.+..+..|+..+.++.|++...+++++++.||.|++||++..........     ....|.+++|
T Consensus       116 dlnk~------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----nSESiRDV~f  184 (839)
T KOG0269|consen  116 DLNKS------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----NSESIRDVKF  184 (839)
T ss_pred             ecCcc------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-----cchhhhceee
Confidence            99821      123556678999999999999999999888889999999999996544433332     3458999999


Q ss_pred             CCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCC
Q 018697          177 DPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGH  251 (351)
Q Consensus       177 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~  251 (351)
                      +|.. .+++++...|.+.+||+|..........+|   |.|+.|+|++. +||||+.|+.|+|||+.... .++.++. .
T Consensus       185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn-T  262 (839)
T KOG0269|consen  185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN-T  262 (839)
T ss_pred             ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe-e
Confidence            9964 456677788999999999765433333366   99999999776 89999999999999998522 3444444 4


Q ss_pred             CCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018697          252 THWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (351)
                      ..+|.+|+|-|..+..|++++.  |-.|+|||++.                  .--+..++..|...++.++|.....-.
T Consensus       263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR------------------PYIP~~t~~eH~~~vt~i~W~~~d~~~  324 (839)
T KOG0269|consen  263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR------------------PYIPYATFLEHTDSVTGIAWDSGDRIN  324 (839)
T ss_pred             cceeeeeeeccCccchhhhhhccccceEEEEeecc------------------ccccceeeeccCccccceeccCCCcee
Confidence            6899999999999788888875  77999999997                  256778899999999999998755558


Q ss_pred             EEEeeeCCeEEEeec
Q 018697          330 FASLSYDGRVVVESV  344 (351)
Q Consensus       330 l~s~~~dg~v~vw~~  344 (351)
                      +.+++.|+.|..-.+
T Consensus       325 l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  325 LWSCSKDGTVLQHLF  339 (839)
T ss_pred             eEeecCccHHHHhhh
Confidence            899999998765433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.6e-28  Score=199.60  Aligned_cols=257  Identities=16%  Similarity=0.282  Sum_probs=190.5

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ..+.+|...|.++++.|.|.++++    |+.|..|++||+....     ...+..+.+. .....|.+++|++.+.. ++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~s----Gs~Dy~v~~wDf~gMd-----as~~~fr~l~P~E~h~i~sl~ys~Tg~~-iL  230 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVS----GSLDYTVKFWDFQGMD-----ASMRSFRQLQPCETHQINSLQYSVTGDQ-IL  230 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeee----ccccceEEEEeccccc-----ccchhhhccCcccccccceeeecCCCCe-EE
Confidence            456788899999999999999988    5899999999997321     1222222332 23457899999999996 44


Q ss_pred             EEecCCcEEEEEcCCCCCCccccc--------ccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcC-ceee
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQS--------KQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKT-NSIE  207 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~  207 (351)
                      +.+.....+|+|-.... ......        ....+|...+++.+|+|..+ .+++++.||++++||+...+.. ..+.
T Consensus       231 vvsg~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             EEecCcceeEEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            44556789999976422 222111        12468999999999999865 4778899999999999875433 3333


Q ss_pred             cc----e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-c-eeEeeCCCC--ceeEEEecCCCCCeEEEeeCCCe
Q 018697          208 HA----H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-P-IQELPGHTH--WTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       208 ~~----~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      ..    .   +..++|+|+++ +||+|+.||.|.+|+.+.... + ...-..|..  .|++|.|+++| ++|++-+.|++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~t  387 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDT  387 (641)
T ss_pred             eccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCc
Confidence            11    1   89999999999 799999999999999865321 2 333457776  89999999999 99999999999


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeee------CCeEEEeecCcc
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSY------DGRVVVESVKPF  347 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~------dg~v~vw~~~~~  347 (351)
                      +++||++..                  .+++.+..+-  .-+-+.++|||+.+ +|++|..      .|.+.+||-.++
T Consensus       388 LKvWDLrq~------------------kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  388 LKVWDLRQF------------------KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL  447 (641)
T ss_pred             eeeeecccc------------------ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce
Confidence            999999972                  4555555432  22346789999998 8888763      567888886554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=6.2e-28  Score=198.88  Aligned_cols=263  Identities=16%  Similarity=0.189  Sum_probs=217.5

Q ss_pred             CCCEEEEEEeCCCCCeEEEEe--eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           40 EENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      ..+.|.+|++...+++.-...  .....+-|.++...||++.|++    ||.-.++.|||+..       ++......+.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGeastlsiWDLAa-------pTprikaelt  506 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEASTLSIWDLAA-------PTPRIKAELT  506 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----ccccceeeeeeccC-------CCcchhhhcC
Confidence            457889999987655433332  3345688999999999999999    47888999999983       3444444555


Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      ...-.+.+++.+||.+ +.+++..||.|.|||+.+     +.+...+.+|...+.|+..+++|..|-+|+-|++|+-||+
T Consensus       507 ssapaCyALa~spDak-vcFsccsdGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  507 SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             CcchhhhhhhcCCccc-eeeeeccCCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            5556788899999998 477778899999999985     2333455688899999999999999999999999999999


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      +++..+....... |.++.++|.+. ++++|-+++.+.+.....+  ....+..|++-|.++.|++.| +++++.+.|..
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cG-kwfvStGkDnl  656 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNL  656 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEEEEEecccC-ceeeecCchhh
Confidence            9988776655444 99999999999 8999999999999888753  345667799999999999999 99999999999


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +..|.+..                   +..+...+. ..+|.+++.+.|++ ++++|+.|....||.+
T Consensus       657 LnawrtPy-------------------GasiFqskE-~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  657 LNAWRTPY-------------------GASIFQSKE-SSSVLSCDISFDDK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhhccCcc-------------------ccceeeccc-cCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence            99999988                   777777655 45699999999998 8999999999999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.1e-28  Score=188.37  Aligned_cols=252  Identities=21%  Similarity=0.356  Sum_probs=208.3

Q ss_pred             EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcE
Q 018697           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  136 (351)
                      +.+.+.+|.+.|+.++.....+.+.+    .+.|.+.+||.++         .+.++.++.+|.+.|+++.|++.+. ++
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gt----ASADhTA~iWs~E---------sg~CL~~Y~GH~GSVNsikfh~s~~-L~  205 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGT----ASADHTARIWSLE---------SGACLATYTGHTGSVNSIKFHNSGL-LL  205 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceee----cccccceeEEeec---------cccceeeecccccceeeEEeccccc-eE
Confidence            34567899999999998765554444    3899999999999         7899999999999999999999988 46


Q ss_pred             EEEecCCcEEEEEc------CCCC-----------------------------CCcccccccccCcccceeeeEECCCCC
Q 018697          137 LVSIDEENIFLWSL------DCSN-----------------------------KNAQVQSKQSSGMLHYLSGGAWDPHDV  181 (351)
Q Consensus       137 ~~~~~d~~v~iwd~------~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~  181 (351)
                      ++++.|++-.||..      ....                             ....+......+|...|.+..|...++
T Consensus       206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence            66688999999972      1100                             000111122456777888889999999


Q ss_pred             cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018697          182 NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (351)
Q Consensus       182 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  258 (351)
                      .+++++.|.+..+||+++++.+..+. +|   .+.++-+|..+ ++++.+.|.+.++||+|..-+.+..|++|...|+++
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~  363 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV  363 (481)
T ss_pred             eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence            99999999999999999999988887 66   88889999988 899999999999999997667788999999999999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  338 (351)
                      .|..+.  .+++|+.|.+|++||+++                  ...++.++.. ..+++.++.+..++ +++.--++..
T Consensus       364 vF~~dd--~vVSgSDDrTvKvWdLrN------------------MRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRq  421 (481)
T KOG0300|consen  364 VFNTDD--RVVSGSDDRTVKVWDLRN------------------MRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQ  421 (481)
T ss_pred             EEecCC--ceeecCCCceEEEeeecc------------------ccCcceeeec-CCccceeEeecCCc-eEEeccCCce
Confidence            999875  789999999999999997                  2566777754 45689999998877 8888888889


Q ss_pred             EEEeecCc
Q 018697          339 VVVESVKP  346 (351)
Q Consensus       339 v~vw~~~~  346 (351)
                      |++||++.
T Consensus       422 vRlfDlnG  429 (481)
T KOG0300|consen  422 VRLFDLNG  429 (481)
T ss_pred             EEEEecCC
Confidence            99999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1e-26  Score=180.62  Aligned_cols=271  Identities=16%  Similarity=0.194  Sum_probs=210.1

Q ss_pred             ecccc-ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697           10 YGLKY-QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        10 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      +.++. +...|+.+.+++....|+++++    ++.++++++....    ......|..++.+++|.++. .+++    |+
T Consensus         6 ~~l~npP~d~IS~v~f~~~~~~LLvssW----DgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~~-~~~~----G~   72 (323)
T KOG1036|consen    6 FELENPPEDGISSVKFSPSSSDLLVSSW----DGSLRLYDVPANS----LKLKFKHGAPLLDCAFADES-TIVT----GG   72 (323)
T ss_pred             cccCCCChhceeeEEEcCcCCcEEEEec----cCcEEEEeccchh----hhhheecCCceeeeeccCCc-eEEE----ec
Confidence            34444 3457888899988899999875    7899999988763    34456799999999999844 4445    58


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .||.|+++|+..          .....+..|..+|.|+.+++.... +++++.|++|++||............      .
T Consensus        73 ~dg~vr~~Dln~----------~~~~~igth~~~i~ci~~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d~------~  135 (323)
T KOG1036|consen   73 LDGQVRRYDLNT----------GNEDQIGTHDEGIRCIEYSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFDQ------G  135 (323)
T ss_pred             cCceEEEEEecC----------CcceeeccCCCceEEEEeeccCCe-EEEcccCccEEEEecccccccccccc------C
Confidence            999999999982          334566789999999999986663 88889999999999985222222111      2


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--  242 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  242 (351)
                      ..|.++...  ++.|++|+.+..+.+||+++.....+.....    ++|+++-|++. -+++++-||.|.+=.+....  
T Consensus       136 kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~  212 (323)
T KOG1036|consen  136 KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEA  212 (323)
T ss_pred             ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHH
Confidence            278887765  6789999999999999999876555433222    99999999776 57889999998887665421  


Q ss_pred             -cceeEeeCCC---------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          243 -APIQELPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       243 -~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                       ..-..|+.|.         .+|++|+|+|-. ..|+||+.||.|.+||...                   .+.+..+..
T Consensus       213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~-------------------rKrl~q~~~  272 (323)
T KOG1036|consen  213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFN-------------------RKRLKQLAK  272 (323)
T ss_pred             hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcc-------------------hhhhhhccC
Confidence             2233455554         479999999998 8999999999999999998                   777888877


Q ss_pred             ccceEEEEEeCCCCCceEEEee
Q 018697          313 YEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      ....|.+++|+.+|. .||.++
T Consensus       273 ~~~SI~slsfs~dG~-~LAia~  293 (323)
T KOG1036|consen  273 YETSISSLSFSMDGS-LLAIAS  293 (323)
T ss_pred             CCCceEEEEeccCCC-eEEEEe
Confidence            777899999999999 788876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.7e-27  Score=182.06  Aligned_cols=241  Identities=15%  Similarity=0.163  Sum_probs=190.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      -+..|.++.|+|.+..|+++    +.||++++|++.         .......+ .|..++++++|.++..  +++++.||
T Consensus        12 P~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~---------~~~l~~~~-~~~~plL~c~F~d~~~--~~~G~~dg   75 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVS----SWDGSLRLYDVP---------ANSLKLKF-KHGAPLLDCAFADEST--IVTGGLDG   75 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEE----eccCcEEEEecc---------chhhhhhe-ecCCceeeeeccCCce--EEEeccCc
Confidence            35789999999999998886    699999999998         33333344 6899999999999776  78889999


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH  222 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~  222 (351)
                      .|+.+|++++.....      ..|...+.++.+.+....+++|+.|++|++||.+.......+..+. |.++....+   
T Consensus        76 ~vr~~Dln~~~~~~i------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~---  146 (323)
T KOG1036|consen   76 QVRRYDLNTGNEDQI------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGN---  146 (323)
T ss_pred             eEEEEEecCCcceee------ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCC---
Confidence            999999997543221      2356699999999988999999999999999999877777776555 999888643   


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      .|++|+.+..+.+||+|+...+.+... .....+.++++-|.+ .=++.++-||.|.+=.+...  ++            
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s--~~------------  211 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDS--EE------------  211 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCc--hH------------
Confidence            688899999999999998776654333 345678999999977 66788899999887666541  00            


Q ss_pred             cccccceeecccc---------ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          302 RANSLLNSYSDYE---------DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       302 ~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                       ....-..|+.|.         -+|++++|+|-.. .||||+.||.|.+||+.+
T Consensus       212 -~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  212 -AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             -HhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcc
Confidence             023344555554         3799999999876 899999999999999865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=198.35  Aligned_cols=247  Identities=17%  Similarity=0.256  Sum_probs=204.0

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+..|.+.|+.+.|-++...|++    ||.|..|++|+...       .....+.++.+..++|+++.|.+++.+ +++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlat----gg~Dr~Ik~W~v~~-------~k~~~~~tLaGs~g~it~~d~d~~~~~-~iA  236 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLAT----GGSDRIIKLWNVLG-------EKSELISTLAGSLGNITSIDFDSDNKH-VIA  236 (459)
T ss_pred             hhhhccccccceeEEccCcchhhh----cchhhhhhhhhccc-------chhhhhhhhhccCCCcceeeecCCCce-EEe
Confidence            345679999999999998888877    58999999999872       234577788888899999999999996 778


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcC
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD  217 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~  217 (351)
                      ++.|+.+++|+++.....     ....+|+..|+++.|......+++++.|.+|++||+....+..++.... +..|+.+
T Consensus       237 as~d~~~r~Wnvd~~r~~-----~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~  311 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDSLRLR-----HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS  311 (459)
T ss_pred             ecCCCceeeeeccchhhh-----hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec
Confidence            889999999999853322     2344688899999998776669999999999999999988888777555 7777776


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      +  . .+++|..|++|++||.|. ..+......+. .|+++..++++ ..+.+++.|.++.+.|++.             
T Consensus       312 ~--~-~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt-------------  372 (459)
T KOG0288|consen  312 I--S-DVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRT-------------  372 (459)
T ss_pred             c--e-eeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccc-------------
Confidence            2  2 689999999999999998 66778877654 89999999999 8888889999999999998             


Q ss_pred             CCcccccccceeeccc----cceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          298 SPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                            .+....+...    ....+.+.|||++. ++++||.||.|+||++.+-.
T Consensus       373 ------~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  373 ------KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGK  420 (459)
T ss_pred             ------ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCce
Confidence                  5555555321    22378899999999 89999999999999997643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=5.6e-27  Score=200.06  Aligned_cols=253  Identities=17%  Similarity=0.269  Sum_probs=207.7

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceee-eeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWD-LSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      ..++.+.+|.-.. +..+....+.+|.+-|.. +++-+..+ +++.    |+.|..|.+|...         +..++.++
T Consensus        32 sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~----g~~D~~i~v~~~~---------~~~P~~~L   97 (745)
T KOG0301|consen   32 SRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVV----GGMDTTIIVFKLS---------QAEPLYTL   97 (745)
T ss_pred             CCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEe----ecccceEEEEecC---------CCCchhhh
Confidence            3467776665332 233333556778888887 88886444 4555    5899999999998         77899999


Q ss_pred             eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      .+|+..|.|+....++.  +++++.|.++++|.......       ...+|...|++++.-|++ .+++|+.|.+|++|.
T Consensus        98 kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~-------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk  167 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVY-------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK  167 (745)
T ss_pred             hccccceeeeecCCcCc--eEecccccceEEecchhhhc-------ccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence            99999999999888887  88899999999998873211       145788999999999987 799999999999998


Q ss_pred             cccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018697          197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      -  ++.+.++. +|   |+.+++-+++.  |++++.||.|++|++.  +..+.++.+|+..|.++...+++ ..++++++
T Consensus       168 ~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gE  239 (745)
T KOG0301|consen  168 G--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSD-GLIVSTGE  239 (745)
T ss_pred             C--Cchhhhhc-cchhheeeeEEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCC-CeEEEecC
Confidence            5  56777787 67   99999999975  8899999999999994  66899999999999999977777 89999999


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |++++||+..                     ++.+.+.-....|+++.+-++|.  +++|+.||.||||...+
T Consensus       240 DrtlriW~~~---------------------e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  240 DRTLRIWKKD---------------------ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CceEEEeecC---------------------ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecc
Confidence            9999999985                     45555554455799999999987  78888899999998764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=2.4e-27  Score=183.09  Aligned_cols=288  Identities=15%  Similarity=0.205  Sum_probs=210.5

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC-CCceEEEEeecCCcceEEEEEcccccCCCC-CCcceee-----e
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-DQRIFSTVFSTGESYGAAIWQIPELYGQLN-SPQLERI-----A  114 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~-----~  114 (351)
                      ..|.-+++.++.     .....|.+.|+++...+. ++++++    |+.||.|.|||++....... .-..+..     .
T Consensus        25 rRil~L~Ln~d~-----d~~r~HgGsvNsL~id~tegrymlS----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~   95 (397)
T KOG4283|consen   25 RRILSLQLNNDK-----DFVRPHGGSVNSLQIDLTEGRYMLS----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQ   95 (397)
T ss_pred             hhhheeeccCCc-----ceeccCCCccceeeeccccceEEee----cCCCccEEEEEeccccchhhccceeheeeecccc
Confidence            455556666653     233569999999999885 555555    68999999999984321100 0000111     1


Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC---CcEEEeecCCe
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAATCESS  191 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~  191 (351)
                      .-.+|+-.|..+.|-|-...++.+++-|.++++||.++.+....+...      ..|++-+++|-.   ..+++|..+-.
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCc
Confidence            124678899999999988775667789999999999975544333322      278888888853   35667778899


Q ss_pred             EEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--------------eCCCCc
Q 018697          192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--------------PGHTHW  254 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~  254 (351)
                      |++.|+.+|.....+. +|   |.++.|+|...++|++|+.||.|++||+|....+...+              ..|.+.
T Consensus       170 VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk  248 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK  248 (397)
T ss_pred             EEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence            9999999999988888 66   99999999999999999999999999999753333333              356678


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc--------------------cCC--------ccccccc
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV--------------------ESP--------NQRANSL  306 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~~~--------~~~~~~~  306 (351)
                      |+.++|..++ .++++.+.|..+++|+...+.....+.....                    ..|        ....+..
T Consensus       249 vngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~  327 (397)
T KOG4283|consen  249 VNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSF  327 (397)
T ss_pred             eeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceE
Confidence            9999999999 9999999999999999988644322111000                    000        0134566


Q ss_pred             ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +..+..|-..|.+.++.|+-+ ...++..|+.+..|-+...
T Consensus       328 ir~l~~h~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~p~l~  367 (397)
T KOG4283|consen  328 VRRLSTHLKRINCAAYRPDFE-QCFTGDMNGNIYMWSPALK  367 (397)
T ss_pred             EEeeecccceeeEEeecCchh-hhhccccCCcccccccccc
Confidence            777778888888888888877 6888999999999987443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3e-28  Score=183.84  Aligned_cols=201  Identities=19%  Similarity=0.315  Sum_probs=174.1

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      .+.|.--|..++|+.|..+|++    |+.+..+||||+..        ...+...+.+|.+.|..+.|....+. +++++
T Consensus        96 sf~hkhivk~~af~~ds~~llt----gg~ekllrvfdln~--------p~App~E~~ghtg~Ir~v~wc~eD~~-iLSSa  162 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDSNYLLT----GGQEKLLRVFDLNR--------PKAPPKEISGHTGGIRTVLWCHEDKC-ILSSA  162 (334)
T ss_pred             hhhhhheeeeEEecccchhhhc----cchHHHhhhhhccC--------CCCCchhhcCCCCcceeEEEeccCce-EEeec
Confidence            4678899999999999999998    58999999999983        23455678899999999999988874 77778


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK  219 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~  219 (351)
                      .|++|++||..++.....+....      +|+++..+++|++| +....+.|.+||..+-..+..+..+. |.+..++|+
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~  235 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK  235 (334)
T ss_pred             cCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccccccCC
Confidence            99999999999987776666544      89999999998854 55567889999999988888887555 999999999


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .. ++++|++|..++.||..+ +..+..+ ++|.++|.++.|+|+| ...++|+.||+|++|.+..
T Consensus       236 k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  236 KE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             Cc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence            96 899999999999999998 5556665 8999999999999999 9999999999999999876

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-26  Score=187.83  Aligned_cols=280  Identities=14%  Similarity=0.186  Sum_probs=200.4

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC-------CCceEEEEeecCCcceEEEEEcccccCCC---------
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-------DQRIFSTVFSTGESYGAAIWQIPELYGQL---------  105 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~---------  105 (351)
                      ..+.++-+.+....+....-+--+....|+.|...       |++++.    |.-|..|.|||+.-.....         
T Consensus       150 s~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~~  225 (463)
T KOG0270|consen  150 SYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSKA  225 (463)
T ss_pred             eEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEE----eccCceeEEeccccccccccceeechhh
Confidence            44455555555433332211112234457777432       335554    5789999999987321100         


Q ss_pred             ---CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-C
Q 018697          106 ---NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-V  181 (351)
Q Consensus       106 ---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  181 (351)
                         .....+.-..-.+|++.|.++.|+..-++++++++.|.+|++||+.+++....+.     .|...|.++.|+|.. .
T Consensus       226 sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~  300 (463)
T KOG0270|consen  226 SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPS  300 (463)
T ss_pred             hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-----hcCCceeEEEecCCCce
Confidence               0001111112347999999999999998866666999999999999876554433     245589999999975 4


Q ss_pred             cEEEeecCCeEEEEEcccCC-cCceeec-ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE
Q 018697          182 NAVAATCESSVQFWDLRSMG-KTNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (351)
Q Consensus       182 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  259 (351)
                      .|++|+.|++|.+.|.|... .-..+.. +.|..++|+|...+.++++..||+++-+|+|.+++++.+++.|..+|.+++
T Consensus       301 ~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~  380 (463)
T KOG0270|consen  301 VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS  380 (463)
T ss_pred             EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence            57889999999999999532 2223332 229999999999988999999999999999999899999999999999999


Q ss_pred             ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018697          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (351)
Q Consensus       260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  339 (351)
                      +++.-+.+++|++.|+.|++|++....                 ...+....-.-+...++++.|+-...++.||..+.+
T Consensus       381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~-----------------~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  381 VNIQTPGLLSTASTDKVVKLWKFDVDS-----------------PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             ecCCCCcceeeccccceEEEEeecCCC-----------------CcccccccccccceeecccCCCcceEEEecCccceE
Confidence            999988999999999999999998621                 111111111112367888899988889999999999


Q ss_pred             EEeecCcc
Q 018697          340 VVESVKPF  347 (351)
Q Consensus       340 ~vw~~~~~  347 (351)
                      +|||+-..
T Consensus       444 ~vwd~~~~  451 (463)
T KOG0270|consen  444 RVWDIFTN  451 (463)
T ss_pred             EEeecccC
Confidence            99998654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=9.4e-27  Score=196.96  Aligned_cols=290  Identities=17%  Similarity=0.227  Sum_probs=205.7

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe---EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (351)
                      .....+.|+++    .+++.|.+.+.....-.   ........|.+.|.++.|.|....|+++    +.|.++++||+. 
T Consensus        60 ~~n~eHiLava----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wdvk-  130 (720)
T KOG0321|consen   60 APNKEHILAVA----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWDVK-  130 (720)
T ss_pred             CCCccceEEEe----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeeeec-
Confidence            33345677775    46777777664432111   1124566899999999999944455554    789999999998 


Q ss_pred             ccCCCCCCcceeeee--eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--Cccc-----------------
Q 018697          101 LYGQLNSPQLERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQV-----------------  159 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~-----------------  159 (351)
                              +.+.+..  +.+|...|.+++|.|.++.++++++.||.|.|||++....  ....                 
T Consensus       131 --------~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  131 --------TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             --------cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence                    4444444  7899999999999999998788889999999999975330  0000                 


Q ss_pred             c---cccccCcccceee---eEECCCCCcEEEeec-CCeEEEEEcccCCcCceeec------------ce-eEEEEcCCC
Q 018697          160 Q---SKQSSGMLHYLSG---GAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH------------AH-VRNVDYDTK  219 (351)
Q Consensus       160 ~---~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~------------~~-v~~~~~~~~  219 (351)
                      .   ......+...+.+   +.+..|...|++++. |+.|+|||++..........            .+ +.++.....
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence            0   0001112223444   445567888998876 99999999997543322210            11 888888888


Q ss_pred             CCcEEEEecCCCeEEEEecccCCc-ceeEeeCCCCce--eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      |.+++|++ .|+.|++|+++.... ++..+.++...-  ..-..+|++ .++++|+.|....+|.+...           
T Consensus       283 Gt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~-----------  349 (720)
T KOG0321|consen  283 GTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP-----------  349 (720)
T ss_pred             CCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc-----------
Confidence            99666655 599999999987543 455555443221  122368999 99999999999999999872           


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR  350 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  350 (351)
                             ......+.+|...|++++|.|..-.-++++++|..+++|++...+.+
T Consensus       350 -------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  350 -------EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             -------cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence                   45666778999999999998865556889999999999999776554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.6e-27  Score=206.74  Aligned_cols=233  Identities=20%  Similarity=0.310  Sum_probs=196.6

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      +...+.+..|.  ..++++    +..+.+|++|+..         ....+.. +.+|.+.|.++++.. +..+++.++.|
T Consensus       207 ~~~~~~~~q~~--~~~~~~----~s~~~tl~~~~~~---------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D  270 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKS----GSDDSTLHLWDLN---------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD  270 (537)
T ss_pred             Ccchhhhheee--cCeEEe----cCCCceeEEeecc---------cceEEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence            55778888888  445666    4789999999988         5666666 999999999999987 44458888999


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~  219 (351)
                      .++++||..++.....+.     +|...+.++...+  ..+++|+.|.+|++|+++++..+..+. +|   |+++..+  
T Consensus       271 ~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--  340 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQ-----GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--  340 (537)
T ss_pred             CcEEeEecCCCcEEEEec-----CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--
Confidence            999999988765544433     5677888887653  567778899999999999999988888 35   9999998  


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      +. ++++|+.|++|++||.++ .++++.+.+|...|.++.+.+.  ..+++|+.|++|++||++.               
T Consensus       341 ~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~---------------  401 (537)
T KOG0274|consen  341 EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT---------------  401 (537)
T ss_pred             CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCc---------------
Confidence            44 899999999999999997 8899999999999999988875  6899999999999999998               


Q ss_pred             ccccc-ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          300 NQRAN-SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       300 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                          . +++.++.+|...|..+.+.  +. +|++++.|+.|++||..+..
T Consensus       402 ----~~~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  402 ----KRKCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ----hhhhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecccCc
Confidence                7 8999999999988777665  34 89999999999999987654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.2e-27  Score=184.56  Aligned_cols=211  Identities=12%  Similarity=0.191  Sum_probs=172.5

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC------C-------CCCcccccccccCcccceeeeEECCC
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC------S-------NKNAQVQSKQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~------~-------~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (351)
                      -..+..|++++.+.+|+|||. ++++++.|..|+|.|++.      .       .+..........+|..+|+++.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            345678999999999999999 355558899999999872      1       11111223345578889999999999


Q ss_pred             CCcEEEeecCCeEEEEEcccCCc---Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe---eCCC
Q 018697          180 DVNAVAATCESSVQFWDLRSMGK---TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---PGHT  252 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~  252 (351)
                      ...|++++.|++|+++|......   ...++..+ +.++.|+|.|. ++++|.+..++++||+.+ .++...-   ..|.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T-~QcfvsanPd~qht  261 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHT  261 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccc-eeEeeecCcccccc
Confidence            99999999999999999976433   33444455 99999999999 688899999999999997 4433322   3688


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cc-cceEEEEEeCCCCCceE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DY-EDSVYGLAWSSREPWIF  330 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~l  330 (351)
                      ..|+++.+++.+ .+.++++.||.|++||--+                   .+++.++. .| ...|.+..|..+++ ++
T Consensus       262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS-------------------~rCv~t~~~AH~gsevcSa~Ftkn~k-yi  320 (430)
T KOG0640|consen  262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVS-------------------NRCVRTIGNAHGGSEVCSAVFTKNGK-YI  320 (430)
T ss_pred             cceeEEEecCCc-cEEEEeccCCcEEeecccc-------------------HHHHHHHHhhcCCceeeeEEEccCCe-EE
Confidence            999999999999 9999999999999999988                   89998885 35 35799999999999 88


Q ss_pred             EEeeeCCeEEEeecCcc
Q 018697          331 ASLSYDGRVVVESVKPF  347 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~~  347 (351)
                      ++.|.|..+++|++.+.
T Consensus       321 LsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTG  337 (430)
T ss_pred             eecCCcceeeeeeecCC
Confidence            99999999999999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=199.12  Aligned_cols=244  Identities=14%  Similarity=0.197  Sum_probs=200.3

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEe
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSI  140 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~  140 (351)
                      .....+.+++.+|++++|++    |..-|+++||++.         ..+....+..|+.+|.|+.|+..  +..+++.++
T Consensus       457 d~r~G~R~~~vSp~gqhLAs----GDr~GnlrVy~Lq---------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas  523 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLAS----GDRGGNLRVYDLQ---------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS  523 (1080)
T ss_pred             CcccceEEEEECCCcceecc----cCccCceEEEEeh---------hhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence            34568899999999999988    5788999999998         66777888999999999999863  344444558


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC--CcEEEeecCCeEEEEEcccCCcCceeec-----ce--e
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEH-----AH--V  211 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~--v  211 (351)
                      .|.-|.|||+...-...    ....+|...|+++.|...|  ..+++++.|..|.+--.+.......+..     .+  +
T Consensus       524 rdRlIHV~Dv~rny~l~----qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  524 RDRLIHVYDVKRNYDLV----QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             CCceEEEEecccccchh----hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence            99999999998533332    2344778899999998777  6688888898775433322111222221     12  9


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      ..++..|..+ ++++++.|..|+|||+.. ++..+.|++   |++....+...|.| .|+++...|.++.++|+.+    
T Consensus       600 YDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s----  672 (1080)
T KOG1408|consen  600 YDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS----  672 (1080)
T ss_pred             EEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEecc----
Confidence            9999999998 899999999999999998 667888874   66778889999999 9999999999999999999    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                     ++++....+|...|+++.|.+|-+ .|++.+.||.|.||.++.
T Consensus       673 ---------------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  673 ---------------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ---------------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECch
Confidence                           999999999999999999999998 799999999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.6e-26  Score=175.76  Aligned_cols=272  Identities=16%  Similarity=0.257  Sum_probs=197.3

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEE
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVS  139 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~  139 (351)
                      .+|.+-|+++.|.+.|++++++    +.|.+|+|||...     ...++..-...+.|.+.|..+.|.+.  |+ +++++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~-----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~c   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTS-----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATC   79 (361)
T ss_pred             cCCcceeeeeeecccCceeeec----cCCCcEEEEeccC-----CCCceEEeeeEEecCCcEEEEEecCccccc-eEEEE
Confidence            4789999999999999999885    8999999999753     23467788889999999999999664  44 34444


Q ss_pred             ecCCcEEEEEcCCCCC----CcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCC------cCceee
Q 018697          140 IDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG------KTNSIE  207 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~------~~~~~~  207 (351)
                      +.|+++.||.-.....    ..-.......+....|+++.|.|.  |-.|++++.||.+|||+....-      ....++
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence            8999999998632111    111222233444568999999995  4567888999999999865432      222222


Q ss_pred             -----c--ce--eEEEEcCCCC--CcEEEEecCC-----CeEEEEecccCCc---ceeEeeCCCCceeEEEecCCCC---
Q 018697          208 -----H--AH--VRNVDYDTKK--KHLLVTAADE-----SGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYD---  265 (351)
Q Consensus       208 -----~--~~--v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~---  265 (351)
                           .  .+  ..|+.|+|..  +.+|++|+.+     +.+.||......+   .+.++.+|..+|+.++|.|.-.   
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                 1  11  7899998753  2378888876     5788998765442   4556779999999999999642   


Q ss_pred             CeEEEeeCCCeEEEEEcCCCCCCCCCCcc-cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          266 GFILSAGTDSTVNLWLVSTSNHDELPSES-LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      .+||+++.|| |+||.+......-...+. ......+..-+.+..+..|...|+.+.|+-.|. +|++.|.||.||+|..
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhh
Confidence            5789999999 999999853322111111 111111223456777889999999999999998 9999999999999986


Q ss_pred             C
Q 018697          345 K  345 (351)
Q Consensus       345 ~  345 (351)
                      .
T Consensus       318 n  318 (361)
T KOG2445|consen  318 N  318 (361)
T ss_pred             h
Confidence            4

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.2e-25  Score=187.26  Aligned_cols=264  Identities=12%  Similarity=0.126  Sum_probs=185.4

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.+.+|++....  . ...+..+ ..+..++|+|+++.++++   ++.++.|++||..         ..+....+..
T Consensus         8 ~~d~~v~~~d~~t~~--~-~~~~~~~-~~~~~l~~~~dg~~l~~~---~~~~~~v~~~d~~---------~~~~~~~~~~   71 (300)
T TIGR03866         8 EKDNTISVIDTATLE--V-TRTFPVG-QRPRGITLSKDGKLLYVC---ASDSDTIQVIDLA---------TGEVIGTLPS   71 (300)
T ss_pred             cCCCEEEEEECCCCc--e-EEEEECC-CCCCceEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEeccC
Confidence            457889998876532  2 2333434 447789999999887665   3678999999987         4455555544


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-eEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~  197 (351)
                      +.. +..++|+|+++.++++++.++.+++||+.+.........      ...+.+++|+|++..++++..++ .+.+||.
T Consensus        72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence            433 567899999985444446689999999986432222111      12467899999999998887664 5778899


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-----C--ceeEEEecCCCCCe-E
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-----H--WTWAVCCNPEYDGF-I  268 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~-l  268 (351)
                      ++++....+.... +..++|+|+++.+++++..++.|++||+++ .+.+..+..+.     .  ....++|+|++ .+ +
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~  222 (300)
T TIGR03866       145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDG-KTAF  222 (300)
T ss_pred             CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCC-CEEE
Confidence            8776655444334 778999999985556666799999999987 44555544221     1  23468899999 55 4


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE-eeeCCeEEEeecCcc
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS-LSYDGRVVVESVKPF  347 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~~  347 (351)
                      ++.+.++.+.+||.++                   ++.+..+. +...+.+++|+|+++ .|++ .+.++.|++||+.+.
T Consensus       223 ~~~~~~~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       223 VALGPANRVAVVDAKT-------------------YEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             EEcCCCCeEEEEECCC-------------------CcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCC
Confidence            4455677899999987                   56554443 334689999999999 5555 467999999999864


Q ss_pred             c
Q 018697          348 L  348 (351)
Q Consensus       348 ~  348 (351)
                      .
T Consensus       282 ~  282 (300)
T TIGR03866       282 K  282 (300)
T ss_pred             c
Confidence            4

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.8e-27  Score=190.97  Aligned_cols=266  Identities=15%  Similarity=0.207  Sum_probs=208.7

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  122 (351)
                      .+.+|.+.+..   ......--++.|.+++-+|.|.+|+++    +..+.|.+|.+.         ++..+..+..|-..
T Consensus        62 ~l~vw~i~k~~---~~~q~~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWels---------sG~LL~v~~aHYQ~  125 (476)
T KOG0646|consen   62 LLHVWEILKKD---QVVQYIVLPGPVHALASSNLGYFLLAG----TISGNLYLWELS---------SGILLNVLSAHYQS  125 (476)
T ss_pred             cccccccCchh---hhhhhcccccceeeeecCCCceEEEee----cccCcEEEEEec---------cccHHHHHHhhccc
Confidence            55555555432   222334457899999999999888873    588999999999         78999999999999


Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC---C-cccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEE
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK---N-AQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWD  196 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd  196 (351)
                      |+|+.|+.|+.+ +++++.||.|.+|.+...-.   . .........+|.-+|+++...+.  ..++++++.|.++++||
T Consensus       126 ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  126 ITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             eeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            999999999995 88889999999999763211   1 11122335678889999988764  45799999999999999


Q ss_pred             cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------------cceeEeeCCCC--ceeEE
Q 018697          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------APIQELPGHTH--WTWAV  258 (351)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~~  258 (351)
                      +..+..+.++..+. +.+++.+|-++ .++.|+++|.|.+.++....               ..+..+.+|.+  .|+|+
T Consensus       205 lS~g~LLlti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  205 LSLGVLLLTITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             eccceeeEEEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            99999988888666 99999999998 78899999999998875432               23556778888  99999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  338 (351)
                      +.+-|| .+|++|+.||.++|||+.+                   .++++++....++|+.+.+.|-.+..+..-.....
T Consensus       284 ais~Dg-tlLlSGd~dg~VcvWdi~S-------------------~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps  343 (476)
T KOG0646|consen  284 AISTDG-TLLLSGDEDGKVCVWDIYS-------------------KQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPS  343 (476)
T ss_pred             EEecCc-cEEEeeCCCCCEEEEecch-------------------HHHHHHHhhhccccceeEeeccccceecccccCcc
Confidence            999999 9999999999999999998                   88998887667889999986654433333333344


Q ss_pred             EEEeecCc
Q 018697          339 VVVESVKP  346 (351)
Q Consensus       339 v~vw~~~~  346 (351)
                      +-.|++..
T Consensus       344 ~~~~~lkr  351 (476)
T KOG0646|consen  344 LPNPHLKR  351 (476)
T ss_pred             CCchHhhc
Confidence            45555443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=201.62  Aligned_cols=242  Identities=15%  Similarity=0.247  Sum_probs=192.7

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCC----------------------------C-e-----E-----
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG----------------------------T-E-----L-----   56 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~----------------------------~-~-----~-----   56 (351)
                      ...|..+++++++.-++.|    ++|+.|++|.+-...                            . .     .     
T Consensus       267 ~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  267 KGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             CCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            4578889999999999876    589999999877600                            0 0     0     


Q ss_pred             ------------------EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           57 ------------------ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        57 ------------------~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                                        -...+.||.+.|.+|.||.++ +|+++    +-|.+|+||++.         ...++..| .
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSS----SMDKTVRLWh~~---------~~~CL~~F-~  407 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSS----SMDKTVRLWHPG---------RKECLKVF-S  407 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheecccccCC-eeEec----cccccEEeecCC---------CcceeeEE-e
Confidence                              002378999999999999855 67774    899999999998         56778877 7


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      |.+-|+||+|+|-....+++|+-|+.|+||++...+-....-      ...-|++++|.|+|++.++|+.+|.+++|+.+
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh------hhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            999999999999877778888999999999998532222211      22489999999999999999999999999998


Q ss_pred             cCCcCceeec---------ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC--ceeEEEecCCCCC
Q 018697          199 SMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDG  266 (351)
Q Consensus       199 ~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  266 (351)
                      ..+....+..         .+ |+.+.|.|.....+++.+.|..|||||.+. ..++..|+++..  .-....|+.+| .
T Consensus       482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dg-k  559 (712)
T KOG0283|consen  482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDG-K  559 (712)
T ss_pred             CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCC-C
Confidence            7665443321         12 999999987765677789999999999987 667888886543  23567899999 9


Q ss_pred             eEEEeeCCCeEEEEEcCC
Q 018697          267 FILSAGTDSTVNLWLVST  284 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~~~  284 (351)
                      +|++++.|..|++|+...
T Consensus       560 ~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  560 HIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEEEeecCceEEEEeCCC
Confidence            999999999999999743

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.4e-26  Score=185.91  Aligned_cols=255  Identities=16%  Similarity=0.212  Sum_probs=202.8

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC--C-CC-----Ccceeeeee-eccccceeEEEe
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ--L-NS-----PQLERIAAL-DAHVGKINCVLW  128 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~--~-~~-----~~~~~~~~~-~~h~~~v~~~~~  128 (351)
                      ...+..|.-.|.+++++|++++.+++    +.+++|.-|++......  . ..     ..+.+...- +.|...+.+++.
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV  210 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence            35566899999999999999999996    79999999998743211  0 00     011111112 378899999999


Q ss_pred             cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018697          129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (351)
Q Consensus       129 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  208 (351)
                      ++|+++ +++++.|..|.||+..+.+....     ..+|...|.+++|-.....+++++.|+.|++|+++....+.++. 
T Consensus       211 S~Dgky-latgg~d~~v~Iw~~~t~ehv~~-----~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-  283 (479)
T KOG0299|consen  211 SSDGKY-LATGGRDRHVQIWDCDTLEHVKV-----FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-  283 (479)
T ss_pred             cCCCcE-EEecCCCceEEEecCcccchhhc-----ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence            999995 66778899999999997554433     45788899999999888889999999999999999887777776 


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      +|   |..+....-.+ .+.+|+.|+++++|++..  .....+.+|.+.+-|++|-.+  ..+++|+.+|.|.+|++.. 
T Consensus       284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~K-  357 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLK-  357 (479)
T ss_pred             CCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecc-
Confidence            55   88888887777 677788999999999964  344566789999999999876  5899999999999999987 


Q ss_pred             CCCCCCCcccccCCcccccccceeec-c-----------ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYS-D-----------YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                                        .+++++.. +           +..+|++++..|... ++|+|+.+|.|++|.+.+..
T Consensus       358 ------------------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  358 ------------------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             ------------------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCc
Confidence                              45544432 1           223899999999877 99999999999999998753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-26  Score=177.91  Aligned_cols=274  Identities=12%  Similarity=0.156  Sum_probs=191.5

Q ss_pred             EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      +....+.+|.+.|++++|+.+|+.|+++    +.|++|+||++....+.    ..+.++.- ..-+..+.+.|.||.+.+
T Consensus        77 l~~~~LKgH~~~vt~~~FsSdGK~lat~----~~Dr~Ir~w~~~DF~~~----eHr~~R~n-ve~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSSDGKKLATI----SGDRSIRLWDVRDFENK----EHRCIRQN-VEYDHPTRVVFAPDCKSV  147 (420)
T ss_pred             hhhhhhhccCCceeeeEEcCCCceeEEE----eCCceEEEEecchhhhh----hhhHhhcc-ccCCCceEEEECCCcceE
Confidence            3345678999999999999999999997    58999999999731110    11111111 112346789999999975


Q ss_pred             EEEEecCCcEEEEEcCCCCCC---ccccc----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018697          136 KLVSIDEENIFLWSLDCSNKN---AQVQS----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~---~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  208 (351)
                      +++.-...++++|.+.....-   .....    .....|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+..
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            666666789999988643221   11110    0122345566677777788899999999999999999 888888875


Q ss_pred             ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          209 AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       209 ~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      ..  -+..+.+|+|+ ++++++....|++|.+--.+       ..+..+++|...|..++|+|+. ..++|.+.||++++
T Consensus       227 nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEE
Confidence            44  77889999999 78888888899999863211       2356788999999999999999 99999999999999


Q ss_pred             EEcCCCCCC-CCCC---------cccc-------cCCcc----------------cccccceee-ccccceEEEEEeCCC
Q 018697          280 WLVSTSNHD-ELPS---------ESLV-------ESPNQ----------------RANSLLNSY-SDYEDSVYGLAWSSR  325 (351)
Q Consensus       280 wd~~~~~~~-~~~~---------~~~~-------~~~~~----------------~~~~~~~~~-~~~~~~v~~~~~~~~  325 (351)
                      ||+...... +.+.         ....       .+|..                ..++....+ ..|...|.+++|+++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD  384 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence            998653211 1000         0000       11110                011111111 347788999999999


Q ss_pred             CCceEEEeeeCCeEEEee
Q 018697          326 EPWIFASLSYDGRVVVES  343 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~  343 (351)
                      |+ ++++++ |..+++..
T Consensus       385 g~-~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  385 GK-YIATCG-DRYVRVIR  400 (420)
T ss_pred             Cc-EEeeec-ceeeeeec
Confidence            99 788887 78888876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3e-26  Score=204.97  Aligned_cols=254  Identities=17%  Similarity=0.263  Sum_probs=200.2

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecC--CcceEEEEEcccccCCCCCC---cceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQLNSP---QLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ++..|.+|..+|++..++++    |  .|+.++||+.+.........   -.+.+.+...|.+.|.|+.|+|||++ +++
T Consensus        12 ~~~~IfSIdv~pdg~~~aTg----Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAs   86 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATG----GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY-LAS   86 (942)
T ss_pred             CCeeEEEEEecCCceeEecC----CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe-Eee
Confidence            34679999999999888874    6  88899999987543221111   23556778899999999999999995 666


Q ss_pred             EecCCcEEEEEcCCCCCCcccc--------------cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQ--------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  204 (351)
                      |++|+.|.||+... .......              .....+|...|.+++|+|++.++++++.|++|.+|+.++.+.+.
T Consensus        87 GSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   87 GSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            68999999999883 1111111              11245688899999999999999999999999999999997777


Q ss_pred             eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC------CceeEEEecCCCCCeEEEeeC--
Q 018697          205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT------HWTWAVCCNPEYDGFILSAGT--  273 (351)
Q Consensus       205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~--  273 (351)
                      .+. +|   |..+.|.|-|+ +|++-+.|++|++|++.. -...+.+..+.      .....+.|+||| .+|++.-.  
T Consensus       166 vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n  241 (942)
T KOG0973|consen  166 VLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVN  241 (942)
T ss_pred             eee-cccccccceEECCccC-eeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCc-Ceecchhhcc
Confidence            777 66   99999999999 799999999999999776 33445544332      357889999999 89987643  


Q ss_pred             --CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC--------CC--------ceEEEeee
Q 018697          274 --DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--------EP--------WIFASLSY  335 (351)
Q Consensus       274 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~--------~~l~s~~~  335 (351)
                        -.++.|.+..+                   ++.-..+-+|..++..++|+|.        |.        .++|+|+.
T Consensus       242 ~~~~~~~IieR~t-------------------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  242 GGKSTIAIIERGT-------------------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             CCcceeEEEecCC-------------------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence              34788888887                   8888889999999999999981        11        16889999


Q ss_pred             CCeEEEeecCc
Q 018697          336 DGRVVVESVKP  346 (351)
Q Consensus       336 dg~v~vw~~~~  346 (351)
                      |++|-||....
T Consensus       303 DrSlSVW~T~~  313 (942)
T KOG0973|consen  303 DRSLSVWNTAL  313 (942)
T ss_pred             CccEEEEecCC
Confidence            99999998754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=4.2e-26  Score=173.84  Aligned_cols=208  Identities=14%  Similarity=0.223  Sum_probs=179.6

Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+++|+.+++.+.++.+|. ++++++.|.+..+|-..++++...     ..+|+..|+++..+.+.+.+++|+.|.++++
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-----y~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-----YDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-----ecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            4678999999999999999 577779999999998876655443     4478889999999999999999999999999


Q ss_pred             EEcccCCcCceeecce-eEEEEcCCCCCcEEEEecC-----CCeEEEEecccC------CcceeEeeCCCCceeEEEecC
Q 018697          195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD-----ESGIHLWDLRML------KAPIQELPGHTHWTWAVCCNP  262 (351)
Q Consensus       195 wd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~  262 (351)
                      ||.++|+++..++.+. |..+.|+++|. +++...+     .+.|.++|++..      ..|+..+..+.+.++.+-|.|
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9999999999998666 99999999998 4444433     468999999842      346788888899999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      .+ .+|++|..||.|.+||.+++                  .+.+.....|+..|+.+.++|+.. ++++++.|.+-++|
T Consensus       158 l~-~~ii~Ghe~G~is~~da~~g------------------~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  158 LG-ETIIAGHEDGSISIYDARTG------------------KELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV  217 (327)
T ss_pred             cC-CEEEEecCCCcEEEEEcccC------------------ceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence            99 99999999999999999981                  355666678999999999999998 89999999999999


Q ss_pred             ecCcccc
Q 018697          343 SVKPFLS  349 (351)
Q Consensus       343 ~~~~~~~  349 (351)
                      |+.+...
T Consensus       218 D~~tl~v  224 (327)
T KOG0643|consen  218 DVRTLEV  224 (327)
T ss_pred             eccceee
Confidence            9987654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-26  Score=176.42  Aligned_cols=281  Identities=16%  Similarity=0.273  Sum_probs=214.5

Q ss_pred             EEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc------cccC--
Q 018697           32 LTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP------ELYG--  103 (351)
Q Consensus        32 ~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~------~~~~--  103 (351)
                      ++|+.+.  +..-.+|.+....   ......+|.+.|++|.|++.+..++++    +.|++..||...      ....  
T Consensus       162 i~gtASA--DhTA~iWs~Esg~---CL~~Y~GH~GSVNsikfh~s~~L~lTa----SGD~taHIW~~av~~~vP~~~a~~  232 (481)
T KOG0300|consen  162 ICGTASA--DHTARIWSLESGA---CLATYTGHTGSVNSIKFHNSGLLLLTA----SGDETAHIWKAAVNWEVPSNNAPS  232 (481)
T ss_pred             ceeeccc--ccceeEEeecccc---ceeeecccccceeeEEeccccceEEEc----cCCcchHHHHHhhcCcCCCCCCCC
Confidence            5565433  3455566666543   446678999999999999988777664    789999999832      1100  


Q ss_pred             ----------------------CCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc
Q 018697          104 ----------------------QLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ  160 (351)
Q Consensus       104 ----------------------~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~  160 (351)
                                            ..+.+. ..++..+.+|.+.|.+..|...++. +++++.|.+-.+||++++....   
T Consensus       233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~---  308 (481)
T KOG0300|consen  233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVN---  308 (481)
T ss_pred             CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceec---
Confidence                                  001111 2456778999999999999999885 8888999999999999865433   


Q ss_pred             cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          161 SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                        ...+|...++.++-+|..+.+++++.|.+.++||.+..-. +..|+ +|   |+++.|..+.+  +++|++|.+|++|
T Consensus       309 --~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  309 --ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKVW  383 (481)
T ss_pred             --cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEEe
Confidence              2346777899999999999999999999999999995433 33444 67   99999998875  8999999999999


Q ss_pred             ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce
Q 018697          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS  316 (351)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (351)
                      |+++...++.++. ..++++.++.+..+ .+++.--.+..|++||+.-...               ..-+...-++|...
T Consensus       384 dLrNMRsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rl---------------aRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  384 DLRNMRSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRL---------------ARLPRTSRQGHRRM  446 (481)
T ss_pred             eeccccCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcc---------------ccCCccccccccee
Confidence            9999888898887 47889999999877 8888888889999999985100               01122234689999


Q ss_pred             EEEEEeCCCCC-ceEEEeeeCCeEEEeecCcc
Q 018697          317 VYGLAWSSREP-WIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       317 v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |.+++|..+.+ .-|++++.|..+.-|++...
T Consensus       447 V~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  447 VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eeeeeccccCcccccccccccceeeeeEeccc
Confidence            99999975432 13789999999999998753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1e-25  Score=183.77  Aligned_cols=244  Identities=19%  Similarity=0.286  Sum_probs=193.7

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      .+|...|.+++.++|+++|++    |+.|..|.||+..         +.+.+..+.+|.+.|.+++|-..... +++++.
T Consensus       199 ~~h~keil~~avS~Dgkylat----gg~d~~v~Iw~~~---------t~ehv~~~~ghr~~V~~L~fr~gt~~-lys~s~  264 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLAT----GGRDRHVQIWDCD---------TLEHVKVFKGHRGAVSSLAFRKGTSE-LYSASA  264 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEe----cCCCceEEEecCc---------ccchhhcccccccceeeeeeecCccc-eeeeec
Confidence            389999999999999999988    5899999999998         78899999999999999999766554 788899


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~  218 (351)
                      |..|++|+++.....     ....+|...|.++.-..-++.+-+|+.|+++++|++..... ..+. ++   +.|++|-.
T Consensus       265 Drsvkvw~~~~~s~v-----etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-g~~~sidcv~~In  337 (479)
T KOG0299|consen  265 DRSVKVWSIDQLSYV-----ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-GGEGSIDCVAFIN  337 (479)
T ss_pred             CCceEEEehhHhHHH-----HHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-CCCCCeeeEEEec
Confidence            999999999843222     23347788999998877777677777999999999954332 2333 33   99999987


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEee-CC-----------CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP-GH-----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  286 (351)
                      +.  -+++|+.+|.|.+|++-+ ++|+.+.. .|           ..+|++++..|.. .++++|+.+|.|++|-+..+.
T Consensus       338 ~~--HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  338 DE--HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             cc--ceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc
Confidence            76  489999999999999987 66666543 22           2389999999988 999999999999999998721


Q ss_pred             CCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .               .-.++..+. -.+-|++++|+++|.++++..+....+--|-...
T Consensus       414 r---------------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  414 R---------------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             c---------------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence            1               134555554 4567999999999997888888777776665543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=182.43  Aligned_cols=287  Identities=11%  Similarity=0.128  Sum_probs=224.4

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ..+..+.++|....++++    +.++.+++++++...++.+ ..+.--..+|.+++|.|+|...+.+   ++.-..+..|
T Consensus       214 ~~I~sv~FHp~~plllva----G~d~~lrifqvDGk~N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~---s~rrky~ysy  285 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVA----GLDGTLRIFQVDGKVNPKL-QSIHLEKFPIQKAEFAPNGHSVIFT---SGRRKYLYSY  285 (514)
T ss_pred             CCceEEEecCCCceEEEe----cCCCcEEEEEecCccChhh-eeeeeccCccceeeecCCCceEEEe---cccceEEEEe
Confidence            467788899998888876    4689999999998777644 4555567899999999999944443   4788899999


Q ss_pred             EcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |+.+       .....+....++. ..+.....+++++. ++..+..|.|.+.-..++.....+....      .|.++.
T Consensus       286 Dle~-------ak~~k~~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~~  351 (514)
T KOG2055|consen  286 DLET-------AKVTKLKPPYGVEEKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDFT  351 (514)
T ss_pred             eccc-------cccccccCCCCcccchhheeEecCCCCe-EEEcccCceEEeehhhhhhhhheeeecc------EEeeEE
Confidence            9983       2344444455554 45677788999994 5555888999999888765554444332      899999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc-----CCcceeE
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM-----LKAPIQE  247 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~  247 (351)
                      |+.+++.|++.+.+|.|.+||++...++..+....   -++++.++++. +||+|+..|.|.|||..+     ..+|+..
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~  430 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKT  430 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhh
Confidence            99999999999999999999999998888887444   67888889998 899999999999999654     1357777


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc---ccceEEEEEe
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAW  322 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~  322 (351)
                      +..-...|++++|+|+. .+||.++.  +..+++-.+.+                   ......+..   .-..|++++|
T Consensus       431 ~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS-------------------~TVFsNfP~~n~~vg~vtc~aF  490 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPS-------------------CTVFSNFPTSNTKVGHVTCMAF  490 (514)
T ss_pred             hhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccc-------------------eeeeccCCCCCCcccceEEEEe
Confidence            77778899999999999 88887765  66889888776                   333333322   2235899999


Q ss_pred             CCCCCceEEEeeeCCeEEEeecCcc
Q 018697          323 SSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +|.+. +||.|..+|.|.+|.+..|
T Consensus       491 SP~sG-~lAvGNe~grv~l~kL~hy  514 (514)
T KOG2055|consen  491 SPNSG-YLAVGNEAGRVHLFKLHHY  514 (514)
T ss_pred             cCCCc-eEEeecCCCceeeEeeccC
Confidence            99988 8999999999999998643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-25  Score=172.60  Aligned_cols=218  Identities=19%  Similarity=0.312  Sum_probs=180.6

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC--ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      +.+..|+++++....   ....+..|.+.|+++.|.+.-.  .|+++    +.||.|.+|+..         .+..+..+
T Consensus        60 ssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~----sdDG~i~iw~~~---------~W~~~~sl  123 (362)
T KOG0294|consen   60 SSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSG----SDDGHIIIWRVG---------SWELLKSL  123 (362)
T ss_pred             CCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeee----cCCCcEEEEEcC---------CeEEeeee
Confidence            467889999887643   3456678999999999998765  78885    799999999998         88999999


Q ss_pred             eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      ++|.+.|+.++.+|.++ +.++-+.|+.++.||+-.+..........      ....+.|+|.|.+++.+..+ .|-+|.
T Consensus       124 K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~-~i~i~q  195 (362)
T KOG0294|consen  124 KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRN-KIDIYQ  195 (362)
T ss_pred             cccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEecc-EEEEEe
Confidence            99999999999999999 35555999999999998765443333322      44559999999988887755 588999


Q ss_pred             cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEe--cCCCCCeEEEeeC
Q 018697          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGT  273 (351)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~  273 (351)
                      +.+......+..+. +.|+.|...+  .+++|.+|+.|++||... ..+...+.+|...|..+.+  .|++ .+|+|++.
T Consensus       196 ~d~A~v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS  271 (362)
T KOG0294|consen  196 LDNASVFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASS  271 (362)
T ss_pred             cccHhHhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEecc
Confidence            99877776666444 7788887655  588899999999999987 7789999999999999984  5677 89999999


Q ss_pred             CCeEEEEEcCC
Q 018697          274 DSTVNLWLVST  284 (351)
Q Consensus       274 dg~i~iwd~~~  284 (351)
                      ||.|++||++.
T Consensus       272 DG~I~vWd~~~  282 (362)
T KOG0294|consen  272 DGFIKVWDIDM  282 (362)
T ss_pred             CceEEEEEccc
Confidence            99999999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-25  Score=190.15  Aligned_cols=238  Identities=18%  Similarity=0.323  Sum_probs=192.4

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeec-CCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFS-HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ..++.+.+++++.-|++|+    .++.+.+|+......   ...+.+ |...|-+++|.   ..+++.   |+.++.|..
T Consensus       218 ~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~---~~~~~~~h~~rvg~laW~---~~~lss---Gsr~~~I~~  284 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKK---TRTLRGSHASRVGSLAWN---SSVLSS---GSRDGKILN  284 (484)
T ss_pred             CceEEEEECCCCCEEEEee----cCCeEEEEehhhccc---cccccCCcCceeEEEecc---CceEEE---ecCCCcEEE
Confidence            4566777888999999997    578999999887543   344555 99999999998   344444   689999999


Q ss_pred             EEcccccCCCCCCcceee-eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|+..         .+.. ..+.+|...|..++|++++.+ ++.++.|+.+.|||.........+     ..|...|.++
T Consensus       285 ~dvR~---------~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aAVKA~  349 (484)
T KOG0305|consen  285 HDVRI---------SQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTF-----TEHTAAVKAL  349 (484)
T ss_pred             EEEec---------chhhhhhhhcccceeeeeEECCCCCe-eccCCCccceEeccCCCccccEEE-----eccceeeeEe
Confidence            99983         2222 248899999999999999994 555589999999999543333222     3577799999


Q ss_pred             EECCCCCc-EEEee--cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEee
Q 018697          175 AWDPHDVN-AVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       175 ~~~~~~~~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +|+|-..- |++|+  .|+.|++||..++..+..+..+. |.++.|++..+.++.+ |..+..|.||+..+ .+.+..+.
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~  428 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELL  428 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence            99997655 55543  69999999999999999888666 9999999999755544 44677999999998 56788999


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +|...|..++++|+| ..+++|+.|.++++|++-.
T Consensus       429 gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  429 GHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence            999999999999999 9999999999999999976

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.4e-27  Score=203.17  Aligned_cols=234  Identities=18%  Similarity=0.301  Sum_probs=199.3

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+..|...|.++..-...+.++.    ||.|..+.+|.+.         ....+..+.+|..+|.++.|+++.. ++.++
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~----Gg~~~k~~L~~i~---------kp~~i~S~~~hespIeSl~f~~~E~-Llaag   88 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVT----GGEDEKVNLWAIG---------KPNAITSLTGHESPIESLTFDTSER-LLAAG   88 (825)
T ss_pred             hhhhhhhhhceeeeeccceeecc----CCCceeecccccc---------CCchhheeeccCCcceeeecCcchh-hhccc
Confidence            34568888888888555555555    5899999999988         4566667899999999999999887 46667


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEc
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY  216 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~  216 (351)
                      +.+|+|++||+.......     ...+|...+..+.|+|.+.+.+.++.|..+++||++...+...+.. |   +.++.|
T Consensus        89 sasgtiK~wDleeAk~vr-----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~l  162 (825)
T KOG0267|consen   89 SASGTIKVWDLEEAKIVR-----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRL  162 (825)
T ss_pred             ccCCceeeeehhhhhhhh-----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEee
Confidence            889999999999644333     3346777999999999999999999999999999998778888874 6   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      +|+|+ +++.|++|..++|||+.. ++.+..|..|+..+..+.|+|.. .++++|+.|+++++||+++            
T Consensus       163 sP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet------------  227 (825)
T KOG0267|consen  163 SPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET------------  227 (825)
T ss_pred             cCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccce------------
Confidence            99999 899999999999999987 77899999999999999999998 9999999999999999998            


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                             .+.+...+.....|.+++|+|++. .+++|..+
T Consensus       228 -------fe~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~  259 (825)
T KOG0267|consen  228 -------FEVISSGKPETDGVRSLAFNPDGK-IVLSGEQI  259 (825)
T ss_pred             -------eEEeeccCCccCCceeeeecCCce-eeecCchh
Confidence                   677777777778899999999998 66666543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=179.17  Aligned_cols=212  Identities=16%  Similarity=0.293  Sum_probs=167.8

Q ss_pred             eeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCC-------cc----cccccccCcccceeeeEECCCCC-c
Q 018697          116 LDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKN-------AQ----VQSKQSSGMLHYLSGGAWDPHDV-N  182 (351)
Q Consensus       116 ~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~-------~~----~~~~~~~~~~~~v~~~~~~~~~~-~  182 (351)
                      .-.|.+.+..+.-++-++..++++ +..|.|+||++...-..       ..    .......+|...-++++|+|-.. .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            346788888888888876657777 88899999998632110       00    00112346777889999999433 3


Q ss_pred             EEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC-CcceeEeeCCCCce
Q 018697          183 AVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWT  255 (351)
Q Consensus       183 l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v  255 (351)
                      |++|..-+.|++|...++.-.   ..+. +|   |..++|+|....+|++|+-||+|+|||+|.. +++....+.|.+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            777777889999998876422   1222 34   9999999999889999999999999999974 22334447899999


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      +-|.|+... .+||+|+.||+++|||++....                ++++..|+.|..+|++|.|+|.....|+++|.
T Consensus       306 NVISWnr~~-~lLasG~DdGt~~iwDLR~~~~----------------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  306 NVISWNRRE-PLLASGGDDGTLSIWDLRQFKS----------------GQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             eeEEccCCc-ceeeecCCCceEEEEEhhhccC----------------CCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            999999998 6999999999999999997432                68899999999999999999988779999999


Q ss_pred             CCeEEEeecC
Q 018697          336 DGRVVVESVK  345 (351)
Q Consensus       336 dg~v~vw~~~  345 (351)
                      |..|.+||+.
T Consensus       369 D~QitiWDls  378 (440)
T KOG0302|consen  369 DNQITIWDLS  378 (440)
T ss_pred             CCcEEEEEee
Confidence            9999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-24  Score=163.79  Aligned_cols=239  Identities=18%  Similarity=0.330  Sum_probs=186.4

Q ss_pred             CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC-C-CCCceEEEEeecCCcceEEEEEcccccCC
Q 018697           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-P-FDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (351)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~-~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (351)
                      .+.|++..    ..++.|+++...+.+.......+.+|.++|+.++|- | .|..|+++    +.|+.|.||+-+     
T Consensus        22 ygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----sYDgkVIiWke~-----   88 (299)
T KOG1332|consen   22 YGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----SYDGKVIIWKEE-----   88 (299)
T ss_pred             hcceeeee----cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe----ecCceEEEEecC-----
Confidence            45566554    468999999999987766778999999999999994 5 45555553    899999999977     


Q ss_pred             CCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC---C
Q 018697          105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH---D  180 (351)
Q Consensus       105 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  180 (351)
                        .+..........|...|++++|.|.+..+++++ +.||.|.|.+.+.....  ........|.-.|++++|.|-   |
T Consensus        89 --~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   89 --NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             --CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcCCCc
Confidence              345667777889999999999999987767776 88999999999865221  122223356778999999986   3


Q ss_pred             -----------CcEEEeecCCeEEEEEcccCCcC--ceeecce---eEEEEcCCCC---CcEEEEecCCCeEEEEecccC
Q 018697          181 -----------VNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKK---KHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       181 -----------~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~---v~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~  241 (351)
                                 +.|++|+.|+.|+||+..+++-.  ..+. +|   |+.++|.|.-   +..+++++.||++.||-.+..
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence                       45999999999999999886422  2233 56   9999999975   347999999999999988743


Q ss_pred             Ccc--eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          242 KAP--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       242 ~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+  ...++.....+..+.|++.| ++|+.++.|+.+.+|.-..
T Consensus       244 ~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  244 YEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCC
Confidence            222  23344456789999999999 9999999999999997765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=2.1e-24  Score=176.08  Aligned_cols=259  Identities=15%  Similarity=0.199  Sum_probs=193.9

Q ss_pred             EeeecCCcceeeeeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ....-+.+.|++++|+|... .++++   |..-|.|-+||+...     .+...-+..+..|.++|.++.|+|.+...++
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~---GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAV---GDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEE---ccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhhee
Confidence            34556889999999999877 66666   688899999999521     1233456677899999999999999877788


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.||+|++-|++.... ..+....  .....+.++.|+.+...++++..=|.+.+||++++........-|   |.++
T Consensus       252 ssSyDGtiR~~D~~~~i~-e~v~s~~--~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNIS-EEVLSLD--TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV  328 (498)
T ss_pred             eeccCceeeeeeecchhh-HHHhhcC--ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence            889999999999985322 2222211  122367788899888889998887899999999876532222233   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      +++|..++++++++.|++++|||+|....   |+.....|...|.++.|+|.+ ..|+|.+.|..|+|||..-.+..   
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~---  404 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAK---  404 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeeccccccc---
Confidence            99999999999999999999999997432   233444699999999999999 55999999999999999521110   


Q ss_pred             CcccccCCcccccccceeecc---ccc--eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          292 SESLVESPNQRANSLLNSYSD---YED--SVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                  .++..++..   +..  ......|.|+.. +++.|-.-..|-|+|-.
T Consensus       405 ------------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  405 ------------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             ------------CCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCC
Confidence                        333333321   111  234567999888 89999888888888865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-26  Score=199.01  Aligned_cols=216  Identities=19%  Similarity=0.387  Sum_probs=186.6

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ..+..+++|+..               .+..|...+.++..-..++ .++.++.|..+-+|.+........     +.+|
T Consensus        11 ~~~t~Lr~~~~~---------------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-----~~~h   69 (825)
T KOG0267|consen   11 KRATKLRVWDTR---------------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-----LTGH   69 (825)
T ss_pred             eeeeccccccch---------------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-----eecc
Confidence            345567788765               2346888888888744555 366668888888999886544432     4478


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      ..+|.++.|+++...|++|+.+|+|++||++..+.++++. +|   +.++.|+|.+. +++.|+.|+.+.+||.+. ..+
T Consensus        70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc  146 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGC  146 (825)
T ss_pred             CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc-cCc
Confidence            8899999999999999999999999999999999888887 55   89999999998 679999999999999997 568


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      .+.+.+|...+..+.|+|+| +++++++.|.+++|||...                   ++.+..|+.|+..+..+.|+|
T Consensus       147 ~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~a-------------------gk~~~ef~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTA-------------------GKLSKEFKSHEGKVQSLEFHP  206 (825)
T ss_pred             eeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccc-------------------cccccccccccccccccccCc
Confidence            99999999999999999999 9999999999999999998                   999999999999999999999


Q ss_pred             CCCceEEEeeeCCeEEEeecCccc
Q 018697          325 REPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      ..- ++++|+.|++|++||++++.
T Consensus       207 ~e~-Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  207 LEV-LLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             hhh-hhccCCCCceeeeeccceeE
Confidence            876 89999999999999999654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.1e-23  Score=180.13  Aligned_cols=283  Identities=21%  Similarity=0.326  Sum_probs=200.1

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC--ceEEEEeecCCcceEEEEEcccccCCC------------C
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQL------------N  106 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~------------~  106 (351)
                      +..+.+.... ..+......+.||.+.|.+++|...+.  .+++.   ++.|..||||.+.......            +
T Consensus       168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS---~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~  243 (764)
T KOG1063|consen  168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLAS---SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN  243 (764)
T ss_pred             ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEe---cCCceEEEEEEEEecCCccccccccccccccC
Confidence            3444444444 223445577889999999999987654  44443   6999999999986432110            1


Q ss_pred             CCcceeee----------eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeee
Q 018697          107 SPQLERIA----------ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGG  174 (351)
Q Consensus       107 ~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~  174 (351)
                      .+......          .+.+|++-|.++.|+|.+.. +++++.|.++.+|...+.....  ........+.....++.
T Consensus       244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~-LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~  322 (764)
T KOG1063|consen  244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD-LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG  322 (764)
T ss_pred             CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh-heecccCcceEEEecCCccceEEEEEEeecccccccceeeE
Confidence            11111121          23489999999999999964 7788889999999987542221  22222222334468889


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCe-----------------
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESG-----------------  232 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-----------------  232 (351)
                      .|+|+++.+++-+..|..++|-.....  .......+|   |.+++|+|.|. +|++.+.|-+                 
T Consensus       323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEia  401 (764)
T KOG1063|consen  323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIA  401 (764)
T ss_pred             EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeec
Confidence            999999999999999999999832211  112222355   88888888888 5666665544                 


Q ss_pred             --------------------------------------------------------------------------------
Q 018697          233 --------------------------------------------------------------------------------  232 (351)
Q Consensus       233 --------------------------------------------------------------------------------  232 (351)
                                                                                                      
T Consensus       402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~  481 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT  481 (764)
T ss_pred             ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------------------EEEEeccc
Q 018697          233 ------------------------------------------------------------------------IHLWDLRM  240 (351)
Q Consensus       233 ------------------------------------------------------------------------i~i~d~~~  240 (351)
                                                                                              |++|+..+
T Consensus       482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~  561 (764)
T KOG1063|consen  482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN  561 (764)
T ss_pred             ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence                                                                                    56666554


Q ss_pred             CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                       -...+.+.+|.-.|+.++|+|+| ++|++.+.|.++.+|........               .......+.|+.-|++.
T Consensus       562 -W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~---------------e~~fa~~k~HtRIIWdc  624 (764)
T KOG1063|consen  562 -WLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD---------------EFRFACLKAHTRIIWDC  624 (764)
T ss_pred             -hhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch---------------hhhhccccccceEEEEc
Confidence             23456778899999999999999 99999999999999998652111               11133367899999999


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          321 AWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +|+|++. +++|+|.|.+|++|..++.
T Consensus       625 sW~pde~-~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  625 SWSPDEK-YFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccCcccc-eeEEecCCceEEEEeccCc
Confidence            9999998 7999999999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.7e-23  Score=181.17  Aligned_cols=314  Identities=11%  Similarity=0.157  Sum_probs=220.3

Q ss_pred             eeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEee
Q 018697            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      .+|..+.-.--|+.+.-+|.-..+++|.    .+|+|.+.++.-+.-    ...+.|. +.|++++|..||..++++   
T Consensus       194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dki----l~sFk~d~g~VtslSFrtDG~p~las---  262 (910)
T KOG1539|consen  194 VVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKI----LMSFKQDWGRVTSLSFRTDGNPLLAS---  262 (910)
T ss_pred             EEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcE----EEEEEccccceeEEEeccCCCeeEEe---
Confidence            3454444334466666777777788875    579999999887642    2223464 999999999999998887   


Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      ++..|.+.+||++         ..+.+..+ ..|.+.|....|.|..+ ++++++.|+.+++|=.+++....+++. ...
T Consensus       263 ~~~~G~m~~wDLe---------~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~  331 (910)
T KOG1539|consen  263 GRSNGDMAFWDLE---------KKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLR-SRG  331 (910)
T ss_pred             ccCCceEEEEEcC---------CCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchhee-ecc
Confidence            5778999999998         44444444 47889999999999887 455668899988887665443322222 234


Q ss_pred             CcccceeeeEEC-CCCCcEEEeecCCeE----------------------------------------------------
Q 018697          166 GMLHYLSGGAWD-PHDVNAVAATCESSV----------------------------------------------------  192 (351)
Q Consensus       166 ~~~~~v~~~~~~-~~~~~l~~~~~d~~i----------------------------------------------------  192 (351)
                      ||..+..++.|. .++..+++++.|+++                                                    
T Consensus       332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W  411 (910)
T KOG1539|consen  332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW  411 (910)
T ss_pred             CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence            566666666664 344445555555544                                                    


Q ss_pred             -------------EEEEcccCCc-Cceeecc-----e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe---
Q 018697          193 -------------QFWDLRSMGK-TNSIEHA-----H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---  248 (351)
Q Consensus       193 -------------~iwd~~~~~~-~~~~~~~-----~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---  248 (351)
                                   +.|+.++... ...+.+.     .  +.+++.++.|+ +.+.|...|.|-+|++++ +.....+   
T Consensus       412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQS-Gi~r~sf~~~  489 (910)
T KOG1539|consen  412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQS-GIHRKSFGDS  489 (910)
T ss_pred             cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEccc-CeeecccccC
Confidence                         4455544332 1222211     1  78899999998 788899999999999997 6556666   


Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC------CC-------------cccccC---Cccccccc
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL------PS-------------ESLVES---PNQRANSL  306 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~-------------~~~~~~---~~~~~~~~  306 (351)
                      ..|..+|++++....+ +.+++++.+|-+++||.........      ..             ...+..   -+....+.
T Consensus       490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            4799999999999988 9999999999999999987531100      00             000000   00022345


Q ss_pred             ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++.+.+|.+.|++++|||||+ -|++++.|++||+||+++.
T Consensus       569 vR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             hHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc
Confidence            667789999999999999999 5889999999999999863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.5e-24  Score=183.97  Aligned_cols=240  Identities=16%  Similarity=0.242  Sum_probs=196.5

Q ss_pred             EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeE-EEecCCCCCc
Q 018697           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHD  135 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~  135 (351)
                      +...+.+|...|..+++.+.. .+++    ++.|+++++|+-..       ........+.+|.+-|.+ +++.+..+..
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s----~sRd~t~~vw~~~~-------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~   73 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIIS----GSRDGTVKVWAKKG-------KQYLETHAFEGPKGFIANSICYAESDKGR   73 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEee----cCCCCceeeeeccC-------cccccceecccCcceeeccceeccccCcc
Confidence            346678999999999887644 5555    48999999999651       234444567788888877 8888755544


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~  212 (351)
                      ++.++.|..|.+|.+........     ..+|...|.+++...++. +++|+.|.++++|-...  +...++ +|   |.
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~-----LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~-gH~asVW  144 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYT-----LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ-GHTASVW  144 (745)
T ss_pred             eEeecccceEEEEecCCCCchhh-----hhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC-Ccchhee
Confidence            88889999999999986544333     336788999999877666 99999999999998653  444555 66   99


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      .++.-|++  .++||+.|.+|++|.-   ++.+++|.+|..-|..+++-+++  .|++++.||.|++|++.         
T Consensus       145 Av~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~---------  208 (745)
T KOG0301|consen  145 AVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD---------  208 (745)
T ss_pred             eeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEecc---------
Confidence            99999988  5899999999999995   45789999999999999999874  68999999999999994         


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                 ++++..+.+|++-|.+++..++++ +++++++|+++++|+..
T Consensus       209 -----------ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  209 -----------GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -----------CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence                       789999999999999999766666 89999999999999976

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=177.63  Aligned_cols=285  Identities=14%  Similarity=0.198  Sum_probs=224.7

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      .+.+.+++.+....++++|.    .++.|.+|++..  +......+.+++ ..|.+++|++ +.+|++.    +.+|.|.
T Consensus        25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~--~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~----g~sg~i~   93 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSN--NWFLEPVIHGPEDRSIESLAWAE-GGRLFSS----GLSGSIT   93 (691)
T ss_pred             ccceEEEEEeccCCceeeec----cCCcEEEEccCC--CceeeEEEecCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence            45666777778888888874    578999999887  556666666766 6899999996 5577775    7899999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      -||+.         ++++...+....+.|++++.+|.+.. ++.+++||.+..++...+........   ...+..+.++
T Consensus        94 EwDl~---------~lk~~~~~d~~gg~IWsiai~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLsl  160 (691)
T KOG2048|consen   94 EWDLH---------TLKQKYNIDSNGGAIWSIAINPENTI-LAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSL  160 (691)
T ss_pred             EEecc---------cCceeEEecCCCcceeEEEeCCccce-EEeecCCceEEEEecCCceEEEEeec---ccccceEEEE
Confidence            99999         78888889889999999999999984 77778999777777765432222221   1224589999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceee-------cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      +|+|++..++.|+.||.|++||..++..+....       ...   |.++.|-.++  .+++|.+.|+|.+||... +..
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTL  237 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-GTL  237 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-cch
Confidence            999999999999999999999999887655221       111   8888888777  599999999999999987 778


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      ++.+..|...|.+++.++++ ..+++++.|+.|..|.......+               +........|...|.+++..+
T Consensus       238 iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~---------------wv~~~~r~~h~hdvrs~av~~  301 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSE---------------WVINSRRDLHAHDVRSMAVIE  301 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccc---------------eeeeccccCCcccceeeeeec
Confidence            89999999999999999998 89999999999988877762111               223333456777899999987


Q ss_pred             CCCceEEEeeeCCeEEEeecCc
Q 018697          325 REPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +   .+++|+.|..+.+-....
T Consensus       302 ~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  302 N---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             c---eEEecceeeEEEEccccc
Confidence            6   789999999988766544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.3e-25  Score=178.06  Aligned_cols=206  Identities=18%  Similarity=0.284  Sum_probs=166.9

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeE
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (351)
                      +..+.+|.+.|.|++=+|..-..+++++.||.|+|||+........+     ..|.+.|.++++..  ..+++++.|.+|
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTV  131 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcce
Confidence            45678999999999999988555777789999999999964433332     24566899998875  567788888877


Q ss_pred             EEEEc--------------------------------------ccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCe
Q 018697          193 QFWDL--------------------------------------RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       193 ~iwd~--------------------------------------~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                      +.|-+                                      +...++..+..+.  +.++.|+|....+|+++.+|+.
T Consensus       132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence            76653                                      2223333443333  8999999999989999999999


Q ss_pred             EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      |.+||+|. ..|++.+. -...-+.|+|+|.+ ..+.+|+.|..++.||++.                  ...++..+.+
T Consensus       212 IvLyD~R~-~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~------------------l~~p~~v~~d  270 (433)
T KOG0268|consen  212 IVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN------------------LSRPLNVHKD  270 (433)
T ss_pred             eEEEeccc-CCccceee-eeccccceecCccc-cceeeccccccceehhhhh------------------hcccchhhcc
Confidence            99999998 66777765 34556889999977 8899999999999999997                  2678889999


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |.+.|.+++|+|.|+ -+++||.|.+|+||.++..
T Consensus       271 hvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cceeEEEeccCCCcc-hhccccccceEEEeecCCC
Confidence            999999999999999 7999999999999998753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.1e-24  Score=168.45  Aligned_cols=225  Identities=18%  Similarity=0.286  Sum_probs=175.1

Q ss_pred             eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC----------cccccccccCcccceeeeEECCCCCcEE-
Q 018697          116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN----------AQVQSKQSSGMLHYLSGGAWDPHDVNAV-  184 (351)
Q Consensus       116 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  184 (351)
                      .+.|.+.|+++...+....++++++.||.|.+||++.....          ..+-..+..+|...|.++.|-|-+.-++ 
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            35688999999998876656888899999999999864311          1112234567888999999999766555 


Q ss_pred             EeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018697          185 AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (351)
Q Consensus       185 ~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  261 (351)
                      +++.|.++++||..+.+....|.-.. |.+-+++|-..  -++++|..+-.|++.|+.. +..-+.+.+|...|.++.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEec
Confidence            55789999999999988888887555 88888888542  3788899999999999998 77899999999999999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      |..+..|++|+.||.|++||++..+.--.   -.+ ..+....+.+.+-..|.+.|++++|+.++. ++++++.|..+++
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~---~lD-~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFR---VLD-QHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRV  272 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeE---Eee-cccCccCccccccccccceeeeeeecccch-hhhhccCccceEE
Confidence            99988899999999999999997311000   000 000011233334567889999999999998 8999999999999


Q ss_pred             eecCc
Q 018697          342 ESVKP  346 (351)
Q Consensus       342 w~~~~  346 (351)
                      |+..+
T Consensus       273 wn~~~  277 (397)
T KOG4283|consen  273 WNMES  277 (397)
T ss_pred             eeccc
Confidence            99864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=7.1e-25  Score=180.98  Aligned_cols=245  Identities=15%  Similarity=0.225  Sum_probs=198.0

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--cccceeEEEecCCCCCcEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~  137 (351)
                      ....|..-|..+..|...+++++     +..|-|+|||+....      ...++..+..  ...-|.++...|||+. ++
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyT-----gGkgcVKVWdis~pg------~k~PvsqLdcl~rdnyiRSckL~pdgrt-Li  481 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYT-----GGKGCVKVWDISQPG------NKSPVSQLDCLNRDNYIRSCKLLPDGRT-LI  481 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEe-----cCCCeEEEeeccCCC------CCCccccccccCcccceeeeEecCCCce-EE
Confidence            35678899999999988888887     367789999998431      2233444432  3567899999999996 78


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.-.++.|||+.......+.....   .....++++.+||.+..++++.||.|.|||+.+...++.++ +|   +.|+
T Consensus       482 vGGeastlsiWDLAapTprikaelts---sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascI  557 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCI  557 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCC---cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeE
Confidence            88878899999999654433322211   12267889999999999999999999999999999999998 66   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      .++++|. .|-+|+-|.+||.||+|. .+.+.... ..+.|.++..+|.+ .+++.|-.++.+.+.....          
T Consensus       558 dis~dGt-klWTGGlDntvRcWDlre-grqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~sk----------  623 (705)
T KOG0639|consen  558 DISKDGT-KLWTGGLDNTVRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK----------  623 (705)
T ss_pred             EecCCCc-eeecCCCccceeehhhhh-hhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCC----------
Confidence            9999998 799999999999999997 43344332 45789999999999 9999999999988877764          


Q ss_pred             cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                .....+.-|+.-|.++.|.+.|+ .+++.+.|+.+..|..+
T Consensus       624 ----------p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  624 ----------PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             ----------ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCc
Confidence                      45566778999999999999999 68999999999999875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.3e-24  Score=176.80  Aligned_cols=268  Identities=14%  Similarity=0.225  Sum_probs=203.1

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      ...+.+|+++.....-.+..... +-.+.+++|+.... |+++.  .+.|..+++|.-...     .+....+....+. 
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~w~~~n~-lvvas--~~gdk~~~~~~K~g~-----~~~Vp~~~k~~gd-   80 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFNWQRRNF-LVVAS--MAGDKVMRIKEKDGK-----TPEVPRVRKLTGD-   80 (673)
T ss_pred             CCceEEeecccccCccccccCCC-CCcceeeeccccce-EEEee--cCCceeEEEecccCC-----CCccceeeccccc-
Confidence            46788899887654333222111 23489999987654 44432  578899999985511     1122223333332 


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                       .-.|++......+ +++++..+.|+|||++.     +.......+|...|+++.++-.+.+|++++..|.|.|..+.++
T Consensus        81 -~~~Cv~~~s~S~y-~~sgG~~~~Vkiwdl~~-----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   81 -NAFCVACASQSLY-EISGGQSGCVKIWDLRA-----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             -hHHHHhhhhccee-eeccCcCceeeehhhHH-----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence             3445544444453 66668899999999983     3334445678889999999999999999999999999999999


Q ss_pred             CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      .....+..+.   +.-+.|+|..+++|.+++.+|.|.+||+........-.+.|..+...|+|+|.++.+|++.+.|..|
T Consensus       154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence            8888887553   8899999999999999999999999999864433444568999999999999998999999999999


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+||++.                   ......+. ...+...++|+++|. +|++|...|.|..||++.
T Consensus       234 ~~yD~~s-------------------~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  234 NIYDIRS-------------------QASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             EEeeccc-------------------ccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc
Confidence            9999997                   44444442 345789999999998 899999999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=181.24  Aligned_cols=293  Identities=18%  Similarity=0.264  Sum_probs=227.6

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ..|+.+++..|+..+++..   ...|.+.+|++...  ++.......|.+.|..+.|.|..+.++++    +.|+.+++|
T Consensus       245 g~VtslSFrtDG~p~las~---~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta----~~DnSlk~~  315 (910)
T KOG1539|consen  245 GRVTSLSFRTDGNPLLASG---RSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTA----GADNSLKVW  315 (910)
T ss_pred             cceeEEEeccCCCeeEEec---cCCceEEEEEcCCC--eeeeeeeccccCCcccceecCCCceEeec----cCCCceeEE
Confidence            4577788888887766643   34577888998874  44555556899999999999977777765    678888877


Q ss_pred             EcccccC----------------------------------------------------C--------C------CCCcc
Q 018697           97 QIPELYG----------------------------------------------------Q--------L------NSPQL  110 (351)
Q Consensus        97 ~~~~~~~----------------------------------------------------~--------~------~~~~~  110 (351)
                      -.+...+                                                    .        .      .....
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            6552100                                                    0        0      00000


Q ss_pred             eee--------------------------------------eee-----eccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018697          111 ERI--------------------------------------AAL-----DAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (351)
Q Consensus       111 ~~~--------------------------------------~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i  147 (351)
                      .++                                      ..+     +.-...+++++.++.|+. .+.++..|.|-+
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~  474 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF-VFIGYSKGTIDR  474 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce-EEEeccCCeEEE
Confidence            000                                      001     001256788999999994 666777899999


Q ss_pred             EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE
Q 018697          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~  226 (351)
                      |++..+-....+.  ..+.|..+|++++...-++.+++++.+|.+.+||...+.....+..++ +.++..+.... +++.
T Consensus       475 fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~  551 (910)
T KOG1539|consen  475 FNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAI  551 (910)
T ss_pred             EEcccCeeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhh
Confidence            9999764443332  234678899999999888889999999999999999988888888777 88999988887 8999


Q ss_pred             ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018697          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      +.+|=.|+++|..+ .+.++.+.+|...|+.++|||+| ++|++++.|++|++||+.+                   +.+
T Consensus       552 ~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt-------------------~~l  610 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPT-------------------GTL  610 (910)
T ss_pred             hcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccC-------------------cce
Confidence            99999999999998 67899999999999999999999 9999999999999999999                   777


Q ss_pred             ceeeccccceEEEEEeCCCCCceEEEeeeC-CeEEEeecC
Q 018697          307 LNSYSDYEDSVYGLAWSSREPWIFASLSYD-GRVVVESVK  345 (351)
Q Consensus       307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~vw~~~  345 (351)
                      +-.+. -..++.++.|+|+|. +||+...| .-|++|.-.
T Consensus       611 ID~~~-vd~~~~sls~SPngD-~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  611 IDGLL-VDSPCTSLSFSPNGD-FLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             eeeEe-cCCcceeeEECCCCC-EEEEEEecCceEEEEEch
Confidence            77664 356789999999999 89999887 779999644

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.5e-23  Score=176.64  Aligned_cols=242  Identities=16%  Similarity=0.216  Sum_probs=194.2

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEEEEec
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      -.+.+|.+++|+.+.+.|+++    -.+|.|.+|++..        .+-....+.++ ...|.+++|++.++  +++++.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~--------~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~   88 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSN--------NWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGL   88 (691)
T ss_pred             eeccceEEEEEeccCCceeee----ccCCcEEEEccCC--------CceeeEEEecCCCCceeeEEEccCCe--EEeecC
Confidence            346799999999999888875    6899999999983        45555666665 56799999998887  788888


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--c--ceeEEEEcC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--H--AHVRNVDYD  217 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~--~~v~~~~~~  217 (351)
                      +|.|.-||+.+.++.......     ...|++++.+|.+..++.|+.||.+..++...++......  .  +.+.+++|+
T Consensus        89 sg~i~EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             CceEEEEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence            999999999986555443332     2389999999999999999999977777776665433222  1  229999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEee--------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  289 (351)
                      |++. .+++|+.||.|++||... +..+....        ....-|+++.|-.++  .|++|..-|+|.+||...     
T Consensus       164 ~~~~-~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-----  234 (691)
T KOG2048|consen  164 PTGT-KIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-----  234 (691)
T ss_pred             CCcc-EEEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-----
Confidence            9997 699999999999999987 43343111        122347888887664  899999999999999999     


Q ss_pred             CCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                    +.++..+..|...|.+++..+++. .++++|.|+.|..|...+.
T Consensus       235 --------------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  235 --------------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             --------------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCC
Confidence                          999999999999999999999988 7999999999988877654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-23  Score=169.96  Aligned_cols=280  Identities=15%  Similarity=0.211  Sum_probs=198.6

Q ss_pred             eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      ..+...+.+|++......+.++.-.  ...-.++..- .+.+++++.   ..-..+.+|.+..         ........
T Consensus        14 S~d~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l-~~~yllsaq---~~rp~l~vw~i~k---------~~~~~q~~   78 (476)
T KOG0646|consen   14 SFDPINCIVWDLRTGTSLLQYKGSY--LAQAASLTAL-NNEYLLSAQ---LKRPLLHVWEILK---------KDQVVQYI   78 (476)
T ss_pred             CCCCcceeEEecCCCceeEEecCcc--cccchhhhhh-chhheeeec---ccCccccccccCc---------hhhhhhhc
Confidence            3444567777777765544433210  1111122211 135676663   4455899999872         22222333


Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      .-.++|.+++-+|+|.+ ++++...+.+++|.+.++......     .+|-..|+++.|+-|+.++++++.||.|.+|++
T Consensus        79 v~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL  152 (476)
T ss_pred             ccccceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence            45678999999999994 555558899999999987644433     245669999999999999999999999999987


Q ss_pred             cc---------CCcCceeecce---eEEEEcCCCC-CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          198 RS---------MGKTNSIEHAH---VRNVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       198 ~~---------~~~~~~~~~~~---v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      ..         -++...+. .|   |+++...+.+ .-.+++++.|.++++||+.. +..+.++. ....+.+++.+|-+
T Consensus       153 ~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~-fp~si~av~lDpae  229 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTIT-FPSSIKAVALDPAE  229 (476)
T ss_pred             EeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEe-cCCcceeEEEcccc
Confidence            53         12333333 45   8888776652 22799999999999999987 66666665 57889999999999


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                       +.++.|+.+|.|.+.++...........-....   ..+..+..+.+|..  .|++++.+-||. +|++|+.||.|+||
T Consensus       230 -~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~---~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  230 -RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH---EENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVW  304 (476)
T ss_pred             -cEEEecCCcceEEeeehhcCCcccccccccccc---cccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEE
Confidence             999999999999999887643211100000000   12566777889987  999999999999 99999999999999


Q ss_pred             ecCc
Q 018697          343 SVKP  346 (351)
Q Consensus       343 ~~~~  346 (351)
                      |+.+
T Consensus       305 di~S  308 (476)
T KOG0646|consen  305 DIYS  308 (476)
T ss_pred             ecch
Confidence            9865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=183.11  Aligned_cols=241  Identities=16%  Similarity=0.257  Sum_probs=193.5

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      .+|...-+.|+|.|+|..|+++    +.|+.|++|+....        .....++..+...|.+++....   .+++++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~sd--------~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNSD--------EEEPETIDISGELVSSIACYSN---HFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEe----cCCCceEEeecCCc--------ccCCchhhccCceeEEEeeccc---ceEEeec
Confidence            5789999999999999977664    89999999997631        1222333337778888876544   2888899


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~  218 (351)
                      +++|.+|.+..+.....+...     +-++..++++.+|+++++|+.|-.|++.++........+. +|   |.++.|+|
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p  148 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP  148 (933)
T ss_pred             cceEEEeeCCCCCccceeeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC
Confidence            999999999876543222221     2389999999999999999999999999999887777777 55   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeC--------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPG--------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  290 (351)
                      .+. +||+.+-||.|++||+.. +....++.+        ....+..++|+|++ ..++....|+.|++|+...      
T Consensus       149 ~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~------  219 (933)
T KOG1274|consen  149 KGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG------  219 (933)
T ss_pred             CCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC------
Confidence            998 899999999999999986 544444432        13557889999998 7777788899999999998      


Q ss_pred             CCcccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          291 PSESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                   ++....+..  +...+..++|+|+|. +||+++.||.|.|||+++
T Consensus       220 -------------we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  220 -------------WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -------------ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEeccc
Confidence                         777776643  445589999999999 899999999999999985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=172.01  Aligned_cols=251  Identities=10%  Similarity=0.159  Sum_probs=200.1

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      .+.|+++.|+|..+.|+++    |.|++++||.++.       .....++.+.--..+|.+.+|.|+|...+++++....
T Consensus       213 ~~~I~sv~FHp~~plllva----G~d~~lrifqvDG-------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVA----GLDGTLRIFQVDG-------KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cCCceEEEecCCCceEEEe----cCCCcEEEEEecC-------ccChhheeeeeccCccceeeecCCCceEEEecccceE
Confidence            3799999999999888886    8999999999982       2334566666678899999999999965777788899


Q ss_pred             EEEEEcCCCCCCcccccccccCc-ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGM-LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH  222 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~  222 (351)
                      ++.||+.+.+.. ++....  ++ ...+..+..+|++++|+..+..|.|.+.-..+++.+..+.... +..++|+.+++ 
T Consensus       282 ~ysyDle~ak~~-k~~~~~--g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk-  357 (514)
T KOG2055|consen  282 LYSYDLETAKVT-KLKPPY--GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK-  357 (514)
T ss_pred             EEEeeccccccc-cccCCC--CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-
Confidence            999999864322 221111  11 2357778889999999999999999999999999999998655 99999999998 


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEeeCCCCce--eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      .|++.+.+|.|.+||++. ..+++.+.. .+.|  ++++.++++ .|||+|+..|.|.|||..+....            
T Consensus       358 ~l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s------------  422 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS------------  422 (514)
T ss_pred             EEEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc------------
Confidence            677778889999999998 467777763 3333  567778999 89999999999999997652111            


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCceEEEee--eCCeEEEeecCcc
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS--YDGRVVVESVKPF  347 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~  347 (351)
                       ...+++.++..-...|+++.|+|+.+ +||.++  .+..+|+-.+++.
T Consensus       423 -~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  423 -TNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             -CCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence             12577778877778899999999998 888777  5778999888764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=5.3e-22  Score=164.17  Aligned_cols=235  Identities=14%  Similarity=0.160  Sum_probs=186.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      .-|.|++|.+++.. ++    |.++|.|.||+..         ..+..+....|.+.|.+++...+|.  +++++.|..|
T Consensus       247 k~Vl~v~F~engdv-iT----gDS~G~i~Iw~~~---------~~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki  310 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-IT----GDSGGNILIWSKG---------TNRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKI  310 (626)
T ss_pred             eEEEEEEEcCCCCE-Ee----ecCCceEEEEeCC---------CceEEeEeeecCCceEEEEEecCcc--EeecCccceE
Confidence            68999999998854 45    4889999999976         4555556669999999999999999  7888999999


Q ss_pred             EEEEcCCCCCCcccc------------------------------------cccccCcccceeeeEECCCCCcEEEeecC
Q 018697          146 FLWSLDCSNKNAQVQ------------------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (351)
                      ..||-+ -.+...+.                                    .....+|......++.+|+.+.+++++.|
T Consensus       311 ~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd  389 (626)
T KOG2106|consen  311 ILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD  389 (626)
T ss_pred             Eecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence            999932 11111100                                    01123566678889999999999999999


Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                      +.+++|+  ..++..+..... ..|+.|+|.|  .++.|...|...+.|.++ ...+..-. ...+++.++|+|+| .+|
T Consensus       390 k~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~-d~~~ls~v~ysp~G-~~l  462 (626)
T KOG2106|consen  390 KHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHT-DNEQLSVVRYSPDG-AFL  462 (626)
T ss_pred             ceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEe-cCCceEEEEEcCCC-CEE
Confidence            9999999  445555555444 9999999999  688899999999999987 54444444 48999999999999 999


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      |.|+.|+.|+||.+...                  +...... +.+.++|+.++|++|++ ++.+-+.|-.|..|.
T Consensus       463 Avgs~d~~iyiy~Vs~~------------------g~~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSAN------------------GRKYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK  519 (626)
T ss_pred             EEecCCCeEEEEEECCC------------------CcEEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence            99999999999999862                  3322222 33448899999999999 899999999999994

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=2e-23  Score=163.51  Aligned_cols=255  Identities=14%  Similarity=0.157  Sum_probs=185.6

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc---eeeeeee-ccccceeEEEec-------CCCCC
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL---ERIAALD-AHVGKINCVLWW-------SSGRH  134 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~~~~~-~h~~~v~~~~~~-------~~~~~  134 (351)
                      .-...+.|+|||..|++.    +.|..+++|++.........+..   .....++ .....|...+|-       |+.. 
T Consensus        50 nf~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-  124 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-  124 (406)
T ss_pred             hhhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-
Confidence            345578999999999986    79999999999854322221111   1111222 224567777775       3444 


Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc-ccCCc---Cceeecc-
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMGK---TNSIEHA-  209 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~---~~~~~~~-  209 (351)
                      ++++++.+.-|++||.-+++.......-..........+++|+|||..|++|- ...|+++|+ +.|..   ..++..+ 
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence            46667899999999999876555443332222223567899999999888764 779999999 55542   1222221 


Q ss_pred             ----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcC
Q 018697          210 ----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVS  283 (351)
Q Consensus       210 ----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~  283 (351)
                          . +.+++|+|....+++.|+....+-||.-.. ..++..+-+|.+.|+.++|.++| +.|.+|.. |-.|..||++
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeeh
Confidence                1 899999998877899999988888888765 67899999999999999999999 67777765 7799999999


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccc-eEEE--EEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYG--LAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .                  ...++..+..|.. .-..  +...|+++ +|++|+.||.|++||++++
T Consensus       282 ~------------------~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  282 Y------------------SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             h------------------ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCC
Confidence            7                  2677777777654 2233  45578898 8999999999999999874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.9e-23  Score=160.81  Aligned_cols=282  Identities=14%  Similarity=0.253  Sum_probs=214.3

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      -..+.+++.+.-+++|.    .++.+.+|++..-+   ..+.+.+|-.+|.+++||++|+.|+++    +.|..|.+||+
T Consensus        26 a~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~Llts----S~D~si~lwDl   94 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGC----ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTS----SRDWSIKLWDL   94 (405)
T ss_pred             cceEEeccCcceeeeec----cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeee----cCCceeEEEec
Confidence            34466888888899885    47999999998754   346678899999999999999999986    89999999999


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-cccceeeeEEC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWD  177 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  177 (351)
                      .         .+.+++.+ ...++|+.+.|.|...+.++++-.+..-.+-++..  ....++.....+ ......+..|.
T Consensus        95 ~---------~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen   95 L---------KGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             c---------CCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccccc
Confidence            8         56677777 46789999999998887778875455556666654  233333332222 12223334689


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc--------cee
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--------PIQ  246 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~  246 (351)
                      +.|+++++|...|.+.++|..+-+++..++...   |..+.++..|+ .|+.-+.|..||.|+++....        +.+
T Consensus       163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~  241 (405)
T KOG1273|consen  163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEH  241 (405)
T ss_pred             CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence            999999999999999999999998887776333   88999999998 788899999999999873211        111


Q ss_pred             EeeC--CCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEe
Q 018697          247 ELPG--HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAW  322 (351)
Q Consensus       247 ~~~~--~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  322 (351)
                      .++.  ....=.+++|+.+| .|++.++. -..++||....                   +.+++.+.+.. .....+.|
T Consensus       242 K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~w  301 (405)
T KOG1273|consen  242 KLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNW  301 (405)
T ss_pred             HHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeeccc
Confidence            1110  11223578899999 77776654 55899999998                   99999998876 56788999


Q ss_pred             CCCCCceEEEeeeCCeEEEeecCc
Q 018697          323 SSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +|-.+ .+++- ..|.|++|....
T Consensus       302 hp~rp-~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  302 HPVRP-IIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             cccee-eeeec-cCCceEEEEeec
Confidence            99877 67776 689999998753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-24  Score=196.17  Aligned_cols=254  Identities=18%  Similarity=0.308  Sum_probs=188.8

Q ss_pred             eeeeCCCCC-ceEEEEeec------CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC---cEEEE
Q 018697           70 DLSSCPFDQ-RIFSTVFST------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DKLVS  139 (351)
Q Consensus        70 ~i~~~~~~~-~l~~~~~~~------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~  139 (351)
                      .++|+|.+. .++++..++      +.+.++.||.+.....   ....+++..+ .-...-..++|.+.+..   +++.+
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~---~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDE---SSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCc---cccccccccc-cccccceeeeecccCCCccceeecc
Confidence            568999886 333332222      2344567777653211   1112344333 23456789999998875   24444


Q ss_pred             ecCCcEEEEEcCCC-CCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecc---e-eEE
Q 018697          140 IDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHA---H-VRN  213 (351)
Q Consensus       140 ~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-v~~  213 (351)
                      ..||.|.+||.... .............|.+.|..+.|++... .|++|+.||.|.|||+...+........   . |.+
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC  166 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence            78999999998863 1112222233457888999999999876 7888889999999999986655554211   2 999


Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC--ceeEEEecCCCCCeEEEeeCCC---eEEEEEcCCCCCC
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHD  288 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~  288 (351)
                      ++|+..-.++|++++.+|.+.|||+|. ++++..+..|..  .+..++|+|++...|++++.|.   .|.+||+|.    
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~----  241 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF----  241 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc----
Confidence            999998888999999999999999998 567777765554  4778999999977777777654   799999997    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                    ...+++++.+|...|.++.|++.+..++++++.|+.|.+|+.++
T Consensus       242 --------------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  242 --------------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             --------------cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence                          26778888999999999999999866999999999999999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.8e-23  Score=174.97  Aligned_cols=249  Identities=16%  Similarity=0.203  Sum_probs=198.3

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|.+|...|.|.+|++    |+.||+|+||.+.         ++.++.++ ...+.|.||+|+|.+...+++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlas----GsdDGtvriWEi~---------TgRcvr~~-~~d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLAS----GSDDGTVRIWEIA---------TGRCVRTV-QFDSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeee----cCCCCcEEEEEee---------cceEEEEE-eecceeEEEEecCCCCceeEE
Confidence            456799999999999999999988    5899999999999         78888887 456799999999998765666


Q ss_pred             EecCCcEEEEEcCCCCCCcc-----ccc---------------------------ccccCcccceeeeEECCCCCcEEEe
Q 018697          139 SIDEENIFLWSLDCSNKNAQ-----VQS---------------------------KQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~-----~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                      .+....+.|.+..-+.+...     .+.                           .....|...|..+.|+..|.||++.
T Consensus       460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            66555666665443211100     000                           0011244578999999999999988


Q ss_pred             ec---CCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018697          187 TC---ESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (351)
Q Consensus       187 ~~---d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  261 (351)
                      ..   ...|.|.++........|...+  +.++.|+|...+ |++++. ..|++||+.. +..++.+.....+|..++.+
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~k-qelvKkL~tg~kwiS~msih  616 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSK-QELVKKLLTGSKWISSMSIH  616 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhH-HHHHHHHhcCCeeeeeeeec
Confidence            64   4689999998777666665444  999999999985 444543 5899999987 66777777778899999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      |.| .-|+.|+.|+.+..||+..                  ..++.+++..|...+++++|++.-+ +|++|+.||.+.|
T Consensus       617 p~G-Dnli~gs~d~k~~WfDldl------------------sskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~V  676 (733)
T KOG0650|consen  617 PNG-DNLILGSYDKKMCWFDLDL------------------SSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIV  676 (733)
T ss_pred             CCC-CeEEEecCCCeeEEEEccc------------------CcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEE
Confidence            999 7888899999999999986                  2578888999999999999999998 9999999999999


Q ss_pred             eec
Q 018697          342 ESV  344 (351)
Q Consensus       342 w~~  344 (351)
                      +.-
T Consensus       677 fhg  679 (733)
T KOG0650|consen  677 FHG  679 (733)
T ss_pred             Eee
Confidence            863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4e-23  Score=168.12  Aligned_cols=208  Identities=17%  Similarity=0.264  Sum_probs=167.9

Q ss_pred             cceeEEEecCC-------CCCcEEEEecCCcEEEEEcCCCCCCcccc----------------cccccCcccceeeeEEC
Q 018697          121 GKINCVLWWSS-------GRHDKLVSIDEENIFLWSLDCSNKNAQVQ----------------SKQSSGMLHYLSGGAWD  177 (351)
Q Consensus       121 ~~v~~~~~~~~-------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~  177 (351)
                      ....|++|...       |+ +++.+..|..|.|||+.--.......                .....+|+..|.+++|+
T Consensus       174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            34467777543       33 36666789999999987432211111                11134688889999998


Q ss_pred             CCCCc-EEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018697          178 PHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (351)
Q Consensus       178 ~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (351)
                      ..-+. |++|+.|.+|++||+.++++..++....  |.+++|+|....+|++|+.|+++.+.|.|.+...-..++ ..+.
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~  331 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE  331 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence            87554 6678899999999999999998888322  999999999988999999999999999996554444444 4678


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      |-.++|.|..+..++++..||+|+-+|+|.                  .++++.+++.|.++|.++++++.-+.++++++
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~------------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRN------------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCC------------------CCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence            999999999988999999999999999998                  26899999999999999999998888999999


Q ss_pred             eCCeEEEeecCccc
Q 018697          335 YDGRVVVESVKPFL  348 (351)
Q Consensus       335 ~dg~v~vw~~~~~~  348 (351)
                      .|+.|++|++....
T Consensus       394 ~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  394 TDKVVKLWKFDVDS  407 (463)
T ss_pred             ccceEEEEeecCCC
Confidence            99999999987533

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=3.3e-23  Score=169.16  Aligned_cols=219  Identities=14%  Similarity=0.175  Sum_probs=170.1

Q ss_pred             cceeeeeeeccccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC-CcEEEe
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAA  186 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  186 (351)
                      ........+.+.++|++++|+|... .+++++...|+|-+||+.+.++... .......|..+|.++.|+|.+ ..+++.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-GVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-ceEEeccCCccccceEecCCChhheeee
Confidence            3445556778999999999999887 5455557789999999963222111 111123567799999999965 458888


Q ss_pred             ecCCeEEEEEcccCCcCceeec--ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018697          187 TCESSVQFWDLRSMGKTNSIEH--AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (351)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~~~~~--~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  262 (351)
                      +.||+|++-|++.......+..  ..  +..+.|+.+.+ .++.+..=|...+||+|..+.....+..|...|.+|+++|
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence            9999999999997643332222  22  88899999888 5666777679999999997776777888999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      ..+.+|+|++.|++.+|||++....+               ..++...-.|...|.+..|||++. .|++.+.|..|+||
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K---------------~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGK---------------ASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVF  396 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCC---------------CCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEe
Confidence            99999999999999999999973322               222334457899999999999998 59999999999999


Q ss_pred             ecC
Q 018697          343 SVK  345 (351)
Q Consensus       343 ~~~  345 (351)
                      |..
T Consensus       397 dss  399 (498)
T KOG4328|consen  397 DSS  399 (498)
T ss_pred             ecc
Confidence            984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.7e-23  Score=159.42  Aligned_cols=213  Identities=16%  Similarity=0.272  Sum_probs=161.1

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc--cccccccCcccceeeeEECCCCCcEEEee-cC
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE  189 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  189 (351)
                      +..+++|...|++++|+.||++ +++.+.|+.|++|+++.......  +......+   ..+.+.|.||-+.+++.. ..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccC
Confidence            3467899999999999999996 66668999999999986322211  11111112   467889999988877654 56


Q ss_pred             CeEEEEEcccCC---cC--------ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce
Q 018697          190 SSVQFWDLRSMG---KT--------NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (351)
Q Consensus       190 ~~i~iwd~~~~~---~~--------~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (351)
                      .++++|-+...+   ..        ..+...|   +..+-....+. ++++++.|..|.+|+++  ++.+..+......-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSN  231 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeeccccccc
Confidence            789999876432   11        1122223   55566666666 89999999999999998  77888888777777


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      +..+.+|+| +++++++..--|++|.+-........           .-..+..+++|...|..++|+++.. .+++.+.
T Consensus       232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fq-----------ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSk  298 (420)
T KOG2096|consen  232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQ-----------EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSK  298 (420)
T ss_pred             cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchh-----------hhhhhheeccchhheeeeeeCCCcc-eeEEEec
Confidence            888999999 99999999888999988652221111           1345677899999999999999988 8999999


Q ss_pred             CCeEEEeecC
Q 018697          336 DGRVVVESVK  345 (351)
Q Consensus       336 dg~v~vw~~~  345 (351)
                      ||+.+|||.+
T Consensus       299 DG~wriwdtd  308 (420)
T KOG2096|consen  299 DGKWRIWDTD  308 (420)
T ss_pred             CCcEEEeecc
Confidence            9999999975

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-22  Score=166.21  Aligned_cols=218  Identities=16%  Similarity=0.210  Sum_probs=178.6

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      .|++......++++    ||..+.|+|||+.         .....+.++.|+..|+++.++....+ +++.+..|.|.|.
T Consensus        83 ~Cv~~~s~S~y~~s----gG~~~~Vkiwdl~---------~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih  148 (673)
T KOG4378|consen   83 FCVACASQSLYEIS----GGQSGCVKIWDLR---------AKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIH  148 (673)
T ss_pred             HHHhhhhcceeeec----cCcCceeeehhhH---------HHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEE
Confidence            34444444466766    5899999999998         44566778999999999999998884 5555778999999


Q ss_pred             EcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEE
Q 018697          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL  224 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l  224 (351)
                      .+.++.....+...    ....|.-+.|+|..+.++ +++.+|.|.+||+....+...+...|   ...++|+|....+|
T Consensus       149 ~~~t~~~tt~f~~~----sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  149 GTKTKQKTTTFTID----SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             ecccCccccceecC----CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence            99976554433321    123677899999888765 56789999999999888888887777   88899999999899


Q ss_pred             EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      ++-+.|..|.+||.+. ......+. -..+.+.++|.++| .+|+.|...|.|..||++.                  ..
T Consensus       225 vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~------------------~k  283 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRS------------------TK  283 (673)
T ss_pred             EEecccceEEEeeccc-ccccceee-ecCCcceeeecCCc-eEEEeecCCceEEEEeccc------------------CC
Confidence            9999999999999996 55555554 46789999999999 9999999999999999997                  37


Q ss_pred             ccceeeccccceEEEEEeCCC
Q 018697          305 SLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      .++.+...|...|++++|.|.
T Consensus       284 ~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             CCceEeeecccceeEEEeeec
Confidence            889999999999999999885

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=7.8e-22  Score=154.67  Aligned_cols=281  Identities=17%  Similarity=0.242  Sum_probs=204.9

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC------e----EEEEeeecCCcceeeeeeC-------CCC
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------E----LICEGLFSHPNEIWDLSSC-------PFD   77 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------~----~~~~~~~~h~~~v~~i~~~-------~~~   77 (351)
                      +...+..+.++|++..++..+    +++.+.+|.+..+..      .    ............|...+|-       |+.
T Consensus        48 p~nf~kgckWSPDGSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   48 PLNFLKGCKWSPDGSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             chhhhccceeCCCCceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence            445566678999999988754    688999999875321      0    1111112234677777774       445


Q ss_pred             CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--cccc---eeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018697           78 QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGK---INCVLWWSSGRHDKLVSIDEENIFLWSLDC  152 (351)
Q Consensus        78 ~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  152 (351)
                      ..+++    ++.+.-|.+||.-         +++....++.  |.++   ..+++|+|||..  +.++....|+++|+..
T Consensus       124 ~l~a~----ssr~~PIh~wdaf---------tG~lraSy~~ydh~de~taAhsL~Fs~DGeq--lfaGykrcirvFdt~R  188 (406)
T KOG2919|consen  124 NLFAV----SSRDQPIHLWDAF---------TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ--LFAGYKRCIRVFDTSR  188 (406)
T ss_pred             ceeee----ccccCceeeeecc---------ccccccchhhhhhHHhhhhheeEEecCCCCe--EeecccceEEEeeccC
Confidence            45555    3799999999987         4555555543  4433   468999999994  5556678999999964


Q ss_pred             CCCCccccc---ccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEE
Q 018697          153 SNKNAQVQS---KQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLV  225 (351)
Q Consensus       153 ~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~  225 (351)
                      ..+......   ....+....+.+++|+|... .+++++....+-||.-..+.++..+. +|   |+.+.|.++|. .|+
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lf  266 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLF  266 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eec
Confidence            443333222   21233455789999999766 67788888888888877777776666 55   99999999998 566


Q ss_pred             Eec-CCCeEEEEecccCCcceeEeeCCCC-ceeEEEe--cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          226 TAA-DESGIHLWDLRMLKAPIQELPGHTH-WTWAVCC--NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       226 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      +|. .+..|..||+|....++..+..|.. .-..|.|  .|++ ++|++|+.||.|++||+...                
T Consensus       267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~----------------  329 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL----------------  329 (406)
T ss_pred             ccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC----------------
Confidence            666 4789999999998888988888876 3344544  6888 99999999999999999872                


Q ss_pred             cccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                        +..+..+..|...++.++++|--+ ++|+++..
T Consensus       330 --gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  330 --GNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             --CCcccccccccccccceecCcccc-eeeeccCc
Confidence              566777888999999999999877 78777643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=158.22  Aligned_cols=245  Identities=14%  Similarity=0.162  Sum_probs=177.7

Q ss_pred             eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018697           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (351)
Q Consensus        68 v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i  147 (351)
                      -.++.|++.|.+|+++    ..||.|.|||+.         +...-+.+.+|..+|++++||++|+. +++++.|..|.+
T Consensus        26 a~~~~Fs~~G~~lAvG----c~nG~vvI~D~~---------T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D~si~l   91 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVG----CANGRVVIYDFD---------TFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRDWSIKL   91 (405)
T ss_pred             cceEEeccCcceeeee----ccCCcEEEEEcc---------ccchhhhhhccccceeEEEecCCCCE-eeeecCCceeEE
Confidence            6799999999999886    589999999999         67777889999999999999999995 888899999999


Q ss_pred             EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCC--cCceeecce----eEEEEcCCCC
Q 018697          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKK  220 (351)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~--~~~~~~~~~----v~~~~~~~~~  220 (351)
                      ||+..+....++....      +|+...|+|.....+.++ .+..-.+.++..+.  .+..-..+.    ..+..|.+.|
T Consensus        92 wDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   92 WDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             EeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence            9999887655554433      899999999776655544 33334444444321  111111111    4455689999


Q ss_pred             CcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      + ++++|...|.+.+||..+ .+++..++... ..|..+.++..| +.|+..+.|..||.|+++..-..     ..+.  
T Consensus       166 ~-yIitGtsKGkllv~~a~t-~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~-----~r~~--  235 (405)
T KOG1273|consen  166 K-YIITGTSKGKLLVYDAET-LECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE-----GRDG--  235 (405)
T ss_pred             C-EEEEecCcceEEEEecch-heeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc-----CccC--
Confidence            8 799999999999999998 56777777655 789999999999 99999999999999998741100     0000  


Q ss_pred             cccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          300 NQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       300 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                         ..++.+.+..  ....-.++.|+.+|.+++++......++||.-.
T Consensus       236 ---e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  236 ---EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             ---CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence               0122222211  112235688999999555555567789999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.90  E-value=1.3e-21  Score=151.36  Aligned_cols=262  Identities=15%  Similarity=0.241  Sum_probs=191.0

Q ss_pred             cCCcceeeeeeCC--C-CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC---cE
Q 018697           63 SHPNEIWDLSSCP--F-DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DK  136 (351)
Q Consensus        63 ~h~~~v~~i~~~~--~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~  136 (351)
                      ..+-.+.++.|+.  + +.+|+.+.+.....+.|.|-.+.++..     ......+ ..|.-+++.+.|.|+...   -+
T Consensus        42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----ELVEDAN-FDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----ceeccCC-CCCCCCccceEecCCccccCcch
Confidence            3456778888873  3 335666544444556788877763211     2222223 378899999999998631   14


Q ss_pred             EEEecCCcEEEEEcCCCCCCcc----cccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCc--Cceeecc
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQ----VQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK--TNSIEHA  209 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~  209 (351)
                      ++++. ..+++|.+...+....    +.......+..+++++.|+.-.. ++.+++-|-+..|||++++..  +.+.-.+
T Consensus       116 LATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  116 LATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            55543 4899999984322211    11122334556899999987554 556677899999999999743  2332234


Q ss_pred             e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEecCCCCCeEEEeeCCC-eEEEEEcC
Q 018697          210 H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVS  283 (351)
Q Consensus       210 ~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~  283 (351)
                      |   |..++|...+..+|++.+.||.+|+||+|........++.  ...+...++|++..++++|+-..|+ .|.|.|++
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            5   9999999988889999999999999999985544334443  2467899999999989999887765 69999999


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      .                  ...++..+.+|.+.|++++|.|..+..++++|+|..+.+||++....
T Consensus       275 ~------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  275 V------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             C------------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            8                  26789999999999999999998888999999999999999987544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=5e-21  Score=158.48  Aligned_cols=264  Identities=17%  Similarity=0.246  Sum_probs=192.1

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCc-----ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCC
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES-----YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR  133 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  133 (351)
                      +...+|...|.|++.+|+.-.++++- .++.+     ..+++||..         +...+..+......|+|++|++...
T Consensus        98 r~y~GH~ddikc~~vHPdri~vatGQ-~ag~~g~~~~phvriWdsv---------~L~TL~V~g~f~~GV~~vaFsk~~~  167 (626)
T KOG2106|consen   98 RHYLGHNDDIKCMAVHPDRIRVATGQ-GAGTSGRPLQPHVRIWDSV---------TLSTLHVIGFFDRGVTCVAFSKING  167 (626)
T ss_pred             ccccCCCCceEEEeecCCceeeccCc-ccccCCCcCCCeeeecccc---------cceeeeeeccccccceeeeecccCC
Confidence            44678999999999999775555432 22222     359999977         6677778877788999999998543


Q ss_pred             CcEEEE---ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee---e
Q 018697          134 HDKLVS---IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI---E  207 (351)
Q Consensus       134 ~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~  207 (351)
                      ..++..   +.+..+.+||...+.+...+...     .+.|....|+|.++.++.....+.+.+|+++.+......   +
T Consensus       168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe  242 (626)
T KOG2106|consen  168 GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE  242 (626)
T ss_pred             CceEEEecCCCccccchhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc
Confidence            223333   55677899999976555544432     237888999999999999999999999999987544332   2


Q ss_pred             cc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          208 HA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       208 ~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..  . |.|++|.++|+  +++|.++|.|.||+.+. .+..+....|.+.|.+++.-.+|  .|++|+.|..|..||-..
T Consensus       243 k~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  243 KREKKFVLCVTFLENGD--VITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNY  317 (626)
T ss_pred             cccceEEEEEEEcCCCC--EEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccc
Confidence            11  2 99999999997  88999999999999987 44555555999999999999998  455599999999999433


Q ss_pred             CCCCCCCCcccccCCc--------c-------------cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          285 SNHDELPSESLVESPN--------Q-------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ....+.....+.+...        .             .......+..+|....+.++.+|+.. ++++++.|+.+++|+
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN  396 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc
Confidence            2222211111111110        0             01111223357888899999999988 899999999999999

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=159.42  Aligned_cols=246  Identities=13%  Similarity=0.167  Sum_probs=182.7

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC-CCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      -+.+.|++||..         +++.+..++++...+..+.|..+ +.+.+++++.||+|++||++...+.........+ 
T Consensus        47 lSngsv~lyd~~---------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-  116 (376)
T KOG1188|consen   47 LSNGSVRLYDKG---------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-  116 (376)
T ss_pred             ecCCeEEEEecc---------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence            578899999988         67889999999999999999775 6666777789999999999976655554443322 


Q ss_pred             cccceeeeEECCCCCcEEEee----cCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          167 MLHYLSGGAWDPHDVNAVAAT----CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                       ..+..+++.+-.++.+++|+    .+-.|.+||+|..+. +..+...|   |+++.|+|..+++|++|+.||.|.+||+
T Consensus       117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence             13667777766677777775    467899999998776 67777677   9999999999999999999999999999


Q ss_pred             ccCCc--ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc---ccccC--------------C
Q 018697          239 RMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE---SLVES--------------P  299 (351)
Q Consensus       239 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~--------------~  299 (351)
                      .....  .+...-.|...|.++.|..++=..|.+-+...+..+|+++.+..+.....   .....              +
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~  275 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP  275 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence            86432  23333357888999999877635688889999999999987653211110   00000              0


Q ss_pred             c-------------------------ccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          300 N-------------------------QRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       300 ~-------------------------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .                         ....+.+..+.+ |..-|+++.|...+. ++.+||.||.+.+|..+
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEecC
Confidence            0                         011122333444 667788888987777 89999999999999954

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.3e-21  Score=163.73  Aligned_cols=222  Identities=13%  Similarity=0.096  Sum_probs=158.1

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      ++.|+.+++||+.         +.+.+..+..+. .+.+++|+|++..++++++.++.|++||+.++.....+...    
T Consensus         7 ~~~d~~v~~~d~~---------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----   72 (300)
T TIGR03866         7 NEKDNTISVIDTA---------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG----   72 (300)
T ss_pred             ecCCCEEEEEECC---------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence            4789999999987         456667776554 46789999999854455577899999999875433222211    


Q ss_pred             cccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC-eEEEEecccCCc
Q 018697          167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKA  243 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~  243 (351)
                        ..+..++|+|+++.+++++ .++.+++||+++.+.+..+.... +..++|+|++. +++++..++ .+.+||.++ ..
T Consensus        73 --~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~-~~  148 (300)
T TIGR03866        73 --PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKT-YE  148 (300)
T ss_pred             --CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCC-Ce
Confidence              1356789999999877654 68999999999877766666444 88999999998 677666654 577889876 44


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-------cc
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------ED  315 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  315 (351)
                      .+..+. ....+..++|+|++ .+| +++..++.|++||+++                   ++.+..+..+       ..
T Consensus       149 ~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~  207 (300)
T TIGR03866       149 IVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVAT-------------------RKVIKKITFEIPGVHPEAV  207 (300)
T ss_pred             EEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCc-------------------ceeeeeeeecccccccccC
Confidence            444333 23345789999999 665 5556799999999987                   4444433211       11


Q ss_pred             eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          316 SVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ....++|+|+++.++++.+.++.+.+||+.+.
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             CccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            23568899999954565666788999998753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=6.8e-22  Score=152.70  Aligned_cols=235  Identities=12%  Similarity=0.210  Sum_probs=173.0

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec---C----CcEEEEEcCCCCCCc---
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID---E----ENIFLWSLDCSNKNA---  157 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~---d----~~v~iwd~~~~~~~~---  157 (351)
                      -.|+.|.+-+++.+.      ..-....+..|.+.|+.++-+|..+.++.+...   |    ....||.+.......   
T Consensus        37 K~dNqVhll~~d~e~------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~  110 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEG------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS  110 (370)
T ss_pred             CCcceeEEEEecCcc------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc
Confidence            356777777776321      112234566788999999999998875544432   1    246799988543331   


Q ss_pred             --ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc-Cceeec------ce-eEEEEcCCCCCcEEEEe
Q 018697          158 --QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEH------AH-VRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       158 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~------~~-v~~~~~~~~~~~~l~~~  227 (351)
                        .....-...+...+.++.|.|++..+++-. |..|.+|++..+.. +..+..      .+ ..+-+|+|...--.+..
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence              111111223344899999999998888766 88999999997765 322221      12 88889999332123445


Q ss_pred             cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc
Q 018697          228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (351)
                      ..|+++..||+|+..+....-..|...|..+.|+|+.+.+|++++.||.|+|||.+.                  ...++
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------------tk~pv  251 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------------TKFPV  251 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------------CCccc
Confidence            678999999999865544445589999999999999989999999999999999997                  36789


Q ss_pred             eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .++.+|...|+++.|+|....++.++|.|..|.+|.....
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence            9999999999999999977669999999999999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-22  Score=169.76  Aligned_cols=257  Identities=19%  Similarity=0.231  Sum_probs=198.9

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+..|.+.|..++|.|....|+++    +.|+++++|++.. .........+++.++++|.++|.|++..+++.. ++++
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk-~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysg  362 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQK-AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSG  362 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcc-cCCccccceeeeEEEecccCceEEEEecCCceE-EEee
Confidence            567899999999999999999886    7999999999943 223334456889999999999999999999995 7888


Q ss_pred             ecCCcEEEEEcCCCCC-----CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec--ce--
Q 018697          140 IDEENIFLWSLDCSNK-----NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH--  210 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~--  210 (351)
                      +.||+|+.|++.....     ....+.....||...++.+++++....|++++.||+++.|+.....+ .++..  .+  
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            9999999997762221     12244556778999999999999999999999999999999876655 33332  22  


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      ..++++-.......++...-+.-.++++.. ...+..+..       ....+..+.++|.+ .+.+++..|+.|+++|..
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccc
Confidence            667776554432333333334444444443 222333321       11346788899999 899999999999999999


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +                   +.++.....|...++++++.|+|. +|++++.|+.+++|++.
T Consensus       520 ~-------------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  520 T-------------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             c-------------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhcc
Confidence            9                   899999999999999999999999 89999999999999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.4e-21  Score=168.71  Aligned_cols=266  Identities=15%  Similarity=0.201  Sum_probs=195.1

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC-CCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+.+..++++..+++    .+.++.|+.|+--.+ ..+   ..+..+...|.+++...  .+|+++    +.+++|.+|.
T Consensus        16 ~t~i~~d~~gefi~t----cgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~~s--~~f~~~----s~~~tv~~y~   82 (933)
T KOG1274|consen   16 LTLICYDPDGEFICT----CGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIACYS--NHFLTG----SEQNTVLRYK   82 (933)
T ss_pred             eEEEEEcCCCCEEEE----ecCCCceEEeecCCcccCC---chhhccCceeEEEeecc--cceEEe----eccceEEEee
Confidence            455666666663333    357888888875544 221   11222777888887654  366664    7999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      +.         .++.-..+...+-++.+++++-+|.. +++++.|-.|++.++.+......+     .+|..+|.++.|+
T Consensus        83 fp---------s~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~  147 (933)
T KOG1274|consen   83 FP---------SGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYD  147 (933)
T ss_pred             CC---------CCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheee-----cccCCceeeeeEc
Confidence            98         44554456666779999999999995 777788999999999865443332     3577799999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeec---------ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      |++++|++.+.||.|++||+.++.....+..         .. +..++|+|++. .++....|+.|++|+... ......
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~-we~~f~  225 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKG-WELQFK  225 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCC-ceehee
Confidence            9999999999999999999998876655541         12 77899999987 566678889999999886 334444


Q ss_pred             ee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          248 LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       248 ~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      +.  .+...+..++|+|.| .|||+++.||.|.|||..+                   ...    ......|.+++|.|+
T Consensus       226 Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t-------------------~~~----~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT-------------------HER----HEFKRAVCCEAWKPN  281 (933)
T ss_pred             ecccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc-------------------chh----ccccceeEEEecCCC
Confidence            43  344559999999999 9999999999999999986                   222    122346899999998


Q ss_pred             CCceEEEeeeCCeE
Q 018697          326 EPWIFASLSYDGRV  339 (351)
Q Consensus       326 ~~~~l~s~~~dg~v  339 (351)
                      .. .+-.-...|..
T Consensus       282 ~n-~it~~~~~g~~  294 (933)
T KOG1274|consen  282 AN-AITLITALGTL  294 (933)
T ss_pred             CC-eeEEEeecccc
Confidence            87 34333333433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=1.3e-21  Score=166.24  Aligned_cols=148  Identities=16%  Similarity=0.274  Sum_probs=108.9

Q ss_pred             CCCEEEEEEeCCCCCeE-EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           40 EENEVHLLRLSSGGTEL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      +.+.+.++-+...+... ....+-+|.+.|.++.|+|-...|+++   ++.|..|+||.+........   ..+-..+.+
T Consensus        53 ~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT---~S~D~~VKiW~lp~g~~q~L---Sape~~~g~  126 (1012)
T KOG1445|consen   53 EGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLAT---CSRDEPVKIWKLPRGHSQKL---SAPEIDVGG  126 (1012)
T ss_pred             CCceEEEEeccccCccccccceeecccceeeccCccccchhhhhc---ccCCCeeEEEecCCCccccc---CCcceeecC
Confidence            34577777777544322 334567899999999999988888887   49999999999983211111   012223434


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      ..-.|.++.|+|.... +++++..|.++|||+.+.+....     ..+|...|.+..|+.||..|++++.|..|+|||.+
T Consensus       127 ~~~~vE~l~fHpTaDg-il~s~a~g~v~i~D~stqk~~~e-----l~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  127 GNVIVECLRFHPTADG-ILASGAHGSVYITDISTQKTAVE-----LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             CceEEEEeecccCcCc-eEEeccCceEEEEEcccCceeec-----ccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            4567899999998876 66666679999999997543332     33677799999999999999999999999988876


Q ss_pred             c
Q 018697          199 S  199 (351)
Q Consensus       199 ~  199 (351)
                      +
T Consensus       201 a  201 (1012)
T KOG1445|consen  201 A  201 (1012)
T ss_pred             c
Confidence            4

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.90  E-value=8.6e-20  Score=155.87  Aligned_cols=277  Identities=14%  Similarity=0.169  Sum_probs=178.4

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.|.+|++... +.+.......+.+....++++|+++.|+++.   ..++.|.+|++..      ......+.... 
T Consensus         9 ~~~~~I~~~~~~~~-g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~------~g~l~~~~~~~-   77 (330)
T PRK11028          9 PESQQIHVWNLNHE-GALTLLQVVDVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIAD------DGALTFAAESP-   77 (330)
T ss_pred             CCCCCEEEEEECCC-CceeeeeEEecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECC------CCceEEeeeec-
Confidence            45789999999643 3333333344556788899999999988763   4678899999862      11222233222 


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~  197 (351)
                      .......++++|+++.++++...++.|.+|++++...........  .+.....+++++|+++++++++ .++.|.+||+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            233567899999999644444558999999997533222211110  1112466788999999987765 5699999999


Q ss_pred             ccCCcCc-------eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC-C--cceeEeeCC------CCceeEEEe
Q 018697          198 RSMGKTN-------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-K--APIQELPGH------THWTWAVCC  260 (351)
Q Consensus       198 ~~~~~~~-------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~------~~~v~~~~~  260 (351)
                      .+...+.       ....+. +..++|+|++++++++...++.|.+||+... +  +.+..+..+      ......+.+
T Consensus       156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            8633221       112223 7889999999954444445899999999742 1  123333221      122346889


Q ss_pred             cCCCCCeEEEee-CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018697          261 NPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (351)
Q Consensus       261 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  339 (351)
                      +|++ ++++++. .++.|.+|++......               .+.+...... ...+.+.++|+|++++++...++.|
T Consensus       236 ~pdg-~~lyv~~~~~~~I~v~~i~~~~~~---------------~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        236 TPDG-RHLYACDRTASLISVFSVSEDGSV---------------LSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             CCCC-CEEEEecCCCCeEEEEEEeCCCCe---------------EEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcE
Confidence            9999 7777775 4789999999751000               1122222211 2456899999999666666669999


Q ss_pred             EEeecC
Q 018697          340 VVESVK  345 (351)
Q Consensus       340 ~vw~~~  345 (351)
                      .+|+++
T Consensus       299 ~v~~~~  304 (330)
T PRK11028        299 SVYEID  304 (330)
T ss_pred             EEEEEc
Confidence            999885

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-20  Score=146.63  Aligned_cols=257  Identities=18%  Similarity=0.251  Sum_probs=187.4

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-eEEEEeeecCCcceeeeee-CCCCCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSS-CPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      -+..+.++..+.|++.++    .+..+.+|++..+.+ .-.......|.+.|..+.| +|.-..++++|   +.|+++.|
T Consensus        15 lihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~i   87 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSI   87 (361)
T ss_pred             eeeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceee
Confidence            456677888888988775    578999999765544 4445678899999999999 45444555553   89999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcc--------cccccccC
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQ--------VQSKQSSG  166 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~--------~~~~~~~~  166 (351)
                      |.-...........+....++......|+.++|.|....+.+++ +.||.++||+.-.......        ........
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            98642222222335667778888889999999999877666666 8899999999765432211        11112234


Q ss_pred             cccceeeeEECCC---CCcEEEeecC-----CeEEEEEcccCC----cCceeecce---eEEEEcCCCCC---cEEEEec
Q 018697          167 MLHYLSGGAWDPH---DVNAVAATCE-----SSVQFWDLRSMG----KTNSIEHAH---VRNVDYDTKKK---HLLVTAA  228 (351)
Q Consensus       167 ~~~~v~~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~---v~~~~~~~~~~---~~l~~~~  228 (351)
                      +..+..|+.|+|.   .++|++|+.+     +.++||......    .+..+. ++   |++++|.|+-.   +++++++
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEee
Confidence            5668889999974   3567777654     578888765432    223333 33   99999999732   5799999


Q ss_pred             CCCeEEEEecccCC-------------------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          229 DESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       229 ~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .|| |+||.++...                   +.+..+..|...|..+.|+-.| ..|++.+.||+||+|....
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence            999 9999987311                   1345567899999999999999 9999999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=3.3e-21  Score=154.91  Aligned_cols=232  Identities=17%  Similarity=0.268  Sum_probs=177.2

Q ss_pred             CCCEEEEEEeCCCCC-eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           40 EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..+...++-+..-+. .-....+.+|.++|.+++|+|.+...++.   |++|.+|.||.+.+..-  ...-.+++..+.+
T Consensus        55 gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~~l--~~~ltepvv~L~g  129 (472)
T KOG0303|consen   55 GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS---GSEDTKVMVWQIPENGL--TRDLTEPVVELYG  129 (472)
T ss_pred             CCcceeecccccccccCCCCCCccCccccccccccCccCCceeec---CCCCceEEEEECCCccc--ccCcccceEEEee
Confidence            334555555444321 11224467999999999999998888886   69999999999985322  1223367888999


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      |...|--++|+|....++++++.|.+|.+|++.++.....+.      |...|++++|+.+|..+++++.|..|+|||.+
T Consensus       130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence            999999999999998878888999999999999876655432      56699999999999999999999999999999


Q ss_pred             cCCcCceeecce----eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEE
Q 018697          199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +++.+..-. +|    ...+.|-.++. ++.+|.   ++..+-+||......++...+ ...+.|.---|.|+...+.++
T Consensus       204 ~~~~v~e~~-~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~  281 (472)
T KOG0303|consen  204 RGTVVSEGV-AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC  281 (472)
T ss_pred             CCcEeeecc-cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE
Confidence            998877663 44    66677888887 666654   467899999887666643332 234567767788988344445


Q ss_pred             eeCCCeEEEEEcCC
Q 018697          271 AGTDSTVNLWLVST  284 (351)
Q Consensus       271 ~~~dg~i~iwd~~~  284 (351)
                      |-.|+.||.|.+..
T Consensus       282 GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  282 GKGDSSIRYFEITN  295 (472)
T ss_pred             ecCCcceEEEEecC
Confidence            55699999999987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=5.2e-21  Score=163.57  Aligned_cols=273  Identities=14%  Similarity=0.220  Sum_probs=208.1

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ..++..+.+.|++..++++     .++.+.+++..+.+   ....+.+|.+.|.+++|+.+|+++++    |+.|..|.+
T Consensus        12 ~hci~d~afkPDGsqL~lA-----Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFAS----G~aDK~VI~   79 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILA-----AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFAS----GSADKSVII   79 (1081)
T ss_pred             ccchheeEECCCCceEEEe-----cCCEEEEEeCCCcc---cccccccccceEEEEEEccCCceecc----CCCceeEEE
Confidence            3477788899999999876     46788888877754   34678899999999999999999988    589999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |+-.          .+-+..+ .|.+.|.|+.|+|-... +++++ =...-+|.....    .+....   ....+.+.+
T Consensus        80 W~~k----------lEG~LkY-SH~D~IQCMsFNP~~h~-LasCs-LsdFglWS~~qK----~V~K~k---ss~R~~~Cs  139 (1081)
T KOG1538|consen   80 WTSK----------LEGILKY-SHNDAIQCMSFNPITHQ-LASCS-LSDFGLWSPEQK----SVSKHK---SSSRIICCS  139 (1081)
T ss_pred             eccc----------ccceeee-ccCCeeeEeecCchHHH-hhhcc-hhhccccChhhh----hHHhhh---hheeEEEee
Confidence            9854          2333344 79999999999999884 44433 345778887631    111111   123789999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-----eEEEEcCCCCC----cEEEEecCCCeEEEEecccCCccee
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                      |..||++++.|-.+|+|.+-+- +++....+..+.     |.+++|+|...    .++++.....++.+|.+.  ++.+.
T Consensus       140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Ig  216 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIG  216 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeec
Confidence            9999999999999999998754 345545554321     99999998743    367777777888888876  33343


Q ss_pred             EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                      .-..-.-...|+.+.++| .+++.|+.|+.+++|-..                    +-.+.++.....+|+.++..|++
T Consensus       217 k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~--------------------GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD--------------------GVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             ccccCCCCchhheeccCC-cEEEEccCCCceEEEeec--------------------CeEEeeccccceeEEEEEEccCC
Confidence            222233445789999999 999999999999999765                    56777777777899999999999


Q ss_pred             CceEEEeeeCCeEEEeecC
Q 018697          327 PWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~  345 (351)
                      + .++.|..||+|..|++-
T Consensus       276 Q-~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  276 Q-YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             c-eEEEEEccCeeehhhhH
Confidence            9 89999999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=5.8e-21  Score=153.52  Aligned_cols=251  Identities=10%  Similarity=0.155  Sum_probs=181.7

Q ss_pred             eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018697           73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC  152 (351)
Q Consensus        73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  152 (351)
                      |+.-+..+++....++..|...+--+.....     -....-.+.+|+++|..++|+|.+...+++++.|.+|.||.+..
T Consensus        39 fcavNPkfiAvi~easgGgaf~ViPl~k~Gr-----~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe  113 (472)
T KOG0303|consen   39 FCAVNPKFVAVIIEASGGGAFLVIPLVKTGR-----MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE  113 (472)
T ss_pred             ccccCCceEEEEEecCCCcceeecccccccc-----cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCC
Confidence            3444555555554555555666655542110     01122346799999999999999887566669999999999987


Q ss_pred             CCCCcccc--cccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEec
Q 018697          153 SNKNAQVQ--SKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA  228 (351)
Q Consensus       153 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~  228 (351)
                      +.......  .....+|...|.-++|+|... .|++++.|..|.+|++.+++.+.++.+.. |.++.|+.+|. ++++.+
T Consensus       114 ~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~Ttc  192 (472)
T KOG0303|consen  114 NGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTC  192 (472)
T ss_pred             cccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeec
Confidence            65544443  334678999999999999754 57788899999999999999888887444 99999999998 899999


Q ss_pred             CCCeEEEEecccCCcceeEeeCCCCc-eeEEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          229 DESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      .|..|||||.|+ +..+.+-.+|.+. -..+.|-.++ .++-||-   .+.++-+||......                .
T Consensus       193 kDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~e----------------P  254 (472)
T KOG0303|consen  193 KDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEE----------------P  254 (472)
T ss_pred             ccceeEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccC----------------c
Confidence            999999999998 7677777777743 4566788888 6555553   377899999876210                2


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      -.+..+.. ++.|.---|.++.+-+.++|-.|+.||.|.+....
T Consensus       255 ~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  255 IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            22333433 34466666888888444566689999999987544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=168.58  Aligned_cols=244  Identities=14%  Similarity=0.188  Sum_probs=191.5

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcceEEEEE
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      ..+..+|+.+-++.|.    ..+.++++++.....   ...+..|+.+|.|+.|+.-  +..|++.   ++.|..|.|||
T Consensus       463 R~~~vSp~gqhLAsGD----r~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~D  532 (1080)
T KOG1408|consen  463 RALAVSPDGQHLASGD----RGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVYD  532 (1080)
T ss_pred             EEEEECCCcceecccC----ccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEEe
Confidence            3456677888887764    457888888877542   2445689999999999852  3344443   48999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      +..        ...++.++.+|...|+++.|...|- ..+++++.|..|.+--..+.............--...+++++.
T Consensus       533 v~r--------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  533 VKR--------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             ccc--------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence            984        5678889999999999999988772 2366668887765433322111111111111112337999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (351)
                      .|..+++++++.|..|+|||+++++....|+..+     ...+...|.|- ++++.+.|.++.++|.-+ ++++.++.+|
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s-gEcvA~m~GH  682 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS-GECVAQMTGH  682 (1080)
T ss_pred             CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc-chhhhhhcCc
Confidence            9999999999999999999999999999998544     77889999998 799999999999999998 8899999999


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...|+.+.|.+|- +.|++.+.||+|.+|.+..
T Consensus       683 sE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chheeeeeecccc-hhheeecCCceEEEEECch
Confidence            9999999999999 9999999999999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=1.5e-20  Score=164.57  Aligned_cols=228  Identities=18%  Similarity=0.238  Sum_probs=176.0

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC-cccccccccCccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-AQVQSKQSSGMLH  169 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~  169 (351)
                      +.+.||++..        ...+...+ .-...|+|+.|+|....+++.|..+|+|.+||+..+... ..........|..
T Consensus       222 ~~~~vW~~~~--------p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~  292 (555)
T KOG1587|consen  222 GVLLVWSLKN--------PNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE  292 (555)
T ss_pred             ceEEEEecCC--------CCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence            4789999983        23444455 456789999999999987777788999999999976553 3334444556888


Q ss_pred             ceeeeEECCCCCc--EEEeecCCeEEEEEcccCCcCc------eee-------cce-eEEEEcCCCCCcEEEEecCCCeE
Q 018697          170 YLSGGAWDPHDVN--AVAATCESSVQFWDLRSMGKTN------SIE-------HAH-VRNVDYDTKKKHLLVTAADESGI  233 (351)
Q Consensus       170 ~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~------~~~-------~~~-v~~~~~~~~~~~~l~~~~~dg~i  233 (351)
                      ++..+.|..+...  +++++.||.|..|+++.-....      ...       ... +++++|.+..++.+++|+++|.|
T Consensus       293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v  372 (555)
T KOG1587|consen  293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV  372 (555)
T ss_pred             CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence            9999999765544  9999999999999987533211      111       111 89999999999899999999998


Q ss_pred             EEEeccc---CC----cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC-CCCCCCCCCcccccCCcccccc
Q 018697          234 HLWDLRM---LK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS-TSNHDELPSESLVESPNQRANS  305 (351)
Q Consensus       234 ~i~d~~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  305 (351)
                      .--+...   ..    +....+..|.++|..+.++|-+...+++++ |.+++||... .                   ..
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-------------------~~  432 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-------------------AS  432 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-------------------CC
Confidence            8733322   11    224455678899999999999966666666 9999999988 4                   67


Q ss_pred             cceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++..+..+...|++++|||..+.+|+++..||.|.+||+...
T Consensus       433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            777888888889999999999889999999999999998643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.1e-20  Score=160.54  Aligned_cols=258  Identities=15%  Similarity=0.187  Sum_probs=180.7

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      .++-++.+-+...+|+-    ...+..+++|++....- .-.....+|...|.+++|.|.++.++++   |+.||.|.||
T Consensus       101 nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRDg~illW  172 (720)
T KOG0321|consen  101 NAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSRL-VGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRDGEILLW  172 (720)
T ss_pred             ceeEeeccCCCceeEEE----ccCCceeeeeeecccee-ecceeecccccccchhhhccCCCcceee---ccCCCcEEEE
Confidence            34555666664444443    23567888888876431 1123478999999999999999999998   7999999999


Q ss_pred             EcccccC---------------C---CCCCcceeeeeeeccccceeE---EEecCCCCCcEEEEe-cCCcEEEEEcCCCC
Q 018697           97 QIPELYG---------------Q---LNSPQLERIAALDAHVGKINC---VLWWSSGRHDKLVSI-DEENIFLWSLDCSN  154 (351)
Q Consensus        97 ~~~~~~~---------------~---~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~  154 (351)
                      |+....-               .   ...+.-+.+..-..|...|.+   +.+..|... +++++ .|+.|+|||+.+..
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeecccc
Confidence            9974320               0   111111222233345555555   555666663 55554 59999999999644


Q ss_pred             CCccccccc---ccCc---ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc--Cceeecce-----eEEEEcCCCCC
Q 018697          155 KNAQVQSKQ---SSGM---LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKK  221 (351)
Q Consensus       155 ~~~~~~~~~---~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-----v~~~~~~~~~~  221 (351)
                      .........   ..-|   ...+.++.....|.+|++.+.|+.|++|++.+-..  +..+. ++     -..-..+|++.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCc
Confidence            322211111   1111   33577788888899999999999999999986432  22222 22     22345789998


Q ss_pred             cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                       .+++|+.|...++|.+.++..+...+.+|...|++++|.|..-.-+++++.|..+++|++..+
T Consensus       331 -~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  331 -SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             -eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence             799999999999999999888889999999999999999877667888899999999999654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.8e-20  Score=158.26  Aligned_cols=296  Identities=17%  Similarity=0.263  Sum_probs=206.1

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCc-eEEEEeecCCcceEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR-IFSTVFSTGESYGAA   94 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~   94 (351)
                      ...+..++.++.+..++-|.    .++.+++|.+-...    +.......+.|.|++|+|.+.. +++++    ....+.
T Consensus       400 tg~Vr~iSvdp~G~wlasGs----dDGtvriWEi~TgR----cvr~~~~d~~I~~vaw~P~~~~~vLAvA----~~~~~~  467 (733)
T KOG0650|consen  400 TGLVRSISVDPSGEWLASGS----DDGTVRIWEIATGR----CVRTVQFDSEIRSVAWNPLSDLCVLAVA----VGECVL  467 (733)
T ss_pred             CCeEEEEEecCCcceeeecC----CCCcEEEEEeecce----EEEEEeecceeEEEEecCCCCceeEEEE----ecCceE
Confidence            34455666777777777764    68999999988742    2223345679999999997654 22221    111233


Q ss_pred             EEEccc-----------ccCCC---CCC--------------cceeeeeeeccccceeEEEecCCCCCcEEEE--ecCCc
Q 018697           95 IWQIPE-----------LYGQL---NSP--------------QLERIAALDAHVGKINCVLWWSSGRHDKLVS--IDEEN  144 (351)
Q Consensus        95 vw~~~~-----------~~~~~---~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--~~d~~  144 (351)
                      |-+-.-           .....   ..+              ...-+...-.|...|..+.|+..|.++..+.  +....
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            322110           00000   000              0011233346888999999999999743333  34578


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKH  222 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~  222 (351)
                      |.|+++........+.  ..   ...+.++.|+|...+|++++ ...|++||+..+..+..+..+.  |..++.+|.|.+
T Consensus       548 VliHQLSK~~sQ~PF~--ks---kG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFR--KS---KGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN  621 (733)
T ss_pred             EEEEecccccccCchh--hc---CCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence            9999998543322221  11   23789999999999888877 4579999999877777766454  999999999995


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                       ++.|+.|+.+..||+....++.+++.-|...+++|+|++.- .+|++|+.||++.||--.....-.          +..
T Consensus       622 -li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~----------qnp  689 (733)
T KOG0650|consen  622 -LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLL----------QNP  689 (733)
T ss_pred             -EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhh----------cCC
Confidence             66799999999999998778999999999999999999999 999999999999998543310000          000


Q ss_pred             ccccceeeccccce----EEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          303 ANSLLNSYSDYEDS----VYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       303 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      .--++..+.+|...    |.++.|+|..+| |++++.||+|++|
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            02345667788765    889999999995 7788889999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=1.3e-20  Score=152.03  Aligned_cols=252  Identities=20%  Similarity=0.287  Sum_probs=171.0

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEE  143 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~  143 (351)
                      ..+|..+.|.++....+++   +|.|..|++|.+............+.+..+..|...|+++.|+|+|.  ++++ +++|
T Consensus        13 ~~pv~s~dfq~n~~~~laT---~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g   87 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLAT---AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGG   87 (434)
T ss_pred             CCceEEEEeccCcccceec---ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCc
Confidence            3688899999887734444   48999999999985544433345667788899999999999999999  5555 7889


Q ss_pred             cEEEEEcCCC------C-----CCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--
Q 018697          144 NIFLWSLDCS------N-----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--  210 (351)
Q Consensus       144 ~v~iwd~~~~------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--  210 (351)
                      .|.+|....-      .     +..........+|...++.++|+|++.++++++.|+.+++||+..++....+. .|  
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~  166 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEH  166 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccc
Confidence            9999987621      1     11112223345688899999999999999999999999999999887655544 22  


Q ss_pred             -eEEEEcCCCCCcEEEEecCCCeE--------------------------------------------------------
Q 018697          211 -VRNVDYDTKKKHLLVTAADESGI--------------------------------------------------------  233 (351)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i--------------------------------------------------------  233 (351)
                       +..++|.|-++ ++++-+.|...                                                        
T Consensus       167 yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll  245 (434)
T KOG1009|consen  167 YVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL  245 (434)
T ss_pred             ccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence             55555555554 34444433332                                                        


Q ss_pred             ------------------EEEecccCCcceeEeeCCCCceeEEEecC------------------CCCCeEEEeeCCCeE
Q 018697          234 ------------------HLWDLRMLKAPIQELPGHTHWTWAVCCNP------------------EYDGFILSAGTDSTV  277 (351)
Q Consensus       234 ------------------~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~l~s~~~dg~i  277 (351)
                                        ++|+-....+|...+.....++..+.|+|                  .+ ..+|.++. ..|
T Consensus       246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~-~sv  323 (434)
T KOG1009|consen  246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATK-NSV  323 (434)
T ss_pred             EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeec-ceE
Confidence                              33333333334444444444444455544                  11 34445554 468


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .+||.+.                   ..++... .-|-..|++++|+++|. .++..+.||...+-.++
T Consensus       324 yvydtq~-------------------~~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  324 YVYDTQT-------------------LEPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             EEecccc-------------------ccceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEc
Confidence            8888887                   5555554 34888999999999999 78888899976665443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=1.2e-20  Score=148.27  Aligned_cols=267  Identities=14%  Similarity=0.168  Sum_probs=191.5

Q ss_pred             CCEEEEEEeCCCCCeEEEEe-e-ecCCcceeeeeeCCC----CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018697           41 ENEVHLLRLSSGGTELICEG-L-FSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~-~-~~h~~~v~~i~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (351)
                      .+.+.++....+..-...+. . ..|+..-..++|+-+    +..+++    +|.-|.|+|.|+.         +.+...
T Consensus        63 ~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~GvIrVid~~---------~~~~~~  129 (385)
T KOG1034|consen   63 GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYLGVIRVIDVV---------SGQCSK  129 (385)
T ss_pred             CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecceeEEEEEecc---------hhhhcc
Confidence            46777777776653222222 1 237777888888643    334444    4789999999998         778888


Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+.+|...|..+.+.|+...++++++.|..|++|++++..  .........+|...|.++.|++++.++++++.|..+++
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            9999999999999999998888888999999999999643  33344556789999999999999999999999999999


Q ss_pred             EEcccCCcCceeec---------------------------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          195 WDLRSMGKTNSIEH---------------------------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       195 wd~~~~~~~~~~~~---------------------------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      |++...+....++.                           -|   |-|+.|-  |. ++++-+-++.|..|...+.++.
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhh
Confidence            99984432111110                           01   4444443  44 6777777789999987322222


Q ss_pred             -------------eeEeeCCCCceeEEE--ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018697          245 -------------IQELPGHTHWTWAVC--CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (351)
Q Consensus       245 -------------~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                                   +.++.-....|+-+.  |+|.+ ..||.|...|.|.+||++...+.                 ...+
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~-----------------~~tt  346 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPP-----------------KCTT  346 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCc-----------------cCce
Confidence                         223333334455554  56777 89999999999999999972211                 1112


Q ss_pred             e--ccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          310 Y--SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       310 ~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +  ......|+..+|+.|+. +|+...+|++|.-||-
T Consensus       347 l~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  347 LTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence            2  22345799999999999 8888899999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=3.3e-20  Score=162.53  Aligned_cols=277  Identities=14%  Similarity=0.211  Sum_probs=199.5

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  122 (351)
                      .+++|++.....   ......-+..|.++.|+|....++++   |..+|.|.+||+.......   ....-.....|..+
T Consensus       223 ~~~vW~~~~p~~---Pe~~~~~~s~v~~~~f~p~~p~ll~g---G~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  223 VLLVWSLKNPNT---PELVLESPSEVTCLKFCPFDPNLLAG---GCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEP  293 (555)
T ss_pred             eEEEEecCCCCC---ceEEEecCCceeEEEeccCCcceEEe---eccCceEEEEEccCCCCCC---CcccccccccCCcC
Confidence            577788877633   23344567899999999999999887   6899999999998421110   01111223468999


Q ss_pred             eeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCccccccccc-------CcccceeeeEECCCCCc-EEEeecCCeEE
Q 018697          123 INCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-------GMLHYLSGGAWDPHDVN-AVAATCESSVQ  193 (351)
Q Consensus       123 v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~  193 (351)
                      |+.+.|..+.. .-+++++.||.|..|+++..............       .....+++++|.+.... +++|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            99999976432 22666688999999998754332222221111       11236888999886554 77788889987


Q ss_pred             EEEcccCCcCc----eee---cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018697          194 FWDLRSMGKTN----SIE---HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (351)
Q Consensus       194 iwd~~~~~~~~----~~~---~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  263 (351)
                      --+....+...    ...   ..|   |.++.++|-+..++.+++ |.+++||.......|+..+..+...+++++|||.
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            73333222111    111   122   999999999986666666 9999999988336788888888888999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .+.+|+++..||.|.+||+....                 ..++.+.+.+....+.+.|+++|+ +++.|...|.+.+|+
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~-----------------~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDD-----------------EEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILK  514 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccc-----------------cCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEE
Confidence            98999999999999999998621                 345555555566678889999998 999999999999999


Q ss_pred             cCcc
Q 018697          344 VKPF  347 (351)
Q Consensus       344 ~~~~  347 (351)
                      +.+.
T Consensus       515 l~~~  518 (555)
T KOG1587|consen  515 LSES  518 (555)
T ss_pred             cCch
Confidence            9754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=5e-20  Score=158.00  Aligned_cols=275  Identities=14%  Similarity=0.196  Sum_probs=201.1

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+..++|.-.+.........+.||.+.|.+++|.|.|++|+++    |.|.+-||+---.   .  ......+..-+.|.
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv----s~DQTTRlFa~wg---~--q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV----SLDQTTRLFARWG---R--QQEWHEIARPQIHG  407 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe----ccccceeeecccc---c--ccceeeeccccccc
Confidence            4556666622222234446678999999999999999999997    7999999886431   0  11245555566788


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCC--------------C-----------------C-Cc-----------
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS--------------N-----------------K-NA-----------  157 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--------------~-----------------~-~~-----------  157 (351)
                      ..++|+++-+... .++.+.+...+++|+....              +                 + ..           
T Consensus       408 yDl~c~~~vn~~~-~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~  486 (764)
T KOG1063|consen  408 YDLTCLSFVNEDL-QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA  486 (764)
T ss_pred             ccceeeehccCCc-eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence            8999999988532 2666677788899986420              0                 0 00           


Q ss_pred             ---c---------cc----------------cccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEcccCCcCc
Q 018697          158 ---Q---------VQ----------------SKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRSMGKTN  204 (351)
Q Consensus       158 ---~---------~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~  204 (351)
                         +         +.                .....||-..|++++.+|+++.+++++.     ...|++|+..+-....
T Consensus       487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~  566 (764)
T KOG1063|consen  487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ  566 (764)
T ss_pred             eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence               0         00                0112367778999999999999998874     3578999998887777


Q ss_pred             eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      .+. .|   |+.++|+||++ +|++.+.|.++.+|........   ....+.|+.-|....|+|++ .+++|++.|.+|+
T Consensus       567 ~L~-~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  567 ELE-GHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVK  643 (764)
T ss_pred             eec-ccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-ceeEEecCCceEE
Confidence            676 66   99999999999 7889999999999998643222   23367899999999999999 9999999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccce--eeccccceEEEEEeCCC----CCceEEEeeeCCeEEEeecC
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSR----EPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +|......                 .+.+.  ....+...|+.++|.|-    ...+++.|-..|.|.+|..+
T Consensus       644 VW~~~~~~-----------------d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  644 VWEEPDLR-----------------DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEeccCch-----------------hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99988611                 02222  23456788999999772    22367788899999999965

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=151.77  Aligned_cols=278  Identities=13%  Similarity=0.150  Sum_probs=196.5

Q ss_pred             CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCC
Q 018697           54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSG  132 (351)
Q Consensus        54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  132 (351)
                      .++..+.+.+|.+.|++|.|+.++++|++    ||.|..+++|++++.--.   ...+++.... .|...|.|++|...+
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~S----GGDD~~~~~W~~de~~~~---k~~KPI~~~~~~H~SNIF~L~F~~~N  117 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLAS----GGDDMHGRVWNVDELMVR---KTPKPIGVMEHPHRSNIFSLEFDLEN  117 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEee----cCCcceeeeechHHHHhh---cCCCCceeccCccccceEEEEEccCC
Confidence            34555678899999999999999988888    589999999999742111   1224444443 456899999999887


Q ss_pred             CCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce-
Q 018697          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH-  210 (351)
Q Consensus       133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~-  210 (351)
                      .. ++++..+++|.+.|+.+.+.+.....   ......|+.+..+|..+.+++.+.++.|.+||.+..+ ....+-.+. 
T Consensus       118 ~~-~~SG~~~~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  118 RF-LYSGERWGTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             ee-EecCCCcceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence            73 66678899999999997543332222   2234489999999999999999999999999999765 333332222 


Q ss_pred             ---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE----------------------------------------
Q 018697          211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE----------------------------------------  247 (351)
Q Consensus       211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------  247 (351)
                         ...+.|+|..+.+|++.++.+-+.+||.|.+..++..                                        
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence               8899999999989999999999999999864322111                                        


Q ss_pred             -------ee-CCC-------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC--CCcc-cccCC-cccccccce
Q 018697          248 -------LP-GHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--PSES-LVESP-NQRANSLLN  308 (351)
Q Consensus       248 -------~~-~~~-------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~  308 (351)
                             ++ .|.       ..+.+++|..+  ..+++|+.+-.|++|.+........  +++. ....| .......+.
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence                   00 011       12344555544  4589999999999998865322111  1111 00111 111234566


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .+++|..-++.+.|+|... +|++.+..+.+++|.--
T Consensus       352 VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EEecccccccceeecCCcc-eEeccchhhheeccccc
Confidence            7899999999999999876 89999999999999754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.3e-20  Score=148.05  Aligned_cols=262  Identities=15%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             CCcceeeeccccce--eEeeeecCCCCcceEEEeeeee------------CCCCEEEEEEeCCCCCeEEEEeeecCCcce
Q 018697            3 GGSSGIGYGLKYQA--RCISDVKADTDHTSFLTGTLSL------------KEENEVHLLRLSSGGTELICEGLFSHPNEI   68 (351)
Q Consensus         3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v   68 (351)
                      ||....+|..+.+.  |.++....+.....|+..+...            +..+.|+++++..   ......+.+|...|
T Consensus        62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~---~~~~~~~~ghG~sI  138 (385)
T KOG1034|consen   62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS---GQCSKNYRGHGGSI  138 (385)
T ss_pred             CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch---hhhccceeccCccc
Confidence            55556777777655  5555443321112222222111            2335566666554   34567889999999


Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee---eccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      +.|.|+|+...|+.+   ++.|..|++|+++         +..++..+   .+|.+.|.++.|++++.+ +++++.|.++
T Consensus       139 Neik~~p~~~qlvls---~SkD~svRlwnI~---------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhsl  205 (385)
T KOG1034|consen  139 NEIKFHPDRPQLVLS---ASKDHSVRLWNIQ---------TDVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSL  205 (385)
T ss_pred             hhhhcCCCCCcEEEE---ecCCceEEEEecc---------CCeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceE
Confidence            999999999887776   4899999999999         56777665   579999999999999994 6666899999


Q ss_pred             EEEEcCCCCCCcccc---------------------cc--cccCcccceeeeEECCCCCcEEEeecCCeEEEEEc-ccCC
Q 018697          146 FLWSLDCSNKNAQVQ---------------------SK--QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMG  201 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~---------------------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~  201 (351)
                      ++|++...+-...+.                     ..  ...-|...|-|+.|-  |+++++-+.++.|..|.. +-++
T Consensus       206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e  283 (385)
T KOG1034|consen  206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE  283 (385)
T ss_pred             EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh
Confidence            999998422110000                     00  112355667777775  578888888999999987 2222


Q ss_pred             cCcee-------------ecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce-eEee--CCCCceeEEEec
Q 018697          202 KTNSI-------------EHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI-QELP--GHTHWTWAVCCN  261 (351)
Q Consensus       202 ~~~~~-------------~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~~v~~~~~~  261 (351)
                      ....+             ..+.    ....+|+|-++ +||.|...|.|.+||++....+. .++.  .....|...+|+
T Consensus       284 ~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS  362 (385)
T KOG1034|consen  284 SIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS  362 (385)
T ss_pred             hhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence            21111             1111    33456678887 89999999999999999744322 2222  123578999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCC
Q 018697          262 PEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .++ .+|+....|++|.-||..+
T Consensus       363 ~dg-s~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  363 RDG-SILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ccC-cEEEEEeCCCcEEEEEeec
Confidence            999 9999999999999998753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=9.9e-21  Score=144.49  Aligned_cols=246  Identities=15%  Similarity=0.151  Sum_probs=179.4

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      +.+|.+.|+++.|..+++ |++    |...|.|.+|.+.         +.+....++ .|...|+.+.--|++.  +.+-
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~s----g~~~G~V~~w~lq---------t~r~~~~~r~~g~~~it~lq~~p~d~--l~tq   73 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMS----GLSVGIVKMWVLQ---------TERDLPLIRLFGRLFITNLQSIPNDS--LDTQ   73 (323)
T ss_pred             eccccchheehhhccchh-hhc----ccccceEEEEEee---------cCccchhhhhhccceeeceeecCCcc--hhhc
Confidence            348999999999988765 666    4788999999998         455666666 5678899999999866  6666


Q ss_pred             ecCCcEEEEEcCCCCC-----------------------Cc-cccccc------------------------ccCcccce
Q 018697          140 IDEENIFLWSLDCSNK-----------------------NA-QVQSKQ------------------------SSGMLHYL  171 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~-----------------------~~-~~~~~~------------------------~~~~~~~v  171 (351)
                      +.|..+.+|++.....                       .. +....+                        ..+....+
T Consensus        74 gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   74 GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            8999999999875110                       00 000000                        00011234


Q ss_pred             eeeEECC-CCC--cEEEeecCCeEEEEEcccCCcCceeec---------ce---eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          172 SGGAWDP-HDV--NAVAATCESSVQFWDLRSMGKTNSIEH---------AH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       172 ~~~~~~~-~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                      .+..|.- ++.  .+++|-.+|.+.+||+.++..+..++.         .|   +.++.+.+.-. .=++|+.+..+..|
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~  232 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMY  232 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceee
Confidence            4444322 222  355667899999999998743333321         12   88888876654 34667778889999


Q ss_pred             ecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018697          237 DLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (351)
Q Consensus       237 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      .+.....   .-.++....-.|..+..-||+ +.+||++.|+.||+|..++                   ..++..++.|
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-------------------l~pLAVLkyH  292 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-------------------LNPLAVLKYH  292 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc-------------------CCchhhhhhh
Confidence            8875321   122233345678999999999 9999999999999999999                   8999999999


Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ...|++++|+|+.+ ++|+++.|++|.+|++
T Consensus       293 sagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            99999999999987 9999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.4e-19  Score=133.23  Aligned_cols=242  Identities=14%  Similarity=0.214  Sum_probs=172.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc-eeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      ..|.+-+++|.+++|+++    ..+|.|.+..+.+.......+.+ ..+...++|+++|..++|..+    ++.++.||.
T Consensus        11 ~tvf~qa~sp~~~~l~ag----n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gdG~   82 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAG----NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGDGL   82 (325)
T ss_pred             HHHHHHhhCCcceEEEEe----cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccCce
Confidence            356677899999998884    89999999999865433333333 345556899999999999833    444555799


Q ss_pred             EEEEEcCCCCCC---ccccccccc-----CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEE
Q 018697          145 IFLWSLDCSNKN---AQVQSKQSS-----GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (351)
Q Consensus       145 v~iwd~~~~~~~---~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~  213 (351)
                      |+-|..+...+.   ..+.....+     -....|+++...|..+.++.++.|+.++-||+++|+..+.+. +|   +.+
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~  161 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHS  161 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeee
Confidence            999987743321   111111111     112368999999999999998899999999999999888888 77   888


Q ss_pred             EEc-CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC----------CCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018697          214 VDY-DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLV  282 (351)
Q Consensus       214 ~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  282 (351)
                      ++- +..+  -+++|++||++|+||.++ .+.++.+...          ..+|.+++-+.   .+|++|+ ...+.+|.+
T Consensus       162 vv~R~~~~--qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhL  234 (325)
T KOG0649|consen  162 VVGRNANG--QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHL  234 (325)
T ss_pred             eeecccCc--ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEec
Confidence            888 4444  488999999999999998 6566665421          23466665543   5666655 456899999


Q ss_pred             CCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          283 STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.                   .++..++.- ..+|..+.|..+   .+++++..+.|.-|.+..
T Consensus       235 rs-------------------se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  235 RS-------------------SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             cC-------------------CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeecc
Confidence            98                   666666633 345788888765   577777777777777653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=7.8e-20  Score=153.41  Aligned_cols=257  Identities=13%  Similarity=0.185  Sum_probs=182.6

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCC---CC--CeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS---GG--TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~---~~--~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      +......+..+.+.+....++.++    +++.+.+|++..   ..  .....-.+.+|.++|.|++..++++.+++    
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys----  361 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS----  361 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe----
Confidence            333445666677777777777664    688999999932   11  12233568899999999999999999888    


Q ss_pred             cCCcceEEEEEcccccCCCC-CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      ||-||+|+.|++.....+.+ .........+.+|.+.|+.+++++.... ++.++.||+|++|+...... ..+....  
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~--  437 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPK--  437 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCcc--
Confidence            48999999999873222111 1122445678899999999999998885 77778899999999886444 1111111  


Q ss_pred             CcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc---------eeEEEEcCCCCCcEEEEecCCCeEEE
Q 018697          166 GMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---------HVRNVDYDTKKKHLLVTAADESGIHL  235 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~i  235 (351)
                      .+ ....++.+-..... .++...-+.-.+++++....+..+...         ++.-+.++|... +.+++.+|+.|++
T Consensus       438 e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  438 EH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRF  515 (577)
T ss_pred             cc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceec
Confidence            11 13445555433222 222223333334444444433333311         178889999998 8999999999999


Q ss_pred             EecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +|..+ +.++.....|...++++++.|+| .+|++++.|+.+++|....
T Consensus       516 ~dn~~-~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  516 FDNKT-GKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ccccc-cccchheeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence            99998 77899999999999999999999 9999999999999999977

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1e-16  Score=141.73  Aligned_cols=285  Identities=21%  Similarity=0.373  Sum_probs=201.3

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeee-CCCCCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSS-CPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~-~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+..+.+.+....++.+.    .++.+.+|++....  .....+..+. ..+..+.+ ++++..++...  +..|+.+.+
T Consensus        67 ~i~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~  138 (466)
T COG2319          67 SITSIAFSPDGELLLSGS----SDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLDGTVKL  138 (466)
T ss_pred             eEEEEEECCCCcEEEEec----CCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEecc--CCCCccEEE
Confidence            344444555555555443    56777778777654  1223334433 37777777 78777344432  345899999


Q ss_pred             EEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccccccccCcccceee
Q 018697           96 WQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (351)
Q Consensus        96 w~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (351)
                      |+..         . ......+..|...|..++|+|++.. +++++. |+.+++|++.........     .+|...+.+
T Consensus       139 ~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~  203 (466)
T COG2319         139 WDLS---------TPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSS  203 (466)
T ss_pred             EEec---------CCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEee-----ccCCCceEE
Confidence            9987         3 5777888899999999999999983 555554 999999999862222211     236679999


Q ss_pred             eEECCCCCcEEEe-ecCCeEEEEEcccCCcCc-eeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          174 GAWDPHDVNAVAA-TCESSVQFWDLRSMGKTN-SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       174 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~-~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      ++|+|++..++++ +.|+.|++||...+.... .+. .|  .....|+|++. ++++++.|+.+++|+.+.....+..+.
T Consensus       204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (466)
T COG2319         204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLS  281 (466)
T ss_pred             EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcceeEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEe
Confidence            9999998844444 889999999988666655 233 44  22337999996 788999999999999997444344456


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec--cccceEEEEEeCCCCC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--DYEDSVYGLAWSSREP  327 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~  327 (351)
                      .|...+.++.|+|++ ..+++++.|+.+++||...                   ........  .|...+..+.|.+++.
T Consensus       282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (466)
T COG2319         282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLET-------------------GKLLSSLTLKGHEGPVSSLSFSPDGS  341 (466)
T ss_pred             cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCC-------------------CceEEEeeecccCCceEEEEECCCCC
Confidence            788999999999987 7777788899999998887                   44444443  6777789999943324


Q ss_pred             ceEEEeeeCCeEEEeecCcc
Q 018697          328 WIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .++.++..|+.+++|++...
T Consensus       342 ~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         342 LLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             EEEEeecCCCcEEeeecCCC
Confidence            24444467899999998754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.8e-18  Score=153.98  Aligned_cols=248  Identities=14%  Similarity=0.165  Sum_probs=178.5

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc---ccceeEEEecC-CCCCcEEEEecC
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWWS-SGRHDKLVSIDE  142 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~-~~~~~~~~~~~d  142 (351)
                      .-..+.|+|-...++++    +..-.|+|||.+         ..+.+..+..+   ...|+.+.+-. +...++++++.|
T Consensus      1066 ~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e---------~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----DDRERIRVWDWE---------KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CCceeeecCCCceeEEc----CCcceEEEEecc---------cCceeccccCCCCCCCccceeeeecccchhheeeeccC
Confidence            45567888988888886    445689999998         44555555433   45688888754 445567888999


Q ss_pred             CcEEEEEcCCCC-CCcccccc------cccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018697          143 ENIFLWSLDCSN-KNAQVQSK------QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (351)
Q Consensus       143 ~~v~iwd~~~~~-~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~  212 (351)
                      |.|+||+--... ...++...      ...+..+.-.-+.|.....+|++++.-..|+|||.........+..+.   ++
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence            999999865332 22222111      111111122345788888888888888999999999888777776444   77


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      ++.-+..+.+++++|..||.|++||.|....  .+...+.|...  |..+.+.+.|-..|++|+.||.|++||++...  
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence            7766555545999999999999999997543  56777788877  99999999885569999999999999999821  


Q ss_pred             CCCCcccccCCcccccccceeecccc---ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYE---DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                     .+...+...|.   +..+++..|++.+ ++|+|+. +.|+||++..
T Consensus      1291 ---------------~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 ---------------KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             ---------------ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence                           11111222222   2489999999988 8999988 9999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1e-18  Score=138.19  Aligned_cols=190  Identities=17%  Similarity=0.292  Sum_probs=144.1

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecce---
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---  210 (351)
                      ++++...|.|++||..+++....+.     ++...++.+.|..  ....+.+++.||+|++||+|.......+....   
T Consensus        43 vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             EEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            5666678999999999855444433     3344677777765  34568888999999999999876665554222   


Q ss_pred             --eEEEEcCCCCCcEEEEecC----CCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          211 --VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                        ..+++.+-.+. ++++|.+    +-.|.+||.|...+++..+ ..|...|++++|+|..+.+|+||+.||.|.+||+.
T Consensus       118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence              67777776665 7887763    6789999999877756654 47999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ....                ...+...-.|...|..+.|..++-..+.+-+......+|+++..
T Consensus       197 ~d~E----------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  197 KDNE----------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             CCcc----------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            7211                22333334677789999999887334777788899999998753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=4.7e-18  Score=133.46  Aligned_cols=205  Identities=13%  Similarity=0.161  Sum_probs=161.7

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      -..+|+|.+|++++..++.+    .....|.||....       .+ .+..+++..|...|++++|+|..++ +++++.|
T Consensus         9 ~~~pitchAwn~drt~iAv~----~~~~evhiy~~~~-------~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~d   76 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVS----PNNHEVHIYSMLG-------ADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHD   76 (361)
T ss_pred             ccCceeeeeecCCCceEEec----cCCceEEEEEecC-------CCCceeceehhhhCcceeEEeecCCCCc-eeEccCC
Confidence            34799999999999998885    5777899999872       24 6889999999999999999999986 8888999


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEc
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDY  216 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~  216 (351)
                      ..-++|....+..-...+.  ...+...++++.|+|.++.+++|+....|.||-.+...--   ..+..+.   |.+++|
T Consensus        77 rnayVw~~~~~~~Wkptlv--LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW  154 (361)
T KOG1523|consen   77 RNAYVWTQPSGGTWKPTLV--LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             CCccccccCCCCeecccee--EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence            9999999854443322221  1135568999999999999999999999999988765421   2222222   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEeccc------C-----------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRM------L-----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~------~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      +|++- ++++|+.|+..|+|..--      +           ++.+.++....+.+..+.|+|+| ..|+-.+.|+++.+
T Consensus       155 hpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  155 HPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSF  232 (361)
T ss_pred             cCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEE
Confidence            99997 899999999999986421      0           12334444566889999999999 99999999999999


Q ss_pred             EEcCC
Q 018697          280 WLVST  284 (351)
Q Consensus       280 wd~~~  284 (351)
                      -|...
T Consensus       233 ~da~~  237 (361)
T KOG1523|consen  233 VDAAG  237 (361)
T ss_pred             eecCC
Confidence            98876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3.2e-17  Score=145.00  Aligned_cols=248  Identities=21%  Similarity=0.347  Sum_probs=188.6

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce-eeeeeeccc-cceeEEEe-cCCCCCcE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE-RIAALDAHV-GKINCVLW-WSSGRHDK  136 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~h~-~~v~~~~~-~~~~~~~~  136 (351)
                      ....|...+..+.+.+.+..++..    +.|+.+.+|+...         .. ....+..+. ..+..+.+ .+++...+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~----~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSG----SSDGTIKLWDLDN---------GEKLIKSLEGLHDSSVSKLALSSPDGNSIL  126 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEe----cCCCcEEEEEcCC---------CceeEEEEeccCCCceeeEEEECCCcceEE
Confidence            456799999999999999888875    5899999999882         22 555565543 36777777 77776324


Q ss_pred             EEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEEcccCCcCceeecce--eE
Q 018697          137 LVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH--VR  212 (351)
Q Consensus       137 ~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--v~  212 (351)
                      +.. ..|+.+.+|++.......    .....|...+..++|+|++..+++++. ++.+++|++..+.....+....  +.
T Consensus       127 ~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  202 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPGKLI----RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS  202 (466)
T ss_pred             eccCCCCccEEEEEecCCCeEE----EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence            443 448999999998511111    122345668899999999998888875 9999999999876666666312  99


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCccee-EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      +++|+|+++.++++++.|+.|++||.+. ...+. .+..|.... -..|+|++ .++++++.|+.+++|+...       
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~-------  272 (466)
T COG2319         203 SLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS-------  272 (466)
T ss_pred             EEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecC-------
Confidence            9999999974455558999999999884 55555 577888775 44899999 8999999999999999997       


Q ss_pred             CcccccCCccccccc-ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          292 SESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                  ... +..+..|...+.++.|+|++. .+++++.|+.+++|+....
T Consensus       273 ------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         273 ------------SSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             ------------CCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCC
Confidence                        232 334467788999999999877 6666888899999987643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=1e-19  Score=159.25  Aligned_cols=241  Identities=15%  Similarity=0.269  Sum_probs=179.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +.+.+|.+.|.|+.|...+.++++    |+.|..++||..+         +..++..+++|.+.|+.++.+.++.. +++
T Consensus       184 krLlgH~naVyca~fDrtg~~Iit----gsdd~lvKiwS~e---------t~~~lAs~rGhs~ditdlavs~~n~~-iaa  249 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIIT----GSDDRLVKIWSME---------TARCLASCRGHSGDITDLAVSSNNTM-IAA  249 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEee----cCccceeeeeecc---------chhhhccCCCCccccchhccchhhhh-hhh
Confidence            457899999999999999999998    5899999999988         67889999999999999999887762 555


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-----eeecce---
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-----SIEHAH---  210 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~---  210 (351)
                      ++.|..|++|.+.++.....+     .+|++.|++++|+|-.    +.+.||++++||.+-.....     .+....   
T Consensus       250 aS~D~vIrvWrl~~~~pvsvL-----rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~  320 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD  320 (1113)
T ss_pred             cccCceEEEEecCCCchHHHH-----hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence            588999999999975443322     2678899999999943    77889999999987111000     000000   


Q ss_pred             ------------------------eEEEEcCCCCCcEEEEec-----------CCCeEEEEecccCCcceeEeeCCCCce
Q 018697          211 ------------------------VRNVDYDTKKKHLLVTAA-----------DESGIHLWDLRMLKAPIQELPGHTHWT  255 (351)
Q Consensus       211 ------------------------v~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (351)
                                              ..+++|....- .+++.+           .+-.+.+|++-. ++.++.+.+|...+
T Consensus       321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l-if~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~  398 (1113)
T KOG0644|consen  321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL-IFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV  398 (1113)
T ss_pred             eeeccccccccccccCCcccccchhhHhhhhccce-EEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccce
Confidence                                    22333332221 233322           334567777776 66778888999999


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      ..+.++|-+++...+++.||...|||+-.                   +.+++.+ .+|. .+..-+||++|. .++...
T Consensus       399 yvLd~Hpfn~ri~msag~dgst~iwdi~e-------------------g~pik~y~~gh~-kl~d~kFSqdgt-s~~lsd  457 (1113)
T KOG0644|consen  399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWE-------------------GIPIKHYFIGHG-KLVDGKFSQDGT-SIALSD  457 (1113)
T ss_pred             eeeeecCCCcHhhhhccCCCceEeeeccc-------------------CCcceeeecccc-eeeccccCCCCc-eEecCC
Confidence            99999999988889999999999999987                   5555544 3444 467788999998 566666


Q ss_pred             eCCeEEEeecC
Q 018697          335 YDGRVVVESVK  345 (351)
Q Consensus       335 ~dg~v~vw~~~  345 (351)
                      .-|.++|....
T Consensus       458 ~hgql~i~g~g  468 (1113)
T KOG0644|consen  458 DHGQLYILGTG  468 (1113)
T ss_pred             CCCceEEeccC
Confidence            67888887654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.82  E-value=6.6e-16  Score=132.09  Aligned_cols=294  Identities=12%  Similarity=0.136  Sum_probs=195.6

Q ss_pred             EEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc
Q 018697           31 FLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL  110 (351)
Q Consensus        31 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~  110 (351)
                      +++|+.+.+..+.|+.++++...+.+.......-.....-++++|+++.|.++...+..++.|..|++...     ....
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-----~g~L   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-----TGTL   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----TTEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-----ccee
Confidence            67888877778999999998888877766655556677789999999999887521115789999998831     1244


Q ss_pred             eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-c--------cCcccceeeeEECCCCC
Q 018697          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-S--------SGMLHYLSGGAWDPHDV  181 (351)
Q Consensus       111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~--------~~~~~~v~~~~~~~~~~  181 (351)
                      ..+............++++|+++.++++...+|.|.++++............. .        ........++.++|+++
T Consensus        77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence            55555543445567899999999755555678999999998754333321100 0        01123467889999999


Q ss_pred             cEEEee-cCCeEEEEEcccCCc-C---cee--ecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeC
Q 018697          182 NAVAAT-CESSVQFWDLRSMGK-T---NSI--EHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPG  250 (351)
Q Consensus       182 ~l~~~~-~d~~i~iwd~~~~~~-~---~~~--~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~  250 (351)
                      ++++.. ....|.+|++..... +   ..+  ..+. .+.++|+|++++++++...++.|.+|++......   ++.+..
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            988875 456899999987652 1   112  2222 9999999999977777778899999999832211   222221


Q ss_pred             C------CCceeEEEecCCCCCeEE-EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          251 H------THWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       251 ~------~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                      .      ......|+++|+| ++|+ +...+++|.+|++.....               ..+.+..+.......+.++++
T Consensus       237 ~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g---------------~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATG---------------TLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             CETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTT---------------TEEEEEEEEESSSSEEEEEE-
T ss_pred             ccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCC---------------ceEEEEEEeCCCCCccEEEEe
Confidence            1      1257889999999 5555 455678999999953100               023333333333447899999


Q ss_pred             CCCCceEEEeeeCCeEEEeecC
Q 018697          324 SREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |+|++++++...++.|.+|+++
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEEEe
Confidence            9999666666688999999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=3.5e-17  Score=131.02  Aligned_cols=237  Identities=15%  Similarity=0.146  Sum_probs=170.0

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe-cCC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEE  143 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~d~  143 (351)
                      ...+..+.|+.+...|..    |+.|| .++|+.+         ..............|..+-|+..=  +.+++- .-.
T Consensus         5 ~~ti~~~~~Nqd~~~lsv----Gs~~G-yk~~~~~---------~~~k~~~~~~~~~~IvEmLFSSSL--vaiV~~~qpr   68 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSV----GSKDG-YKIFSCS---------PFEKCFSKDTEGVSIVEMLFSSSL--VAIVSIKQPR   68 (391)
T ss_pred             CcceeeeeeccceeEEEc----cCCCc-eeEEecC---------chHHhhcccCCCeEEEEeecccce--eEEEecCCCc
Confidence            345667778876655444    45664 6788876         222222222223345556666541  123332 234


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--e---eEEEEcCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H---VRNVDYDT  218 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---v~~~~~~~  218 (351)
                      .+++++.+....+.......      +|.++.++.  +.|++.-.+ .|+|||+++.+.+.++...  +   +..+++++
T Consensus        69 ~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~  139 (391)
T KOG2110|consen   69 KLKVVHFKKKTTICEIFFPT------SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN  139 (391)
T ss_pred             eEEEEEcccCceEEEEecCC------ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC
Confidence            68899988655555544433      899998875  456665544 4999999999998888743  3   66777777


Q ss_pred             CCCcEEEEec-CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCcccc
Q 018697          219 KKKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       219 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~  296 (351)
                      .+.++.+-++ ..|.|.+||..+ -+++..+..|.+++.+++|+++| .+|||++..|+ ||+|.+..            
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~------------  205 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE------------  205 (391)
T ss_pred             CCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC------------
Confidence            7765444444 458999999998 66899999999999999999999 99999999995 79999998            


Q ss_pred             cCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          297 ESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                             ++.+..|+-.  ...|.+++|+|+++ +|++.+..++|.++++++..
T Consensus       206 -------G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  206 -------GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -------ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence                   8888888543  34688999999999 89999999999999997643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=1.5e-18  Score=148.72  Aligned_cols=230  Identities=10%  Similarity=0.196  Sum_probs=173.7

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~  146 (351)
                      .|..++|-|||..|+.+     .+..+.+||..         .+..+.++++|++.|.|++|+.+|+. +++++.|..|.
T Consensus        14 ci~d~afkPDGsqL~lA-----Ag~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkr-FASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-----AGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKR-FASGSADKSVI   78 (1081)
T ss_pred             chheeEECCCCceEEEe-----cCCEEEEEeCC---------CcccccccccccceEEEEEEccCCce-eccCCCceeEE
Confidence            89999999999999886     45689999988         67889999999999999999999994 55558899999


Q ss_pred             EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEE
Q 018697          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVT  226 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  226 (351)
                      +|...-.    -++.   ..|...|.++.|+|-...|++++-. ..-+|..........-....+.+++|..||+ +++.
T Consensus        79 ~W~~klE----G~Lk---YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylal  149 (1081)
T KOG1538|consen   79 IWTSKLE----GILK---YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLAL  149 (1081)
T ss_pred             Eeccccc----ceee---eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCc-EEEE
Confidence            9987621    1221   2467799999999998888877633 4568987765433322222399999999999 7899


Q ss_pred             ecCCCeEEEEecccCCcceeEee---CCCCceeEEEecCCC----CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          227 AADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEY----DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      |-.||+|.+-+-.  +++...++   +..++|.+++|+|..    ...++......++.++.+.                
T Consensus       150 G~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls----------------  211 (1081)
T KOG1538|consen  150 GMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS----------------  211 (1081)
T ss_pred             eccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec----------------
Confidence            9999999998654  22222333   467899999999864    2467777777788887776                


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                          ++.+..-+.-.-...++.+.++|. ++..||.|+.+.+|-
T Consensus       212 ----G~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  212 ----GKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFT  250 (1081)
T ss_pred             ----ceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEe
Confidence                344433333333457899999999 778888899888774

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1e-17  Score=150.47  Aligned_cols=285  Identities=18%  Similarity=0.155  Sum_probs=184.3

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEccccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      +++-...++++    ++...|.+|++......-....-......|..+.+-. ++.-|+.+   ++.||.|+||+-....
T Consensus      1072 ~hpf~p~i~~a----d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt---as~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1072 FHPFEPQIAAA----DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT---ASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             ecCCCceeEEc----CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee---eccCceEEEecccccc
Confidence            44444445543    3467788888776542111111112336888888854 33334433   3899999999854211


Q ss_pred             CCCCCCcceeeeeeec-------cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697          103 GQLNSPQLERIAALDA-------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      .    ...+.+....+       ..+.=.-+.|.....+ ++++++-..|+|||..+......+....    ...++++.
T Consensus      1145 ~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s----~t~vTaLS 1215 (1387)
T KOG1517|consen 1145 W----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGS----STLVTALS 1215 (1387)
T ss_pred             c----CCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccCC----Cccceeec
Confidence            0    12233332221       1122244678877665 6666667899999999654444333322    23566665


Q ss_pred             ECC-CCCcEEEeecCCeEEEEEcccCCc--Cceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEecccC-Cccee
Q 018697          176 WDP-HDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQ  246 (351)
Q Consensus       176 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~  246 (351)
                      -+. .|+.+++|..||.|++||.+....  .......|     |..+.+.+.|-.-+++|+.||.|++||+|.. .....
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence            433 367888999999999999986543  21222233     8888998877645999999999999999973 22222


Q ss_pred             EeeCCC--C-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-------ccce
Q 018697          247 ELPGHT--H-WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------YEDS  316 (351)
Q Consensus       247 ~~~~~~--~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  316 (351)
                      .+..|.  + ..+++..++.. ..+|+|+. +.|+||++.-                    +.+..++.       ....
T Consensus      1296 ~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G--------------------~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSG--------------------EQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred             eeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecCh--------------------hhhcccccCcccccCcCCC
Confidence            233333  3 48999999998 99999998 9999999974                    33333322       2245


Q ss_pred             EEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          317 VYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       317 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +.+++|||..- ++|+|+.|..|.||..++.
T Consensus      1354 ~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1354 VSCLAFHPHRL-LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cceeeecchhH-hhhhccCCceEEEeecCCc
Confidence            78999999876 8999999999999998754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.9e-16  Score=135.28  Aligned_cols=246  Identities=13%  Similarity=0.147  Sum_probs=157.6

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      +.++++...++++..   .++.|.+|++.+. +.+.........+....++|+|+++.++++.   ..++.|.+|++.+.
T Consensus        40 l~~spd~~~lyv~~~---~~~~i~~~~~~~~-g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~  112 (330)
T PRK11028         40 MVISPDKRHLYVGVR---PEFRVLSYRIADD-GALTFAAESPLPGSPTHISTDHQGRFLFSAS---YNANCVSVSPLDKD  112 (330)
T ss_pred             EEECCCCCEEEEEEC---CCCcEEEEEECCC-CceEEeeeecCCCCceEEEECCCCCEEEEEE---cCCCeEEEEEECCC
Confidence            456777777777653   4688888999743 3332222223445677899999999999874   45789999998621


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc---cccccCcccceeeeEECC
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---SKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~  178 (351)
                      ..     ..+.+..+ .+.....+++++|+++.++++...++.|.+||+++........   .....  ......+.|+|
T Consensus       113 g~-----~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~p  184 (330)
T PRK11028        113 GI-----PVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHP  184 (330)
T ss_pred             CC-----CCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECC
Confidence            00     01122222 2234467788999999755555678999999998633221100   00001  12466889999


Q ss_pred             CCCcEEEeec-CCeEEEEEcccC--Cc--Cceee---c----ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018697          179 HDVNAVAATC-ESSVQFWDLRSM--GK--TNSIE---H----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       179 ~~~~l~~~~~-d~~i~iwd~~~~--~~--~~~~~---~----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      ++++++++.. ++.|.+||++..  +.  ...+.   .    .. ...+.++|++++++++...++.|.+|++......+
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~  264 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL  264 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence            9999988875 899999999742  21  11111   0    01 34688999999544443457899999997533222


Q ss_pred             eEeeCC---CCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          246 QELPGH---THWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       246 ~~~~~~---~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                       ++..+   ......+.++|+| ++|+++. .+++|.+|++..
T Consensus       265 -~~~~~~~~~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        265 -SFEGHQPTETQPRGFNIDHSG-KYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             -EEeEEEeccccCCceEECCCC-CEEEEEEccCCcEEEEEEcC
Confidence             22212   1245678999999 6666555 489999998864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.9e-18  Score=143.77  Aligned_cols=227  Identities=14%  Similarity=0.197  Sum_probs=157.7

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecC
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCE  189 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  189 (351)
                      ....+.+|++-|.|+.|+.+|. +++++++|-.+.|||.-..    +.+.....+|+..|.++.|-|.  ++.+++|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~----KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEY----KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhc----ceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            3456789999999999999999 3556688999999998842    2333334578899999999885  4567888899


Q ss_pred             CeEEEEEcccCC----------cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-------
Q 018697          190 SSVQFWDLRSMG----------KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-------  249 (351)
Q Consensus       190 ~~i~iwd~~~~~----------~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------  249 (351)
                      ..|+++|+...+          ....+. .|   |..++..|++++.+.++++||+|+-||+|.+..+-....       
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence            999999998522          111111 23   888999999988999999999999999997543222111       


Q ss_pred             --CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-cccc-----------c
Q 018697          250 --GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYE-----------D  315 (351)
Q Consensus       250 --~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~  315 (351)
                        ..--...++..+|..+.+|+.|+.|-..++||.+...+.....+.....+++ ...++.-+ .+|.           .
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~-~~~cv~yf~p~hlkn~~gn~~~~~~  274 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK-DCRCVRYFSPGHLKNSQGNLDRYIT  274 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc-ccchhheecCccccCccccccccee
Confidence              1123467899999999999999999999999966432222222221222211 11222222 1111           1


Q ss_pred             eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          316 SVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .++-++|+|+|.-+|++-+.+ .|+++|+..
T Consensus       275 ~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~  304 (758)
T KOG1310|consen  275 CCTYVTFNPNGTELLVSWGGE-HVYLFDVNE  304 (758)
T ss_pred             eeEEEEECCCCcEEEEeeCCe-EEEEEeecC
Confidence            256789999998677776644 799999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=4.4e-18  Score=145.15  Aligned_cols=246  Identities=15%  Similarity=0.182  Sum_probs=172.5

Q ss_pred             eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC
Q 018697           73 SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC  152 (351)
Q Consensus        73 ~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  152 (351)
                      |+.+..++++-.  .|..|.|.||++.+...-   +.+. +-.+ .....|+.+.|.|-...-++++++||.|++|.+..
T Consensus       587 fcan~~rvAVPL--~g~gG~iai~el~~PGrL---PDgv-~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a  659 (1012)
T KOG1445|consen  587 FCANNKRVAVPL--AGSGGVIAIYELNEPGRL---PDGV-MPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA  659 (1012)
T ss_pred             eeeccceEEEEe--cCCCceEEEEEcCCCCCC---Cccc-cccc-ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence            455555555443  456789999999842111   1111 1122 24567999999997766577889999999999987


Q ss_pred             CCCCcccc--cccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEE
Q 018697          153 SNKNAQVQ--SKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       153 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~  226 (351)
                      +.......  ......|...|+++.|+|-. +.|++++.|-+|++||+++++....+. +|   |..++|+|+|+ .+++
T Consensus       660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~At  737 (1012)
T KOG1445|consen  660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIAT  737 (1012)
T ss_pred             CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceee
Confidence            65443332  23355788899999999964 567788999999999999998877777 66   99999999999 8999


Q ss_pred             ecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCC----eEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          227 AADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      .+.||+|++|..++..+++++-.+.- ..--.|.|.-+| ++++..+.|.    .|.+||.+...               
T Consensus       738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~---------------  801 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD---------------  801 (1012)
T ss_pred             eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc---------------
Confidence            99999999999998677776654322 233567888899 7777666554    67888877611               


Q ss_pred             cccccceee--ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          302 RANSLLNSY--SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       302 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        ..++.+.  ..... +.--.+.+|...++++|-.|..|.+|.+-.
T Consensus       802 --~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  802 --LRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             --CCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecC
Confidence              2222222  11111 111234566666888999999999999854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.8e-17  Score=145.90  Aligned_cols=211  Identities=10%  Similarity=0.102  Sum_probs=140.2

Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      +..|.+||..         . .....+..|...+...+|+|+|+.++.++..  +..|++||+.++.... +.  ...+ 
T Consensus       183 ~~~i~i~d~d---------g-~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~--~~~g-  248 (429)
T PRK01742        183 PYEVRVADYD---------G-FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA--SFRG-  248 (429)
T ss_pred             eEEEEEECCC---------C-CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee--cCCC-
Confidence            5789999986         2 2244566788899999999999974444432  3479999998653221 11  1122 


Q ss_pred             ccceeeeEECCCCCcEEEee-cCCeEEEE--EcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFW--DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                        ....++|+||++.|+.+. .+|.+.||  |+.+++. ..+....  +...+|+|+|+.+++++..++...||+++...
T Consensus       249 --~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        249 --HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             --ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence              234689999999888765 57765555  6655543 3333222  77899999999656666677888999876533


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (351)
                      .....+ .+..  ..+.|+|+| .+|+..+.++ +.+||+..                   ++.......+  ....+.|
T Consensus       326 ~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~-------------------g~~~~lt~~~--~~~~~~~  379 (429)
T PRK01742        326 GGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTS-------------------GSTEVLSSTF--LDESPSI  379 (429)
T ss_pred             CCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCC-------------------CCeEEecCCC--CCCCceE
Confidence            333333 3433  467899999 7887777665 55699876                   3332211122  2356789


Q ss_pred             CCCCCceEEEeeeCCeEEEeec
Q 018697          323 SSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +|+|+ +|+.++.++.+.+|.+
T Consensus       380 sPdG~-~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        380 SPNGI-MIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCC-EEEEEEcCCCceEEEE
Confidence            99999 7888888888887775

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3.6e-17  Score=133.06  Aligned_cols=194  Identities=12%  Similarity=0.156  Sum_probs=146.0

Q ss_pred             eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC
Q 018697          124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  203 (351)
                      .+++|+.+|.. +.+++.||.+++|+.........     ...|...|.++.|+||++.|++.+.| ..+||+.+++..+
T Consensus       148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCE-eeeccccceEEEEecCcchhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            68999999983 66668999999999764322222     22456699999999999999999999 9999999999666


Q ss_pred             ceeecce----eEEEEcCCCC---Cc-EEEEecCCCeEEEEecccCCc----ceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          204 NSIEHAH----VRNVDYDTKK---KH-LLVTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       204 ~~~~~~~----v~~~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      ....+..    ...+.|+.++   .. +++....-+.|+.||+.....    +..+.......|++++.+++| ++++.|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence            5554211    7788888776   32 333334456777777654322    222222234579999999999 999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +.||.|.|++...                   .+.++.. +.|...|+.+.|+|+.+ .+++.+.|....|..+.
T Consensus       300 T~dGsVai~~~~~-------------------lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  300 TMDGSVAIYDAKS-------------------LQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLA  354 (398)
T ss_pred             ccCCcEEEEEece-------------------eeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEe
Confidence            9999999999987                   5555444 57999999999999988 78889989988887765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=4.8e-19  Score=145.47  Aligned_cols=229  Identities=12%  Similarity=0.189  Sum_probs=183.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      ..-..+.++.+|+.++.    ||.-|.|..+|..         +.+....+. -...|.++.|..+.+  ++|......+
T Consensus       130 FGPY~~~ytrnGrhlll----gGrKGHlAa~Dw~---------t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~  193 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLL----GGRKGHLAAFDWV---------TKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYV  193 (545)
T ss_pred             cCCeeeeecCCccEEEe----cCCccceeeeecc---------cceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceE
Confidence            34457888999999998    4899999999988         556655553 346789999998888  5666677899


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcE
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHL  223 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~  223 (351)
                      +|||-.. .....+....      .|..+.|.|..-.|++++..|.++.-|+.+|+.+..+..+.  +..++-+|-+. +
T Consensus       194 yvYD~~G-tElHClk~~~------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-V  265 (545)
T KOG1272|consen  194 YVYDNNG-TELHCLKRHI------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-V  265 (545)
T ss_pred             EEecCCC-cEEeehhhcC------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-e
Confidence            9999762 3333333322      78899999988778888899999999999999998887555  88899999998 8


Q ss_pred             EEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccc
Q 018697          224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA  303 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                      +-+|..+|+|.+|.... ..|+..+..|.++|.+|++.++| +|++|.+.|..++|||++.                   
T Consensus       266 ih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~-------------------  324 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRN-------------------  324 (545)
T ss_pred             EEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecc-------------------
Confidence            88999999999999987 77888888899999999999999 9999999999999999998                   


Q ss_pred             cccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ...+.++.. ..+...+++|..|  +| +++....|.||.
T Consensus       325 ~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~  360 (545)
T KOG1272|consen  325 FYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK  360 (545)
T ss_pred             ccccceeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence            555555543 3356788898765  34 444556799995

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.2e-16  Score=140.84  Aligned_cols=239  Identities=12%  Similarity=0.118  Sum_probs=154.6

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~  121 (351)
                      ..|.+++++..+    ...+..|...+.+.+|+|+++.|+.+.+. ..+..|.+||+..       ...+.+..+.+|  
T Consensus       184 ~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~t-------g~~~~l~~~~g~--  249 (429)
T PRK01742        184 YEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRS-------GARKVVASFRGH--  249 (429)
T ss_pred             EEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEec-CCCcEEEEEeCCC-------CceEEEecCCCc--
Confidence            456666654432    13455688889999999999999876421 2345799999872       122334334443  


Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEE--EcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcc
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLW--SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR  198 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~  198 (351)
                       ...++|+|+|+.+++++..+|.+.||  |+.++. ...+ .    .+...+.+..|+|+++.|+.++ .++...+|++.
T Consensus       250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~l-t----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQL-T----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEee-c----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence             34689999999644444567766655  554332 2221 1    2233577899999999877665 56888888876


Q ss_pred             cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ......... .+ -....|+|+|+ .++..+.++ +.+||+.+ +... .+..+ .....+.|+|+| .+|+.++.++.+
T Consensus       323 ~~~~~~~~l-~~~~~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~  395 (429)
T PRK01742        323 ASGGGASLV-GGRGYSAQISADGK-TLVMINGDN-VVKQDLTS-GSTE-VLSST-FLDESPSISPNG-IMIIYSSTQGLG  395 (429)
T ss_pred             CCCCCeEEe-cCCCCCccCCCCCC-EEEEEcCCC-EEEEECCC-CCeE-EecCC-CCCCCceECCCC-CEEEEEEcCCCc
Confidence            432211111 11 24578999999 565555554 55699876 4322 23222 234568899999 899988889988


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      .+|++...                 .+.....+..|...+...+|+|-
T Consensus       396 ~~l~~~~~-----------------~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        396 KVLQLVSA-----------------DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             eEEEEEEC-----------------CCCceEEccCCCCCCCCcccCCC
Confidence            88876420                 16677778888888899999984

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.7e-15  Score=120.53  Aligned_cols=297  Identities=13%  Similarity=0.148  Sum_probs=205.0

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (351)
                      ...++|+.+..+...|+.|++....+.+....+..+.+.++-|+|+|+++.|.++. ..+.++.|..|.++...     +
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-----G   76 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-----G   76 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-----C
Confidence            46789999988899999999998777777777888899999999999998888874 23457889999887311     1


Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc----ccCc----ccceeeeEECCCC
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ----SSGM----LHYLSGGAWDPHD  180 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~~----~~~v~~~~~~~~~  180 (351)
                      ....+........+.+.++++++++.++.+....|.|.++-++............    ...|    ..-+....+.|++
T Consensus        77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~  156 (346)
T COG2706          77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG  156 (346)
T ss_pred             eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence            2233333323334458899999999755555667999999997654433331111    1111    1126778899999


Q ss_pred             CcEEEee-cCCeEEEEEcccCCcCc----eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC---
Q 018697          181 VNAVAAT-CESSVQFWDLRSMGKTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH---  251 (351)
Q Consensus       181 ~~l~~~~-~d~~i~iwd~~~~~~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  251 (351)
                      ++|++.. .-..|.+|++..+....    .++.+. .+.|.|+|++++..++.--+++|-+|........+..++.+   
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            9999875 34579999999765432    223233 99999999999656666679999999998643344444322   


Q ss_pred             ------CCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          252 ------THWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       252 ------~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                            ..+...|..+|+| ++|.++.. ...|-+|.+...+..               ...+.....+....+.+.+++
T Consensus       237 P~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---------------L~~~~~~~teg~~PR~F~i~~  300 (346)
T COG2706         237 PEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---------------LELVGITPTEGQFPRDFNINP  300 (346)
T ss_pred             ccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---------------EEEEEEeccCCcCCccceeCC
Confidence                  2456789999999 88877654 458888888752110               122222233444478999999


Q ss_pred             CCCceEEEeeeCCeEEEeecCcc
Q 018697          325 REPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .++.++|+.-.+..|.+|..++.
T Consensus       301 ~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         301 SGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCEEEEEccCCCcEEEEEEcCC
Confidence            99955555556677999988753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=2.9e-17  Score=132.89  Aligned_cols=250  Identities=15%  Similarity=0.253  Sum_probs=170.9

Q ss_pred             EeeeecCCCCcc-eEEEeeeeeCCCCEEEEEEeCCCCC-----eE-EEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018697           18 CISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGT-----EL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (351)
Q Consensus        18 ~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~-----~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d   90 (351)
                      ++..+.+..+.. +++.|    +.+..|++|.+.....     .+ ....+..|...|+.+.|+|+|..|++    |+.+
T Consensus        15 pv~s~dfq~n~~~~laT~----G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D~   86 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATA----GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGDG   86 (434)
T ss_pred             ceEEEEeccCcccceecc----cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCCC
Confidence            444455555554 55554    4678899998774321     22 23557789999999999999999888    4899


Q ss_pred             ceEEEEEcccc-------cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018697           91 YGAAIWQIPEL-------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (351)
Q Consensus        91 ~~i~vw~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  163 (351)
                      +.|.+|.....       .....++.+.....+.+|...|..++|+|++.. +++++.|..+++||+..+.....     
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~-----  160 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAI-----  160 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEee-----
Confidence            99999987621       112233456677788999999999999999994 66778899999999997643332     


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--------------------cce-----eEEEEcCC
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------------------HAH-----VRNVDYDT  218 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------------~~~-----v~~~~~~~  218 (351)
                      ..+|...+..++|.|.++++++-+.|...+.+++...+......                    +..     ...++|+|
T Consensus       161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP  240 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP  240 (434)
T ss_pred             ccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC
Confidence            23566689999999999988887777655555543222111100                    000     34455555


Q ss_pred             CCCcEEEEe---------------------------------------------------------------------cC
Q 018697          219 KKKHLLVTA---------------------------------------------------------------------AD  229 (351)
Q Consensus       219 ~~~~~l~~~---------------------------------------------------------------------~~  229 (351)
                      +|. ++++.                                                                     ..
T Consensus       241 dG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt  319 (434)
T KOG1009|consen  241 DGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT  319 (434)
T ss_pred             CCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence            554 32221                                                                     11


Q ss_pred             CCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          230 ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...|++||.++ -.|+... ..|-..++.++|+++| .+|+..+.||...+--++.
T Consensus       320 ~~svyvydtq~-~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  320 KNSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             cceEEEecccc-ccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcc
Confidence            23477888776 3344444 3588899999999999 9999999999877765554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=1.7e-16  Score=124.81  Aligned_cols=244  Identities=15%  Similarity=0.162  Sum_probs=181.3

Q ss_pred             cccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      +.+-..++...+++++...++++.    ..+++.++.............+..|...|+.++|+|..++|+++    +.|.
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc----s~dr   77 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSP----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC----SHDR   77 (361)
T ss_pred             eeeccCceeeeeecCCCceEEecc----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc----cCCC
Confidence            333456778888999999999975    45788998887765456667888999999999999999999885    8999


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .-.||....      ..+.++...+..+....+++.|+|.++. +++++.-..|.||-++..+. .-+.......+...|
T Consensus        78 nayVw~~~~------~~~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENd-WWVsKhikkPirStv  149 (361)
T KOG1523|consen   78 NAYVWTQPS------GGTWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQEND-WWVSKHIKKPIRSTV  149 (361)
T ss_pred             CccccccCC------CCeeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccc-eehhhhhCCccccce
Confidence            999999841      3467777788889999999999999984 77777778899998875332 222222233456689


Q ss_pred             eeeEECCCCCcEEEeecCCeEEEEEcc-----cC-------------CcCceee-cce-eEEEEcCCCCCcEEEEecCCC
Q 018697          172 SGGAWDPHDVNAVAATCESSVQFWDLR-----SM-------------GKTNSIE-HAH-VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~~-------------~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg  231 (351)
                      .++.|+|++-.|++|+.|+..+++..-     ..             +.+..+. .+. +..+.|+|+|. .|+-.+.|.
T Consensus       150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds  228 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDS  228 (361)
T ss_pred             eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCC
Confidence            999999999999999999999998642     11             1112221 122 99999999998 788888999


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .+.+-|...+.+.+.....-.-+..++.|-.+.  .++.++.|
T Consensus       229 ~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~  269 (361)
T KOG1523|consen  229 TVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYD  269 (361)
T ss_pred             ceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCC
Confidence            999999876554455544444777777776543  34444444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.1e-18  Score=136.81  Aligned_cols=195  Identities=13%  Similarity=0.180  Sum_probs=146.6

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFL  147 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~i  147 (351)
                      ..++|+++|..+++    ++.||++|||+.+         ....+.....|..+|.++.|+||++  ++++ +.| ..+|
T Consensus       148 k~vaf~~~gs~lat----gg~dg~lRv~~~P---------s~~t~l~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~V  211 (398)
T KOG0771|consen  148 KVVAFNGDGSKLAT----GGTDGTLRVWEWP---------SMLTILEEIAHHAEVKDLDFSPDGK--FLASIGAD-SARV  211 (398)
T ss_pred             eEEEEcCCCCEeee----ccccceEEEEecC---------cchhhhhhHhhcCccccceeCCCCc--EEEEecCC-ceEE
Confidence            57899999988877    5899999999987         5677777788999999999999999  5555 777 9999


Q ss_pred             EEcCCCCCCcccccccccCcccceeeeEECCCC---CcEEEee--cCCeEEEEEcccCCcC-----ceeecce--eEEEE
Q 018697          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAAT--CESSVQFWDLRSMGKT-----NSIEHAH--VRNVD  215 (351)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~d~~i~iwd~~~~~~~-----~~~~~~~--v~~~~  215 (351)
                      |+.+++.........   +-......+.|+.++   .+.+++.  ..+.|+.||+.....-     .+....+  |.+++
T Consensus       212 W~~~~g~~~a~~t~~---~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  212 WSVNTGAALARKTPF---SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA  288 (398)
T ss_pred             EEeccCchhhhcCCc---ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence            999987444333221   222356667777665   3333332  4567777776543221     1111122  99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+++|+ +++.|+.||.|.|++..+.+.....-+.|...|+.+.|+|+. +++++.+.|..+.+..+..
T Consensus       289 VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  289 VSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence            999999 899999999999999987554444445899999999999999 9999999999999887764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.6e-16  Score=118.52  Aligned_cols=277  Identities=15%  Similarity=0.197  Sum_probs=186.2

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC-------CCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d   90 (351)
                      .+-..+++|...-|++|.    ..+.|.+..+...       .++.......+|+++|..++|.  ...|+++     .|
T Consensus        12 tvf~qa~sp~~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gd   80 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GD   80 (325)
T ss_pred             HHHHHhhCCcceEEEEec----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cC
Confidence            344456677777777774    3577777776631       2333444557999999999998  4566663     67


Q ss_pred             ceEEEEEcccccCCCCCCcceeeee--eecc-----ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAA--LDAH-----VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~--~~~h-----~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  163 (351)
                      |.|+=|...+.....   ..+++-.  ...|     --.|+++-..|..+.+++++ .|+.++-||++++...     ..
T Consensus        81 G~V~gw~W~E~~es~---~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~-----r~  151 (325)
T KOG0649|consen   81 GLVYGWEWNEEEESL---ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQ-----RE  151 (325)
T ss_pred             ceEEEeeehhhhhhc---cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEE-----EE
Confidence            999999876432211   0111111  1112     23688999998887755554 7999999999975422     33


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------e----eEEEEcCCCCCcEEEEecCCC
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H----VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~----v~~~~~~~~~~~~l~~~~~dg  231 (351)
                      ..+|+..+.++.--.....+++|+.||++++||.++++.+..+..-        +    |.+++.+.+   ++++|+ ..
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp  227 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GP  227 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CC
Confidence            4578889999988555667999999999999999999988777521        1    666766544   677554 46


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      .+.+|.++. ..+...+. -..++..+.|..   ..+++++..+.+.-|.+.-                    .+-....
T Consensus       228 ~lslwhLrs-se~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G--------------------vl~a~ip  282 (325)
T KOG0649|consen  228 KLSLWHLRS-SESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG--------------------VLQANIP  282 (325)
T ss_pred             ceeEEeccC-CCceEEEe-cccceeEeeeec---ceEEEeccccceeeeeecc--------------------EEEEecc
Confidence            899999998 66777765 456788888876   4678888888899998863                    3333333


Q ss_pred             cccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          312 DYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ......++..|+..--.++..++..+.+.|+.
T Consensus       283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  283 VESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             CCccceeeecccCCceEEEEecccceeeeeee
Confidence            33334566666543222566677778887764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.7e-17  Score=138.12  Aligned_cols=213  Identities=16%  Similarity=0.191  Sum_probs=155.0

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCC-CcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~~~  136 (351)
                      +.+.||++.|+++.|+.+|..|++    |+.|-.+.|||.-         ..++++.+ .+|.+.|.++.|-|... .++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~S----GSDD~r~ivWd~~---------~~KllhsI~TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLAS----GSDDTRLIVWDPF---------EYKLLHSISTGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhhccccceecceeecCCCCEEee----cCCcceEEeecch---------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence            567899999999999999999988    5899999999987         45555554 68999999999999653 345


Q ss_pred             EEEecCCcEEEEEcCCCCC-----CcccccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCce-----
Q 018697          137 LVSIDEENIFLWSLDCSNK-----NAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNS-----  205 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-----  205 (351)
                      ++++.|..|+++|+.....     ...........|...|.-++-.|++ ..+.+++.||+|+-+|++....-..     
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            5557899999999985221     1112222345677889999999998 4567889999999999996421111     


Q ss_pred             --ee--cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----------------ceeEee-CCC--------
Q 018697          206 --IE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------------PIQELP-GHT--------  252 (351)
Q Consensus       206 --~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~--------  252 (351)
                        +.  ...   ..|+..+|..+++|++|+.|-..++||.|...+                 ++.-+. +|-        
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence              11  011   789999999999999999999999999553211                 122221 121        


Q ss_pred             ---CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          253 ---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       253 ---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                         ..++-+.|+|+|..+|++-+.+ .|+++|+...
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~  305 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNED  305 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCC
Confidence               1146678999996666655544 6999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=137.57  Aligned_cols=198  Identities=18%  Similarity=0.256  Sum_probs=150.4

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ++||.+.+-+-.          .+....+..|.+.+.+-.|+|+|.. +++++.||.|++|.-..  -........    
T Consensus        82 s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsG--MLRStl~Q~----  144 (737)
T KOG1524|consen   82 SNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSG--MLRSTVVQN----  144 (737)
T ss_pred             cCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccc--hHHHHHhhc----
Confidence            789998887743          4556677899999999999999996 77889999999998662  222222211    


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      ..+|+|++|.|+.+.++.+. .+.+.|=.+.....+.... .|   |.++.|++... ++++|++|-..++||-.  +++
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~--G~~  219 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ--GAN  219 (737)
T ss_pred             CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc--Ccc
Confidence            23899999999988776643 4566666666555555555 55   99999999998 99999999999999976  677


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      +..-..|+.+|++++|+|+.  .++.++.+ ++|   ++                           +...+.|..++||+
T Consensus       220 Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~---------------------------~p~~GSifnlsWS~  266 (737)
T KOG1524|consen  220 LFTSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS---------------------------SPRVGSIFNLSWSA  266 (737)
T ss_pred             cccCChhccceeeeeecccc--ceeeeeee-eee---ec---------------------------CCCccceEEEEEcC
Confidence            88888899999999999983  55555532 333   11                           12345799999999


Q ss_pred             CCCceEEEeeeCCeEEE
Q 018697          325 REPWIFASLSYDGRVVV  341 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~v  341 (351)
                      ||. .++.|...|.+.+
T Consensus       267 DGT-Q~a~gt~~G~v~~  282 (737)
T KOG1524|consen  267 DGT-QATCGTSTGQLIV  282 (737)
T ss_pred             CCc-eeeccccCceEEE
Confidence            999 7888888887655

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2e-16  Score=127.59  Aligned_cols=252  Identities=15%  Similarity=0.160  Sum_probs=182.2

Q ss_pred             ecCCcceeeeeeCCCCCc-eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           62 FSHPNEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ......|..++|.-+++. ++.+   .+.+..+..+.+.+..-   .+....+........+|..++.. ++.  ++++-
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~---r~~~~~~~~~~~~E~~~---~s~~~~~~~~~l~~~~I~gl~~~-dg~--Litc~  122 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNA---RSADDDLPKFVIEEFEI---SSSLDDAKTVSLGTKSIKGLKLA-DGT--LITCV  122 (412)
T ss_pred             cchhhhhhhheeecCCceeEeec---cccCcccccccccCCcc---ccccccccccccccccccchhhc-CCE--EEEEe
Confidence            345578888888766553 3333   24566677776662100   00111122334456677776653 344  77777


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecC--CeEEEEEcccCCcCceeecce-------
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCE--SSVQFWDLRSMGKTNSIEHAH-------  210 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~~~~~~~~~~~-------  210 (351)
                      .+|.+.+|....+......+..-  .....+..+.-++..+++++ |+..  ..+.+||+++.+.+..-+...       
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr  200 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR  200 (412)
T ss_pred             cCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence            78999999988544221111111  00125667777777777666 6666  789999999875544433111       


Q ss_pred             ----eEEEEcCCC--CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          211 ----VRNVDYDTK--KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       211 ----v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                          ++++.|-+.  . +.|++++.-+.+++||.+...+|+..+..-+.+++++...|++ +++++|..-+.+..||.+.
T Consensus       201 VPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~  278 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG  278 (412)
T ss_pred             eeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheecccC
Confidence                778888776  4 4799999999999999998788999999889999999999999 9999999999999999998


Q ss_pred             CCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          285 SNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                         +..+.. +++-.+.|+++..+|.++ +++++|-|+.|||+|+++
T Consensus       279 -------------------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  279 -------------------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             -------------------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence                               666655 788889999999999999 999999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=4.7e-16  Score=122.28  Aligned_cols=237  Identities=14%  Similarity=0.119  Sum_probs=159.4

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC----
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE----  142 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d----  142 (351)
                      ...+++|+.|...++++     .|.-.+||+.+         ..+.....+.+.+.+.-+..---.+.+.++++.+    
T Consensus         7 ~~lsvs~NQD~ScFava-----~~~Gfriyn~~---------P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky   72 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVA-----TDTGFRIYNCD---------PFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKY   72 (346)
T ss_pred             ceeEEEEccCCceEEEE-----ecCceEEEecC---------chhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCC
Confidence            44569999998877775     56679999987         2232222222222211111111223334555432    


Q ss_pred             --CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc-cCCcCceeecc---e-eEEEE
Q 018697          143 --ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIEHA---H-VRNVD  215 (351)
Q Consensus       143 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~---~-v~~~~  215 (351)
                        ..|.|||=........+.      ...+|.++.+.++  .|++. .++.|++|... +.+.+..+...   . ..+++
T Consensus        73 ~pNkviIWDD~k~~~i~el~------f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   73 PPNKVIIWDDLKERCIIELS------FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             CCceEEEEecccCcEEEEEE------eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence              579999943322222222      2338999999864  34443 46789999987 44555555422   2 55555


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCc
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSE  293 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  293 (351)
                      -......+..-|-.-|.|+|-|+..... +...+.+|.+.|.+++.+-+| .++||+|..|+ |||||..+         
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~---------  213 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTED---------  213 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCC---------
Confidence            4444442333455679999999986332 357788999999999999999 99999999995 79999999         


Q ss_pred             ccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          294 SLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                ++++..+.-  ....|.+++|||+.. +||.+|+.|+|.|+.+...
T Consensus       214 ----------g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  214 ----------GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ----------CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecC
Confidence                      888888753  235699999999999 8999999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.5e-14  Score=116.13  Aligned_cols=291  Identities=14%  Similarity=0.164  Sum_probs=181.8

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG  103 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~  103 (351)
                      ++.+...+.+|+     .+...+++.++..+   ......-.-.|-.+-|+.  ..++.+.  -.....+++.++.    
T Consensus        13 ~Nqd~~~lsvGs-----~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~--~~qpr~Lkv~~~K----   76 (391)
T KOG2110|consen   13 FNQDSTLLSVGS-----KDGYKIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVS--IKQPRKLKVVHFK----   76 (391)
T ss_pred             eccceeEEEccC-----CCceeEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEe--cCCCceEEEEEcc----
Confidence            444555555553     34455566555433   111111122344445553  3333332  1333568888887    


Q ss_pred             CCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE
Q 018697          104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (351)
Q Consensus       104 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (351)
                           ....+..+ ....+|.+|.++.+.   +++.- ...|+|||+++-.....+....  .+...+.+++.++.+.++
T Consensus        77 -----k~~~ICe~-~fpt~IL~VrmNr~R---LvV~L-ee~IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~yl  144 (391)
T KOG2110|consen   77 -----KKTTICEI-FFPTSILAVRMNRKR---LVVCL-EESIYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYL  144 (391)
T ss_pred             -----cCceEEEE-ecCCceEEEEEccce---EEEEE-cccEEEEecccceeehhhhccC--CCccceEeeccCCCCceE
Confidence                 34444444 345689999988652   44543 3459999999755444443332  233357777777777788


Q ss_pred             EEee--cCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCe-EEEEecccCCcceeEeeCC--CCce
Q 018697          184 VAAT--CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGH--THWT  255 (351)
Q Consensus       184 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~~v  255 (351)
                      +.-+  ..|.|.+||+.+-+++..+. .|   +.+++|+++|. +||++++.|+ ||||.+.+ ++.+.+|..-  ...|
T Consensus       145 Ayp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  145 AYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI  221 (391)
T ss_pred             EecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence            8643  57999999999999988888 66   99999999998 9999999986 89999987 7677777632  2458


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc------------------cccccceeeccccc--
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ------------------RANSLLNSYSDYED--  315 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~--  315 (351)
                      .+++|+|++ .+|++.+..++|++|.+.....+.........++..                  ...+...+.+....  
T Consensus       222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~  300 (391)
T KOG2110|consen  222 YSLSFSPDS-QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGR  300 (391)
T ss_pred             EEEEECCCC-CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCc
Confidence            899999999 899999999999999987643221111111111110                  00001111111111  


Q ss_pred             -eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          316 -SVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       316 -~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                       .+..+.=.+..+ .+..++.||.++.|.++..
T Consensus       301 ~~~~~l~~~~~~~-~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  301 KNICSLSSIQKIP-RVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             cceEEeeccCCCC-EEEEEEcCCeEEEEEcCCC
Confidence             222333234566 7888899999999999764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=4.9e-16  Score=141.81  Aligned_cols=281  Identities=17%  Similarity=0.178  Sum_probs=178.6

Q ss_pred             EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      .....+..|...|..++.++....++++   |+.||+|++|++.+..+..  ...+...++.....++.++...+.+.. 
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~Fvs---gS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~- 1112 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVS---GSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQ- 1112 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEE---ecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCe-
Confidence            4457788899999999998877445554   5899999999998543321  123344455445778999999999986 


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccc----cccccCcccceeeeEECCCCC--cEEEeecCCeEEEEEcccCCcCceeec-
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQ----SKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEH-  208 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~-  208 (351)
                      +++++.||.|.+.+++-........    ..........+...++....+  .++.+...+.|..||++.......++. 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            6666899999999998521111100    000001011222334433322  466777889999999998776655542 


Q ss_pred             -ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCC--CeEEEee--CCCeEEEE
Q 018697          209 -AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYD--GFILSAG--TDSTVNLW  280 (351)
Q Consensus       209 -~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~dg~i~iw  280 (351)
                       .|  |++++.+|.+. +++.|+..|.+.+||+|- +.++..+. ++..++..+..+|-.+  ...++++  ..+.|.+|
T Consensus      1193 ~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence             33  99999999998 899999999999999996 76777765 4567888888877553  4555544  47789999


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccce-eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++..+.+......+ +..+......+.. .-+.+.-......+...+. ++.+|+.|..||.||...
T Consensus      1271 n~~~g~~~~vl~~s-~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWAS-DGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             ecccCcceEEEEcC-CCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCC
Confidence            99985433221111 0000000000000 0012222222333333344 899999999999999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.3e-17  Score=135.55  Aligned_cols=297  Identities=16%  Similarity=0.224  Sum_probs=220.2

Q ss_pred             eccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCC--CceEEEEeec
Q 018697           10 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD--QRIFSTVFST   87 (351)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~~~~~~~   87 (351)
                      +.|+....++..+.++..+..++.|+    .+..+.+|++......+  ....+|...|....|.|..  +.++.    +
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~----~  205 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVT----S  205 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccC----ccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCcee----c
Confidence            34555566788888888888887764    57888889988765433  4556899999999998853  34444    4


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-  166 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-  166 (351)
                      +.||.+++=.+..      ....+....+..|.++|..++.-|+..+.+++++.|+.+.-+|+........+....... 
T Consensus       206 s~dgqvr~s~i~~------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  206 SRDGQVRVSEILE------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             cccCceeeeeecc------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence            8999999988763      112233456778999999999999999888888999999999998765544444222111 


Q ss_pred             cccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCc------Cceeecce--------eEEEEcCCCCCcEEEEecCCC
Q 018697          167 MLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH--------VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg  231 (351)
                      ..-..++++.+|... .+++++.|-.+++||.+.-..      +..+...|        |++++|+.++.. +.+...|-
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSYnDe  358 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASYNDE  358 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-eeeeeccc
Confidence            012578889999776 577888999999999875321      22332222        999999988874 45567778


Q ss_pred             eEEEEecccC-C----------cceeE-eeCCCC--ceeEEEe-cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          232 GIHLWDLRML-K----------APIQE-LPGHTH--WTWAVCC-NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       232 ~i~i~d~~~~-~----------~~~~~-~~~~~~--~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      .|++|.-... +          ..+.. +++|..  .|..+-| -|.. .|+++|+.-|.|.||+-..            
T Consensus       359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t------------  425 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKT------------  425 (559)
T ss_pred             ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecch------------
Confidence            8999953321 1          12233 678864  4666665 6777 9999999999999999998            


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                             ++.+..+.+-...|+||.-+|--+ +||+.|-|..|+||-.
T Consensus       426 -------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  426 -------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP  465 (559)
T ss_pred             -------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence                   888888888767899999999999 9999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.3e-15  Score=133.80  Aligned_cols=237  Identities=13%  Similarity=0.147  Sum_probs=150.5

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  122 (351)
                      .|.+++++..+.    ..+..+...+.+.+|+|+|+.|+.+... +.+..|.+|++..       ...+.+..+.+   .
T Consensus       180 ~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~-------G~~~~l~~~~~---~  244 (429)
T PRK03629        180 ELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLAN-------GAVRQVASFPR---H  244 (429)
T ss_pred             eEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEccCCCC---C
Confidence            555565554332    2234466789999999999998876422 2345788999872       12233333333   3


Q ss_pred             eeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-C--eEEEEEc
Q 018697          123 INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWDL  197 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~  197 (351)
                      +..+.|+|||+.++++...++  .|++||+.++.. ..+..     +...+....|+|+++.|+..+.+ +  .|+++|+
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            456899999997555544444  588999986432 22211     12256788999999998877653 4  4555566


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .+++......... .....|+|+|+.+++++..+  ..|.+||+.. +. ...+.. ........|+|+| .+|+.++.+
T Consensus       319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~  394 (429)
T PRK03629        319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNG-TMVIYSSSQ  394 (429)
T ss_pred             CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCC-CCCCCCceECCCC-CEEEEEEcC
Confidence            6654322222222 66789999999554544444  3588889875 33 344442 2234568899999 778777776


Q ss_pred             Ce---EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          275 ST---VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       275 g~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      +.   +.++++.                    +.....+..|...+...+|+|
T Consensus       395 ~~~~~l~~~~~~--------------------G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        395 GMGSVLNLVSTD--------------------GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCceEEEEEECC--------------------CCCeEECccCCCCcCCcccCC
Confidence            64   6666764                    455566777777889999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=1.6e-16  Score=133.14  Aligned_cols=193  Identities=12%  Similarity=0.207  Sum_probs=144.3

Q ss_pred             CCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecCCeEEEEEcccC-----C--
Q 018697          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSM-----G--  201 (351)
Q Consensus       130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~-----~--  201 (351)
                      |.+-. ++.+-.-|.|.+.|... ....+++.....-....++++.|-|.++.++. +-.+|.+++||..--     .  
T Consensus       183 ~~g~d-llIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  183 PKGLD-LLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCcc-eEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence            34443 67776678999988775 22222222221112348999999997766554 457899999976311     0  


Q ss_pred             ---------------------cCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018697          202 ---------------------KTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (351)
Q Consensus       202 ---------------------~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  258 (351)
                                           ++.......  |+..+|+|||+ +||+.+.||.+||||..+ ...+..++.--+...|+
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCv  338 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCV  338 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEE
Confidence                                 011111111  88999999999 799999999999999987 55666666677889999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC--------------
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS--------------  324 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------  324 (351)
                      +|+||| +||++|++|..|.||.+..                   .+.+..-++|..+|..++|.|              
T Consensus       339 cWSPDG-KyIvtGGEDDLVtVwSf~e-------------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  339 CWSPDG-KYIVTGGEDDLVTVWSFEE-------------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             EEcCCc-cEEEecCCcceEEEEEecc-------------------ceEEEeccccccceeeEeecccccccccccccccc
Confidence            999999 9999999999999999998                   888888899999999999983              


Q ss_pred             ---------------------C------------CCceEEEeeeCCeEEEeecCc
Q 018697          325 ---------------------R------------EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       325 ---------------------~------------~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                           +            -.+.|.+.+.|-.+.+||+..
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence                                 0            124688889999999999975

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-15  Score=119.91  Aligned_cols=246  Identities=15%  Similarity=0.214  Sum_probs=154.6

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      ..+++++....|++++    .+..|++++-+....   .......+..|.+++|-|.+..-++.    +-.+-|.+|...
T Consensus       102 r~~aWhqH~~~fava~----nddvVriy~ksst~p---t~Lks~sQrnvtclawRPlsaselav----gCr~gIciW~~s  170 (445)
T KOG2139|consen  102 RGVAWHQHIIAFAVAT----NDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAWRPLSASELAV----GCRAGICIWSDS  170 (445)
T ss_pred             eeEeechhhhhhhhhc----cCcEEEEeccCCCCC---ceecchhhcceeEEEeccCCcceeee----eecceeEEEEcC
Confidence            3344555666777764    356676666554221   12222345799999999987665554    345679999987


Q ss_pred             cccCCCC-----CCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceee
Q 018697          100 ELYGQLN-----SPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (351)
Q Consensus       100 ~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (351)
                      ...+..-     ......+....+| .+|++++|++||.. ++++ -.|..|.|||.+++...... ...    ...+.-
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~~pL~-~~g----lgg~sl  243 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQKIPLI-PKG----LGGFSL  243 (445)
T ss_pred             cccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCccccc-ccC----CCceee
Confidence            4322110     0011122233445 68999999999995 4444 56899999999986544333 111    126888


Q ss_pred             eEECCCCCcEEEeecCCeEEEEEcccCC-cCc-eeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRSMG-KTN-SIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------  242 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  242 (351)
                      +.|+||+.+|++++-|+..++|...... ... ....+.|...+|+|+|+++|++.+....++-.......         
T Consensus       244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             EEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccc
Confidence            9999999999999999999999654332 222 22222399999999999888877765544433222100         


Q ss_pred             ---cceeEe------eC---CCCceeEEEecCCCCCeEEEeeCCC--------eEEEEEcCC
Q 018697          243 ---APIQEL------PG---HTHWTWAVCCNPEYDGFILSAGTDS--------TVNLWLVST  284 (351)
Q Consensus       243 ---~~~~~~------~~---~~~~v~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~  284 (351)
                         .++..+      .+   -.+.+.+++|+|.| .+|++.-..+        .|.+||.+.
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccc
Confidence               000011      01   13568899999999 8888876543        366778776

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=6e-16  Score=122.33  Aligned_cols=240  Identities=14%  Similarity=0.194  Sum_probs=164.7

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      -+.|.-|.|..+..+++++.   ..++.|.+|++.         +.+-...+....+++.+++|+|+|++++.++.-+-.
T Consensus        48 ldki~yieW~ads~~ilC~~---yk~~~vqvwsl~---------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr  115 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVA---YKDPKVQVWSLV---------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR  115 (447)
T ss_pred             HHHhhheeeeccceeeeeee---eccceEEEEEee---------cceeEEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence            46788899999999888875   789999999998         556666777788899999999999987777788999


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C----------------------------------
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E----------------------------------  189 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d----------------------------------  189 (351)
                      |.+|.+.+.........      ...+..++|+|+|++.+..+. |                                  
T Consensus       116 iTVWSL~t~~~~~~~~p------K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  116 ITVWSLNTQKGYLLPHP------KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             EEEEEeccceeEEeccc------ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            99999986322111111      114577778888776655542 1                                  


Q ss_pred             -CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-------------------------
Q 018697          190 -SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-------------------------  242 (351)
Q Consensus       190 -~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------------------  242 (351)
                       +.+.+||.--.-.+.....+- +..++|+|.++ ++++|+.|+.+|+.+--+.+                         
T Consensus       190 g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  190 GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS  268 (447)
T ss_pred             CcEEEEecchhhheeeeeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence             223445532222222233222 88999999998 89999999988775431110                         


Q ss_pred             ----------------------------------cceeEee------CCCCceeEEEecCCCCCeEEEeeC--CCeEEEE
Q 018697          243 ----------------------------------APIQELP------GHTHWTWAVCCNPEYDGFILSAGT--DSTVNLW  280 (351)
Q Consensus       243 ----------------------------------~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iw  280 (351)
                                                        ..+..++      ...-.+..++|++|. .+++|-..  -+.+-+|
T Consensus       269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~W  347 (447)
T KOG4497|consen  269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLW  347 (447)
T ss_pred             hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEE
Confidence                                              0001111      112245679999998 88887654  3478999


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |++.                   .++...+ ....+|....|+|..+ .|+.+.....+++|...
T Consensus       348 dlq~-------------------l~l~avL-iQk~piraf~WdP~~p-rL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  348 DLQN-------------------LKLHAVL-IQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             echh-------------------hhhhhhh-hhccceeEEEeCCCCc-eEEEEcCCceEEEEcCC
Confidence            9997                   4544444 3456799999999888 56666667789999865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=1.1e-14  Score=124.40  Aligned_cols=273  Identities=10%  Similarity=0.097  Sum_probs=166.6

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.+.+++.....  . ...+......-..+.|+||+++++++    +.|+.|.++|+.         +.+.+.+++.
T Consensus        13 ~~~~~v~viD~~t~~--~-~~~i~~~~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~---------~~~~v~~i~~   76 (369)
T PF02239_consen   13 RGSGSVAVIDGATNK--V-VARIPTGGAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLA---------TGKVVATIKV   76 (369)
T ss_dssp             GGGTEEEEEETTT-S--E-EEEEE-STTEEEEEE-TT-SSEEEEE----ETTSEEEEEETT---------SSSEEEEEE-
T ss_pred             cCCCEEEEEECCCCe--E-EEEEcCCCCceeEEEecCCCCEEEEE----cCCCeEEEEECC---------cccEEEEEec
Confidence            456888888765532  2 23444333333457899999998886    578999999998         6778888865


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc--CcccceeeeEECCCCCcEEEee-cCCeEEEE
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS--GMLHYLSGGAWDPHDVNAVAAT-CESSVQFW  195 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw  195 (351)
                      .. ...+++++++|++++++....+.+.++|..+.+....+......  .....+.++..+|..+.+++.- ..+.|.+.
T Consensus        77 G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   77 GG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred             CC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence            44 46789999999975555577899999999876554443322211  1233677888888888666654 45888888


Q ss_pred             EcccCCcCc--eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----------------------------
Q 018697          196 DLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------------------------  243 (351)
Q Consensus       196 d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------------  243 (351)
                      |....+.+.  .+..+. .....|+|++++++++...+..|-++|.++.+.                             
T Consensus       156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~  235 (369)
T PF02239_consen  156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT  235 (369)
T ss_dssp             ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred             EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence            877654332  333333 889999999997777666677888888765210                             


Q ss_pred             -------------------------ceeEeeCCCCceeEEEecCCCCCeEEEe----eCCCeEEEEEcCCCCCCCCCCcc
Q 018697          244 -------------------------PIQELPGHTHWTWAVCCNPEYDGFILSA----GTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       244 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                                               .++++.....+ ..+..+|++ +++...    ...++|.++|.++          
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~t----------  303 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKT----------  303 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCG----------
T ss_pred             ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcC----------
Confidence                                     11111211122 345668888 777766    4457899999998          


Q ss_pred             cccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEeeeCC-eEEEeecCcccc
Q 018697          295 LVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDG-RVVVESVKPFLS  349 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~~~~~  349 (351)
                               .+.+.++.... ..+..+.|+++|+.+.+|...++ .|.+||..+...
T Consensus       304 ---------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  304 ---------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             ---------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             ---------cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence                     66666664322 34889999999997777777666 899999887543

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=1.2e-16  Score=122.36  Aligned_cols=240  Identities=17%  Similarity=0.244  Sum_probs=165.3

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc------
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY------  102 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~------  102 (351)
                      .|++.|+    +.+.+.+|.+..........  ..|...|+.+.--|++ .+.+-    +.|..+.+|++....      
T Consensus        26 ~rL~sg~----~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~d-~l~tq----gRd~~L~lw~ia~s~~i~i~S   94 (323)
T KOG0322|consen   26 ERLMSGL----SVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPND-SLDTQ----GRDPLLILWTIAYSAFISIHS   94 (323)
T ss_pred             hhhhccc----ccceEEEEEeecCccchhhh--hhccceeeceeecCCc-chhhc----CCCceEEEEEccCcceEEEee
Confidence            3455443    45788888888764432221  1467889999888874 45453    799999999987510      


Q ss_pred             ---------------CCCCC-------------------Ccceeeeee----eccccceeEEEecC-CCCCc-EEEEecC
Q 018697          103 ---------------GQLNS-------------------PQLERIAAL----DAHVGKINCVLWWS-SGRHD-KLVSIDE  142 (351)
Q Consensus       103 ---------------~~~~~-------------------~~~~~~~~~----~~h~~~v~~~~~~~-~~~~~-~~~~~~d  142 (351)
                                     +....                   +....+...    ....+.++|..+.. ++.++ ++++..+
T Consensus        95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEs  174 (323)
T KOG0322|consen   95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYES  174 (323)
T ss_pred             eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccC
Confidence                           00000                   000000000    01234566766533 33433 4455789


Q ss_pred             CcEEEEEcCCCCCCccccc-----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--c--Cceeecce--e
Q 018697          143 ENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--K--TNSIEHAH--V  211 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~--~~~~~~~~--v  211 (351)
                      |.|.+||+.++.....+..     .....|..+|.++.+.+.-..=+.++.+..+..|.+....  .  ...+...+  +
T Consensus       175 ghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv  254 (323)
T KOG0322|consen  175 GHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV  254 (323)
T ss_pred             CeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence            9999999997643332221     1234577799999998766666777888889999887542  1  12222223  9


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV  282 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  282 (351)
                      ..+..-||++ ++++++-|+.||+|..++ .+++..++-|...|++++|+|+. .++|+++.|++|.+|++
T Consensus       255 ~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence            9999999999 999999999999999998 67999999999999999999998 89999999999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.3e-15  Score=120.40  Aligned_cols=248  Identities=13%  Similarity=0.163  Sum_probs=157.5

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCc
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      -.+..++|++.--.++++    ..|..|++|+-.         . .....++ .....|+|++|-|.+...+++++. +-
T Consensus        99 ~dlr~~aWhqH~~~fava----~nddvVriy~ks---------s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~g  163 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVA----TNDDVVRIYDKS---------S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AG  163 (445)
T ss_pred             cceeeEeechhhhhhhhh----ccCcEEEEeccC---------C-CCCceecchhhcceeEEEeccCCcceeeeeec-ce
Confidence            466778999855555553    688899999966         2 3333332 235679999999988765666654 57


Q ss_pred             EEEEEcCCCCCCccc---------ccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce--eE
Q 018697          145 IFLWSLDCSNKNAQV---------QSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH--VR  212 (351)
Q Consensus       145 v~iwd~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--v~  212 (351)
                      |.+|...........         .....++| .+|++++|++||..+++++ .+..|.|||..++..+.....+-  +.
T Consensus       164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s  242 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS  242 (445)
T ss_pred             eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence            999987642221111         11123455 4899999999999999887 67899999999987665553222  89


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      -+.|+||+. +|+++.-|+..++|.........+-.. -.+.|...+|+|+|..+|++.+...  ++|.+...+......
T Consensus       243 lLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  243 LLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFL  318 (445)
T ss_pred             eEEEcCCCC-EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCcccc
Confidence            999999999 677788999999996554232222222 3458999999999966666666554  455555422211111


Q ss_pred             cccccCC--cccccccceeecc---ccceEEEEEeCCCCCceEEEee
Q 018697          293 ESLVESP--NQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       293 ~~~~~~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      +..+.-.  .-.....+....+   -.+++.+++|.|.|. +||+.-
T Consensus       319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~f  364 (445)
T KOG2139|consen  319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIF  364 (445)
T ss_pred             CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEE
Confidence            1000000  0000011111111   135688999999999 666654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.5e-14  Score=128.11  Aligned_cols=296  Identities=13%  Similarity=0.146  Sum_probs=200.1

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCC-CCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      .....++....++.|    ..+|+|.+|+=.. +........+-=|...|.+++|+++|.+|++    ||.++.+.+|.+
T Consensus       209 t~~~~spn~~~~Aa~----d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlS----GG~E~VLv~Wq~  280 (792)
T KOG1963|consen  209 TCVALSPNERYLAAG----DSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLS----GGREGVLVLWQL  280 (792)
T ss_pred             eeEEeccccceEEEe----ccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEee----cccceEEEEEee
Confidence            334455555555554    3568898887554 3444455666668999999999999999999    589999999999


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc------ccCccccee
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLS  172 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~~~~~v~  172 (351)
                      +         +.+ ..-+..-.++|..+.++||+.. ......|+.|.+....+......+....      ......-.+
T Consensus       281 ~---------T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t  349 (792)
T KOG1963|consen  281 E---------TGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT  349 (792)
T ss_pred             c---------CCC-cccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence            8         333 3345556789999999999994 4455679999998875432211111100      111233567


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-----------e--eEEEEcCCCCCcEEEEec--------CC-
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-----------H--VRNVDYDTKKKHLLVTAA--------DE-  230 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~--v~~~~~~~~~~~~l~~~~--------~d-  230 (351)
                      .++++|--+.++..+..+.|.+||+-+.+.+..+...           +  +..++.+..|. +++|.-        .| 
T Consensus       350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDG  428 (792)
T ss_pred             eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCc
Confidence            7889997777888889999999999887766554411           1  77777888876 677654        22 


Q ss_pred             -CeEEEEecccCCcc----eeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          231 -SGIHLWDLRMLKAP----IQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       231 -g~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                       -.+++|......+-    ......|...+...++.+.-+. ..++++.||.+++|-+...+.-         .+....+
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~---------~k~~s~W  499 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI---------YKKSSNW  499 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc---------CcCccce
Confidence             35888887642221    1122367776666665443323 8899999999999988541100         0000114


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+...-.-|..++++++|+.||.  +++++.|+.|.+||..+
T Consensus       500 ~c~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  500 TCKAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EEeeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCC
Confidence            44443344788899999999997  66777899999999876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=2.3e-16  Score=132.22  Aligned_cols=229  Identities=11%  Similarity=0.202  Sum_probs=158.4

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE-cccccCCCCCCcceeeeeeecccccee-EEEecC------CCCC
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ-IPELYGQLNSPQLERIAALDAHVGKIN-CVLWWS------SGRH  134 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~------~~~~  134 (351)
                      .|...|.++.|+.+...+.++     .|..+.+|. +...        ...+  +.-....+. .+..-+      .+..
T Consensus        12 r~~e~vc~v~w~~~eei~~~~-----dDh~~~~~~~~~~~--------s~~~--~~~p~df~pt~~h~~~rs~~~g~~~d   76 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVS-----DDHQIFKWSDVSRD--------SVEV--AKLPDDFVPTDMHLGGRSSGGGKGSD   76 (737)
T ss_pred             ccceeEEeecccccceEEEec-----cCceEEEeecccch--------hhhh--hhCCcccCCccccccccccCCCCCcc
Confidence            466777899999877777663     566655554 4321        0111  111111110 110101      1223


Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce-eE
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR  212 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~-v~  212 (351)
                      .++.++.||.+.+.+-.  .+.....    ..|...+.+-.|+|+|.-|++++.||.|++|.-. |-...++. .+. |.
T Consensus        77 ~~~i~s~DGkf~il~k~--~rVE~sv----~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKS--ARVERSI----SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIR  149 (737)
T ss_pred             eEEEEcCCceEEEeccc--chhhhhh----hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeE
Confidence            47777889999887654  3333332    2566789999999999999999999999999854 43322222 223 99


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      |++|.|+...++++.+.  .+.|=-+.. ...+...+.|.+-|.++.|++.. .++++|+.|-..++||..         
T Consensus       150 c~~W~p~S~~vl~c~g~--h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~---------  216 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQGG--HISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ---------  216 (737)
T ss_pred             EEEECCCCCceEEecCC--eEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc---------
Confidence            99999999877765554  555555554 34566788999999999999999 999999999999999997         


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEE
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVV  340 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  340 (351)
                                 +..+..-..|+-+|++++|.|+ . .++.++. +++|
T Consensus       217 -----------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R  250 (737)
T KOG1524|consen  217 -----------GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTAR  250 (737)
T ss_pred             -----------CcccccCChhccceeeeeeccc-c-ceeeeee-eeee
Confidence                       6788888899999999999999 5 6777764 3444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=6.1e-15  Score=130.51  Aligned_cols=241  Identities=11%  Similarity=0.127  Sum_probs=171.7

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC--cEEEEecCCcEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIF  146 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~d~~v~  146 (351)
                      ....|++|++.++..     .+..|.||...         ++.++..+..|..+++.+.+.|....  .++.++.||.|+
T Consensus        20 ~~avfSnD~k~l~~~-----~~~~V~VyS~~---------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~   85 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLC-----TGNFVKVYSTA---------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR   85 (792)
T ss_pred             cccccccCCcEEEEe-----eCCEEEEEecc---------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence            345789999999886     46699999988         78899999999999999999987763  344668899999


Q ss_pred             EEEcCCCCCCccccccc----------ccC------------------------cc-------------------cceee
Q 018697          147 LWSLDCSNKNAQVQSKQ----------SSG------------------------ML-------------------HYLSG  173 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~----------~~~------------------------~~-------------------~~v~~  173 (351)
                      +||...+.....+....          ...                        +.                   ..-..
T Consensus        86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            99987643221111000          000                        00                   00122


Q ss_pred             eEECCCCCcEEEeecCCeEEEEEcccCCcC---ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc---CCcc
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM---LKAP  244 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~  244 (351)
                      +.+++.+.+ .....+..+.+|....+...   ......|   +++.+++|.++ ++++|..||.|.+|.--.   ....
T Consensus       166 I~~~~~ge~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t  243 (792)
T KOG1963|consen  166 IVDNNSGEF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSET  243 (792)
T ss_pred             EEEcCCceE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccccccccc
Confidence            333333332 22233556778887764411   1111223   78999999999 899999999999996321   1234


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      .+.+.-|...|++++|+++| .+|++|+..+.+.+|.+.+                   ++ ..-++--.++|..+.++|
T Consensus       244 ~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T-------------------~~-kqfLPRLgs~I~~i~vS~  302 (792)
T KOG1963|consen  244 CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLET-------------------GK-KQFLPRLGSPILHIVVSP  302 (792)
T ss_pred             ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecC-------------------CC-cccccccCCeeEEEEEcC
Confidence            56777899999999999999 9999999999999999998                   33 223344467899999999


Q ss_pred             CCCceEEEeeeCCeEEEeecCcc
Q 018697          325 REPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |+. +.+....|+.|.+-...++
T Consensus       303 ds~-~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  303 DSD-LYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             CCC-eEEEEecCceEEEEeccch
Confidence            999 7888888999999887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=8.8e-15  Score=129.21  Aligned_cols=224  Identities=11%  Similarity=0.121  Sum_probs=141.4

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+..+...+.+.+|+|+++.|+.+.+. +....|.+|++.         ..+. ..+..+.+...+..|+|+|+.++++.
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~---------~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLA---------TGQR-ELVASFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECC---------CCCE-EEeccCCCCccCceECCCCCEEEEEE
Confidence            345677889999999999998876422 234579999987         2222 22333344556789999999755555


Q ss_pred             ecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CC--eEEEEEcccCCcCceeecce-eEE
Q 018697          140 IDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES--SVQFWDLRSMGKTNSIEHAH-VRN  213 (351)
Q Consensus       140 ~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~-v~~  213 (351)
                      +.++  .|++||+.++.. ..+.     .+.......+|+|+++.|+.++. ++  .|+++|+.+++.......+. ...
T Consensus       267 s~~g~~~Iy~~d~~~g~~-~~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~  340 (433)
T PRK04922        267 SRDGNPEIYVMDLGSRQL-TRLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR  340 (433)
T ss_pred             eCCCCceEEEEECCCCCe-EECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            5544  699999986532 2221     11223467899999999887764 44  46667776665332222233 557


Q ss_pred             EEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCC
Q 018697          214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHD  288 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~  288 (351)
                      ++|+|+|++++++...++  .|.+||+.. ++ ...+. +........|+|+| ++++..+. .  +.|.+++...    
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~-~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g----  412 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLST-GS-VRTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDG----  412 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCC-CC-eEECC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC----
Confidence            899999995444443333  699999875 43 33443 33345678999999 66555444 2  3566667643    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                                      .....+..+...+...+|+|
T Consensus       413 ----------------~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        413 ----------------RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ----------------CceEEcccCCCCCCCCccCC
Confidence                            34444544555677788887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=2e-15  Score=117.49  Aligned_cols=151  Identities=19%  Similarity=0.278  Sum_probs=107.6

Q ss_pred             eEEEecCCCCCcEEEEec---------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeE
Q 018697          124 NCVLWWSSGRHDKLVSID---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSV  192 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i  192 (351)
                      ..+.|+|+|.++++....         -+...+|.++.............   ..+|.+++|+|+++.+++..  .+..|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEECcCCCEEEEEEccCCccc
Confidence            457899999976665541         13456676654333333332221   23699999999999876553  56799


Q ss_pred             EEEEcccCCcCceeecceeEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018697          193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       193 ~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  269 (351)
                      .+||++ ++.+..+....++.+.|+|+|+ ++++++   ..|.|.+||.++ .+.+...+ | ..++.++|+|+| ++|+
T Consensus        86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdG-r~~~  159 (194)
T PF08662_consen   86 TLYDVK-GKKIFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDG-RYLA  159 (194)
T ss_pred             EEEcCc-ccEeEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCC-CEEE
Confidence            999997 5666666633388999999999 555554   357899999996 55566554 3 357899999999 8888


Q ss_pred             EeeC------CCeEEEEEcC
Q 018697          270 SAGT------DSTVNLWLVS  283 (351)
Q Consensus       270 s~~~------dg~i~iwd~~  283 (351)
                      ++..      |+.++||+..
T Consensus       160 ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEeccceeccccEEEEEec
Confidence            8764      7889999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=7.4e-15  Score=129.70  Aligned_cols=216  Identities=13%  Similarity=0.109  Sum_probs=133.6

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ..|.+||..          +.....+..+...+.+.+|+|+++.+++++.  .+..|++||+.++... .+ . ...+  
T Consensus       184 ~~l~i~D~~----------g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l-~-~~~g--  248 (433)
T PRK04922        184 YALQVADSD----------GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LV-A-SFRG--  248 (433)
T ss_pred             EEEEEECCC----------CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Ee-c-cCCC--
Confidence            458888875          2333455567788999999999997444442  2357999999865332 11 1 1112  


Q ss_pred             cceeeeEECCCCCcEEEe-ecCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCe--EEEEecccCC
Q 018697          169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLK  242 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~  242 (351)
                       ...+.+|+|+++.++.. +.++  .|++||+.+++......... ....+|+|+|+.++++...+|.  |+++|+.. +
T Consensus       249 -~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g  326 (433)
T PRK04922        249 -INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G  326 (433)
T ss_pred             -CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence             34578999999987654 4444  69999998876433222112 5678999999955555545555  55566654 3


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCC-C--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTD-S--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                       ....+..+......++|+|+| .+|+..+.+ +  .|.+||+..                   ++.. .+.. ......
T Consensus       327 -~~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~-------------------g~~~-~Lt~-~~~~~~  383 (433)
T PRK04922        327 -SAERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLST-------------------GSVR-TLTP-GSLDES  383 (433)
T ss_pred             -CeEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCC-------------------CCeE-ECCC-CCCCCC
Confidence             234443334445578999999 666654433 2  689999876                   3332 2221 223456


Q ss_pred             EEeCCCCCceEEEeeeC--CeEEEeecCc
Q 018697          320 LAWSSREPWIFASLSYD--GRVVVESVKP  346 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~d--g~v~vw~~~~  346 (351)
                      ..|+|+|+.++++....  +.|.++++..
T Consensus       384 p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        384 PSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            78999999444444332  3566777653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.6e-13  Score=108.27  Aligned_cols=290  Identities=16%  Similarity=0.173  Sum_probs=177.6

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcc--eeeeeeCCCCCceEEEEeecCC-----cceEE
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE--IWDLSSCPFDQRIFSTVFSTGE-----SYGAA   94 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~~~~~~~~~-----d~~i~   94 (351)
                      +.++.|...|++|+     +...++++..+-......+   .+.+.  +..+-|-  -++|+.+.  |+.     ...|.
T Consensus        11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~---~~~~G~~~veMLfR--~N~laLVG--Gg~~pky~pNkvi   78 (346)
T KOG2111|consen   11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQ---FIDGGFKIVEMLFR--SNYLALVG--GGSRPKYPPNKVI   78 (346)
T ss_pred             EEEccCCceEEEEe-----cCceEEEecCchhhhhhhc---cccCchhhhhHhhh--hceEEEec--CCCCCCCCCceEE
Confidence            67788888999886     5677888888843322111   12222  2222222  33454442  332     24699


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      |||=.         ..+++.++ ....+|.++.+.++    .++.-..+.|+||...+.-+....+....  ....+.++
T Consensus        79 IWDD~---------k~~~i~el-~f~~~I~~V~l~r~----riVvvl~~~I~VytF~~n~k~l~~~et~~--NPkGlC~~  142 (346)
T KOG2111|consen   79 IWDDL---------KERCIIEL-SFNSEIKAVKLRRD----RIVVVLENKIYVYTFPDNPKLLHVIETRS--NPKGLCSL  142 (346)
T ss_pred             EEecc---------cCcEEEEE-EeccceeeEEEcCC----eEEEEecCeEEEEEcCCChhheeeeeccc--CCCceEee
Confidence            99933         45666666 46789999999887    33334568999999985433333222221  01123333


Q ss_pred             EECCCCCcEEEee-cCCeEEEEEcccCCc-Cceeecce---eEEEEcCCCCCcEEEEecCCCe-EEEEecccCCcceeEe
Q 018697          175 AWDPHDVNAVAAT-CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQEL  248 (351)
Q Consensus       175 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~  248 (351)
                      +-+.+...|+.-+ .-|.|.|-|+...+. ...+-.+|   |.|++.+.+|. ++|+++..|+ |||||.++ +.++.++
T Consensus       143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~E~  220 (346)
T KOG2111|consen  143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQEL  220 (346)
T ss_pred             cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEeeee
Confidence            3333333344433 569999999987655 22333366   99999999998 9999999986 89999998 7778887


Q ss_pred             eC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc----c--cccccceeeccccceEEEE
Q 018697          249 PG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN----Q--RANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       249 ~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~v~~~  320 (351)
                      ..  ....|.+++|+|+. .+|+.+|..|+++||.++......... +.-..+.    +  .....+..+.-..+...-+
T Consensus       221 RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~-SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~  298 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDES-SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCII  298 (346)
T ss_pred             ecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCcccc-ccccccccccchhcccceeEEEEEccCCCcEEE
Confidence            62  34679999999999 999999999999999998633222111 0000000    0  0011122222234455667


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeec
Q 018697          321 AWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +|-.+.. -++..+.||.-+-+.+
T Consensus       299 ~fg~~~n-svi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  299 AFGSETN-TVIAICADGSYYKFKF  321 (346)
T ss_pred             EecCCCC-eEEEEEeCCcEEEEEe
Confidence            7877644 4556666787655444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.6e-14  Score=126.37  Aligned_cols=217  Identities=8%  Similarity=0.023  Sum_probs=137.3

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  122 (351)
                      .|.+++.....    .+.+..|...+.+.+|+|+++.|+.+.+. ..+..|.+|++.         .++. ..+..+.+.
T Consensus       183 ~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~---------~g~~-~~l~~~~g~  247 (435)
T PRK05137        183 RLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLE---------TGQR-ELVGNFPGM  247 (435)
T ss_pred             EEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECC---------CCcE-EEeecCCCc
Confidence            55555543322    13455688899999999999998877432 235689999987         2222 344456667


Q ss_pred             eeEEEecCCCCCcEEEEecCCc--EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEc
Q 018697          123 INCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDL  197 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~  197 (351)
                      +...+|+|+|+.++++.+.++.  |++||+.++.. ..+..     +........|+||++.|+..+. +  ..|+++|+
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~-----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTD-----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccC-----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            7889999999975555555554  77778875432 22211     2224567899999999887763 3  36888888


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-  273 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-  273 (351)
                      ..++......... +....|+|+|+.++++....  ..|.+||+.. + ....+. ....+..+.|+|+| +.|+..+. 
T Consensus       322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~  397 (435)
T PRK05137        322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNG-RVIMFFRQT  397 (435)
T ss_pred             CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCC-CEEEEEEcc
Confidence            7654432222122 66789999999544444333  3678888753 2 233333 23356788999999 65554333 


Q ss_pred             C-----CeEEEEEcCC
Q 018697          274 D-----STVNLWLVST  284 (351)
Q Consensus       274 d-----g~i~iwd~~~  284 (351)
                      .     ..+.++|+..
T Consensus       398 ~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        398 PGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CCCCCcceEEEEECCC
Confidence            2     2566777754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.5e-14  Score=127.19  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=135.0

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ..|.+||.+          +...+.+..+...+...+|+|||+.+++++.  .+..+.+|++.++... .+..  ..+  
T Consensus       179 ~~l~~~d~d----------g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~--~~~--  243 (429)
T PRK03629        179 YELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS--FPR--  243 (429)
T ss_pred             eeEEEEcCC----------CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccC--CCC--
Confidence            367788776          1223344556778999999999997554442  3457999999864322 2111  112  


Q ss_pred             cceeeeEECCCCCcEEEee-cCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          169 HYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                       .+....|+|||+.|+... .++  .|++||+.+++......... +....|+|+|+.++++...++...+|.+......
T Consensus       244 -~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        244 -HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             -CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence             345689999999888653 344  58999998876543332222 7889999999955455544555555543322223


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      ...+..+........|+|+| .+|+..+. +  ..|.+||+..                   ++. ..+... .......
T Consensus       323 ~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~-------------------g~~-~~Lt~~-~~~~~p~  380 (429)
T PRK03629        323 PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-QVLTDT-FLDETPS  380 (429)
T ss_pred             eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCC-------------------CCe-EEeCCC-CCCCCce
Confidence            44554444556778999999 66665543 3  3578888876                   332 222211 1234678


Q ss_pred             eCCCCCceEEEeeeCCe---EEEeecCc
Q 018697          322 WSSREPWIFASLSYDGR---VVVESVKP  346 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~---v~vw~~~~  346 (351)
                      |+|||+ .|+..+.++.   +.+++++.
T Consensus       381 ~SpDG~-~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        381 IAPNGT-MVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             ECCCCC-EEEEEEcCCCceEEEEEECCC
Confidence            999999 5666665553   67777653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.4e-14  Score=128.10  Aligned_cols=216  Identities=10%  Similarity=0.063  Sum_probs=136.7

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ..|.++|..          +.....+..|...+.+.+|+|||+.+++++.  .+..|++||+.++... .+ .    .+.
T Consensus       182 ~~l~~~d~d----------g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~----~~~  245 (435)
T PRK05137        182 KRLAIMDQD----------GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-G----NFP  245 (435)
T ss_pred             eEEEEECCC----------CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-e----cCC
Confidence            367777765          2344556678889999999999997555542  3578999999865432 11 1    122


Q ss_pred             cceeeeEECCCCCcEEEe-ecCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCC
Q 018697          169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK  242 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  242 (351)
                      ..+...+|+|+|+.|+.. +.++  .|++||+.+++......... .....|+|+|+.++++...+|  .|+++|+.. +
T Consensus       246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~  324 (435)
T PRK05137        246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S  324 (435)
T ss_pred             CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C
Confidence            256788999999987654 4444  57788988765433222222 667899999985444443444  577778764 3


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCC---CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                       ..+.+..+...+....|+|+| ..|+....+   ..|.+||...                   +. ...+.. ...+..
T Consensus       325 -~~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~-------------------~~-~~~lt~-~~~~~~  381 (435)
T PRK05137        325 -NPRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDG-------------------SG-ERILTS-GFLVEG  381 (435)
T ss_pred             -CeEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCC-------------------Cc-eEeccC-CCCCCC
Confidence             345555445567778999999 666655432   3577788754                   21 122221 123677


Q ss_pred             EEeCCCCCceEEEeeeC-----CeEEEeecCc
Q 018697          320 LAWSSREPWIFASLSYD-----GRVVVESVKP  346 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~d-----g~v~vw~~~~  346 (351)
                      +.|+|||+.++++....     ..+.++++..
T Consensus       382 p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        382 PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            89999999544444433     2577777654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.7e-14  Score=125.77  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=136.3

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      +..+...+.+.+|+|+++.|+.+.+. .....|.+||+.         .++. ..+....+.+.+..|+|+|+.++++.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~---------~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~  259 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLA---------TGRR-RVVANFKGSNSAPAWSPDGRTLAVALS  259 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECC---------CCCE-EEeecCCCCccceEECCCCCEEEEEEc
Confidence            44677889999999999998876422 223469999987         3332 223333455678899999997555556


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEEc--ccCCcCceeecce-eEEEEc
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDL--RSMGKTNSIEHAH-VRNVDY  216 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~-v~~~~~  216 (351)
                      .++...||.++........+..    +........|+|||+.|+..+. ++...+|.+  .+++.......+. ....+|
T Consensus       260 ~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        260 RDGNSQIYTVNADGSGLRRLTQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             cCCCceEEEEECCCCCcEECCC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence            7777666655421111111111    1224566789999999887664 455666655  4443222221222 556889


Q ss_pred             CCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCe--EEEEEcCCCCCCCCC
Q 018697          217 DTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDST--VNLWLVSTSNHDELP  291 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~  291 (351)
                      +|+|++++++...++  .|.+||+.. ++ ...+.. ......+.|+|+| ..|+..+ ..|.  +.+.+..        
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~-~~~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~--------  403 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLAT-GQ-VTALTD-TTRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD--------  403 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCC-CC-eEEccC-CCCccCceECCCC-CEEEEEEecCCCEEEEEEECC--------
Confidence            999995444433333  699999876 43 333432 2345678999999 5555544 4443  3344442        


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                                  +.....+..+.+.+...+|+|-
T Consensus       404 ------------g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        404 ------------GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ------------CCceEEeecCCCCCCCCccCCC
Confidence                        3444445455566778888873

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.2e-15  Score=121.79  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=134.5

Q ss_pred             eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC--CcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (351)
                      +.+.+|.+.|.++.|+.++++ +++++.|..+++|.+...-.  ..+.+......|...|.+++|......+++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            345689999999999999884 56668899999999873211  111111112245678999999998999999999999


Q ss_pred             EEEEEcccCCcCceeecce----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCCCCceeEEEecCCCC
Q 018697          192 VQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~  265 (351)
                      |...|+++.+.+..+....    |..+..+|... +|++.+.++.|.+||.|....+...+  .........+.|+|..+
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999998877776433    99999999975 89999999999999999744343333  23345678899999999


Q ss_pred             CeEEEeeCCCeEEEEEcCCCC
Q 018697          266 GFILSAGTDSTVNLWLVSTSN  286 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~~~  286 (351)
                      .+|++.+..+-+.+||++...
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             eeEEeccccCCCCceeecccc
Confidence            999999999999999998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=5.2e-17  Score=133.64  Aligned_cols=195  Identities=14%  Similarity=0.136  Sum_probs=165.4

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      ....+.++.+|.+ ++.++..|.|..+|..+......+....      .|.++.|..+.++++ ......++|||-. |.
T Consensus       131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~A-VAQK~y~yvYD~~-Gt  201 (545)
T KOG1272|consen  131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFA-VAQKKYVYVYDNN-GT  201 (545)
T ss_pred             CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHH-hhhhceEEEecCC-Cc
Confidence            4567889999997 7778889999999999876655555444      799999987666554 4567899999955 55


Q ss_pred             cCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEE
Q 018697          202 KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (351)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  280 (351)
                      .+..+.... +..+.|-|.. ++|+++++.|.++--|+.. ++.+..+..-.+.+..++-+|-+ .++-+|...|+|.+|
T Consensus       202 ElHClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  202 ELHCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLW  278 (545)
T ss_pred             EEeehhhcCchhhhcccchh-heeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEec
Confidence            666665323 9999999988 4899999999999999998 77888888778889999999999 999999999999999


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      ...+                   .+++..+-.|.++|.+|++.++|. +++|.|.|..++|||++.+.
T Consensus       279 SP~s-------------------kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  279 SPNS-------------------KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             CCCC-------------------cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc
Confidence            9998                   788888889999999999999999 89999999999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=8.3e-15  Score=113.99  Aligned_cols=148  Identities=16%  Similarity=0.287  Sum_probs=107.1

Q ss_pred             eeeEECCCCCcEEEeec----------CCeEEEEEcccC-CcCceeec--ce-eEEEEcCCCCCcEEEE-ecCCCeEEEE
Q 018697          172 SGGAWDPHDVNAVAATC----------ESSVQFWDLRSM-GKTNSIEH--AH-VRNVDYDTKKKHLLVT-AADESGIHLW  236 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~-~~~~~~~~--~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~  236 (351)
                      ..+.|+|+|++|++-..          -+...+|.++.. .....+..  .. |.+++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999998776543          134556666432 23333332  22 9999999999854333 5567899999


Q ss_pred             ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018697          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (351)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      |++  .+++..+.  ...++.+.|+|+| ++|++++.   .|.|.+||.+.                   .+.+.... |
T Consensus        89 d~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~-------------------~~~i~~~~-~  143 (194)
T PF08662_consen   89 DVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRK-------------------KKKISTFE-H  143 (194)
T ss_pred             cCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCC-------------------CEEeeccc-c
Confidence            997  45566664  5678899999999 88888864   46799999997                   77776664 3


Q ss_pred             cceEEEEEeCCCCCceEEEee------eCCeEEEeecCc
Q 018697          314 EDSVYGLAWSSREPWIFASLS------YDGRVVVESVKP  346 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~------~dg~v~vw~~~~  346 (351)
                      . .++.++|+|+|+ +++++.      .|+.++||++..
T Consensus       144 ~-~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  144 S-DATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             C-cEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence            3 378999999999 566655      388999999864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=2.3e-16  Score=124.60  Aligned_cols=221  Identities=15%  Similarity=0.196  Sum_probs=151.9

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd  149 (351)
                      -++|||+|++++++     .+..+.|-|..         +.+..+.+ .--+.|.-+.|..+.-+++.+...++.|.+|+
T Consensus        13 ~c~fSp~g~yiAs~-----~~yrlviRd~~---------tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   13 FCSFSPCGNYIASL-----SRYRLVIRDSE---------TLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             ceeECCCCCeeeee-----eeeEEEEeccc---------hhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence            46899999999886     45577777766         44443333 22456788999999887555558899999999


Q ss_pred             cCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEe
Q 018697          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~  227 (351)
                      +...+-..++...     ...+.+++|+|+|+.++.. .-+-.|.+|.+.+.+....-...+ +..++|+|+|+ +.+..
T Consensus        78 l~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~  151 (447)
T KOG4497|consen   78 LVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAIL  151 (447)
T ss_pred             eecceeEEEeccC-----CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeee
Confidence            9865544444332     2378999999999876655 568999999999876544433334 89999999999 45544


Q ss_pred             cC-CC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          228 AD-ES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       228 ~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      +. |.  .+.+..-.. -..++.+...+-..+.+.|+|+| ..|+         +||.--                   .
T Consensus       152 sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~L-------------------e  201 (447)
T KOG4497|consen  152 SRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVL-------------------E  201 (447)
T ss_pred             ecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchh-------------------h
Confidence            43 21  122211111 12455566666778899999999 6655         676543                   2


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      -.+..+.- .-.+..++|+|.++ +++.|+.|+.+|+-+
T Consensus       202 ykv~aYe~-~lG~k~v~wsP~~q-flavGsyD~~lrvln  238 (447)
T KOG4497|consen  202 YKVYAYER-GLGLKFVEWSPCNQ-FLAVGSYDQMLRVLN  238 (447)
T ss_pred             heeeeeee-ccceeEEEeccccc-eEEeeccchhhhhhc
Confidence            22222221 23588999999998 899999999999855

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.9e-15  Score=125.37  Aligned_cols=263  Identities=11%  Similarity=0.110  Sum_probs=184.9

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCC-CcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGR-HDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~~~  136 (351)
                      ..+..|.+.|..+.|+..|..|++    |+.|..|.+||..         ....... ..+|...|....|.|... .-+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~S----gSDD~~vv~WdW~---------~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLAS----GSDDLQVVVWDWV---------SGSPKLSFESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             hcccCCCCccceeeecccCceeec----cCccceEEeehhh---------ccCcccccccccccchhhhhccCCCCCcCc
Confidence            457889999999999999988888    5899999999988         3344333 357888898888888542 236


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCcCceeecc--e---
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA--H---  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---  210 (351)
                      +.++.||.|++=.+...........  ...|..+|.-++..|+..+ +++++.|+.+.-+|+++..+...+...  +   
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t~r--l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENTKR--LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             eeccccCceeeeeeccccceeccee--cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            6668999999887764443332222  2356678999999988766 778889999999999987655444311  1   


Q ss_pred             ---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----ceeEeeC------CCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPG------HTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                         ...++.+|...+.+++|+.|-.+++||.|...+     ++..+..      ....|++++|+.++ .-|+++-.|-.
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~  359 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDED  359 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccc
Confidence               789999999998999999999999999886432     1333322      23468999999888 44444555777


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccce-eeccccc--eEEEEEe-CCCCCceEEEeeeCCeEEEeecC
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYED--SVYGLAW-SSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~-~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |++|.-..+. ...+....   +.   ...+. .+++|..  .|.++-| -|... ++++|+.=|.|.||+-.
T Consensus       360 IYLF~~~~~~-G~~p~~~s---~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  360 IYLFNKSMGD-GSEPDPSS---PR---EQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             eEEecccccc-CCCCCCCc---ch---hhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecc
Confidence            8888443311 11111000   00   12222 3788854  4666665 57667 89999999999999854

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.67  E-value=4.4e-14  Score=110.20  Aligned_cols=303  Identities=14%  Similarity=0.077  Sum_probs=187.8

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCC--------CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC---CCCceEEEEee
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEE--------NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTVFS   86 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~~   86 (351)
                      +++..+-..-...+++||..+.+.        +++.++.+.+....-.......-...++.+.|+.   ++...++-   
T Consensus        14 ~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~---   90 (339)
T KOG0280|consen   14 PVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLD---   90 (339)
T ss_pred             CCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeee---
Confidence            344444333345888998877665        4566666655322111111122345677777753   33322222   


Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      ....|.|.++.......   ....+++...+.......++.|++.+.. ++++-.+|.+.+-+....   ........+.
T Consensus        91 a~a~G~i~~~r~~~~~s---s~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~---~le~vq~wk~  163 (339)
T KOG0280|consen   91 AHARGQIQLYRNDEDES---SVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEM---VLEKVQTWKV  163 (339)
T ss_pred             ccccceEEEEeecccee---eeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEeccee---eeeecccccc
Confidence            25788999998763100   0011122221112224567889998885 666666788885444321   1111123345


Q ss_pred             cccceeeeEECCCCC-cEEEeecCCeEEEEEcccC-CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          167 MLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      |.-+++-..|+...+ .+++|+.|+.+..||+|.. +.+..-...|   |.++.-+|..+.++++|+.|-.|++||.|+.
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence            666888888876554 5678899999999999933 2332212233   8899888887779999999999999999988


Q ss_pred             CcceeEeeCCCCceeEEEecCCCCCe-EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          242 KAPIQELPGHTHWTWAVCCNPEYDGF-ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      ++|+..-. -.+.|+.+.++|.-... |+++-.. -.+|-+++....+ +             .......+.|.+-+..-
T Consensus       244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e-~-------------~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE-F-------------QIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             cCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc-h-------------heeeeccccccceeecc
Confidence            88887654 35889999999976333 4444444 4778887762211 0             22455667788888888


Q ss_pred             EeCCCCCceEEEee-eCCeEE-EeecCcc
Q 018697          321 AWSSREPWIFASLS-YDGRVV-VESVKPF  347 (351)
Q Consensus       321 ~~~~~~~~~l~s~~-~dg~v~-vw~~~~~  347 (351)
                      .|..... ++|+|+ .|+.++ +|-.-+-
T Consensus       308 DWd~~~~-~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  308 DWDSKDS-FLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccccccc-eeeeeeccccceeeeeeeccC
Confidence            9966545 788887 688855 8865443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.4e-14  Score=122.55  Aligned_cols=240  Identities=12%  Similarity=0.137  Sum_probs=168.1

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc--cceeEEEecCCCCCcEEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV--GKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~  138 (351)
                      -+.|+..-+.|..+|||++++++   |-.-..|++||+.         +  +-..+..|.  ..|.-.-.+.|-.. .+.
T Consensus        47 dfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydla---------n--LSLKFERhlDae~V~feiLsDD~SK-~v~  111 (703)
T KOG2321|consen   47 DFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLA---------N--LSLKFERHLDAEVVDFEILSDDYSK-SVF  111 (703)
T ss_pred             hcCCccccceeEecCCCcEEEEe---cccCCceEEEEcc---------c--ceeeeeecccccceeEEEeccchhh-heE
Confidence            46788899999999999999998   5777899999998         2  223344442  23443344444443 333


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEc
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY  216 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~  216 (351)
                      -..|.+|-+..-.  +....+....      .-.+++++.-..-|+.++....|+-++++.|.-+..+....  ++++..
T Consensus       112 L~~DR~IefHak~--G~hy~~RIP~------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  112 LQNDRTIEFHAKY--GRHYRTRIPK------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             eecCceeeehhhc--CeeeeeecCc------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence            3557777665433  1111111111      34556666555557777777889999999999888887543  999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEee------CCCC-----ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELP------GHTH-----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      ++... +|++|+.+|.|.+||.|. ...+..+.      .|..     .|+++.|+.+| ..++.|+.+|.+.|||++. 
T Consensus       184 n~~hg-Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa-  259 (703)
T KOG2321|consen  184 NEEHG-LLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA-  259 (703)
T ss_pred             cCccc-eEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc-
Confidence            99998 999999999999999997 54454443      2332     38999999998 9999999999999999998 


Q ss_pred             CCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCc
Q 018697          286 NHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKP  346 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~  346 (351)
                                        .+++.. -.+..-+|..+.|.+.+.. .+++. ....++|||-..
T Consensus       260 ------------------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  260 ------------------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT  303 (703)
T ss_pred             ------------------CCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence                              444432 2344568999999876332 34443 456789998653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.8e-14  Score=124.77  Aligned_cols=198  Identities=11%  Similarity=0.181  Sum_probs=121.6

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eec
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATC  188 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  188 (351)
                      ....+..+...+.+.+|+|+|+.+++++..  ...|++||+.++... .+ . ...+   .....+|+||++.|+. .+.
T Consensus       187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l-~-~~~g---~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VV-A-NFKG---SNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Ee-e-cCCC---CccceEECCCCCEEEEEEcc
Confidence            334455677889999999999974444422  346999999865432 11 1 1112   4567899999998875 456


Q ss_pred             CCeEEEEEc--ccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          189 ESSVQFWDL--RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       189 d~~i~iwd~--~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      ++...+|.+  ..+. ...+....  .....|+|||+.+++++..++...+|.+.........+..+........|+|+|
T Consensus       261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG  339 (427)
T PRK02889        261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG  339 (427)
T ss_pred             CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCC
Confidence            776666654  4433 33333222  567889999995555555556677776653232333333233344568899999


Q ss_pred             CCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018697          265 DGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (351)
Q Consensus       265 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  338 (351)
                       .+|+..+.++   .|.+||+..                   ++.. .+... .......|+|+|+.++++....|.
T Consensus       340 -~~Ia~~s~~~g~~~I~v~d~~~-------------------g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        340 -KLLAYISRVGGAFKLYVQDLAT-------------------GQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             -CEEEEEEccCCcEEEEEEECCC-------------------CCeE-EccCC-CCccCceECCCCCEEEEEEecCCC
Confidence             7777655443   699999976                   3322 22221 224678999999954444444444

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.66  E-value=3.8e-14  Score=112.88  Aligned_cols=253  Identities=17%  Similarity=0.280  Sum_probs=175.6

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc------------cceeEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSS  131 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~  131 (351)
                      -.+-|.++.|...|.+|++    |..+|.|.++.-+....    ........++.|.            ..|..+.|.++
T Consensus        24 eadiis~vef~~~Ge~Lat----GdkgGRVv~f~r~~~~~----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLAT----GDKGGRVVLFEREKLYK----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             hhcceeeEEeecccceEee----cCCCCeEEEeecccccc----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            3467889999999999988    47889999987653211    1122333444443            46889999987


Q ss_pred             CCC-cEEEEecCCcEEEEEcCCCCCCc------------------c-cc------------cccccCcccceeeeEECCC
Q 018697          132 GRH-DKLVSIDEENIFLWSLDCSNKNA------------------Q-VQ------------SKQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       132 ~~~-~~~~~~~d~~v~iwd~~~~~~~~------------------~-~~------------~~~~~~~~~~v~~~~~~~~  179 (351)
                      +.. .++.+..|.+|++|.+.......                  . +.            ......|..-|++++++.|
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence            653 35666889999999987432211                  0 00            0012356677899999998


Q ss_pred             CCcEEEeecCCeEEEEEcccCCcCcee---ecce-------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce---e
Q 018697          180 DVNAVAATCESSVQFWDLRSMGKTNSI---EHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---Q  246 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~  246 (351)
                      ...++++ .|-.|.+|.++-......+   ++..       |++..|+|...++++-.++.|+|++.|+|...-+.   +
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            8877664 5788999998854332222   2221       89999999988899999999999999999522110   1


Q ss_pred             Eee------------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018697          247 ELP------------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (351)
Q Consensus       247 ~~~------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (351)
                      .+.            .--..|..+.|++.| +|+++-+. -+|++||+..                  ..+++.+++.|.
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nm------------------e~~pv~t~~vh~  314 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNM------------------EAKPVETYPVHE  314 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccc------------------cCCcceEEeehH
Confidence            111            112467889999999 99997665 4799999976                  256666665553


Q ss_pred             ------------ceE---EEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          315 ------------DSV---YGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       315 ------------~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                  ..|   ..++|+.++. .+.+|+..+.++++++..
T Consensus       315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  315 YLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             hHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCC
Confidence                        122   4688999988 899999999999999643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=1.9e-16  Score=139.19  Aligned_cols=228  Identities=18%  Similarity=0.264  Sum_probs=157.4

Q ss_pred             ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC
Q 018697          110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (351)
Q Consensus       110 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (351)
                      .+.+..+.+|...|.|+.|...|.+ ++++++|..|+||..++......     ..||...++.++.+.+...+++++.|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-----~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-----CRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-----CCCCccccchhccchhhhhhhhcccC
Confidence            3556667899999999999999996 88889999999999886443332     23677899999999988889999999


Q ss_pred             CeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE---ee-CCCCceeEEEecC
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE---LP-GHTHWTWAVCCNP  262 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~-~~~~~v~~~~~~~  262 (351)
                      ..|++|.+..+.++..+. +|   |++++|+|-.     +.+.||++++||.+- ...+..   +. ....-+.++.|..
T Consensus       254 ~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             ceEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccc
Confidence            999999999999988887 66   9999999965     578999999999882 100000   00 0112233333333


Q ss_pred             CCCCeEEEeeCCCeEEEEEcCCCCCCCCCC------------------cccccCCcccccccceeeccccceEEEEEeCC
Q 018697          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPS------------------ESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      .+ .-++|++.|+.-..|.+...-......                  .-....+....+.+++.+.+|...+.-+.++|
T Consensus       327 ~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  327 NG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP  405 (1113)
T ss_pred             cc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence            33 333444444433333222110000000                  00001111122788888899999999999999


Q ss_pred             CCCceEEEeeeCCeEEEeecCcccccC
Q 018697          325 REPWIFASLSYDGRVVVESVKPFLSRK  351 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~~~~~~  351 (351)
                      -++.+..+++.||...|||+-.-.+.|
T Consensus       406 fn~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  406 FNPRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             CCcHhhhhccCCCceEeeecccCCcce
Confidence            888788899999999999997655543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=2e-13  Score=125.12  Aligned_cols=294  Identities=14%  Similarity=0.146  Sum_probs=182.1

Q ss_pred             CCCCEEEEEEeCCCCCe---EEE-EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018697           39 KEENEVHLLRLSSGGTE---LIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~---~~~-~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (351)
                      ..++.+.+|+.....+.   ... .....-...+.++..++.+..++++    +.||.|++.+++......-  .....+
T Consensus      1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~----t~DG~v~~~~id~~~~~~~--~~~~~r 1141 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS----TKDGSVRVLRIDHYNVSKR--VATQVR 1141 (1431)
T ss_pred             cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE----cCCCeEEEEEccccccccc--eeeeee
Confidence            46899999998865443   111 1222245789999999999999885    7999999999984211100  111111


Q ss_pred             eeecc-ccc-eeEEEecCCCCC-cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018697          115 ALDAH-VGK-INCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (351)
Q Consensus       115 ~~~~h-~~~-v~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (351)
                      ....+ .+. |..-+|...... .++.+..-+.|..||+...............   +.|++++.+|.++.++.|+..|.
T Consensus      1142 i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h---G~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1142 IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH---GLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred             cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc---cceeEEEecCCceEEEEecCCce
Confidence            22222 222 333445444333 4666677789999999865444444333322   38999999999999999999999


Q ss_pred             EEEEEcccCCcCceeecce---eEEEEcCCC---CCcEEEEec-CCCeEEEEecccCCcceeEeeCC-C-------Cc--
Q 018697          192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTK---KKHLLVTAA-DESGIHLWDLRMLKAPIQELPGH-T-------HW--  254 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~---v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~-------~~--  254 (351)
                      +.+||+|=+.++.....++   +..+..+|-   ....+.+++ ..+.|.+|++.+ +..-..+... .       .+  
T Consensus      1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred             EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcchhhhcccc
Confidence            9999999888877776555   555555543   333344444 578899999987 4333333211 0       01  


Q ss_pred             ---------eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCC-CCCc--------ccc--------------------
Q 018697          255 ---------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE-LPSE--------SLV--------------------  296 (351)
Q Consensus       255 ---------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~--------~~~--------------------  296 (351)
                               .....+. ++..++++|+.|..|+.||......-. ...+        +..                    
T Consensus      1298 ~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~ 1376 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQ 1376 (1431)
T ss_pred             cCCCCCcccceeeecc-cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhh
Confidence                     1111222 233789999999999999987653220 0000        000                    


Q ss_pred             --cCCc-ccccccce-----eeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          297 --ESPN-QRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       297 --~~~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                        ...+ ....+.+.     .-..|..+|+++++....+.++++++.||.|+||.
T Consensus      1377 tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1377 TVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence              0000 00000011     11247788999998877666999999999999995

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=1.8e-12  Score=110.96  Aligned_cols=255  Identities=11%  Similarity=0.148  Sum_probs=161.4

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEE-EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      .++..+++...+++........+.+..+++.++.+.+.. ............++++|+++.|+++.   -.++.|.++++
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van---y~~g~v~v~~l  116 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN---YGGGSVSVFPL  116 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE---ccCCeEEEEEc
Confidence            345567777777776433236789999999998544443 33333455667899999999999984   56889999999


Q ss_pred             ccccCCCCCCcceeeeeeec-----------cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           99 PELYGQLNSPQLERIAALDA-----------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ...      ...........           ......++.++|++++++++.-....|.+|+++................
T Consensus       117 ~~~------g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  117 DDD------GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             CTT------SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             cCC------cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            831      11111111111           1244678999999997555443456899999986442111111111112


Q ss_pred             ccceeeeEECCCCCcEEEee-cCCeEEEEEcc--cCC--cCceeec------c--eeEEEEcCCCCCcEEEEecCCCeEE
Q 018697          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR--SMG--KTNSIEH------A--HVRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~~~------~--~v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      ......+.|+|+++++++.. .++.|.++++.  .+.  ....+..      +  ....++++|+|++++++......|.
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            23678899999999988776 57899999988  332  1111111      1  1778999999997777777888999


Q ss_pred             EEecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          235 LWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       235 i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                      +|++.....   .+..+.........++++|+| ++|+++. .++.|.+|++..
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeC
Confidence            999953222   233333334557899999999 6666555 577999998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=7.4e-15  Score=123.27  Aligned_cols=200  Identities=13%  Similarity=0.177  Sum_probs=140.7

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeeeEE-----CCCCCcEEEeecCCeEEEE
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAW-----DPHDVNAVAATCESSVQFW  195 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iw  195 (351)
                      .+.....+-.|.++.+.-+  ..+++|+.+........+.. ...+.  ...+-.|     .|.+--++.+-.-|.+.+.
T Consensus       125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~i  200 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLI  200 (636)
T ss_pred             ceeeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEe
Confidence            3444555556665333334  56888888743332222211 11111  1222233     4456668888888999999


Q ss_pred             EcccCCcCceeecc-----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---------------------------
Q 018697          196 DLRSMGKTNSIEHA-----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------------------  242 (351)
Q Consensus       196 d~~~~~~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------  242 (351)
                      |....+....+...     . ++++.|-|.++.+++++-.+|.+++||.....                           
T Consensus       201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence            98764332222211     1 99999999888888889999999999764211                           


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (351)
                      .|+..+..-...|+..+|+||| .+||+.+.||.+||||..+                   .+++...+..-+...+++|
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt-------------------~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT-------------------QELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             CccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccH-------------------HHHHHHHHhhccceEEEEE
Confidence            1333333344578899999999 9999999999999999998                   7888777777778999999


Q ss_pred             CCCCCceEEEeeeCCeEEEeecCc
Q 018697          323 SSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ||||+ +|++|++|-.|.||.+.+
T Consensus       341 SPDGK-yIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  341 SPDGK-YIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             cCCcc-EEEecCCcceEEEEEecc
Confidence            99999 899999999999999864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=3.8e-13  Score=107.26  Aligned_cols=312  Identities=17%  Similarity=0.286  Sum_probs=193.3

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC-e-EEEEeeecC------------CcceeeeeeCCCCCc--
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT-E-LICEGLFSH------------PNEIWDLSSCPFDQR--   79 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~h------------~~~v~~i~~~~~~~~--   79 (351)
                      +.-+..+.++..+.+++.|.    .+|++.++.-....+ . .....+..|            ...|+.|.|.+++..  
T Consensus        25 adiis~vef~~~Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hcceeeEEeecccceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            45567788888899999884    456666665444332 1 111222223            367889999987652  


Q ss_pred             eEEEEeecCCcceEEEEEcccccCCCC-----------------CC---------cceeeeee-eccccceeEEEecCCC
Q 018697           80 IFSTVFSTGESYGAAIWQIPELYGQLN-----------------SP---------QLERIAAL-DAHVGKINCVLWWSSG  132 (351)
Q Consensus        80 l~~~~~~~~~d~~i~vw~~~~~~~~~~-----------------~~---------~~~~~~~~-~~h~~~v~~~~~~~~~  132 (351)
                      ++.    ...|.+|++|.+.+......                 -+         .-.+.+.+ ..|+--|.++.++.|+
T Consensus       101 FLl----stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen  101 FLL----STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             EEE----ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            222    26999999999875321110                 00         00111111 2577789999999999


Q ss_pred             CCcEEEEecCCcEEEEEcCCCCCCccccc---ccccCcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCcC----c
Q 018697          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQS---KQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKT----N  204 (351)
Q Consensus       133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~----~  204 (351)
                      .  .+.+++|-.|-+|+++-..+...+..   ......+.-|++..|+|....+ +-.+..|+|++.|++....-    .
T Consensus       177 E--t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  177 E--TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             c--eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            8  56677889999999986554433322   2222334568889999976554 45678999999999953211    1


Q ss_pred             eeec---c-------e----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC------------c---e
Q 018697          205 SIEH---A-------H----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH------------W---T  255 (351)
Q Consensus       205 ~~~~---~-------~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~---v  255 (351)
                      .+..   +       .    |..+.|+++|+ ++++-. --+|++||+....+|+.+++.|..            .   -
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK  332 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK  332 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence            1110   0       0    88999999999 455332 368999999777888888887753            1   2


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC-Ccccccccceeec--------------cccceEEEE
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES-PNQRANSLLNSYS--------------DYEDSVYGL  320 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~v~~~  320 (351)
                      ..++|+.++ .+++||+.....++|+...+..+.......... +.....++.....              .....+...
T Consensus       333 Fec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~  411 (433)
T KOG1354|consen  333 FECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHT  411 (433)
T ss_pred             eEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhh
Confidence            457888888 899999999999999976654443322111111 1111111111111              112346677


Q ss_pred             EeCCCCCceEEEeeeCCeEEEe
Q 018697          321 AWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      +|+|... .+|.+.. +.+++|
T Consensus       412 aWhp~en-~ia~aat-nnlyif  431 (433)
T KOG1354|consen  412 AWHPKEN-SIAVAAT-NNLYIF  431 (433)
T ss_pred             ccCCccc-eeeeeec-CceEEe
Confidence            8999988 6766664 445554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.5e-13  Score=117.40  Aligned_cols=225  Identities=12%  Similarity=0.135  Sum_probs=134.8

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+..+...+.+..|+|+++.|+.+... .....|.+||+..       ...+.+..+   .+......|+|+|+.++++.
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~-~g~~~L~~~dl~t-------g~~~~lt~~---~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFE-NRKAEIFVQDIYT-------QVREKVTSF---PGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEecCC---CCCcCCeeECCCCCEEEEEE
Confidence            344567788999999999998876422 1223577888762       111222222   23345689999999755555


Q ss_pred             ecCCc--EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEcccCCcCceeecce-eEE
Q 018697          140 IDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VRN  213 (351)
Q Consensus       140 ~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~-v~~  213 (351)
                      ..++.  |+++|+.++.. ..+..     +.......+|+||++.|+..+. +  ..|+++|+.+++.......+. ...
T Consensus       281 ~~~g~~~Iy~~dl~tg~~-~~lt~-----~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~  354 (448)
T PRK04792        281 SKDGQPEIYVVDIATKAL-TRITR-----HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG  354 (448)
T ss_pred             eCCCCeEEEEEECCCCCe-EECcc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence            66664  77778775432 22211     1224567899999998877653 3  357777877665432222233 456


Q ss_pred             EEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcCCCCCCC
Q 018697          214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVSTSNHDE  289 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~  289 (351)
                      .+|+|+|+.++++...++  .|.++|+.. +. ...+... .......|+|+|..++++...++.  +.+++..      
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~------  425 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID------  425 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC------
Confidence            789999996555555555  455567664 32 3333322 223355899999444455555554  5566653      


Q ss_pred             CCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                                    +.....+..+...+...+|+|
T Consensus       426 --------------G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        426 --------------GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --------------CCceEECcCCCCCcCCCccCC
Confidence                          444555555555677888887

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=1.1e-12  Score=116.06  Aligned_cols=215  Identities=12%  Similarity=0.110  Sum_probs=132.2

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~  121 (351)
                      ..|.+++.....    ...+..+...+...+|+|+++.|+.+...+ ....|.+|++.         ..+. ..+..+..
T Consensus       170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~---------~g~~-~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA---------TGQR-EKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECC---------CCCE-EEeecCCC
Confidence            345555543222    133455677889999999999998774322 23579999987         2222 22334556


Q ss_pred             ceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---CeEEEEE
Q 018697          122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD  196 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd  196 (351)
                      .+.+++|+|+++.++++.+.+  ..|++|++.++.. ..+..     +........|+|+++.|+..+..   ..|+++|
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~-----~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d  308 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTN-----GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD  308 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCC-----CCCCCCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            677789999998755554444  4688889876432 22211     11234566899999988876542   3688888


Q ss_pred             cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC---eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +.+++......... ...+.|+|+++ .++.+..++   .|.+||+.. + ....+... .......|+|++ ..|+..+
T Consensus       309 ~~~~~~~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg-~~l~~~~  383 (417)
T TIGR02800       309 ADGGEVRRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNG-RMILYAT  383 (417)
T ss_pred             CCCCCEEEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEE
Confidence            87665432222223 77889999998 455555544   788888875 3 23333322 234567899999 6666555


Q ss_pred             CCC---eEEEEEc
Q 018697          273 TDS---TVNLWLV  282 (351)
Q Consensus       273 ~dg---~i~iwd~  282 (351)
                      .++   .+.+.+.
T Consensus       384 ~~~~~~~l~~~~~  396 (417)
T TIGR02800       384 TRGGRGVLGLVST  396 (417)
T ss_pred             eCCCcEEEEEEEC
Confidence            543   3444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=1.5e-13  Score=111.16  Aligned_cols=205  Identities=15%  Similarity=0.130  Sum_probs=146.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC--C
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--E  143 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~  143 (351)
                      +.|..++..  +..|+++    -.+|.+.+|.......     ...++..+..+ ..+..+.-++..++++++++..  .
T Consensus       106 ~~I~gl~~~--dg~Litc----~~sG~l~~~~~k~~d~-----hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  106 KSIKGLKLA--DGTLITC----VSSGNLQVRHDKSGDL-----HSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccchhhc--CCEEEEE----ecCCcEEEEeccCCcc-----ccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence            344444332  3345554    4788999999873111     02333344333 4566777788888755556777  7


Q ss_pred             cEEEEEcCCCCCCccccccc--ccCc--ccceeeeEECCC--CCcEEEeecCCeEEEEEcccCC-cCceeecce--eEEE
Q 018697          144 NIFLWSLDCSNKNAQVQSKQ--SSGM--LHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG-KTNSIEHAH--VRNV  214 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~--v~~~  214 (351)
                      .+.+||+....+........  .-+.  .-.++++.|.+.  ...+++++.-+.+++||.+.++ ++..+....  +.++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            89999999754333221111  0011  114677889887  6779999999999999999764 555555433  9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...|++. ++++|..-+.+..||+|........+.+-.+.|.++..+|.+ .++++++-|..+||+|+.+
T Consensus       254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence            9999998 799999999999999998443444488889999999999999 9999999999999999998

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.1e-12  Score=114.53  Aligned_cols=226  Identities=12%  Similarity=0.117  Sum_probs=136.0

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+..+...+...+|+|+++.|+.+... .....|.+|++.         .++. ..+....+.+....|+|+|+.++++
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~---------~g~~-~~l~~~~g~~~~~~~SpDG~~la~~  260 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLD---------TGRR-EQITNFEGLNGAPAWSPDGSKLAFV  260 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcC-CCCCEEEEEECC---------CCCE-EEccCCCCCcCCeEECCCCCEEEEE
Confidence            3345677889999999999999876422 123468888887         2222 2222333445578999999975555


Q ss_pred             EecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C--CeEEEEEcccCCcCceeecce-eE
Q 018697          139 SIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VR  212 (351)
Q Consensus       139 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~-v~  212 (351)
                      ...++  .|++||+.++.. ..+..     +........|+|+++.++..+. +  ..|+++|+.+++......... ..
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~-~~lt~-----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQL-SRVTN-----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             EccCCCceEEEEECCCCCe-EEccc-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            54444  688889886432 22211     1224556789999998877653 2  367778887765432222222 55


Q ss_pred             EEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVSTSNHD  288 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~  288 (351)
                      ...|+|+++.++++...++  .|.++|+.. +. ...+.. ........|+|+|..++++...++.  |.+++..     
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-----  406 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-----  406 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-----
Confidence            6789999995555544444  588888875 32 333332 2233456899999444444444444  5555554     


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                                     +.....+..+...+...+|+|
T Consensus       407 ---------------g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        407 ---------------GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ---------------CCceEECcCCCCCcCCCccCC
Confidence                           233333444445567778887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=4.1e-12  Score=108.77  Aligned_cols=242  Identities=13%  Similarity=0.074  Sum_probs=150.0

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ..++.|.+.|..         +.+.+..+......-..+.++||+++ +++++.|+.|.++|+.+.+....+....    
T Consensus        13 ~~~~~v~viD~~---------t~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~----   78 (369)
T PF02239_consen   13 RGSGSVAVIDGA---------TNKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGG----   78 (369)
T ss_dssp             GGGTEEEEEETT---------T-SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred             cCCCEEEEEECC---------CCeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence            578899999987         67788888765555556789999997 4455679999999999866554444333    


Q ss_pred             ccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce---------eEEEEcCCCCCcEEEEecCCCeEEEEe
Q 018697          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWD  237 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (351)
                        ...++++++||++++++. .++.+.++|.++.+.+..+....         +..+..+|..+.++++--+.+.|.+.|
T Consensus        79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence              678899999999999876 68999999999988887776331         667777888875555555668999999


Q ss_pred             cccCCcceeEeeCCCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCCCC------CCC---------------ccc
Q 018697          238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDE------LPS---------------ESL  295 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~------~~~---------------~~~  295 (351)
                      ......................|+|++ ++++. ...+..|-++|.......-      .+.               +..
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~  235 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT  235 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred             eccccccceeeecccccccccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence            876443333333345567789999999 66554 4556688888877642100      000               000


Q ss_pred             c--------------cC-CcccccccceeeccccceEEEEEeCCCCCceEEE---eeeCCeEEEeecCcc
Q 018697          296 V--------------ES-PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVVVESVKPF  347 (351)
Q Consensus       296 ~--------------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~v~vw~~~~~  347 (351)
                      .              .. .+...++.+..+.....+ .-+.-||+++++.+.   +...+.|.++|.++.
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence            0              00 112334555555554444 667889999955554   356689999999875

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.57  E-value=9.1e-13  Score=105.13  Aligned_cols=287  Identities=14%  Similarity=0.206  Sum_probs=187.2

Q ss_pred             eeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           37 SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        37 ~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      ++.++..+++|.--+... .-......-+.+++++.+.++...|++.    -..|++.-+.+.+..+     .....+..
T Consensus        41 ~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e~~~L~vg----~~ngtvtefs~sedfn-----km~~~r~~  110 (404)
T KOG1409|consen   41 SVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSESRRLYVG----QDNGTVTEFALSEDFN-----KMTFLKDY  110 (404)
T ss_pred             EccccceeeeEEeccccc-cCchhhhhCCCCceEeeeeccceEEEEE----EecceEEEEEhhhhhh-----hcchhhhh
Confidence            344556666654333221 1111122345789999999988888885    4778888888775333     34555667


Q ss_pred             eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      ..|...|..+-|+..... +++++.|..+.---.+.+..........      ...++.+.-.  +.+.|...|.|.+-.
T Consensus       111 ~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fvGd~~gqvt~lr  181 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFVGDHSGQITMLK  181 (404)
T ss_pred             hhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEecccccceEEEE
Confidence            789999999999988774 6666778777655555444443333221      2222222211  455555667776666


Q ss_pred             cccC--CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          197 LRSM--GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       197 ~~~~--~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      +...  ..+.++. +|   +.+++|.|... ++.+|..|..+.+||+.-......++.+|...|..+...+-- +.+.++
T Consensus       182 ~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~  258 (404)
T KOG1409|consen  182 LEQNGCQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISC  258 (404)
T ss_pred             EeecCCceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeec
Confidence            5533  2333444 55   99999999887 899999999999999975445567788999999999888877 899999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcc--------------------------------------------------
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQ--------------------------------------------------  301 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------------------------------------  301 (351)
                      +.||.|.+|++..... +.+....+.+.++                                                  
T Consensus       259 ~edg~i~~w~mn~~r~-etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~  337 (404)
T KOG1409|consen  259 GEDGGIVVWNMNVKRV-ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF  337 (404)
T ss_pred             cCCCeEEEEeccceee-cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee
Confidence            9999999999976411 1111111111000                                                  


Q ss_pred             --------------cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          302 --------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       302 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                    ....++..+..-...|+.+.+..+-. +|+++|.|+.|+|||+.+.
T Consensus       338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlg-lLvTsG~~Rvi~iwd~~~v  396 (404)
T KOG1409|consen  338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLG-LLVTSGTDRVIKIWDVRSV  396 (404)
T ss_pred             EEEEecccchhhhcCCCCccccccccccceeEEEhhhhcc-ceeecCCceEEEEEechhh
Confidence                          11122333322223588898888766 8999999999999999764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.57  E-value=6.4e-13  Score=103.79  Aligned_cols=230  Identities=13%  Similarity=0.149  Sum_probs=148.0

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecC---CCCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~---~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                      .-|.+.+|++.+.       ...+..++ ....+.+..+.|.-   ++...++-.-.+|.|.++..........+.....
T Consensus        44 R~Gkl~Lys~~d~-------~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~  116 (339)
T KOG0280|consen   44 RSGKLHLYSLEDM-------KLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS  116 (339)
T ss_pred             eccceEEEeeccc-------ccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence            3457888888732       11111111 22345567777753   3342233345579999998774333222221111


Q ss_pred             cCccc-ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          165 SGMLH-YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       165 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      ..... ...++.|++.+..++++-.+|.+.+-+........  ..+ .|   ....+|+...++++++|++|+.+..||+
T Consensus       117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence            11111 25577899989999999889998865544433222  333 44   7788898888889999999999999999


Q ss_pred             ccCCcceeE-eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceE
Q 018697          239 RMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (351)
Q Consensus       239 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (351)
                      |.++..+.. .+.|...|.+|.-+|..+.+++||+.|-.|++||.++                  .++++..-+. .+.|
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn------------------m~kPl~~~~v-~GGV  256 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN------------------MGKPLFKAKV-GGGV  256 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc------------------ccCccccCcc-ccce
Confidence            966654444 5578999999999987779999999999999999996                  2555544433 3679


Q ss_pred             EEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          318 YGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +.+.++|.-...+..+..-+-.+|-+++
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcCceEEEec
Confidence            9999998543233333333334454444

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.9e-12  Score=108.51  Aligned_cols=271  Identities=11%  Similarity=0.188  Sum_probs=167.6

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEE----ee--cCCcceEEE
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTV----FS--TGESYGAAI   95 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~----~~--~~~d~~i~v   95 (351)
                      ...++++..|++++     +..+.+++.....  .....   ....+.++.|+|.+.+|.+--    ..  ....-.+++
T Consensus        40 ~~~S~~G~lfA~~~-----~~~v~i~~~~~~~--~~lt~---~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v  109 (566)
T KOG2315|consen   40 FAYSNNGRLFAYSD-----NQVVKVFEIATLK--VVLCV---ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV  109 (566)
T ss_pred             EEEcCCCcEEEEEc-----CCeEEEEEccCCc--EEEEe---ccceeeeeeecccccccccccccccccCCCCCCCceee
Confidence            34455666666653     4566666665543  22111   122889999999988775420    00  011234779


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceee--
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG--  173 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~--  173 (351)
                      |+++         +......+..-...-++..|++|..  +++=-..+.+.+|++.........+.      ...+..  
T Consensus       110 ~~ve---------t~~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~kl~------~~~i~~f~  172 (566)
T KOG2315|consen  110 YNVE---------TGVQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHKLS------VSGITMLS  172 (566)
T ss_pred             eeec---------cceehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCccceeeeee------ccceeeEE
Confidence            9988         4344444433333336888888877  33333457788888875322211111      112222  


Q ss_pred             --------------------------------------------------eEECCCCCcEEE-eec-----------CCe
Q 018697          174 --------------------------------------------------GAWDPHDVNAVA-ATC-----------ESS  191 (351)
Q Consensus       174 --------------------------------------------------~~~~~~~~~l~~-~~~-----------d~~  191 (351)
                                                                        +.|++-+.-|++ ++.           +.+
T Consensus       173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~  252 (566)
T KOG2315|consen  173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT  252 (566)
T ss_pred             ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence                                                              345554443322 211           235


Q ss_pred             EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018697          192 VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  269 (351)
                      +++++++...+...+.... |.++.|+|+++.+.++ |-.-..+.|||++  +.++..+.  +++-+++-|+|.| ++++
T Consensus       253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g-~ii~  327 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHG-NIIL  327 (566)
T ss_pred             EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCC-CEEE
Confidence            6666666333333333222 9999999999854433 5566799999998  56776664  6788899999999 8888


Q ss_pred             EeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee------eCCeEE
Q 018697          270 SAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS------YDGRVV  340 (351)
Q Consensus       270 s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~  340 (351)
                      .+|-   -|.|.+||+.+                   .+++..+.....  +-+.|+|||+ +|+++.      .|+.++
T Consensus       328 lAGFGNL~G~mEvwDv~n-------------------~K~i~~~~a~~t--t~~eW~PdGe-~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPN-------------------RKLIAKFKAANT--TVFEWSPDGE-YFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             EeecCCCCCceEEEeccc-------------------hhhccccccCCc--eEEEEcCCCc-EEEEEeccccEEecCCeE
Confidence            7775   56899999998                   788888876544  4588999999 565554      378899


Q ss_pred             EeecCc
Q 018697          341 VESVKP  346 (351)
Q Consensus       341 vw~~~~  346 (351)
                      ||++..
T Consensus       386 iwhytG  391 (566)
T KOG2315|consen  386 IWHYTG  391 (566)
T ss_pred             EEEecC
Confidence            999853

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.1e-12  Score=113.15  Aligned_cols=202  Identities=13%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             eeeeccccceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCC
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCES  190 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~  190 (351)
                      +.+..+...+.+..|+|||+.+++++..+  ..|++||+.++... .+ . ...+   .....+|+||++.|+.. ..++
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t-~~~g---~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV-T-SFPG---INGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee-c-CCCC---CcCCeeECCCCCEEEEEEeCCC
Confidence            34556677889999999999755555433  35888898765321 11 1 1112   34467999999988764 4455


Q ss_pred             --eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCe--EEEEecccCCcceeEeeCCCCceeEEEecCCCC
Q 018697          191 --SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       191 --~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (351)
                        .|+++|+.+++......... ....+|+|+++.++++...++.  |+++|+.. ++ ...+..........+|+|+| 
T Consensus       285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt~~g~~~~~~~~SpDG-  361 (448)
T PRK04792        285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLTFEGEQNLGGSITPDG-  361 (448)
T ss_pred             CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEecCCCCCcCeeECCCC-
Confidence              48888888765432222122 6778999999966565555554  55566654 32 33333223334567899999 


Q ss_pred             CeEEEee-CCCe--EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe--EE
Q 018697          266 GFILSAG-TDST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VV  340 (351)
Q Consensus       266 ~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--v~  340 (351)
                      .+|+..+ .++.  |.++|+..                   ++. ..+.... ......|+|+|+.++.+...++.  ++
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~-------------------g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLET-------------------GAM-QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCC-------------------CCe-EEccCCC-CCCCceECCCCCEEEEEEecCCceEEE
Confidence            5555444 3454  44456654                   222 1222111 12245799999965555555554  55


Q ss_pred             EeecC
Q 018697          341 VESVK  345 (351)
Q Consensus       341 vw~~~  345 (351)
                      +++.+
T Consensus       421 ~~~~~  425 (448)
T PRK04792        421 AVSID  425 (448)
T ss_pred             EEECC
Confidence            66654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.2e-10  Score=94.22  Aligned_cols=253  Identities=13%  Similarity=0.164  Sum_probs=165.5

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+.+.++++...++++. ..+.++.+..+++++..+.+.......-. ..-..++++++++.++++-   -.-+.|.++.
T Consensus        42 ptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An---Y~~g~v~v~p  117 (346)
T COG2706          42 PTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN---YHSGSVSVYP  117 (346)
T ss_pred             CceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE---ccCceEEEEE
Confidence            34566777776666653 34457889999999875655443322222 3338899999999999985   4457899999


Q ss_pred             cccccCCCCCCcceeeeeeeccccc----------eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGK----------INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      +.+.      +..........|.+.          +.+..+.|+++++++..-.--.|.+|++..+..........  ..
T Consensus       118 ~~~d------G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~  189 (346)
T COG2706         118 LQAD------GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KP  189 (346)
T ss_pred             cccC------CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CC
Confidence            8742      122333233345444          88899999999644443223479999999554332221111  11


Q ss_pred             ccceeeeEECCCCCcEEEee-cCCeEEEEEcccC-CcCcee------ec---ce--eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM-GKTNSI------EH---AH--VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~------~~---~~--v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      ......+.|+|++++..+.+ -+++|-+|..... ..+..+      +.   +.  ...+..+|+|+++.++--....|.
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            23678899999999988776 5899999998863 111111      11   11  788999999995555444456899


Q ss_pred             EEecccCCcceeEee---CCCCceeEEEecCCCCCeEEEeeCC-CeEEEEEcCC
Q 018697          235 LWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTD-STVNLWLVST  284 (351)
Q Consensus       235 i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~  284 (351)
                      +|.+......+..+.   .+........|+|.+ .+|+++.++ ..|.+|.+..
T Consensus       270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence            998876544333322   344456788999999 777777664 4799998875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=3.5e-12  Score=112.85  Aligned_cols=214  Identities=11%  Similarity=0.120  Sum_probs=131.2

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ..|.++|..          ......+..+...+...+|+|+|+.+++++..  ...|++||+.++.... +.  .   +.
T Consensus       170 ~~l~~~d~~----------g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~--~---~~  233 (417)
T TIGR02800       170 YELQVADYD----------GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA--S---FP  233 (417)
T ss_pred             ceEEEEcCC----------CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee--c---CC
Confidence            356666654          12234455667778999999999974444432  2579999998653221 11  1   12


Q ss_pred             cceeeeEECCCCCcEEEe-ecC--CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCC
Q 018697          169 HYLSGGAWDPHDVNAVAA-TCE--SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK  242 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d--~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  242 (351)
                      ..+.+++|+|+++.|+.. +.+  ..|++||+.+++......... .....|+|+++.++++...++  .|+++|+.. +
T Consensus       234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~  312 (417)
T TIGR02800       234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-G  312 (417)
T ss_pred             CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence            245678999999987754 333  468889988765332222122 456789999985555544444  577777764 3


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                       ....+..+...+..+.|+|+| .+++..+.++   .|.+||+..                   +.. ..+... .....
T Consensus       313 -~~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~-------------------~~~-~~l~~~-~~~~~  369 (417)
T TIGR02800       313 -EVRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDG-------------------GGE-RVLTDT-GLDES  369 (417)
T ss_pred             -CEEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCC-------------------CCe-EEccCC-CCCCC
Confidence             344555556667888999999 7777776665   788888875                   221 122211 12345


Q ss_pred             EEeCCCCCceEEEeeeCC---eEEEeecC
Q 018697          320 LAWSSREPWIFASLSYDG---RVVVESVK  345 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~dg---~v~vw~~~  345 (351)
                      ..|+|+++. |+..+.++   .+++.+..
T Consensus       370 p~~spdg~~-l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       370 PSFAPNGRM-ILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             ceECCCCCE-EEEEEeCCCcEEEEEEECC
Confidence            689999984 54444433   35555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.6e-12  Score=111.18  Aligned_cols=206  Identities=12%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             eeeeccccceeEEEecCCCCCcEE--EEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKL--VSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-  188 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~--~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  188 (351)
                      ..+......+..-+|+|||+.+.+  ++..+  ..|.+.++..+... .+..  ..+   .....+|+|||+.|+..+. 
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~--~~g---~~~~p~wSPDG~~Laf~s~~  251 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA--LQG---NQLMPTFSPRKKLLAFISDR  251 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec--CCC---CccceEECCCCCEEEEEECC
Confidence            344445566778899999986333  44333  46788888765322 2211  112   3456799999999887653 


Q ss_pred             ----CCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEe--cccCCcceeEeeCCCCceeE
Q 018697          189 ----ESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWD--LRMLKAPIQELPGHTHWTWA  257 (351)
Q Consensus       189 ----d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~v~~  257 (351)
                          +..+..|++..+.  ....+....   ....+|+|||+.++++...+|...+|.  +...+.....+..+...+..
T Consensus       252 ~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~  331 (428)
T PRK01029        252 YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC  331 (428)
T ss_pred             CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence                2234457776531  222222121   467899999995555555667555554  43212234445555566788


Q ss_pred             EEecCCCCCeEEEeeC-C--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          258 VCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       258 ~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      ..|+|+| ..|+..+. +  ..|.+||+..                   ++.. .+......+....|+|||+.++++..
T Consensus       332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~-------------------g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        332 PAWSPDG-KKIAFCSVIKGVRQICVYDLAT-------------------GRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             eeECCCC-CEEEEEEcCCCCcEEEEEECCC-------------------CCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence            9999999 66654433 3  3688999986                   3332 22222234677899999995555554


Q ss_pred             e--CCeEEEeecCc
Q 018697          335 Y--DGRVVVESVKP  346 (351)
Q Consensus       335 ~--dg~v~vw~~~~  346 (351)
                      .  ...|.++++..
T Consensus       391 ~~g~~~L~~vdl~~  404 (428)
T PRK01029        391 NSNESELYLISLIT  404 (428)
T ss_pred             CCCCceEEEEECCC
Confidence            3  35678888764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=9e-12  Score=110.46  Aligned_cols=203  Identities=14%  Similarity=0.152  Sum_probs=122.0

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecC
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCE  189 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  189 (351)
                      ...+..+...+....|+|+|+.+++++..+  ..|.+|++.++... .+.  ...+   ......|+|+++.|+.. ..+
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~--~~~g---~~~~~~~SpDG~~la~~~~~~  264 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT--NFEG---LNGAPAWSPDGSKLAFVLSKD  264 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc--CCCC---CcCCeEECCCCCEEEEEEccC
Confidence            344556777899999999999754554332  46899999865332 111  1112   34568999999988754 334


Q ss_pred             C--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          190 S--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       190 ~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      +  .|++||+.+++......... .....|+|+++.++++...++  .|+++|+.. ++ ...+...........|+|+|
T Consensus       265 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~lt~~~~~~~~~~~Spdg  342 (430)
T PRK00178        265 GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERVTFVGNYNARPRLSADG  342 (430)
T ss_pred             CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccceEECCCC
Confidence            4  68888998775432222122 667889999986556555544  566667654 33 33333222334567899999


Q ss_pred             CCeEEEeeC-CC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC--eE
Q 018697          265 DGFILSAGT-DS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RV  339 (351)
Q Consensus       265 ~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v  339 (351)
                       .+|+..+. ++  .|.++|+..                   ++. ..+.. ........|+|+|+.++++...++  .|
T Consensus       343 -~~i~~~~~~~~~~~l~~~dl~t-------------------g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        343 -KTLVMVHRQDGNFHVAAQDLQR-------------------GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             -CEEEEEEccCCceEEEEEECCC-------------------CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEE
Confidence             66655443 33  577888876                   322 12211 111235689999995555554444  35


Q ss_pred             EEeecC
Q 018697          340 VVESVK  345 (351)
Q Consensus       340 ~vw~~~  345 (351)
                      .++++.
T Consensus       401 ~~~~~~  406 (430)
T PRK00178        401 MLVSIN  406 (430)
T ss_pred             EEEECC
Confidence            555554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.3e-11  Score=105.04  Aligned_cols=273  Identities=11%  Similarity=0.115  Sum_probs=179.0

Q ss_pred             eeecCCCCcceEEE-eeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC--cceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           20 SDVKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHP--NEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        20 ~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      +.+..++++.-++. |+.    .-.|.++++....-+     +..|.  ..|.-.-.+.|-..++..    -.|.+|.+.
T Consensus        55 t~ik~s~DGqY~lAtG~Y----KP~ikvydlanLSLK-----FERhlDae~V~feiLsDD~SK~v~L----~~DR~IefH  121 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTY----KPQIKVYDLANLSLK-----FERHLDAEVVDFEILSDDYSKSVFL----QNDRTIEFH  121 (703)
T ss_pred             ceeEecCCCcEEEEeccc----CCceEEEEcccceee-----eeecccccceeEEEeccchhhheEe----ecCceeeeh
Confidence            34566777754443 432    356888888875422     22343  334444445554444443    367776655


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      ...           ..-..++. ...-..++++.-.-.+++++ ....|+-++++.+.-...+...     ...++++..
T Consensus       122 ak~-----------G~hy~~RI-P~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~i  183 (703)
T KOG2321|consen  122 AKY-----------GRHYRTRI-PKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD-----SGELNVVSI  183 (703)
T ss_pred             hhc-----------Ceeeeeec-CcCCccccccCCCccEEEee-cCcceEEEEccccccccccccc-----cccceeeee
Confidence            432           11111111 12234455554443334444 4567888888865444333222     248999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCceeecc-----e--------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-----H--------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      ++....|++|+.+|.|.+||.+....+..+...     +        |+++.|+.+|- -+++|..+|.+.|||+|. .+
T Consensus       184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa-~~  261 (703)
T KOG2321|consen  184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA-SK  261 (703)
T ss_pred             cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc-CC
Confidence            999999999999999999999987765554311     1        89999999886 689999999999999998 55


Q ss_pred             ceeEe-eCCCCceeEEEecCCCC-CeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          244 PIQEL-PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       244 ~~~~~-~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      |+..- .+..-+|..+.|.+.+. ..++|. ....++|||-..                   ++......... .++.++
T Consensus       262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~-------------------Gk~~asiEpt~-~lND~C  320 (703)
T KOG2321|consen  262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT-------------------GKPMASIEPTS-DLNDFC  320 (703)
T ss_pred             ceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc-------------------CCceeeccccC-CcCcee
Confidence            54433 34456899999977642 445544 356899999998                   78777776544 499999


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          322 WSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +-|++. +++++-.+..+..|=++..
T Consensus       321 ~~p~sG-m~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  321 FVPGSG-MFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             eecCCc-eEEEecCCCcceeEEcccc
Confidence            999887 8999998888877766643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.48  E-value=3.4e-12  Score=108.81  Aligned_cols=186  Identities=12%  Similarity=0.175  Sum_probs=145.9

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE------C--------------CCCCcEEEeecCCeEEEE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW------D--------------PHDVNAVAATCESSVQFW  195 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~------~--------------~~~~~l~~~~~d~~i~iw  195 (351)
                      ++.+..||.+++|+..++.....+.....  ..+...+..|      +              .+...++-|...|.|.+|
T Consensus         8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    8 FALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             EeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            44457799999999987654444332221  1112233333      1              123456778889999999


Q ss_pred             EcccCCcCceee-cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          196 DLRSMGKTNSIE-HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       196 d~~~~~~~~~~~-~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      +...++....+. ..|   |.++.++.+-. .|.+++.|+.+..|+... .+.+..+......+.+++.+||+ ..++++
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~l~~a  162 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KILLTA  162 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC-CEEEec
Confidence            999998888877 334   88998888877 899999999999999987 77788888888899999999999 888888


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC-----CCceEEEeeeCCeEEEeecCc
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR-----EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.  +|++||+++                   .+.+..|.+|.++|++++|.-+     |.++|.+...+..+.+|-+..
T Consensus       163 s~--~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 SR--QIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--eEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            75  699999999                   9999999999999999999876     676777777888899998765


Q ss_pred             c
Q 018697          347 F  347 (351)
Q Consensus       347 ~  347 (351)
                      .
T Consensus       222 ~  222 (541)
T KOG4547|consen  222 E  222 (541)
T ss_pred             c
Confidence            3

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7.2e-11  Score=103.71  Aligned_cols=205  Identities=10%  Similarity=0.065  Sum_probs=117.4

Q ss_pred             ecCCcceeeeeeCCCCCceE--EEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           62 FSHPNEIWDLSSCPFDQRIF--STVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~--~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      ......+.+-+|+|||+.++  .+.+.. ....|.+.++..       ...+.+.   ...+.....+|+|||+.+++++
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~-------g~~~~lt---~~~g~~~~p~wSPDG~~Laf~s  249 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLEN-------PAGKKIL---ALQGNQLMPTFSPRKKLLAFIS  249 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECCC-------CCceEee---cCCCCccceEECCCCCEEEEEE
Confidence            33455667889999998643  232111 123466666651       1222333   3344455689999999755555


Q ss_pred             ecCC--cE--EEEEcCCC--CCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEE--Eccc-CCcCceeecc
Q 018697          140 IDEE--NI--FLWSLDCS--NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFW--DLRS-MGKTNSIEHA  209 (351)
Q Consensus       140 ~~d~--~v--~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~~~~  209 (351)
                      ..+|  .+  .+|++..+  .....+...    ........+|+|||+.|+..+ .+|...+|  ++.. +.....+...
T Consensus       250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~  325 (428)
T PRK01029        250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK  325 (428)
T ss_pred             CCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence            3333  33  34666542  122222211    111345679999999888765 45654555  4432 2222223222


Q ss_pred             -e-eEEEEcCCCCCcEEEEecCC--CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE-EeeC--CCeEEEEEc
Q 018697          210 -H-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL-SAGT--DSTVNLWLV  282 (351)
Q Consensus       210 -~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~--dg~i~iwd~  282 (351)
                       . +....|+|+|+.++++...+  ..|.+||+.. ++ ...+......+....|+|+| +.|+ ++..  ...|.++|+
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEEC
Confidence             2 67889999999555554443  3699999876 43 34444334456789999999 5554 4443  346778888


Q ss_pred             CC
Q 018697          283 ST  284 (351)
Q Consensus       283 ~~  284 (351)
                      ..
T Consensus       403 ~~  404 (428)
T PRK01029        403 IT  404 (428)
T ss_pred             CC
Confidence            75

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=9.3e-13  Score=115.00  Aligned_cols=300  Identities=15%  Similarity=0.220  Sum_probs=198.4

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecC--CcceeeeeeCCCCC---ceEEEEeecCCcc
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH--PNEIWDLSSCPFDQ---RIFSTVFSTGESY   91 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h--~~~v~~i~~~~~~~---~l~~~~~~~~~d~   91 (351)
                      +++.++..+|.+..++.+.     ...++++++.....+....   .|  +-.|-...|+|...   .++++     ...
T Consensus        25 ~~~~a~si~p~grdi~lAs-----r~gl~i~dld~p~~ppr~l---~h~tpw~vad~qws~h~a~~~wiVst-----s~q   91 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLAS-----RQGLYIIDLDDPFTPPRWL---HHITPWQVADVQWSPHPAKPYWIVST-----SNQ   91 (1081)
T ss_pred             Ccccceeeccccchhhhhh-----hcCeEEEeccCCCCCceee---eccCcchhcceecccCCCCceeEEec-----Ccc
Confidence            3444455555554444432     3456677777654433322   23  24677888887533   34443     444


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .-.+|++...      ........+.+|...|+.+.|.|..+.++.+++.|..|..||++......-...    ......
T Consensus        92 kaiiwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~a  161 (1081)
T KOG0309|consen   92 KAIIWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAA  161 (1081)
T ss_pred             hhhhhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccC
Confidence            5668998731      122344567899999999999999997666668899999999997543332222    122356


Q ss_pred             eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      ..++|+-....+++.+..+.|++||++.+........+|   ++.++|+..-...+.+.+.|++|++||..+..+.-...
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~  241 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT  241 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence            788999888888888889999999999876444333356   88888876544468899999999999988644433344


Q ss_pred             eCCCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC-
Q 018697          249 PGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE-  326 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  326 (351)
                      .....+|..-++-|-|+.+.+- --.+..+.+++.+....+...         ....+++.+|.+|.+.|..+.|-..+ 
T Consensus       242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~---------~~~~~pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV---------FDLNTPVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc---------ccCCcceeeecCcchHHHHHhhhhccc
Confidence            4466788888888877433332 222335556555542111000         01257899999999999888775322 


Q ss_pred             --------CceEEEeeeCCeEEEeecCccc
Q 018697          327 --------PWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       327 --------~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                              .+.|++=+.|..+++|-+...+
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i  342 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQI  342 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccHHH
Confidence                    2578999999999999998654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=4.6e-11  Score=101.44  Aligned_cols=222  Identities=17%  Similarity=0.229  Sum_probs=143.9

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee---cCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS---TGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~---~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      +.+++++........  .  .-|...|..+.+||..+.-..+.+.   +|.-..++||.+....      ....+..-.-
T Consensus       146 nev~f~~~~~f~~~~--~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ksF  215 (566)
T KOG2315|consen  146 NEVQFYDLGSFKTIQ--H--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKSF  215 (566)
T ss_pred             ceEEEEecCCcccee--e--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhccc
Confidence            556666666532211  1  2367889999999974543333333   3445579999987311      1111111111


Q ss_pred             cccceeEEEecCCCCCcEEEEec--CC---------cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-
Q 018697          119 HVGKINCVLWWSSGRHDKLVSID--EE---------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-  186 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~--d~---------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  186 (351)
                      ....=..+.|++-|..+++.++.  |.         ++++.+++.......+..      .++|.++.|+|+++.++++ 
T Consensus       216 Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k------~GPVhdv~W~~s~~EF~Vvy  289 (566)
T KOG2315|consen  216 FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK------EGPVHDVTWSPSGREFAVVY  289 (566)
T ss_pred             cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC------CCCceEEEECCCCCEEEEEE
Confidence            22233457899988876665532  33         567777762222222221      2399999999999877665 


Q ss_pred             -ecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecC--CCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018697          187 -TCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (351)
Q Consensus       187 -~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  263 (351)
                       -.-.++.|+|++ +.++..+..+.-+++-|+|.|..++++|-.  .|.|-+||+.+ .+.+..+...  .-+-..|+|+
T Consensus       290 GfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~Pd  365 (566)
T KOG2315|consen  290 GFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSPD  365 (566)
T ss_pred             ecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcCC
Confidence             357899999998 566677765557889999999954444433  48999999997 6677777643  3456789999


Q ss_pred             CCCeEEEeeC------CCeEEEEEcCC
Q 018697          264 YDGFILSAGT------DSTVNLWLVST  284 (351)
Q Consensus       264 ~~~~l~s~~~------dg~i~iwd~~~  284 (351)
                      | .+|+|++.      |+.++||+..-
T Consensus       366 G-e~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  366 G-EYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             C-cEEEEEeccccEEecCCeEEEEecC
Confidence            9 88888875      78899999874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=5.2e-11  Score=101.71  Aligned_cols=182  Identities=12%  Similarity=0.139  Sum_probs=136.9

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeec---cccceeEEEec------C-------------CCCCcEEEEecCCc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDA---HVGKINCVLWW------S-------------SGRHDKLVSIDEEN  144 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~------~-------------~~~~~~~~~~~d~~  144 (351)
                      ...||.+++|+...         .+....+..   -++..++..|.      |             .+...++.+...|.
T Consensus        11 ~~~~g~l~iw~t~~---------~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen   11 STGDGRLRIWDTAK---------NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             cCCCCeEEEEEccC---------ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            37899999999872         233333321   13344444442      2             12223455566899


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKH  222 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~  222 (351)
                      |.+|++..++....+...   .|-..|.++.++.+-..|.+++.|+.+..|+...+..........  +.+++.+||+. 
T Consensus        82 v~~ys~~~g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-  157 (541)
T ss_pred             EEEEEecCCeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-
Confidence            999999976655554433   456699999999988999999999999999999988877777555  99999999998 


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC-----CCCeEEEeeCCCeEEEEEcCC
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE-----YDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++++++.  .|++||+++ ++.+..|.+|.++|.++.|.-.     |..+|.+...+..+.+|-+..
T Consensus       158 ~l~~as~--~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTASR--QIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEeccc--eEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            7877765  899999998 7889999999999999999776     635555666677889998876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.44  E-value=9.1e-12  Score=99.52  Aligned_cols=257  Identities=12%  Similarity=0.118  Sum_probs=183.7

Q ss_pred             CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCC
Q 018697           54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSG  132 (351)
Q Consensus        54 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~  132 (351)
                      ++.....+.||.+.|++...-|..+-++++    +.|.+++||--..        .++.-..+ .....+++++.+.++.
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrd--------s~q~wpsI~~~mP~~~~~~~y~~e~   80 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRD--------SGQYWPSIYHYMPSPCSAMEYVSES   80 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEc----cccceeeeEEecc--------ccccCchhhhhCCCCceEeeeeccc
Confidence            344557788999999999999988889887    7999999997442        22222222 2345788999999988


Q ss_pred             CCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeE
Q 018697          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVR  212 (351)
Q Consensus       133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~  212 (351)
                      .. ++.+-..|++.-+.+...-. ..........|...+..+-|+-....+++.+.|..+.---.+.+..+....   ..
T Consensus        81 ~~-L~vg~~ngtvtefs~sedfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~---~~  155 (404)
T KOG1409|consen   81 RR-LYVGQDNGTVTEFALSEDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN---FE  155 (404)
T ss_pred             eE-EEEEEecceEEEEEhhhhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE---ee
Confidence            74 66777789999888764222 222333345677799999998888889999988887655556555443322   11


Q ss_pred             EEEcCCCCC-cEEEEecCCCeEEEEecccC-CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018697          213 NVDYDTKKK-HLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       213 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  290 (351)
                      +.+..++-. .+...|...|.|.+-.+... -.++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+.-.     
T Consensus       156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~-----  229 (404)
T KOG1409|consen  156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGR-----  229 (404)
T ss_pred             ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCC-----
Confidence            111111111 03444666666665554321 34788899999999999999988 99999999999999999751     


Q ss_pred             CCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                   ......+.+|...|..+..-+.-+ .+.+++.||.|.+|+++-.
T Consensus       230 -------------~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  230 -------------KGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             -------------cceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence                         344556778999999888777666 7999999999999998753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=3.9e-11  Score=104.85  Aligned_cols=280  Identities=11%  Similarity=0.157  Sum_probs=192.8

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe------------EEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE------------LICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      +....++.+..-+++|    +.++.+.++.+......            ...+.+.||.+.|.-+.|+.+.+.|-+    
T Consensus        17 L~c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt----   88 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT----   88 (1189)
T ss_pred             EEEEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc----
Confidence            3444556677777776    46788888887754321            122568899999999999998888866    


Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      +..+|.|.||-+-.       +++-....-...++-|.+++|+.+|.. +.....||.|.+=.++......+-+...   
T Consensus        89 SDt~GlIiVWmlyk-------gsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~---  157 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYK-------GSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQ---  157 (1189)
T ss_pred             cCCCceEEEEeeec-------ccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchh---
Confidence            47899999999872       233222223345678999999999996 5556789999888777432222222222   


Q ss_pred             cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-------cCceee-----cce-eEEEEcC--------CCCCcEEE
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-------KTNSIE-----HAH-VRNVDYD--------TKKKHLLV  225 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~-----~~~-v~~~~~~--------~~~~~~l~  225 (351)
                         ....+.|++|.+.++.+-.+|.+++||.+..-       +.....     .++ +..+.|.        |+.+ .++
T Consensus       158 ---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la  233 (1189)
T KOG2041|consen  158 ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA  233 (1189)
T ss_pred             ---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence               45678999999999999899999999976321       100000     112 5556663        5777 799


Q ss_pred             EecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC---------eEEEEEcCCCCCCCCCCcccc
Q 018697          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---------TVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      ++-.+|.+.+..-.+...|+..-  ..-.+..+.|+++| .+|+.++.|.         .|.+|..-             
T Consensus       234 vcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-------------  297 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-------------  297 (1189)
T ss_pred             EEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-------------
Confidence            99999999887665534444332  33678899999999 9999888643         34443332             


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                             +..+.+++.....|++++|-..|- .+|. ..|+.|++=++++
T Consensus       298 -------G~i~gtlkvpg~~It~lsWEg~gL-riA~-AvdsfiyfanIRP  338 (1189)
T KOG2041|consen  298 -------GHIVGTLKVPGSCITGLSWEGTGL-RIAI-AVDSFIYFANIRP  338 (1189)
T ss_pred             -------hhheEEEecCCceeeeeEEcCCce-EEEE-EecceEEEEeecc
Confidence                   677888888888899999987664 4444 3477888777765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=1.1e-11  Score=112.21  Aligned_cols=197  Identities=15%  Similarity=0.229  Sum_probs=145.3

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      .|....+..+... ++....+..+.+||........++..... .......-+.++++.-++++|+.-+.|.+|+....+
T Consensus        89 wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   89 WIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccchhhhcce-EEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            3334445555553 44445578999999986544433332221 001122233456667788889999999999988433


Q ss_pred             cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          202 KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       202 ~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      ....+. +|   +..+.++-+|+ ++++.++|.++|+|++.+........-+|...|..++|.|.   .++|++.|.+.+
T Consensus       167 ~p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr  241 (967)
T KOG0974|consen  167 KPIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR  241 (967)
T ss_pred             Ccceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence            333233 55   99999999999 89999999999999999855444456689999999999995   899999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +|+..                    +..+..+..|. ..|+.++..++.. +.++++.|+.+++|++..
T Consensus       242 vW~~~--------------------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  242 VWGVN--------------------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEecc--------------------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence            99776                    45556787774 4689999999877 899999999999999864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=2.5e-12  Score=109.05  Aligned_cols=215  Identities=16%  Similarity=0.170  Sum_probs=152.5

Q ss_pred             EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      +....+.+|+..|..++--.+.+.++++    +.|++|++|.+..+..+  ..+..+..+++.|+.+|.++.|-.+.+  
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~--~~tsaCQfTY~aHkk~i~~igfL~~lr--  797 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDE--IGTSACQFTYQAHKKPIHDIGFLADLR--  797 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCc--cccceeeeEhhhccCcccceeeeeccc--
Confidence            4446678999999999877777777776    79999999999854322  223456778899999999999999877  


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-----
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-----  209 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-----  209 (351)
                      .+++ .|+-|.+||.--+....+.......+....|.++.- -+...++++ +...+|+++|.+.++-...++..     
T Consensus       798 ~i~S-cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P  875 (1034)
T KOG4190|consen  798 SIAS-CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP  875 (1034)
T ss_pred             eeee-ccCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence            3444 488999999876555444444333332223333321 123445555 57899999999988765555422     


Q ss_pred             e--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE-EEcCC
Q 018697          210 H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL-WLVST  284 (351)
Q Consensus       210 ~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~  284 (351)
                      .  +.+++..+.|. .++.+-.+|.|.+.|.|+ ++.+..+..-.-....++ .|.. ..|+....|.++.+ |....
T Consensus       876 na~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  876 NALTRAIAVADKGN-KLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             chheeEEEeccCcc-hhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence            1  89999999998 789999999999999998 666666655444444444 4555 67888888888888 87655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.9e-11  Score=105.59  Aligned_cols=242  Identities=10%  Similarity=0.075  Sum_probs=168.7

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC------CCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL------NSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ......++.|+....++++    ||.||.++|-.+.+.....      ...+...-+++.+|.+.|.-+.|+.+.+. +-
T Consensus        13 nnvkL~c~~WNke~gyIAc----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIAC----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LT   87 (1189)
T ss_pred             CCceEEEEEEcccCCeEEe----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-cc
Confidence            3457789999998888877    5899999999987542221      11233455678999999999999998884 44


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-eeecceeEEEEc
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEHAHVRNVDY  216 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~v~~~~~  216 (351)
                      ++..+|-|.+|-+-++.-........   ..+.|.+++|+.+|..+...-.||.|.+=.++..+.-. .++..+...+.|
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w  164 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW  164 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence            44668999999998776555544433   23489999999999999999999999887776432211 222122678899


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCC------cceeE----eeCCCCceeEEEec--------CCCCCeEEEeeCCCeEE
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLK------APIQE----LPGHTHWTWAVCCN--------PEYDGFILSAGTDSTVN  278 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~v~~~~~~--------~~~~~~l~s~~~dg~i~  278 (351)
                      ++|.+ .++.+-.+|.+.+||....-      .+...    +......|-.+.|.        |+. ..|+.+-..|.+.
T Consensus       165 s~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  165 SEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQ  242 (1189)
T ss_pred             cccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceeh
Confidence            99998 56668889999999976311      11111    11122235556553        455 7888899999888


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      |..-..                  ...++..-.+  -.|.+..|+++|. +||.+|.|
T Consensus       243 iMR~eN------------------D~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSEN------------------DPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGND  279 (1189)
T ss_pred             hhhhcC------------------CCCCeEEecc--cEeecceecCCCc-EEEEccCc
Confidence            865554                  1333322222  4688999999999 88888865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=5.3e-10  Score=108.04  Aligned_cols=256  Identities=9%  Similarity=0.108  Sum_probs=153.2

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec--------------cccceeEEEecCCCCCc
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--------------HVGKINCVLWWSSGRHD  135 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~  135 (351)
                      .+++++.+..++.+   ....+.|+++|...          ..+..+..              +-.....+++.+++..+
T Consensus       572 gvavd~~~g~lyVa---Ds~n~rI~v~d~~G----------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L  638 (1057)
T PLN02919        572 KLAIDLLNNRLFIS---DSNHNRIVVTDLDG----------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL  638 (1057)
T ss_pred             eEEEECCCCeEEEE---ECCCCeEEEEeCCC----------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence            57777765555554   36677899999762          22222211              11235789999988754


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccc-----c-------CcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCc
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQS-----S-------GMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGK  202 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~  202 (351)
                      +++-...+.|+++|+.++. ...+.....     .       .......+++++|++..+ ++...++.|++||..++..
T Consensus       639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            4444667889999987532 111110000     0       001234688999955444 5556788999999876532


Q ss_pred             Cce--------ee--------cceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee------------EeeCC---
Q 018697          203 TNS--------IE--------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ------------ELPGH---  251 (351)
Q Consensus       203 ~~~--------~~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~---  251 (351)
                      ...        ..        ......++++|++..++++-..++.|++||+.+....+.            .+-.+   
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            110        00        001678999999986777777889999999875321110            00000   


Q ss_pred             -----CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          252 -----THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       252 -----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                           -.....++++++| .++++-..++.|++||..........-.......   .+.   ...+.-....+++++++|
T Consensus       798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---dG~---~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---DGK---ALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---CCc---ccccccCCceEEEEeCCC
Confidence                 1123588999999 8888888999999999976211100000000000   000   011122346789999999


Q ss_pred             CceEEEeeeCCeEEEeecCcc
Q 018697          327 PWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      + ++++-+.++.|++||+.+.
T Consensus       871 ~-lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        871 R-LFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             C-EEEEECCCCEEEEEECCCC
Confidence            8 8888889999999998753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=4.4e-12  Score=120.55  Aligned_cols=190  Identities=13%  Similarity=0.215  Sum_probs=144.0

Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      .+-..|.++.-+|...+ +++++.||.|++|....+.........   +. ..|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus      2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~---g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTA---GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeecc---Cc-chhhhhhhcccCCceeeeccCCceeeccc
Confidence            44566788888888885 888899999999999865544433332   22 58999999999999999999999999998


Q ss_pred             ccCCcCceeecce--eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          198 RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       198 ~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      . .++....+...  ...+.|-.  . ++++++   .++.+.+||.-.+...-..-..|.+.++++++.|.. .+|++|+
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecC
Confidence            7 33333333222  56666654  2 556554   568999999765333222226899999999999999 9999999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .+|.|++||++.                   .+++++++.         ++ ... ++++++..|.++||++..+
T Consensus      2356 r~G~v~l~D~rq-------------------rql~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQ-------------------RQLRHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CcCcEEEeehHH-------------------HHHHHHhhh---------hh-hhh-eeeccCcccceEEEEcccc
Confidence            999999999998                   777777755         44 334 8999999999999999865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=1.3e-11  Score=117.41  Aligned_cols=188  Identities=12%  Similarity=0.217  Sum_probs=139.9

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEe
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ..+-..|.++.-+|...+.++    |+.||.|++|...         ..+.+..++ .....|+.+.|+.+|.. +-++.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Ylt----gs~dgsv~~~~w~---------~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d 2270 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLT----GSQDGSVRMFEWG---------HGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVD 2270 (2439)
T ss_pred             ecccCceeeecCCCCCceEEe----cCCCceEEEEecc---------CCCeEEEeeccCcchhhhhhhcccCCc-eeeec
Confidence            345578888888998888877    5899999999987         445444443 23488999999999985 56666


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      .||.+.+|....    ..+.  ....|.....++.|-.  ..+++++   .++.+.+||..-.....-+...|   ++++
T Consensus      2271 ~dg~l~l~q~~p----k~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP----KPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred             cCCceeecccCC----ccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence            799999999871    1111  1224555777777764  5566554   57899999976443333333344   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++-|..+ +|++|+.+|.|++||++. .+.+++++.         ++ .. .++++|+..|.|+||++..
T Consensus      2343 ~~~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2343 AYAPKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEcCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccc
Confidence            9999998 999999999999999997 556665553         44 33 8999999999999999987

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.2e-09  Score=93.86  Aligned_cols=197  Identities=11%  Similarity=0.074  Sum_probs=117.6

Q ss_pred             cceeeeeeCCCCCc-eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--C
Q 018697           66 NEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--E  142 (351)
Q Consensus        66 ~~v~~i~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d  142 (351)
                      +.+....|+|+++. ++.+.+. +....|.++|+.         +++. ..+....+......|+|||+.++++.+.  +
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~---------tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLY---------TGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECC---------CCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence            36778999999986 5544322 224568888876         3332 2222345556678899999976655543  4


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---CeEEEEEcccCCcCceeecceeEEEEcCCC
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSMGKTNSIEHAHVRNVDYDTK  219 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~  219 (351)
                      ..|.++|+.++. ...+....  +   ......|+|||+.|+..+..   ..|+++|+.+++.......+. ....|+|+
T Consensus       257 ~~Iy~~dl~~g~-~~~LT~~~--~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPD  329 (419)
T PRK04043        257 PDIYLYDTNTKT-LTQITNYP--G---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTY  329 (419)
T ss_pred             cEEEEEECCCCc-EEEcccCC--C---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCC
Confidence            568888887543 22222111  1   23345799999988877632   268888888776533322222 23489999


Q ss_pred             CCcEEEEecCC--------CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe--EEEEEcC
Q 018697          220 KKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST--VNLWLVS  283 (351)
Q Consensus       220 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~  283 (351)
                      |+.++++....        ..|.+.|+.. + ..+.+... .......|+|+|..++++....+.  +.+.++.
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCC-C-CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            99666655443        3688888875 3 24445433 233468899999434444433343  4444554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.4e-10  Score=91.76  Aligned_cols=251  Identities=15%  Similarity=0.255  Sum_probs=166.2

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc------------cceeEEEecCCC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSSG  132 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~  132 (351)
                      ...|+++.|...|.+|++    |...|.|.+|.-+...+    -..+....+++|.            ..|..+.|..++
T Consensus        26 ad~ItaVefd~tg~Ylat----GDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t   97 (460)
T COG5170          26 ADKITAVEFDETGLYLAT----GDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT   97 (460)
T ss_pred             cceeeEEEeccccceEee----cCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence            467889999988888877    46678899987653211    0122233345553            357888887654


Q ss_pred             -CCcEEEEecCCcEEEEEcCCCCC----------------------Ccccccc----------------cccCcccceee
Q 018697          133 -RHDKLVSIDEENIFLWSLDCSNK----------------------NAQVQSK----------------QSSGMLHYLSG  173 (351)
Q Consensus       133 -~~~~~~~~~d~~v~iwd~~~~~~----------------------~~~~~~~----------------~~~~~~~~v~~  173 (351)
                       ...++.++.|.+|++|.+.....                      ...+...                ....|..-+.+
T Consensus        98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170          98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence             44477788899999999864310                      0000000                11345556888


Q ss_pred             eEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cce--------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      ++|+.|...+++ +.|-.|.+|.++-......+.  .+|        |++..|+|...+++.-.+..|.|++-|+|...-
T Consensus       178 iS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         178 ISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             eeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            999987776665 457789999987543322221  122        899999999887888888999999999995221


Q ss_pred             -----ceeE----------eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          244 -----PIQE----------LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       244 -----~~~~----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                           .+..          +..-...|..+.|++.| +++++-+. -+++|||.+..                  ..++.
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~------------------k~pik  316 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMA------------------KNPIK  316 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccc------------------cCCce
Confidence                 1111          11223568889999999 99987765 47999999972                  45555


Q ss_pred             eecccc------------ceE---EEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          309 SYSDYE------------DSV---YGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       309 ~~~~~~------------~~v---~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +..-|.            ..|   ..+.|+.+.+ .+.+|+..+..-+|-..
T Consensus       317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eechHHHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeeccc
Confidence            554332            122   3578888887 78899888887777643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=5e-11  Score=108.10  Aligned_cols=194  Identities=12%  Similarity=0.148  Sum_probs=142.3

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccce-----eEEEecCCCCCcEEEEe
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~~~~~  140 (351)
                      +.|....+......++.+    ..+..+.+|+..         .......+ .+...+     .-+.++++.-+ +.+++
T Consensus        88 ~wi~g~~l~~e~k~i~l~----~~~ns~~i~d~~---------~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~-i~~gs  152 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALV----TSRNSLLIRDSK---------NSSVLSKI-QSDERCTLYSSLIIGDSAEELY-IASGS  152 (967)
T ss_pred             ccccccchhhhcceEEEE----EcCceEEEEecc---------cCceehhc-CCCceEEEEeEEEEeccCcEEE-EEecc
Confidence            455555566666677765    367789999987         33333333 222221     11223333322 34446


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                      .-+.|.+|+....+...     ...+|...+.++.|+-+|.++++.+.|.++++|++++.+.......+|   +..+.|.
T Consensus       153 v~~~iivW~~~~dn~p~-----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~  227 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKPI-----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL  227 (967)
T ss_pred             ccccEEEEeccccCCcc-----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence            67999999998433222     345788899999999999999999999999999999988776444456   8899999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      |.   .++++++|.+.++|+..  ...+..+..|. ..+..++..+.. ..++|++.|+.+++||....
T Consensus       228 ~n---~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  228 PN---RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cc---eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence            88   58999999999999776  44566777776 568999998888 99999999999999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.33  E-value=4.1e-09  Score=88.52  Aligned_cols=223  Identities=10%  Similarity=0.001  Sum_probs=147.3

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe---------cCCcEEEEEcCCCCCCccccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------DEENIFLWSLDCSNKNAQVQS  161 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---------~d~~v~iwd~~~~~~~~~~~~  161 (351)
                      +.|.+.|..         +.+.+.++..-..+- .+ ++|+++.++++.+         .+..|.+||..+.+...++..
T Consensus        27 ~~v~ViD~~---------~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~   95 (352)
T TIGR02658        27 TQVYTIDGE---------AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL   95 (352)
T ss_pred             ceEEEEECC---------CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc
Confidence            789999988         667777775544333 34 9999998777778         789999999998766555443


Q ss_pred             ccccC--cccceeeeEECCCCCcEEEee-c-CCeEEEEEcccCCcCceeecce---------------------------
Q 018697          162 KQSSG--MLHYLSGGAWDPHDVNAVAAT-C-ESSVQFWDLRSMGKTNSIEHAH---------------------------  210 (351)
Q Consensus       162 ~~~~~--~~~~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~---------------------------  210 (351)
                      ...+.  .......++++|||++|++.. . +..|.+.|+.+++.+..+..+.                           
T Consensus        96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d  175 (352)
T TIGR02658        96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG  175 (352)
T ss_pred             CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec
Confidence            22100  112344789999999999775 3 7899999999887655443211                           


Q ss_pred             ------eEEEE-c-------------CC-CCCcEEEEecCCCeEEEEecccC----CcceeEeeC-------CCCceeEE
Q 018697          211 ------VRNVD-Y-------------DT-KKKHLLVTAADESGIHLWDLRML----KAPIQELPG-------HTHWTWAV  258 (351)
Q Consensus       211 ------v~~~~-~-------------~~-~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~-------~~~~v~~~  258 (351)
                            ..... |             .+ +++ ++.+..+ |+|.+.|+...    ..+...+..       ......-+
T Consensus       176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             CCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence                  00111 1             22 565 4444444 89999996431    122222211       12334459


Q ss_pred             EecCCCCCeEEEee----------CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC-
Q 018697          259 CCNPEYDGFILSAG----------TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP-  327 (351)
Q Consensus       259 ~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  327 (351)
                      +++|++ ..++...          ..+.|.++|..+                   .+.+..+.. ...+..++++||++ 
T Consensus       254 a~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t-------------------~kvi~~i~v-G~~~~~iavS~Dgkp  312 (352)
T TIGR02658       254 AYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKT-------------------GKRLRKIEL-GHEIDSINVSQDAKP  312 (352)
T ss_pred             EEcCCC-CEEEEEecCCccccccCCCCEEEEEECCC-------------------CeEEEEEeC-CCceeeEEECCCCCe
Confidence            999999 5555432          225799999998                   777777754 34689999999998 


Q ss_pred             ceEEEeeeCCeEEEeecCcc
Q 018697          328 WIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .++++...++.|.+.|+.+.
T Consensus       313 ~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCC
Confidence            65666667899999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.32  E-value=1.4e-11  Score=107.87  Aligned_cols=215  Identities=18%  Similarity=0.252  Sum_probs=157.0

Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC--CcEEEe
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAA  186 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~  186 (351)
                      +......++ -.+.+..+..+|.|+.+++|+..  -+.+.|+.........+.....-   .+....|+|..  .+-++.
T Consensus        14 tf~kslsl~-v~~~~~a~si~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw---~vad~qws~h~a~~~wiVs   87 (1081)
T KOG0309|consen   14 TFGKSLSLK-VDGGFNAVSINPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPW---QVADVQWSPHPAKPYWIVS   87 (1081)
T ss_pred             ccCceeEEE-ecCcccceeeccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcc---hhcceecccCCCCceeEEe
Confidence            443333342 34577888999999975555543  36677887654444443322111   57778888764  344444


Q ss_pred             ecCCeEEEEEcccCC--cCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018697          187 TCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (351)
Q Consensus       187 ~~d~~i~iwd~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  261 (351)
                      .....-.+|.+....  .+.-...+|   ++.+.|+|+.+.++++++-|-.+..||++.+..++..+..-......|+|+
T Consensus        88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen   88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            445556688886443  333334556   999999999998999999999999999999999998888777788999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      -..+..+| .+....|++||.+.+                  ..++..+++|...|+.++|..-....+.+++.|++|+.
T Consensus       168 yk~p~vla-sshg~~i~vwd~r~g------------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  168 YKDPNVLA-SSHGNDIFVWDLRKG------------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             ccCcchhh-hccCCceEEEeccCC------------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            88745554 455667999999983                  67888999999999999998755447889999999999


Q ss_pred             eecCccc
Q 018697          342 ESVKPFL  348 (351)
Q Consensus       342 w~~~~~~  348 (351)
                      |+.++..
T Consensus       229 w~y~kSt  235 (1081)
T KOG0309|consen  229 WDYSKST  235 (1081)
T ss_pred             ecccccc
Confidence            9987644

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.31  E-value=4.5e-11  Score=92.08  Aligned_cols=221  Identities=14%  Similarity=0.150  Sum_probs=134.1

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee----
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT----  187 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  187 (351)
                      +...+..|.++-.+-+.+-.+.. ++.+..||.+.+++.+..   ..........|. ...+.+....++.+.++.    
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~  155 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKD---LALMSRIPSIHS-GSASRKICRHGNSILSGGCGNW  155 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCc-eEecCCCceEEEEechHH---Hhhhhhcccccc-cccccceeecccEEecCCcceE
Confidence            34444455444333333333332 666688999999998742   222211111111 122223333445444432    


Q ss_pred             -cCCeEEEEEcccCCcCceee-cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          188 -CESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       188 -~d~~i~iwd~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                       .-+..+.|+++..+....-. ... +.+++-+|..++++++|++||.+.+||.|....+...+..|..+++.+-|+|..
T Consensus       156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence             23456677766443222221 112 999999999988999999999999999998777888889999999999999999


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCc-ccccCCccccccccee-------eccccceEEEEEeCCCCCceEEEeeeC
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESPNQRANSLLNS-------YSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      +..|++++.||.+--||....... ...+ +...+|..  +.++..       +......|+++...  |+ .|++|+.-
T Consensus       236 p~~Lft~sedGslw~wdas~~~l~-i~~~~s~~s~WLs--gD~v~s~i~i~~ll~~~~~SinsfDV~--g~-~lVcgtd~  309 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDASTTFLS-ISNQASVISSWLS--GDPVKSRIEITSLLPSRSLSINSFDVL--GP-CLVCGTDA  309 (319)
T ss_pred             chheeEecCCCcEEEEcCCCceEE-ecCcccccccccc--CCcccceEeeeccccccceeeeeeecc--Cc-eEEecccc
Confidence            899999999999999998842110 0000 11111111  111111       12223356665554  56 78899988


Q ss_pred             CeEEEee
Q 018697          337 GRVVVES  343 (351)
Q Consensus       337 g~v~vw~  343 (351)
                      +.|++++
T Consensus       310 eaIyl~~  316 (319)
T KOG4714|consen  310 EAIYLTR  316 (319)
T ss_pred             ceEEEec
Confidence            8898875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.4e-09  Score=93.55  Aligned_cols=192  Identities=10%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             ceeEEEecCCCCCcEE-EEe--cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee---cCCeEEEE
Q 018697          122 KINCVLWWSSGRHDKL-VSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFW  195 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~-~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iw  195 (351)
                      .+....|+|+|+.+++ ++.  .+..|+++|+.++.... +..  ..+   ......|+||++.++...   .+..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~--~~g---~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS--SQG---MLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec--CCC---cEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            7788999999986344 442  24679999997654322 221  112   455678999998877653   24578888


Q ss_pred             EcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          196 DLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       196 d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      |+.+++......... .....|+|||+.++++....+  .|+++|+.. ++ .+.+.....  ....|+|+| ..|+-..
T Consensus       263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~--~~~~~SPDG-~~Ia~~~  337 (419)
T PRK04043        263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGK--NNSSVSTYK-NYIVYSS  337 (419)
T ss_pred             ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCC--cCceECCCC-CEEEEEE
Confidence            987775332222121 345689999986666655544  567777764 33 333322111  234899999 5554443


Q ss_pred             -CC--------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe--EEE
Q 018697          273 -TD--------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VVV  341 (351)
Q Consensus       273 -~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--v~v  341 (351)
                       ..        ..|.+.|+..                   +.. ..+.... ......|+|||+.++.+....+.  +.+
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~-------------------g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~  396 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNS-------------------DYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGI  396 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCC-------------------CCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence             32        2577777765                   322 2222221 22358899999955555443333  555


Q ss_pred             eecC
Q 018697          342 ESVK  345 (351)
Q Consensus       342 w~~~  345 (351)
                      .+++
T Consensus       397 ~~l~  400 (419)
T PRK04043        397 IRLN  400 (419)
T ss_pred             EecC
Confidence            5554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.28  E-value=6.7e-09  Score=81.76  Aligned_cols=220  Identities=11%  Similarity=0.140  Sum_probs=132.6

Q ss_pred             EEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce
Q 018697          126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  205 (351)
                      ++.+++|+  ++|.-.|..|.|-..++.-....-.....++....-.-++|+||+..|+.+...|+|+++|+.... +..
T Consensus         3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             eeecCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence            56678888  677777888887766643222111111122233367789999999999999999999999998533 233


Q ss_pred             eecce---------eEEEEcCCCC-----CcEEEEecCCCeEEEEeccc----CCcceeEee--C-CCCceeEEEecCCC
Q 018697          206 IEHAH---------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRM----LKAPIQELP--G-HTHWTWAVCCNPEY  264 (351)
Q Consensus       206 ~~~~~---------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~--~-~~~~v~~~~~~~~~  264 (351)
                      +....         |..+.|.+..     .+.|++-...|.++-|-+..    .-+..+.+.  . +...|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            33221         6666664432     23455566778777776532    112233333  2 46789999999998


Q ss_pred             CCeEEEeeC-CC----------eEEEEEcCCCCCCCCCCccc-ccCCcc----ccccc--ceee---ccccceEEEEEeC
Q 018697          265 DGFILSAGT-DS----------TVNLWLVSTSNHDELPSESL-VESPNQ----RANSL--LNSY---SDYEDSVYGLAWS  323 (351)
Q Consensus       265 ~~~l~s~~~-dg----------~i~iwd~~~~~~~~~~~~~~-~~~~~~----~~~~~--~~~~---~~~~~~v~~~~~~  323 (351)
                       ++|+.||. ..          -+..|.+-...+--...... +.....    .-.+.  +..+   ......|..|..|
T Consensus       160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS  238 (282)
T PF15492_consen  160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS  238 (282)
T ss_pred             -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence             66666653 11          36677766543322211111 100000    00000  0011   1235679999999


Q ss_pred             CCCCceEEEeeeCCeEEEeecCccccc
Q 018697          324 SREPWIFASLSYDGRVVVESVKPFLSR  350 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~~~~~~~  350 (351)
                      |||+ +||+...+|.|.+|+++....+
T Consensus       239 Pdg~-~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  239 PDGS-LLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             CCCC-EEEEEEcCCeEEEEecCcchhh
Confidence            9999 9999999999999999876543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=1.6e-08  Score=84.83  Aligned_cols=143  Identities=11%  Similarity=0.159  Sum_probs=103.7

Q ss_pred             ccccceeEEEecCCCCCcEEEEecCC-cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEE-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      +|.+.|.-..+..+++. ++.+..|| .+-|+|..++... . ..    .....|.++..+|+|++++++.....+.+.|
T Consensus       357 ~~~~~VrY~r~~~~~e~-~vigt~dgD~l~iyd~~~~e~k-r-~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vid  429 (668)
T COG4946         357 GKKGGVRYRRIQVDPEG-DVIGTNDGDKLGIYDKDGGEVK-R-IE----KDLGNIEAVKVSPDGKKVVVANDRFELWVID  429 (668)
T ss_pred             CCCCceEEEEEccCCcc-eEEeccCCceEEEEecCCceEE-E-ee----CCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence            67777888888888774 66776676 8999999864321 1 11    1233799999999999999999999999999


Q ss_pred             cccCCcCceeecce--eEEEEcCCCCCcEEEEecCCC----eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          197 LRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       197 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +.++.....-+...  |..++|+|+++ ++|-+--+|    .|++||+.. .+ +.........-.+-+|.|++ ++|.-
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~-~K-iy~vTT~ta~DfsPaFD~d~-ryLYf  505 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG-GK-IYDVTTPTAYDFSPAFDPDG-RYLYF  505 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC-Ce-EEEecCCcccccCcccCCCC-cEEEE
Confidence            99987543333222  99999999999 787776665    699999985 33 44444344445567888888 66553


Q ss_pred             e
Q 018697          271 A  271 (351)
Q Consensus       271 ~  271 (351)
                      -
T Consensus       506 L  506 (668)
T COG4946         506 L  506 (668)
T ss_pred             E
Confidence            3

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=2.9e-08  Score=81.16  Aligned_cols=224  Identities=14%  Similarity=0.069  Sum_probs=138.9

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEec-CCCCCcEEEEecCCcEEEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW-SSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~d~~v~iw  148 (351)
                      ++.|.+....|+.+   .-..+.|..|+..         .... ..+....  ...+++. +++.  ++++.. +.+.++
T Consensus         4 gp~~d~~~g~l~~~---D~~~~~i~~~~~~---------~~~~-~~~~~~~--~~G~~~~~~~g~--l~v~~~-~~~~~~   65 (246)
T PF08450_consen    4 GPVWDPRDGRLYWV---DIPGGRIYRVDPD---------TGEV-EVIDLPG--PNGMAFDRPDGR--LYVADS-GGIAVV   65 (246)
T ss_dssp             EEEEETTTTEEEEE---ETTTTEEEEEETT---------TTEE-EEEESSS--EEEEEEECTTSE--EEEEET-TCEEEE
T ss_pred             ceEEECCCCEEEEE---EcCCCEEEEEECC---------CCeE-EEEecCC--CceEEEEccCCE--EEEEEc-CceEEE
Confidence            56788855555554   3567788888876         2222 2222222  6667777 6655  555544 455666


Q ss_pred             EcCCCCCCcccccccccC-cccceeeeEECCCCCcEEEeecC--------CeEEEEEcccCCcCceeecce-eEEEEcCC
Q 018697          149 SLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDT  218 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~  218 (351)
                      |+.++. ...+....... .....+++++.|+|+..++....        |.|..++.. ++......... .+.++|+|
T Consensus        66 d~~~g~-~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   66 DPDTGK-VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             ETTTTE-EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred             ecCCCc-EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence            887642 22222221111 34578999999999966655432        557777766 44333333222 89999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcce------eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPI------QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      +++.++++-+..+.|..|++......+      ..+.......-.+++..+| ++.++....+.|.++|.+         
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~---------  213 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD---------  213 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT---------
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC---------
Confidence            998666777888999999997533311      1222222347889999999 888877788899999986         


Q ss_pred             cccccCCcccccccceeeccccceEEEEEe-CCCCCceEEEee
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLS  334 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~  334 (351)
                                 ++.+..+......+++++| -++...+++|.+
T Consensus       214 -----------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  214 -----------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -----------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             -----------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                       5666666554457899999 466564666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=7.5e-08  Score=91.80  Aligned_cols=246  Identities=12%  Similarity=0.141  Sum_probs=148.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      ..+.|.++.|.++...++.+    -.+|.|.+...+.      .+....+.....-...|.+++||||+.- ++....++
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~----~~~Gdi~~~~~~~------~~~~~~~E~VG~vd~GI~a~~WSPD~El-la~vT~~~  142 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIA----LASGDIILVREDP------DPDEDEIEIVGSVDSGILAASWSPDEEL-LALVTGEG  142 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEE----ECCceEEEEEccC------CCCCceeEEEEEEcCcEEEEEECCCcCE-EEEEeCCC
Confidence            34789999999998887776    3677788873321      0012233333345678999999999995 44444466


Q ss_pred             cEEEEEcCC-----------------------CCCCcccc------------ccc----ccC---cccceeeeEECCCCC
Q 018697          144 NIFLWSLDC-----------------------SNKNAQVQ------------SKQ----SSG---MLHYLSGGAWDPHDV  181 (351)
Q Consensus       144 ~v~iwd~~~-----------------------~~~~~~~~------------~~~----~~~---~~~~v~~~~~~~~~~  181 (351)
                      ++.+.+-+=                       |++..++.            ...    ..+   ....-..++|-.||.
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence            776653210                       00000000            000    000   122456789999999


Q ss_pred             cEEEeec------CCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecC---CCeEEEEecccCCcceeEee-
Q 018697          182 NAVAATC------ESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELP-  249 (351)
Q Consensus       182 ~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~-  249 (351)
                      ++++.+-      -..++||+-+ |....+.+...  -.+++|.|.|. ++++...   ...|.+|..+  +.....|. 
T Consensus       223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErN--GLrhgeF~l  298 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERN--GLRHGEFTL  298 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecC--CcEeeeEec
Confidence            9998763      2589999966 54433333222  56899999998 7776653   3467777744  32222222 


Q ss_pred             ---CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCC
Q 018697          250 ---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR  325 (351)
Q Consensus       250 ---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  325 (351)
                         .....|..+.|++++ .+||..-.|. |.+|-+.+..                 +-+-+.+.. ....+..+.|+|.
T Consensus       299 ~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH-----------------WYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH-----------------WYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE-----------------EEEEEEEEccCCCCCCceEECCC
Confidence               345679999999999 8998877665 9999887621                 222222321 1223445888887


Q ss_pred             CCceEEEeeeCCeEEEee
Q 018697          326 EPWIFASLSYDGRVVVES  343 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~  343 (351)
                      .+..|.....+|.+..++
T Consensus       360 ~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCEEEEEecCCcEEEEE
Confidence            665566666556665544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=4.6e-08  Score=94.94  Aligned_cols=201  Identities=12%  Similarity=0.098  Sum_probs=132.4

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-----------------ccceeEEEec
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-----------------VGKINCVLWW  129 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~~~~~  129 (351)
                      ....+++.+++..|+++   ....+.|+++|...          ..+.++.+-                 -.....++++
T Consensus       625 ~P~GIavd~~gn~LYVa---Dt~n~~Ir~id~~~----------~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d  691 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVA---DTENHALREIDFVN----------ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE  691 (1057)
T ss_pred             CCcEEEEeCCCCEEEEE---eCCCceEEEEecCC----------CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe
Confidence            35788999888776665   34567899998762          122222110                 1123578999


Q ss_pred             CCCCCcEEEEecCCcEEEEEcCCCCCCcccccc----c------ccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcc
Q 018697          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----Q------SSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLR  198 (351)
Q Consensus       130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~------~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~  198 (351)
                      |++..++++.+.++.|++||..++... .+...    .      .........+++++|+++.|+++ +.++.|++||+.
T Consensus       692 p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~  770 (1057)
T PLN02919        692 PVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK  770 (1057)
T ss_pred             cCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            966655566577899999998754211 00000    0      00011246779999999866655 567999999998


Q ss_pred             cCCcCc-------------eee----------cceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-----
Q 018697          199 SMGKTN-------------SIE----------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-----  250 (351)
Q Consensus       199 ~~~~~~-------------~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  250 (351)
                      ++....             .+.          ..+...++++++|. ++++-..++.|++||... +. +..+.+     
T Consensus       771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G  847 (1057)
T PLN02919        771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAG  847 (1057)
T ss_pred             CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-Ce-EEEEeccCCcC
Confidence            654211             000          01167899999997 888888999999999875 32 333322     


Q ss_pred             ---------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          251 ---------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       251 ---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                               .-.....|+++++| +++++-+.++.|++||+.+.
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCC
Confidence                     12246789999999 88888899999999999874

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.17  E-value=1e-08  Score=79.77  Aligned_cols=184  Identities=10%  Similarity=0.052  Sum_probs=124.7

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      ||.-|.+.+|...+        ..........|...|+-+.=..+...-+..++.|.++++.++.-+.....+.. .  .
T Consensus        90 gG~~g~fd~~~~~t--------n~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~--~  158 (344)
T KOG4532|consen   90 GGASGQFDLFACNT--------NDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-Q--N  158 (344)
T ss_pred             ccccceeeeecccC--------cccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-c--c
Confidence            57889999999873        22333444455554443322223332366777888999988874322211111 1  0


Q ss_pred             cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecc----eeEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHA----HVRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                        -.+.+++++++++++++.+....|..|.+.... .+..+..+    +-.+..|+.... .+|++..||++.|||+|..
T Consensus       159 --~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  159 --LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             --cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence              148889999999999999999999999887542 22222211    167888998887 8999999999999999987


Q ss_pred             CcceeEe----eCCCCceeEEEecCCCC-CeEEEeeCCCeEEEEEcCC
Q 018697          242 KAPIQEL----PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       242 ~~~~~~~----~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+....    ..|.+.+..+.|++.|. .+|+..-.-+.+.+-|++.
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            6655443    35889999999998773 2344444467899999998

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=3.2e-11  Score=107.79  Aligned_cols=213  Identities=11%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +.+..|...-+|++|+-..+.|+++    .-.|.|+++++.         ++........|.++|+-+.-+.+|..++..
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~---------sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVS---------SGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEee----eccceEEEEEcc---------CccccccccccccccccccccCCcceeeee
Confidence            4566788899999999988888884    789999999998         677778888999999999999999853433


Q ss_pred             EecC-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e
Q 018697          139 SIDE-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V  211 (351)
Q Consensus       139 ~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v  211 (351)
                      ++.. --..+|++..-......+.        .-.++.|+.....-+.|+......+||++++.+..++..+.      -
T Consensus      1162 ss~S~PlsaLW~~~s~~~~~Hsf~--------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD--------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred             ccccCchHHHhccccccCcccccc--------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence            3333 3678999985333332222        34567787655555566666778999999998777643222      6


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      ++..|+|+.. +++   .||.  +||+|. .+.++.|...+..+. -.|+|.| .-++..+.     |||+++       
T Consensus      1234 n~a~FsP~D~-LIl---ndGv--LWDvR~-~~aIh~FD~ft~~~~-G~FHP~g-~eVIINSE-----IwD~RT------- 1292 (1516)
T KOG1832|consen 1234 NLAHFSPCDT-LIL---NDGV--LWDVRI-PEAIHRFDQFTDYGG-GGFHPSG-NEVIINSE-----IWDMRT------- 1292 (1516)
T ss_pred             cccccCCCcc-eEe---eCce--eeeecc-HHHHhhhhhheeccc-ccccCCC-ceEEeech-----hhhhHH-------
Confidence            7889999998 665   5554  799998 467777765543333 3599999 77776664     899998       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                                  ..+++....-..  ..+.|+..|.
T Consensus      1293 ------------F~lLh~VP~Ldq--c~VtFNstG~ 1314 (1516)
T KOG1832|consen 1293 ------------FKLLHSVPSLDQ--CAVTFNSTGD 1314 (1516)
T ss_pred             ------------HHHHhcCccccc--eEEEeccCcc
Confidence                        666665544322  4566666665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1e-10  Score=99.48  Aligned_cols=166  Identities=14%  Similarity=0.223  Sum_probs=118.3

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc--ccccccCcccceeeeEECCCCCcEEEeecC
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (351)
                      .+..+.+|...|..++--.+.+. +++++.|++|++|.++........  -.-....|+.+|.++.|..+.+++++  .|
T Consensus       727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD  803 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD  803 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence            34567899999988865555443 788899999999999854322221  11234568889999999887766654  57


Q ss_pred             CeEEEEEcccCCcCceeecc--e-----eEEEEcCCCCCcEEEEe-cCCCeEEEEecccCCcceeEee-----CCCCcee
Q 018697          190 SSVQFWDLRSMGKTNSIEHA--H-----VRNVDYDTKKKHLLVTA-ADESGIHLWDLRMLKAPIQELP-----GHTHWTW  256 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~--~-----v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~  256 (351)
                      |.|++||.--+..+..+...  +     |.|+.- -+.. +++.| +...+|+++|.|. ..-..+++     +....+.
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~-iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRH-ILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEeccc-Ccch-heeeeccchhhheeeeccc-ccceeeEEeccCCCCchhee
Confidence            89999998888776644422  1     444422 1333 45444 6788999999997 44444443     3445688


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          257 AVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +++..+.| +.++.+-.+|+|.+.|.++
T Consensus       881 ~iaVa~~G-N~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  881 AIAVADKG-NKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             EEEeccCc-chhhHHhcCCcEEEEecCC
Confidence            99999999 9999999999999999998

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=2.5e-07  Score=77.89  Aligned_cols=238  Identities=8%  Similarity=-0.005  Sum_probs=144.1

Q ss_pred             CcceEEEeeeee-CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC---------CcceEEEE
Q 018697           27 DHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG---------ESYGAAIW   96 (351)
Q Consensus        27 ~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~---------~d~~i~vw   96 (351)
                      +.+++++..... .-.+.+.+++....  ++. ..+..-. .-..+ ++|+++.|+++.   +         .+..|.+|
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~--~v~-g~i~~G~-~P~~~-~spDg~~lyva~---~~~~R~~~G~~~d~V~v~   82 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAG--RVL-GMTDGGF-LPNPV-VASDGSFFAHAS---TVYSRIARGKRTDYVEVI   82 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCC--EEE-EEEEccC-CCcee-ECCCCCEEEEEe---ccccccccCCCCCEEEEE
Confidence            445566543321 11278888887763  222 2222111 12234 999999998874   5         67899999


Q ss_pred             EcccccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCccccccc-----
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQ-----  163 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~-----  163 (351)
                      |..         +++.+..+.....       ....++++|+|+.++++- .-+..|.+.|+.+.+....+....     
T Consensus        83 D~~---------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        83 DPQ---------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             ECc---------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            998         6777777654222       234688999999755555 338999999998754322111100     


Q ss_pred             -----------ccCc-c---------cceeee--------------EECC-CCCcEEEeecCCeEEEEEcccCC-----c
Q 018697          164 -----------SSGM-L---------HYLSGG--------------AWDP-HDVNAVAATCESSVQFWDLRSMG-----K  202 (351)
Q Consensus       164 -----------~~~~-~---------~~v~~~--------------~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----~  202 (351)
                                 ..+- .         ......              .|.+ +++++++... |.|.+.|+....     .
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence                       0000 0         001110              1233 6666666555 999999964432     2


Q ss_pred             Cceeec---------ceeEEEEcCCCCCcEEEEec---------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          203 TNSIEH---------AHVRNVDYDTKKKHLLVTAA---------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       203 ~~~~~~---------~~v~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      ...+..         +.+.-++++|+++.+++...         ..+.|.++|..+ .+.+..+.. ...+..++++|++
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dg  310 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDA  310 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCC
Confidence            221111         01455999999985555332         225899999987 656666663 5688999999999


Q ss_pred             CCeEEEee-CCCeEEEEEcCC
Q 018697          265 DGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       265 ~~~l~s~~-~dg~i~iwd~~~  284 (351)
                      ..+|++.. .++.|.++|..+
T Consensus       311 kp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       311 KPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CeEEEEeCCCCCcEEEEECcC
Confidence            42666554 688899999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2e-08  Score=85.75  Aligned_cols=238  Identities=15%  Similarity=0.251  Sum_probs=142.0

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--------
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--------  140 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--------  140 (351)
                      +-+.|||.|.+|++.     ...-|.+|--+         ....++.+ .|. .|.-+.|||+.++ +++=+        
T Consensus       214 tyv~wSP~GTYL~t~-----Hk~GI~lWGG~---------~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~  276 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTF-----HKQGIALWGGE---------SFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEE  276 (698)
T ss_pred             eeEEecCCceEEEEE-----eccceeeecCc---------cHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCc
Confidence            468899999999886     34468899755         56666666 455 5788999999996 33322        


Q ss_pred             ---cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC--ceeecceeEEEE
Q 018697          141 ---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAHVRNVD  215 (351)
Q Consensus       141 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~v~~~~  215 (351)
                         ....++|||+.++..........  +....-.-+.|+.|+++++.-.. ..|.||+..+-.++  ..+....|....
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF~~~~--~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSFPVIK--SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             ccCCCceEEEEEccccchhcceeccC--CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence               12579999999876554443321  11112334589999998887655 56888876543221  111111166666


Q ss_pred             cCCCCCcEEEEecCC-----C----------------------------------------------------eEEEEec
Q 018697          216 YDTKKKHLLVTAADE-----S----------------------------------------------------GIHLWDL  238 (351)
Q Consensus       216 ~~~~~~~~l~~~~~d-----g----------------------------------------------------~i~i~d~  238 (351)
                      |+|.+. +||-=...     .                                                    .+.|+.+
T Consensus       354 wsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  354 WSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             cCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            666654 44322110     0                                                    1223333


Q ss_pred             ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce
Q 018697          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (351)
                      +...-++..+. -...|...+|.|.|.++.+..+.  ..++.+|.++....               ...++..+..  ..
T Consensus       433 reKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~---------------~~~lVk~~dk--~~  494 (698)
T KOG2314|consen  433 REKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK---------------KPSLVKELDK--KF  494 (698)
T ss_pred             eccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC---------------chhhhhhhcc--cc
Confidence            32122222222 23567788899999444443333  34788888874111               1455666644  34


Q ss_pred             EEEEEeCCCCCceEEEe--eeCCeEEEeecC
Q 018697          317 VYGLAWSSREPWIFASL--SYDGRVVVESVK  345 (351)
Q Consensus       317 v~~~~~~~~~~~~l~s~--~~dg~v~vw~~~  345 (351)
                      .+.+.|+|.|+++++.+  |..|.+.++|+.
T Consensus       495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             cceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            68899999999544333  347889999876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=5.1e-08  Score=82.47  Aligned_cols=200  Identities=15%  Similarity=0.163  Sum_probs=129.1

Q ss_pred             cceeeeeeCCCCCc--eEEE-EeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--
Q 018697           66 NEIWDLSSCPFDQR--IFST-VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~--l~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--  140 (351)
                      ..|....|+|.+..  |+.- -...+.+..+++|.+.         ....+.+-.-....=..+.|.+.|.++++..-  
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp---------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP---------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc---------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence            57778889986432  2221 1225677889999987         23333332223333456889999997655431  


Q ss_pred             --------cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcccCCcCceeecce
Q 018697          141 --------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH  210 (351)
Q Consensus       141 --------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~  210 (351)
                              ....++|+++.........      +..++|.+++|.|.++.+++.+  .+-.+.++|++.. ....+..+.
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~  317 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK  317 (561)
T ss_pred             eecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc
Confidence                    1256788888732222111      2234899999999998877654  6788999999965 444444333


Q ss_pred             eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee------CCCeEEEEEc
Q 018697          211 VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG------TDSTVNLWLV  282 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~iwd~  282 (351)
                      -+.+.|+|.++++|+.|-  ..|.+-+||.......+..+.+.  ...-+.|+|++ .++.+..      .|..|+|||+
T Consensus       318 rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         318 RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcceEEEEe
Confidence            677889999995555333  34789999987533333355432  34556799999 7776654      3889999999


Q ss_pred             CC
Q 018697          283 ST  284 (351)
Q Consensus       283 ~~  284 (351)
                      ..
T Consensus       395 ~g  396 (561)
T COG5354         395 YG  396 (561)
T ss_pred             cC
Confidence            75

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.08  E-value=8.4e-07  Score=84.83  Aligned_cols=289  Identities=13%  Similarity=0.116  Sum_probs=164.7

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc----c-------cCC----
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE----L-------YGQ----  104 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~----~-------~~~----  104 (351)
                      ..|.|.++..+++.........-.-+..|.+++||||++.|+.++    .++++.+.+-.-    +       .+.    
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~V  170 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHV  170 (928)
T ss_pred             CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCcee
Confidence            456777775554333333333445578999999999999998873    455655543221    0       000    


Q ss_pred             ------C----CCCccee--------------eeeeeccccceeEEEecCCCCCcEEEEe---cC---CcEEEEEcCCCC
Q 018697          105 ------L----NSPQLER--------------IAALDAHVGKINCVLWWSSGRHDKLVSI---DE---ENIFLWSLDCSN  154 (351)
Q Consensus       105 ------~----~~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~d---~~v~iwd~~~~~  154 (351)
                            +    ....++.              ...+. +.+.-..++|-.||.+ +++++   ..   ..++||+-+ + 
T Consensus       171 sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y-FAVss~~~~~~~~R~iRVy~Re-G-  246 (928)
T PF04762_consen  171 SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY-FAVSSVEPETGSRRVIRVYSRE-G-  246 (928)
T ss_pred             eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE-EEEEEEEcCCCceeEEEEECCC-c-
Confidence                  0    0000000              01122 3445567899999996 44443   22   578999876 2 


Q ss_pred             CCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEEcccCCcCceeec----ce--eEEEEcCCCCCcEEE
Q 018697          155 KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEH----AH--VRNVDYDTKKKHLLV  225 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~----~~--v~~~~~~~~~~~~l~  225 (351)
                      ....... .   ...--.+++|.|.|+.|++.-.   ...|.+|. ++|.....|..    ..  +..++|++++. +|+
T Consensus       247 ~L~stSE-~---v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLA  320 (928)
T PF04762_consen  247 ELQSTSE-P---VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILA  320 (928)
T ss_pred             eEEeccc-c---CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC-EEE
Confidence            2222211 1   1113446799999998887653   35566665 33443333332    11  99999999998 788


Q ss_pred             EecCCCeEEEEecccCCcce-eEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC--CCC------CCCccc
Q 018697          226 TAADESGIHLWDLRMLKAPI-QELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN--HDE------LPSESL  295 (351)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~------~~~~~~  295 (351)
                      .-..|. |.+|-..+..=.+ +++. .....+..+.|+|..+..|.....+|.+..++.....  +..      .....-
T Consensus       321 v~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI  399 (928)
T PF04762_consen  321 VWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVI  399 (928)
T ss_pred             EEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEE
Confidence            776654 9999987633122 2222 1233455699999887778888887777665543211  000      000000


Q ss_pred             ccCCcc-------cccccc--eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          296 VESPNQ-------RANSLL--NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       296 ~~~~~~-------~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++..-+       ....++  ..+. -..+|.+++|++++. .+++-..||.|.+|...
T Consensus       400 DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  400 DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEec
Confidence            000000       001111  2222 246799999999987 68888899999999854

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.08  E-value=1.4e-09  Score=84.11  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=101.3

Q ss_pred             CCCcEEEeecCCeEEEEEcccCCc-Cceeecce--eEEEEcCCCCCcEEEEec-----CCCeEEEEecccCCcceeEeeC
Q 018697          179 HDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH--VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       179 ~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~--v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      .++.++++..||.+.+++.+.-.. ...+...+  -.+.+....+. ++.++.     .-+..+.|+++..+..+...+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc
Confidence            356788999999999999876211 11222112  22333334444 333222     2245666776642222222222


Q ss_pred             CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceE
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (351)
                       ...|.+++-+|..+.++++|+.||.+-+||.+..                  ..+...++.|+.+++.+-|+|..+..|
T Consensus       179 -~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~------------------~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  179 -LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV------------------AMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             -cccchhhhCCcccccEEEEecCCCeEEEEEcccc------------------cchHHHHHHhhhhhhheeccCCCchhe
Confidence             2349999999988789999999999999999981                  345667789999999999999877789


Q ss_pred             EEeeeCCeEEEeecC
Q 018697          331 ASLSYDGRVVVESVK  345 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~  345 (351)
                      +++++||.+-.||..
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999987

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=7e-10  Score=89.03  Aligned_cols=139  Identities=12%  Similarity=0.075  Sum_probs=106.2

Q ss_pred             EEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC----CcceeEeeCCCCceeEE
Q 018697          184 VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML----KAPIQELPGHTHWTWAV  258 (351)
Q Consensus       184 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~  258 (351)
                      ++.+.+-.+-+-|++++-. ..+.... |.++.|...++ ++..|+.+|.|..+|+|..    +.+.+.+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            4556677888889988743 3333233 88999988787 8999999999999999974    23555554 89999999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc---ceeeccccceEEE--EEeCCCCCceEEEe
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSVYG--LAWSSREPWIFASL  333 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~~l~s~  333 (351)
                      ..-...+.+|++.+.+|.|++||.+.                   .++   +.++.+|.+.-.-  +...+... .++++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~-------------------~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~  364 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRA-------------------TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSV  364 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehh-------------------hhcccceeeeecccccccccccccccccc-eEEEc
Confidence            87663338999999999999999998                   555   8888888543332  23345555 78889


Q ss_pred             eeCCeEEEeecC
Q 018697          334 SYDGRVVVESVK  345 (351)
Q Consensus       334 ~~dg~v~vw~~~  345 (351)
                      |.|...|||.++
T Consensus       365 GdDcytRiWsl~  376 (425)
T KOG2695|consen  365 GDDCYTRIWSLD  376 (425)
T ss_pred             cCeeEEEEEecc
Confidence            999999999997

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=1.7e-07  Score=74.09  Aligned_cols=199  Identities=10%  Similarity=0.153  Sum_probs=119.7

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc---cceeEEEecCCCCCcEEEEecCCcEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV---GKINCVLWWSSGRHDKLVSIDEENIF  146 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~d~~v~  146 (351)
                      .++.+++|+.|++.     .|..|.|-...++..       ..+.....++   -.=..++|+||+. +++.+...|+|+
T Consensus         2 ~~~~~~~Gk~lAi~-----qd~~iEiRsa~Ddf~-------si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~   68 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-----QDQCIEIRSAKDDFS-------SIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIR   68 (282)
T ss_pred             ceeecCCCcEEEEE-----eccEEEEEeccCCch-------heeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEE
Confidence            45677888888776     777887777653221       1122222222   2346799999999 344555679999


Q ss_pred             EEEcCCCCCCccccccc--ccCcccceeeeEECCCC------CcEEEeecCCeEEEEEcccC-----CcCceeec----c
Q 018697          147 LWSLDCSNKNAQVQSKQ--SSGMLHYLSGGAWDPHD------VNAVAATCESSVQFWDLRSM-----GKTNSIEH----A  209 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~----~  209 (351)
                      ++|+.... ...+....  .......|.++.|.+..      ..|++-...|.++-|-+..+     +....+..    +
T Consensus        69 vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp  147 (282)
T PF15492_consen   69 VFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP  147 (282)
T ss_pred             EEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence            99998422 11111111  11223467777775432      24677777888877765432     22223321    2


Q ss_pred             e-eEEEEcCCCCCcEEEEec-CCC----------eEEEEecccCC----------cc---------e------eEe---e
Q 018697          210 H-VRNVDYDTKKKHLLVTAA-DES----------GIHLWDLRMLK----------AP---------I------QEL---P  249 (351)
Q Consensus       210 ~-v~~~~~~~~~~~~l~~~~-~dg----------~i~i~d~~~~~----------~~---------~------~~~---~  249 (351)
                      + |.++.++|..+ +|++|+ +..          -+..|.+-...          ..         +      ..+   .
T Consensus       148 ~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~  226 (282)
T PF15492_consen  148 HGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG  226 (282)
T ss_pred             CceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence            2 99999999998 555554 322          24445432210          00         0      000   1


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .....|..|..+|+| .+|++...+|.|.+|++..
T Consensus       227 ~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCc
Confidence            134678999999999 9999999999999999987

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.06  E-value=4e-09  Score=86.40  Aligned_cols=154  Identities=14%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee----cce-eEEEEcCCCCCcEEE--EecCCCeEEEEecccCC
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----HAH-VRNVDYDTKKKHLLV--TAADESGIHLWDLRMLK  242 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~-v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~  242 (351)
                      ....+..++.+++++++..+....+++.+.......+.    ... ...+.+..+....++  ..++...+.+|....  
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            34445667788888888888887788777554311111    111 344444444442222  223334455555443  


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-ccccceEEEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLA  321 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~  321 (351)
                      .+...+-+|-+-++.|+|+||+ ++++++..|..|++-....                   .-.+..+ -+|..-|..++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa-------------------~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPA-------------------TFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCc-------------------ccchhhhccccHhheeeee
Confidence            3445566899999999999999 9999999999999977765                   3334444 47999999999


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          322 WSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .-++.  .|+++|.|++|++||+.+.
T Consensus       202 l~~~~--~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  202 LTDNY--LLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             eccCc--eeeecCCCCcEEEEecccC
Confidence            98864  5899999999999999753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.05  E-value=6.1e-09  Score=85.34  Aligned_cols=154  Identities=18%  Similarity=0.228  Sum_probs=98.6

Q ss_pred             eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC---eEEEEEcccC
Q 018697          124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES---SVQFWDLRSM  200 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~  200 (351)
                      ..+..++.++ +++.+..+....++++....+..+.....  .....-+++.|..+......+..-|   .+.+|....+
T Consensus        66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3444566666 23333344555566665433322221111  0111345556666666666654444   4445554443


Q ss_pred             CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      .+...  .+|   +..++|+||++ +++++..|..|++-.... ...+..+- +|+..|..++.-++.  .|+++|.|++
T Consensus       143 ~~~~~--lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~t  216 (390)
T KOG3914|consen  143 RCEPI--LGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKT  216 (390)
T ss_pred             Ccchh--hhhhhhhheeeecCCCC-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCc--eeeecCCCCc
Confidence            33322  355   99999999998 899999999999988875 33445444 799999999998864  6899999999


Q ss_pred             EEEEEcCCCC
Q 018697          277 VNLWLVSTSN  286 (351)
Q Consensus       277 i~iwd~~~~~  286 (351)
                      |++||+.++.
T Consensus       217 lr~Wd~~sgk  226 (390)
T KOG3914|consen  217 LRLWDITSGK  226 (390)
T ss_pred             EEEEecccCC
Confidence            9999999843

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.02  E-value=9.2e-08  Score=74.55  Aligned_cols=189  Identities=6%  Similarity=-0.030  Sum_probs=123.9

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-CCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~  212 (351)
                      +++++..|...+|...+.+.........    ...|+-+.- .-..-.+..++.|.++++.++.-+........+.  ..
T Consensus        87 la~gG~~g~fd~~~~~tn~~h~~~cd~s----nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   87 LADGGASGQFDLFACNTNDGHLYQCDVS----NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             EEeccccceeeeecccCcccceeeeccc----ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            4555778999999998654333322211    111111110 0012236777889999999887655444443333  88


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE--eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  290 (351)
                      +++++++++ ++++.+....|..|.+......+..  ....+..-.+..|+... ..+|++..||++.|||++..     
T Consensus       163 s~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~-----  235 (344)
T KOG4532|consen  163 SLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM-----  235 (344)
T ss_pred             eeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc-----
Confidence            999999999 7888888889999998865543333  22344555778899888 99999999999999999972     


Q ss_pred             CCcccccCCcccccccc----eeeccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCccc
Q 018697          291 PSESLVESPNQRANSLL----NSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~~  348 (351)
                                   +.+.    .+-..|.+.++.+.|++.|.. +|.-.-.=+.+.+-|++.+.
T Consensus       236 -------------~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  236 -------------ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             -------------ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence                         2222    222458889999999986642 23333334677888877643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.01  E-value=5.4e-10  Score=96.73  Aligned_cols=208  Identities=14%  Similarity=0.215  Sum_probs=138.6

Q ss_pred             cceeeeeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE----e
Q 018697           66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS----I  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~----~  140 (351)
                      ..+.|++++-+.. -|+++   |..+|.|.+-.+....       ..--....+|...+++++|++-....++++    -
T Consensus        57 qy~kcva~~y~~d~cIlav---G~atG~I~l~s~r~~h-------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr  126 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAV---GSATGNISLLSVRHPH-------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR  126 (783)
T ss_pred             CCceeehhhcCCchhhhhh---ccccCceEEeecCCcc-------cccceecccccccccccccccccHHHHHhhhhhhc
Confidence            4566776654433 55555   5788999998877321       111233457888999999999766556666    2


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecceeEEEEcCCC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAHVRNVDYDTK  219 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~v~~~~~~~~  219 (351)
                      .|..+.|||+.+.-...........+......+++|..+.+.+++|.....+.++|++... ....+....+..+.+.|-
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~  206 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF  206 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence            3678999999864211111111111123356688999999999999999999999999432 233333222778888885


Q ss_pred             CCcEEEEecCCCeEEEEe-cccCCcceeEeeCCCC----ceeEEEecCCCCCeEEEeeCC-CeEEEEEcCC
Q 018697          220 KKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTH----WTWAVCCNPEYDGFILSAGTD-STVNLWLVST  284 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~  284 (351)
                      ..++++ ...||.|.+|| .++...++..+...+.    .+..++|.|....++++...| ++|+++|+..
T Consensus       207 ~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  207 SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            444555 55599999999 6655556655543333    389999999876778877765 4899999986

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=2e-09  Score=86.45  Aligned_cols=148  Identities=17%  Similarity=0.215  Sum_probs=108.2

Q ss_pred             EecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-----C
Q 018697          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-----G  201 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~  201 (351)
                      +|+-+-...-++.+.+-.|-+-++.++.... +..      ...|.++.|...++.++.|+.+|.|..+|++.+     .
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~s------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQS------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW  290 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc-ccc------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence            6664433223344667889999998753322 111      237999999988999999999999999999975     3


Q ss_pred             cCceeecce-eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcc---eeEeeCCCCceeEEE--ecCCCCCeEEEeeCC
Q 018697          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVC--CNPEYDGFILSAGTD  274 (351)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d  274 (351)
                      +...+.++. |+++..-. +++ .|++.+.+|+|++||+|. .+.   +.++++|-..-.-+-  ..+.. ..+++++.|
T Consensus       291 ~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD  367 (425)
T KOG2695|consen  291 CAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD  367 (425)
T ss_pred             ceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeeehh-hhcccceeeeeccccccccccccccccc-ceEEEccCe
Confidence            444444444 77777766 555 677788999999999996 445   788888875543333  35555 788899999


Q ss_pred             CeEEEEEcCC
Q 018697          275 STVNLWLVST  284 (351)
Q Consensus       275 g~i~iwd~~~  284 (351)
                      ...|||.++.
T Consensus       368 cytRiWsl~~  377 (425)
T KOG2695|consen  368 CYTRIWSLDS  377 (425)
T ss_pred             eEEEEEeccc
Confidence            9999999998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=3.4e-08  Score=78.56  Aligned_cols=219  Identities=14%  Similarity=0.201  Sum_probs=134.5

Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc------------ccceeeeEECCCCC--cEE
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM------------LHYLSGGAWDPHDV--NAV  184 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~  184 (351)
                      ....|+++.|...|.+ +.++...|.|.+|.-.....+.--+.....+|            ...|..+.|..++.  .++
T Consensus        25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            3457899999999884 33334468999998764332211111122222            23578888876543  477


Q ss_pred             EeecCCeEEEEEcccCCc-------------------C-----------------------ceeecce---eEEEEcCCC
Q 018697          185 AATCESSVQFWDLRSMGK-------------------T-----------------------NSIEHAH---VRNVDYDTK  219 (351)
Q Consensus       185 ~~~~d~~i~iwd~~~~~~-------------------~-----------------------~~~~~~~---v~~~~~~~~  219 (351)
                      ..+.|.+|++|.+.....                   +                       +.....|   ++++.|+.+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            888999999998864310                   0                       0000123   889999988


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeE--eeCCC-----CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHT-----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      .. .++ ...|=.|.+|++.........  ++.|.     .-|++..|+|..-.++.-.+..|.|++-|++....-....
T Consensus       184 ~e-t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         184 KE-TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             hh-eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            87 455 456778999998865543332  33443     3578999999876777777889999999998521100000


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ......   ..+.-..-+..-...|..+.|+++|+ ++++-.. -+|++||++
T Consensus       262 klfe~~---~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiwDvn  309 (460)
T COG5170         262 KLFELT---IDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIWDVN  309 (460)
T ss_pred             hhhhhc---cCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEEecc
Confidence            000000   00111111223345688999999998 6776654 589999986

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.92  E-value=1.7e-06  Score=74.66  Aligned_cols=259  Identities=12%  Similarity=0.141  Sum_probs=135.5

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee-eeec--
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-ALDA--  118 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~--  118 (351)
                      +.+.++++....  .  ..+......+....|||+++.++.+     .++.|.+++...         ....+ +..+  
T Consensus        23 ~~y~i~d~~~~~--~--~~l~~~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~---------~~~~~lT~dg~~   84 (353)
T PF00930_consen   23 GDYYIYDIETGE--I--TPLTPPPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLAT---------GQETQLTTDGEP   84 (353)
T ss_dssp             EEEEEEETTTTE--E--EESS-EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTT---------SEEEESES--TT
T ss_pred             eeEEEEecCCCc--e--EECcCCccccccceeecCCCeeEEE-----ecCceEEEECCC---------CCeEEeccccce
Confidence            456666666532  2  2222226788899999999999887     567888888752         11111 1111  


Q ss_pred             -----c---------ccceeEEEecCCCCCcEEEEecCCcEEEEEcC---------------------------------
Q 018697          119 -----H---------VGKINCVLWWSSGRHDKLVSIDEENIFLWSLD---------------------------------  151 (351)
Q Consensus       119 -----h---------~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~---------------------------------  151 (351)
                           -         -+.-..+-||||++++++..-++..|..+.+.                                 
T Consensus        85 ~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~  164 (353)
T PF00930_consen   85 GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD  164 (353)
T ss_dssp             TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred             eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence                 0         01225688999999755554555554444332                                 


Q ss_pred             --CCCCCcccccccccCcccceeeeEECCCCCcEEEee--c---CCeEEEEEcccCCcCceeecce------eEEEEcC-
Q 018697          152 --CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--C---ESSVQFWDLRSMGKTNSIEHAH------VRNVDYD-  217 (351)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~---d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~-  217 (351)
                        ++.............-...+..+.|.+++..+++.-  .   ...+.++|..++..........      .....+. 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~  244 (353)
T PF00930_consen  165 LASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLG  244 (353)
T ss_dssp             SSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-T
T ss_pred             CCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccccc
Confidence              111100000000011123577788988888444432  2   2356677887765543333111      2344443 


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeE-EEecCCCCCeEEEeeCCC--eEEEEEcCCCCCCCCCCcc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  294 (351)
                      +++..++.....+|.-+||-+...+...+.+....-.|.. +.++++++.+++++..+.  .-.+|.+...         
T Consensus       245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~---------  315 (353)
T PF00930_consen  245 PDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD---------  315 (353)
T ss_dssp             TTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT---------
T ss_pred             CCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC---------
Confidence            6666566666688866666555434445566555556744 678888756666776633  4455554431         


Q ss_pred             cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                              .+..+..+......-..+.|||++++++.+++.
T Consensus       316 --------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  316 --------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             --------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             --------CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence                    012233333222211689999999976666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.91  E-value=2.3e-06  Score=72.23  Aligned_cols=189  Identities=13%  Similarity=0.072  Sum_probs=122.7

Q ss_pred             eeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee---ee-ccc-----cceeEEE-ecC-CCCCcEEEEe
Q 018697           72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA---LD-AHV-----GKINCVL-WWS-SGRHDKLVSI  140 (351)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~-~h~-----~~v~~~~-~~~-~~~~~~~~~~  140 (351)
                      ..+.||++++..     ..|.|.+||-+++       ..+.+..   +. ..+     .+..-+. |++ +|.  +++--
T Consensus       273 ~~nsDGkrIvFq-----~~GdIylydP~td-------~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd--~ia~V  338 (668)
T COG4946         273 NANSDGKRIVFQ-----NAGDIYLYDPETD-------SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD--YIALV  338 (668)
T ss_pred             ccCCCCcEEEEe-----cCCcEEEeCCCcC-------cceeeecCCccccccccccccCHHHhhhhhccCCCc--EEEEE
Confidence            346788888874     6678999987632       1111100   00 001     1111111 333 344  33332


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-eEEEEEcccCCcCceeecce-eEEEEcCC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGKTNSIEHAH-VRNVDYDT  218 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~-v~~~~~~~  218 (351)
                      ..|...|.+...+- ..++      ++...|.-..+..+++.++.|..|| .+-++|.++++.......-. |.++..+|
T Consensus       339 SRGkaFi~~~~~~~-~iqv------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~  411 (668)
T COG4946         339 SRGKAFIMRPWDGY-SIQV------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP  411 (668)
T ss_pred             ecCcEEEECCCCCe-eEEc------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC
Confidence            34778887766321 1111      2233577677777777899999888 99999999886544433222 99999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC----eEEEEEcCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----TVNLWLVST  284 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~  284 (351)
                      +|+ .++++.....|.++|+.+ +.+...-+...+-|+...|+|++ +++|-+--+|    .|+++|+..
T Consensus       412 dGK-~~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         412 DGK-KVVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CCc-EEEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCC
Confidence            998 688888889999999997 54333223456779999999999 9999776655    689999986

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=3.9e-07  Score=81.21  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=160.5

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC----------CCcE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG----------RHDK  136 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~  136 (351)
                      .-.++.|+|.| .++.     +....|.+-|..         +.+.+..+..|...|+.+.|.|..          ..++
T Consensus        17 N~~A~Dw~~~G-LiAy-----gshslV~VVDs~---------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ll   81 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAY-----GSHSLVSVVDSR---------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLL   81 (1062)
T ss_pred             cccccccCccc-eEEE-----ecCceEEEEehh---------hhhhhhccccCccceeEEEeccCCCchhccCcccccee
Confidence            35678899977 4444     345578898987         788999999999999999998742          2345


Q ss_pred             EEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC---CC-CcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018697          137 LVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       137 ~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      +++ ...|.|.+||.........+.     .+..++..++|-+   +. ..|++-....++.+|+..+|+.......++ 
T Consensus        82 iAsaD~~GrIil~d~~~~s~~~~l~-----~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLASVINWLS-----HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             EEeccccCcEEEEEehhhhhhhhhc-----CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence            555 447999999998644333332     2345788888855   33 346666788999999999999988888777 


Q ss_pred             -eEEEEcCCCCCcEEEEecCCCeEEEEecccCC---cceeEee---CCCC----------------c---------eeEE
Q 018697          211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELP---GHTH----------------W---------TWAV  258 (351)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~---~~~~----------------~---------v~~~  258 (351)
                       ..|+.+.|-...-+..-+..|.+.+-+.-...   .+.+.++   .|..                .         ...+
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence             67799988765445555556666665542111   1222221   2221                0         1225


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc-eEEEeeeCC
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDG  337 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg  337 (351)
                      +|+|.- +-++-......+.++|++.                   ..++....-..+.+.-+.|-|+.+. .|.+.-.||
T Consensus       237 af~p~~-rn~lfi~~prellv~dle~-------------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG  296 (1062)
T KOG1912|consen  237 AFSPHW-RNILFITFPRELLVFDLEY-------------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG  296 (1062)
T ss_pred             hcChhh-hceEEEEeccceEEEcchh-------------------hceeEEEEeccCCcceeEeccCCCcceEEEEecCC
Confidence            567776 3333344566799999998                   6777777655555666777776542 566777899


Q ss_pred             eEEEeecCc
Q 018697          338 RVVVESVKP  346 (351)
Q Consensus       338 ~v~vw~~~~  346 (351)
                      .+.+|--+.
T Consensus       297 ~ltirvrk~  305 (1062)
T KOG1912|consen  297 RLTIRVRKE  305 (1062)
T ss_pred             eEEEEEeec
Confidence            999997544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.1e-06  Score=75.38  Aligned_cols=261  Identities=10%  Similarity=0.141  Sum_probs=151.1

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      +...+.+|++...........+......-.-..||.|+++++...     ...|.||+..         ...++..-...
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-----~~sisIyEtp---------sf~lld~Kslk  345 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-----GNSISIYETP---------SFMLLDKKSLK  345 (698)
T ss_pred             CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec-----cceEEEEecC---------ceeeecccccC
Confidence            336677787776432222122111112223458999999988762     2589999977         43333222234


Q ss_pred             ccceeEEEecCCCCCcEEEE---ecC---CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----
Q 018697          120 VGKINCVLWWSSGRHDKLVS---IDE---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----  188 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~---~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----  188 (351)
                      -..|....|+|.+.  ++|-   ..+   ..+.+-.+.+...+.....     +.-.=..+.|-.+|.+|..-..     
T Consensus       346 i~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nl-----fnVsDckLhWQk~gdyLcvkvdR~tK~  418 (698)
T KOG2314|consen  346 ISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNL-----FNVSDCKLHWQKSGDYLCVKVDRHTKS  418 (698)
T ss_pred             CccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeeccc-----eeeeccEEEeccCCcEEEEEEEeeccc
Confidence            46788899999977  4432   111   2344555543322211111     1111223567778888775421     


Q ss_pred             --C---CeEEEEEcccCCc-Cceeecce-eEEEEcCCCCCcEEEEecC--CCeEEEEeccc-CCc--ceeEeeCCCCcee
Q 018697          189 --E---SSVQFWDLRSMGK-TNSIEHAH-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRM-LKA--PIQELPGHTHWTW  256 (351)
Q Consensus       189 --d---~~i~iwd~~~~~~-~~~~~~~~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~-~~~--~~~~~~~~~~~v~  256 (351)
                        .   ..+.|+.++.... +....... +...+|-|.|..+.+..++  ..++.+|.+++ ..+  .+..+.  ....+
T Consensus       419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N  496 (698)
T KOG2314|consen  419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFAN  496 (698)
T ss_pred             cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccc
Confidence              1   2455677765543 33333333 8999999999843333332  35799998873 222  233333  35678


Q ss_pred             EEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccccccee-eccccceEEEEEeCCCCCceEEE
Q 018697          257 AVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      .+.|+|.| ++++.+.   ..|.+.++|+..                   ..+..+ ...|. ..+.+.|.|.|+ ++++
T Consensus       497 ~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~-------------------a~~k~~~~~eh~-~at~veWDPtGR-YvvT  554 (698)
T KOG2314|consen  497 TVFWSPKG-RFVVVAALVSRRGDLEFYDTDY-------------------ADLKDTASPEHF-AATEVEWDPTGR-YVVT  554 (698)
T ss_pred             eEEEcCCC-cEEEEEEecccccceEEEecch-------------------hhhhhccCcccc-ccccceECCCCC-EEEE
Confidence            89999999 7776653   478899999985                   222222 22343 367899999999 7777


Q ss_pred             eee------CCeEEEeecC
Q 018697          333 LSY------DGRVVVESVK  345 (351)
Q Consensus       333 ~~~------dg~v~vw~~~  345 (351)
                      ++.      |.--++|++.
T Consensus       555 ~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  555 SSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             eeehhhhccccceEEEEee
Confidence            764      4445666664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.6e-07  Score=76.15  Aligned_cols=248  Identities=15%  Similarity=0.112  Sum_probs=145.7

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      .+.+|...|.+++|+|..+-|+..   ++.+.+|+|.|++         +...+..+..+ ..+++++|.-+..+.+.++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~---asl~nkiki~dle---------t~~~vssy~a~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGL---ASLGNKIKIMDLE---------TSCVVSSYIAY-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             cccccchhhhhhccCccccceeee---eccCceEEEEecc---------cceeeeheecc-CCceeeeeccCCcceeEEe
Confidence            455678899999999998865554   3789999999999         55667777777 7899999999998877777


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC------CCCCcEEEeecCCeEEEEEccc----CCcCceeecc
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD------PHDVNAVAATCESSVQFWDLRS----MGKTNSIEHA  209 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~  209 (351)
                      -.+|.|.|||++........+...  -...+|..++.-      +.+..++....+  +..|.+..    ..++..+...
T Consensus       255 l~nG~VlvyD~R~~~~~~~e~~a~--~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPLMELVAN--VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             ccCceEEEEEccCCCchHhhhhhh--hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence            789999999999654333222221  011244443332      223333333322  34455432    2222333322


Q ss_pred             e-eEEEEcCCCCCcEEEEecCCCe------EEE-EecccCCcceeE-eeCC-CCc------eeEEEecCCCCCeEEEeeC
Q 018697          210 H-VRNVDYDTKKKHLLVTAADESG------IHL-WDLRMLKAPIQE-LPGH-THW------TWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       210 ~-v~~~~~~~~~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~-~~~~-~~~------v~~~~~~~~~~~~l~s~~~  273 (351)
                      . ..++++++..+.++++.-.+.+      |-. .|.+. +.++.. -.++ ...      -..+.-.++...++..++.
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~  409 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS  409 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence            2 6677777766666766554321      111 11111 222211 1112 111      0112123444234445666


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC-CCCceEEEeeeCCeEEEeecCc
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      -+.+.+||..+                   .+.+.++.- ..+|.++.... ++..+|+.-. |..++||+.+.
T Consensus       410 tn~lil~D~~s-------------------~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  410 TNELILQDPHS-------------------FEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             cceeEEeccch-------------------hheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            77999999998                   788888754 46788776543 4443565554 66889887653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.88  E-value=1.1e-06  Score=74.76  Aligned_cols=203  Identities=9%  Similarity=0.038  Sum_probs=130.1

Q ss_pred             CcceeeeeeCCCCCceEEEEeecC-----------CcceEEEEEcccccCCCCCCcceeeeeeeccccc--ee-EEEecC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTG-----------ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK--IN-CVLWWS  130 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~-----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~  130 (351)
                      ...|..+.|+|.+++|.+=...+-           .+..+.+||+.         .+..+..+.....+  .+ -+.|+.
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~---------sg~iv~sf~~~~q~~~~Wp~~k~s~  141 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA---------SGMIVFSFNGISQPYLGWPVLKFSI  141 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc---------CceeEeeccccCCcccccceeeeee
Confidence            457889999999988876421111           22358999998         67777777766655  55 678888


Q ss_pred             CCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc--EEEe-----ecCCeEEEEEcccCCcC
Q 018697          131 SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN--AVAA-----TCESSVQFWDLRSMGKT  203 (351)
Q Consensus       131 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~-----~~d~~i~iwd~~~~~~~  203 (351)
                      +..+  ++=-....++|+++. +.........-.   ...+....|+|.++.  |+.-     +.++.+++|.+..+..+
T Consensus       142 ~D~y--~ARvv~~sl~i~e~t-~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l  215 (561)
T COG5354         142 DDKY--VARVVGSSLYIHEIT-DNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL  215 (561)
T ss_pred             cchh--hhhhccCeEEEEecC-CccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence            8874  332234679999973 222211111111   236888899997433  3332     35789999999865544


Q ss_pred             ceeecce--eEEEEcCCCCCcEEEEec----------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE-
Q 018697          204 NSIEHAH--VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-  270 (351)
Q Consensus       204 ~~~~~~~--v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-  270 (351)
                      .+-..-.  -..+.|++.|.++++-.-          ....+++++++.  +.+.......++|...+|.|.+.++.+. 
T Consensus       216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEe
Confidence            4332222  457889999986554322          124688898874  2333333567899999999998444333 


Q ss_pred             eeCCCeEEEEEcCC
Q 018697          271 AGTDSTVNLWLVST  284 (351)
Q Consensus       271 ~~~dg~i~iwd~~~  284 (351)
                      |-.+-.+.++|++.
T Consensus       294 g~~pa~~s~~~lr~  307 (561)
T COG5354         294 GYMPASVSVFDLRG  307 (561)
T ss_pred             cccccceeeccccc
Confidence            34677899999986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=4.6e-09  Score=58.63  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      +++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            56788999999999999999988 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.2e-08  Score=56.90  Aligned_cols=38  Identities=21%  Similarity=0.492  Sum_probs=35.8

Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                      +++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            4678899999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.82  E-value=3.9e-06  Score=73.33  Aligned_cols=221  Identities=11%  Similarity=0.037  Sum_probs=126.0

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccce-----eEEEecCCCCCcEEEEecCCcEEEEEcC
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~~~~~~d~~v~iwd~~  151 (351)
                      +..+++.    ..++.+..||..         +++.+-.+......+     .+.... ++  .++++..++.+..+|+.
T Consensus       145 ~~~v~v~----~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       145 NGLVVVR----TNDGRLTALDAA---------TGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             CCEEEEE----CCCCeEEEEEcC---------CCceeeEEccCCCceeecCCCCCEEE-CC--EEEEECCCCEEEEEEcc
Confidence            3455553    578889999987         344433332211111     011111 22  25666678899999988


Q ss_pred             CCCCCcccccccccCcc--cceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEe
Q 018697          152 CSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       152 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  227 (351)
                      ++............+..  ..+..+.-+|  .+..+++++.+|.++.||+++++...............  .+. .++.+
T Consensus       209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~-~vyv~  285 (377)
T TIGR03300       209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDN-RLYVT  285 (377)
T ss_pred             CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCC-EEEEE
Confidence            76544332111100000  0000000011  24578888889999999999988766554222222222  344 56778


Q ss_pred             cCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018697          228 ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      +.+|.+..+|..+ ++.+....... ........  .+ ..+++++.+|.|.++|..+                   ++.
T Consensus       286 ~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~t-------------------G~~  342 (377)
T TIGR03300       286 DADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSRED-------------------GSF  342 (377)
T ss_pred             CCCCeEEEEECCC-CcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCC-------------------CCE
Confidence            8999999999986 54444432111 11222222  34 6888899999999999988                   888


Q ss_pred             ceeeccccceEEE-EEeCCCCCceEEEeeeCCeEEEe
Q 018697          307 LNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       307 ~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      +..++.+...+.. ..+. ++  .|+.++.||.|+.+
T Consensus       343 ~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~  376 (377)
T TIGR03300       343 VARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence            8777665543322 2222 33  47788889998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.80  E-value=3.3e-09  Score=92.01  Aligned_cols=202  Identities=18%  Similarity=0.283  Sum_probs=133.7

Q ss_pred             ccceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEee----cCCeEE
Q 018697          120 VGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAAT----CESSVQ  193 (351)
Q Consensus       120 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~----~d~~i~  193 (351)
                      ...+.|++++-+.. .++.+|..+|.|.+-.+.........   ..+++....++++|++-+. .|++|-    .|..+.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E---~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE---VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce---ecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            34566777766554 44556677899999888754333111   1234566899999998544 455542    467899


Q ss_pred             EEEcccC--CcC--ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC
Q 018697          194 FWDLRSM--GKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (351)
Q Consensus       194 iwd~~~~--~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (351)
                      |||+.++  .+.  ..+..+.   ..+++|..+.+ ++.+|.....+.++|+|........  ..+..+..+..+|-...
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPN  209 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCC
Confidence            9999876  221  1222111   77899998887 8888999999999999952222222  23456777888885447


Q ss_pred             eEEEeeCCCeEEEEEc-CCCCCCCCCCcccccCCcccccccceeecccc----ceEEEEEeCCCCCceEEEeee-CCeEE
Q 018697          267 FILSAGTDSTVNLWLV-STSNHDELPSESLVESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSY-DGRVV  340 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-dg~v~  340 (351)
                      ++++-. ||.|.+||. +.                  ...++..+...+    ..+..++|+|....++++... .++|+
T Consensus       210 Y~cs~~-dg~iAiwD~~rn------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr  270 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRN------------------IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR  270 (783)
T ss_pred             ceeccc-cCceeeccchhh------------------hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence            888766 999999994 33                  123333332222    248899999987777888774 57899


Q ss_pred             EeecCc
Q 018697          341 VESVKP  346 (351)
Q Consensus       341 vw~~~~  346 (351)
                      ++++..
T Consensus       271 lydi~~  276 (783)
T KOG1008|consen  271 LYDICV  276 (783)
T ss_pred             Eecccc
Confidence            998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.76  E-value=4.7e-06  Score=68.16  Aligned_cols=196  Identities=14%  Similarity=0.111  Sum_probs=117.9

Q ss_pred             EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018697          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  204 (351)
                      ++.|.+....++++....+.|..|+..+...  ......      ...++++...+..++++... .+.++|+.+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~------~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP------GPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS------SEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC------CCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEE
Confidence            5678885554444545688999999985322  222211      36677777333556665554 45556988875433


Q ss_pred             eeec---c-e---eEEEEcCCCCCcEEEEecCC--------CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE
Q 018697          205 SIEH---A-H---VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       205 ~~~~---~-~---v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  269 (351)
                      ....   . .   ++.+++.|+|. +.++....        |.|..++..  .+ +..+...-...+.|+|+|+++.+++
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheee
Confidence            3322   1 2   99999999998 66655433        456666665  32 3333333456789999999943455


Q ss_pred             EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +-+..+.|..+++.......            ...+.+..+.........+++..+|. ++++....+.|.+++.+.
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G  214 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGEL------------SNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG  214 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCE------------EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS
T ss_pred             cccccceeEEEeccccccce------------eeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc
Confidence            77788899999986411000            00111222222223478899999998 777777788999988653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2e-07  Score=77.87  Aligned_cols=219  Identities=13%  Similarity=0.010  Sum_probs=144.7

Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-CCeEEEEE
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD  196 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd  196 (351)
                      -|.+.|+.+.-... + +++.++.||.++.|.-...  ....+..+...|...+.+++.+-++..+.+.+. |..++++|
T Consensus         7 mhrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cccceeeeEeeehh-h-eEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            46777776644333 2 3677799999999986531  112222333456678888898988888888776 99999999


Q ss_pred             cccCCcCceeecce---eEEEEcCCCCC--cEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          197 LRSMGKTNSIEHAH---VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +++-..+.-+....   ..+...+|...  .+.++.-.++.+.++|-+... +....-.-|..+|..+.+.+-+ ..+++
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS  161 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS  161 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence            99876655554333   33333344322  134444578999999987544 3334445699999999999999 88999


Q ss_pred             eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       271 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ....|.|.-|.....  -+.+.  ....+......-+..+........++.|+|++. .+++-+.|..|+++.+..
T Consensus       162 iD~~gmVEyWs~e~~--~qfPr--~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGP--FQFPR--TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             ccccceeEeecCCCc--ccCcc--ccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEecc
Confidence            999999999988730  00000  000011011122233333445678999999999 799999999999998764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=2.4e-05  Score=63.91  Aligned_cols=225  Identities=14%  Similarity=0.096  Sum_probs=135.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcc-eEEEEEcccccCCCCCCcceeeeeeecccccee--EEEecCCCCCcEEEE-e-
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKIN--CVLWWSSGRHDKLVS-I-  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~-~-  140 (351)
                      .....++.+|.....++.+   -..| ...+||..         +.+....+....+.-.  .-.|+++|+. ++++ . 
T Consensus         5 ~RgH~~a~~p~~~~avafa---RRPG~~~~v~D~~---------~g~~~~~~~a~~gRHFyGHg~fs~dG~~-LytTEnd   71 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFA---RRPGTFALVFDCR---------TGQLLQRLWAPPGRHFYGHGVFSPDGRL-LYTTEND   71 (305)
T ss_pred             ccccceeeCCCCCeEEEEE---eCCCcEEEEEEcC---------CCceeeEEcCCCCCEEecCEEEcCCCCE-EEEeccc
Confidence            3456778888665555542   3444 46788887         4444444433322221  2579999995 5555 1 


Q ss_pred             ---cCCcEEEEEcCC-CCCCcccccccccCcccceeeeEECCCCCcEEEeec------------------CCeEEEEEcc
Q 018697          141 ---DEENIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------------ESSVQFWDLR  198 (351)
Q Consensus       141 ---~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~  198 (351)
                         ..|.|-|||... ..+..+...     +--....+.+.||++.|+++..                  +-.+.+.|..
T Consensus        72 ~~~g~G~IgVyd~~~~~~ri~E~~s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   72 YETGRGVIGVYDAARGYRRIGEFPS-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             cCCCcEEEEEEECcCCcEEEeEecC-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence               258899999982 222222211     1123456778999988877631                  2345567778


Q ss_pred             cCCcCceeec--c-e---eEEEEcCCCCCcEEEEecCCC-------eEEEEecccCCcceeEee-------CCCCceeEE
Q 018697          199 SMGKTNSIEH--A-H---VRNVDYDTKKKHLLVTAADES-------GIHLWDLRMLKAPIQELP-------GHTHWTWAV  258 (351)
Q Consensus       199 ~~~~~~~~~~--~-~---v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~-------~~~~~v~~~  258 (351)
                      +++.+.....  . |   +..+++.++|. .++.....|       -|-+++...   .+..+.       .-...+-+|
T Consensus       147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSI  222 (305)
T PF07433_consen  147 SGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSI  222 (305)
T ss_pred             CCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEE
Confidence            8887666442  2 2   99999999997 444333322       244444332   222222       234678999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      ++++++..+.+|+=.-+.+.+||..+                   +..+....-.  .+..++-.+++  ++++.+.
T Consensus       223 a~~~~g~~ia~tsPrGg~~~~~d~~t-------------------g~~~~~~~l~--D~cGva~~~~~--f~~ssG~  276 (305)
T PF07433_consen  223 AADRDGRLIAVTSPRGGRVAVWDAAT-------------------GRLLGSVPLP--DACGVAPTDDG--FLVSSGQ  276 (305)
T ss_pred             EEeCCCCEEEEECCCCCEEEEEECCC-------------------CCEeeccccC--ceeeeeecCCc--eEEeCCC
Confidence            99999933445666688999999998                   7776655432  35667766654  4555543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1.7e-08  Score=90.97  Aligned_cols=198  Identities=13%  Similarity=0.223  Sum_probs=139.6

Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (351)
                      .++..++++.|+..-+|++|+-..++ ++.++..|.|+++++.++.....+     ..|...++.+.=+.+|..+++.+.
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeecc
Confidence            34566778889999999999999886 777888899999999986544433     357778999988889988877653


Q ss_pred             C--CeEEEEEccc-CCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-e---CCCCceeEEEec
Q 018697          189 E--SSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-P---GHTHWTWAVCCN  261 (351)
Q Consensus       189 d--~~i~iwd~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~  261 (351)
                      -  --..+|++.. +....++..  -.++.|+..-. .-+.|+......+||+.+ ..++.++ .   +....-+.+.|+
T Consensus      1164 ~S~PlsaLW~~~s~~~~~Hsf~e--d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT-~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE--DKAVKFSNSLQ-FRALGTEADDALLYDVQT-CSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             ccCchHHHhccccccCccccccc--cceeehhhhHH-HHHhcccccceEEEeccc-CcHHHHhcCcchhhhhhccccccC
Confidence            2  3567899864 344444443  45788887765 344466667899999998 5555553 2   122334778899


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEE
Q 018697          262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      |+. .+++-   ||.  +||++.                   .+.++.|...+..+ .-.|+|+|. -++.-+     .|
T Consensus      1240 P~D-~LIln---dGv--LWDvR~-------------------~~aIh~FD~ft~~~-~G~FHP~g~-eVIINS-----EI 1287 (1516)
T KOG1832|consen 1240 PCD-TLILN---DGV--LWDVRI-------------------PEAIHRFDQFTDYG-GGGFHPSGN-EVIINS-----EI 1287 (1516)
T ss_pred             CCc-ceEee---Cce--eeeecc-------------------HHHHhhhhhheecc-cccccCCCc-eEEeec-----hh
Confidence            998 66653   553  799998                   67777776555333 335999998 565555     38


Q ss_pred             eecCccc
Q 018697          342 ESVKPFL  348 (351)
Q Consensus       342 w~~~~~~  348 (351)
                      ||+++|.
T Consensus      1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred             hhhHHHH
Confidence            8888753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=1e-05  Score=72.50  Aligned_cols=187  Identities=13%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC---CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA  115 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  115 (351)
                      +..|.|.++++--..   ....+..|.+.|.+++|-|   +.+.++++.   ....++.+|+..         +++..-.
T Consensus        86 D~~GrIil~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI---h~ss~lvLwntd---------tG~k~Wk  150 (1062)
T KOG1912|consen   86 DISGRIILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAI---HGSSTLVLWNTD---------TGEKFWK  150 (1062)
T ss_pred             cccCcEEEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEe---cCCcEEEEEEcc---------CCceeec
Confidence            456888888877543   2234556778999999966   343455443   455689999987         5666555


Q ss_pred             eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC------ccccccc-c-----------cCccc--------
Q 018697          116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN------AQVQSKQ-S-----------SGMLH--------  169 (351)
Q Consensus       116 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~------~~~~~~~-~-----------~~~~~--------  169 (351)
                      .........|+.+.|-....+...+..|.|.+-+.-...+.      .++...+ .           ..++.        
T Consensus       151 ~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi  230 (1062)
T KOG1912|consen  151 YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI  230 (1062)
T ss_pred             cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence            55555667778999866554555555677776654321111      0010000 0           00000        


Q ss_pred             -ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCC-cEEEEecCCCeEEEEeccc
Q 018697          170 -YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKK-HLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       170 -~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~  240 (351)
                       ....++|+|.-+.++.......+.++|++-..++..+....  +.-+.+-|+++ ..+++...||.+.+|-.+.
T Consensus       231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence             01234778887777777788899999999877776665444  55666666653 3677788899888886543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.67  E-value=2.9e-06  Score=74.00  Aligned_cols=165  Identities=10%  Similarity=0.137  Sum_probs=105.0

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEe-c-C-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSI-D-E-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-  187 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~-d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  187 (351)
                      ....+..-...+..-+|+|++..+....- . . ..+.+++++++.........   +   .-..-+|+|||+.|+... 
T Consensus       184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g---~~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---G---NNGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---C---ccCCccCCCCCCEEEEEEC
Confidence            33444445566777899999997655652 2 2 35999999976554443322   2   444568999999988765 


Q ss_pred             cCC--eEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018697          188 CES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (351)
Q Consensus       188 ~d~--~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  263 (351)
                      .||  .|+++|+..+.... +....  -..-.|+|+|++++++.+..|.-.||-+...+.....+......-....|+|+
T Consensus       258 rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Spd  336 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPD  336 (425)
T ss_pred             CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCC
Confidence            444  56777888766333 33233  44778999999877777777765555554434444555544443347889999


Q ss_pred             CCCeEEEeeC-CCe--EEEEEcCC
Q 018697          264 YDGFILSAGT-DST--VNLWLVST  284 (351)
Q Consensus       264 ~~~~l~s~~~-dg~--i~iwd~~~  284 (351)
                      | .+|+..+. +|.  |.+.|+..
T Consensus       337 G-~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         337 G-DKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             C-CEEEEEeccCCceeeEEeccCC
Confidence            9 66655443 444  56666655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.66  E-value=2.5e-05  Score=73.52  Aligned_cols=203  Identities=10%  Similarity=0.112  Sum_probs=123.0

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      .+.|.++.|..+...++.+    ...|.|.+-|.++          ........-...|.+++|+||+..+.++++ ..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~----~~~G~iilvd~et----------~~~eivg~vd~GI~aaswS~Dee~l~liT~-~~t  132 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVI----TALGDIILVDPET----------LELEIVGNVDNGISAASWSPDEELLALITG-RQT  132 (1265)
T ss_pred             CcceEEEEEecccceEEEE----ecCCcEEEEcccc----------cceeeeeeccCceEEEeecCCCcEEEEEeC-CcE
Confidence            3689999999888877775    4677777777662          223333345678999999999995444443 455


Q ss_pred             EEEEEcC----CCCCC-------ccccccc-------cc---C------------------cccceeeeEECCCCCcEEE
Q 018697          145 IFLWSLD----CSNKN-------AQVQSKQ-------SS---G------------------MLHYLSGGAWDPHDVNAVA  185 (351)
Q Consensus       145 v~iwd~~----~~~~~-------~~~~~~~-------~~---~------------------~~~~v~~~~~~~~~~~l~~  185 (351)
                      +.+-+-.    .....       .+.....       ..   +                  ..+.=+.+.|--||+++++
T Consensus       133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV  212 (1265)
T KOG1920|consen  133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV  212 (1265)
T ss_pred             EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence            5543321    00000       0000000       00   0                  0011234899999999887


Q ss_pred             ee----cC-CeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCc--ceeEeeCCCC
Q 018697          186 AT----CE-SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTH  253 (351)
Q Consensus       186 ~~----~d-~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~  253 (351)
                      ..    .+ ..|++||.+ +..-..-....  -.+++|-|.|. ++++-.   +|+.|.+|..+-...  ....+.....
T Consensus       213 s~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  213 SFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             EEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence            43    24 799999987 43322222111  67899999998 666543   456799988652211  1111222334


Q ss_pred             ceeEEEecCCCCCeEEE---eeCCCeEEEEEcCCC
Q 018697          254 WTWAVCCNPEYDGFILS---AGTDSTVNLWLVSTS  285 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~  285 (351)
                      .+..++|+.++ ..|+.   ......|++|-+.+.
T Consensus       291 ~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  291 EVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             chheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence            58999999999 88887   455556999988763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.65  E-value=2.3e-06  Score=74.44  Aligned_cols=117  Identities=9%  Similarity=0.060  Sum_probs=80.9

Q ss_pred             ccceeEEEecCCCCCcEEEE----ecCCcE----EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018697          120 VGKINCVLWWSSGRHDKLVS----IDEENI----FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~----~~d~~v----~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (351)
                      +....++.|+-...+.+.+-    +.+|.+    .+|++...+ ...+ ..........+.+.+++|+...++.|+.||.
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrv-svtsipL~s~v~~ca~sp~E~kLvlGC~DgS  282 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRV-SVTSIPLPSQVICCARSPSEDKLVLGCEDGS  282 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEE-EEEEEecCCcceEEecCcccceEEEEecCCe
Confidence            34456788887665544443    234433    467766432 2221 1112234458999999999999999999999


Q ss_pred             EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          192 VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      |.+||...+..... +..- +..++|+|+|. ++++|++.|.+.+||+.-
T Consensus       283 iiLyD~~~~~t~~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  283 IILYDTTRGVTLLA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEEcCCCeeeee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence            99999876633222 2122 88999999998 899999999999999864

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.1e-05  Score=73.18  Aligned_cols=196  Identities=11%  Similarity=0.074  Sum_probs=123.2

Q ss_pred             eeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC-----cEE
Q 018697           72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-----NIF  146 (351)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-----~v~  146 (351)
                      +|++.+..++.    |+.+|.|.+.+-.          .+.++.++.+...+...-|.-++..++++-+.|+     .++
T Consensus        30 c~~s~~~~vvi----gt~~G~V~~Ln~s----------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk   95 (933)
T KOG2114|consen   30 CCSSSTGSVVI----GTADGRVVILNSS----------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK   95 (933)
T ss_pred             EEcCCCceEEE----eeccccEEEeccc----------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence            35676767766    4688887777643          4566778888777433445555544344445543     589


Q ss_pred             EEEcCCCCCCc--------ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc---c-CCcCceeecce--eE
Q 018697          147 LWSLDCSNKNA--------QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR---S-MGKTNSIEHAH--VR  212 (351)
Q Consensus       147 iwd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~-~~~~~~~~~~~--v~  212 (351)
                      ||+++..+...        .+.....+....++.+++.+.+-+.+++|-.+|.|..+.-.   . +........+.  |+
T Consensus        96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            99998543222        11111122234578889999888889999999999887522   1 11111111122  99


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+++..++...+.++ ....|.+|.+.........+..|..+++|..|++.. ..+++++. ..+.+||...
T Consensus       176 gL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             eeEEecCCceeEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCC
Confidence            999998888423323 334789999884231244477888899999999876 43444443 3589999886

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=1.3e-05  Score=65.13  Aligned_cols=212  Identities=13%  Similarity=0.041  Sum_probs=121.6

Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ++.|..||..         +++.+-....-  .....+... +++.. +++++.++.+..||..+++.........    
T Consensus         2 ~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~----   66 (238)
T PF13360_consen    2 DGTLSALDPR---------TGKELWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG----   66 (238)
T ss_dssp             TSEEEEEETT---------TTEEEEEEECSSSCSSEEETEE-EETTE-EEEEETTSEEEEEETTTSEEEEEEECSS----
T ss_pred             CCEEEEEECC---------CCCEEEEEECCCCCCCccceEE-EeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc----
Confidence            5677777775         45555444321  111111122 23443 6666789999999998776544443311    


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee-ecc----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                        .+.... ...+..+++++.++.++.+|+++++..... ...    . .........+. .++.+..++.|..+|+++ 
T Consensus        67 --~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~t-  141 (238)
T PF13360_consen   67 --PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKT-  141 (238)
T ss_dssp             --CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTT-
T ss_pred             --ccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCC-
Confidence              111111 123566777778889999999999988774 311    1 11122222255 577788899999999997 


Q ss_pred             CcceeEeeCCCCce-----------eEEEecCCCCCeEEEeeCCCe-EEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018697          242 KAPIQELPGHTHWT-----------WAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (351)
Q Consensus       242 ~~~~~~~~~~~~~v-----------~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                      ++.+..........           ..+.+. ++  .++.++.++. +.+ |..+                   ++.+..
T Consensus       142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t-------------------g~~~w~  198 (238)
T PF13360_consen  142 GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT-------------------GEKLWS  198 (238)
T ss_dssp             TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT-------------------TEEEEE
T ss_pred             CcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC-------------------CCEEEE
Confidence            66776666533221           222233 33  5555666664 555 9988                   654433


Q ss_pred             eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      ..  ...+..+ ...++. .++.++.++.|..||+.+..
T Consensus       199 ~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  199 KP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTE
T ss_pred             ec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCC
Confidence            22  2223332 335555 56666689999999998643

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.62  E-value=5.5e-05  Score=66.12  Aligned_cols=224  Identities=10%  Similarity=-0.013  Sum_probs=123.7

Q ss_pred             CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018697           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (351)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  155 (351)
                      ++..++++    +.++.+..+|..         +++.+-..... ..+.+.-...++.  +++...++.++.||.++++.
T Consensus       104 ~~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~~~p~v~~~~--v~v~~~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       104 DGGLVFVG----TEKGEVIALDAE---------DGKELWRAKLS-SEVLSPPLVANGL--VVVRTNDGRLTALDAATGER  167 (377)
T ss_pred             cCCEEEEE----cCCCEEEEEECC---------CCcEeeeeccC-ceeecCCEEECCE--EEEECCCCeEEEEEcCCCce
Confidence            35566664    578899999976         44444333221 2222111111233  66666789999999988765


Q ss_pred             CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e---EEEEcCC--CCCcEE
Q 018697          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V---RNVDYDT--KKKHLL  224 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v---~~~~~~~--~~~~~l  224 (351)
                      ..+...................  +..++++..++.+..+|+++++.+.......      +   ..+.-+|  .+. .+
T Consensus       168 ~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~v  244 (377)
T TIGR03300       168 LWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QV  244 (377)
T ss_pred             eeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EE
Confidence            4443221100000000111111  2467777888999999999987665433110      0   0111111  233 56


Q ss_pred             EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      +.++.+|.++.||.++ ++.+..... . ....+.  ..+ ..++.++.||.+..+|..+                   +
T Consensus       245 y~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~--~~~-~~vyv~~~~G~l~~~d~~t-------------------G  299 (377)
T TIGR03300       245 YAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPA--VDD-NRLYVTDADGVVVALDRRS-------------------G  299 (377)
T ss_pred             EEEEcCCEEEEEECCC-CcEEEeecc-C-CccCce--EeC-CEEEEECCCCeEEEEECCC-------------------C
Confidence            6678899999999987 544444431 1 112222  234 5777788899999999987                   5


Q ss_pred             ccceeecccc-ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          305 SLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       305 ~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.+....... ....+...  .+. .++.++.+|.|+++|..+
T Consensus       300 ~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       300 SELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             cEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCC
Confidence            5444332111 11112122  244 677888899999998764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.59  E-value=3.2e-05  Score=63.23  Aligned_cols=197  Identities=11%  Similarity=0.063  Sum_probs=122.3

Q ss_pred             eeEEEecCCCCCcEEEEecC-CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEE
Q 018697          123 INCVLWWSSGRHDKLVSIDE-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWD  196 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd  196 (351)
                      ...++.+|.....++.+-.- ....+||..++.....+.... ..|  ..-.-.|++||++|++.-+     .|.|-|||
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            34577888666545555444 456789998766554433221 111  2224579999999998753     58999999


Q ss_pred             cc-cCCcCceeecce--eEEEEcCCCCCcEEEEecC------------------CCeEEEEecccCCcceeE--e--eCC
Q 018697          197 LR-SMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD------------------ESGIHLWDLRMLKAPIQE--L--PGH  251 (351)
Q Consensus       197 ~~-~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~--~--~~~  251 (351)
                      .. +-+.+..+....  ...+.+.|+++ .|+++..                  +.++...|.++ ++.+.+  +  .-|
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLH  161 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCcccc
Confidence            99 444555555322  78888999997 3444421                  12355556555 444544  3  237


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCC-------eEEEEEcCCCCCCCCCCcccccCCcccccccceee-------ccccceE
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDS-------TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-------SDYEDSV  317 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v  317 (351)
                      ...|..+++.++| ..++..-..|       .|-+++...                     .+..+       ..-...+
T Consensus       162 ~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~---------------------~~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  162 QLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG---------------------ALRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             ccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC---------------------cceeccCChHHHHhhCCce
Confidence            7789999999988 5555443333       122332221                     11111       1223568


Q ss_pred             EEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          318 YGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      -+|++++++..+.+|+-..+.+.+||..+
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            89999999985556766889999998764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.59  E-value=6.7e-06  Score=71.80  Aligned_cols=201  Identities=13%  Similarity=0.121  Sum_probs=113.7

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +....+.++..+++.-++.....-.++++++..........    ..+.-...+|+|||+.|+.+.   ..|+...||-+
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~~l~f~~---~rdg~~~iy~~  267 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGSKLAFSS---SRDGSPDIYLM  267 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCCEEEEEE---CCCCCccEEEE
Confidence            33455677777777665544443457777777655443322    334445678999999988874   66676555544


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (351)
                      ..        ..+....+....+.-..-.|+|+|+++++++...|.-.||-.+..............    .-..-.|+|
T Consensus       268 dl--------~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~Sp  335 (425)
T COG0823         268 DL--------DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSP  335 (425)
T ss_pred             cC--------CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC----CCcCccCCC
Confidence            42        112233343333333466899999997777766665454444322222222221111    111568999


Q ss_pred             CCCcEEEeec-CCe--EEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          179 HDVNAVAATC-ESS--VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       179 ~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      +|++++..+. +|.  |.+.|+.++.....+.... ...-.|.|+++.++...+.-+.=.++.+
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~  399 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLV  399 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence            9999888764 344  6667776665433333222 6677888888855544444333333333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.59  E-value=0.00012  Score=59.01  Aligned_cols=203  Identities=12%  Similarity=0.168  Sum_probs=115.3

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~  137 (351)
                      +.+.+-...+..|+|.|+...|+++.   ...+.|...+..          ++.++.+.-. .+..-.|++..++.  ++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~---d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~~--~v   79 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQ---DEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNGR--YV   79 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEE---TTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STTE--EE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEE---CCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCCE--EE
Confidence            34455666799999999988888884   667777666643          4555555433 35677888987776  44


Q ss_pred             EE-ecCCcEEEEEcCCCCCCccc------ccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc---CCcCceee
Q 018697          138 VS-IDEENIFLWSLDCSNKNAQV------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIE  207 (351)
Q Consensus       138 ~~-~~d~~v~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~  207 (351)
                      .+ -.++.+.++++.........      .......+...+.+++|+|.++.|+++-...-..+|.++.   ........
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            44 45789999998543222111      1111122345689999999989898888777777777664   21111111


Q ss_pred             c-------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC---------CceeEEEecCCCCCeE
Q 018697          208 H-------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFI  268 (351)
Q Consensus       208 ~-------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l  268 (351)
                      .       ..   +..++++|...++++....+..|..+|..  ++++..+.-..         ...-.|+|.++| .+.
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LY  236 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLY  236 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT---EE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEE
Confidence            0       01   88999999988788889999999999954  66665554222         246789999998 555


Q ss_pred             EEeeCCCeEEEE
Q 018697          269 LSAGTDSTVNLW  280 (351)
Q Consensus       269 ~s~~~dg~i~iw  280 (351)
                      +++ .-+..++|
T Consensus       237 Ivs-EpNlfy~f  247 (248)
T PF06977_consen  237 IVS-EPNLFYRF  247 (248)
T ss_dssp             EEE-TTTEEEEE
T ss_pred             EEc-CCceEEEe
Confidence            443 44444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=8.7e-06  Score=72.70  Aligned_cols=106  Identities=13%  Similarity=0.031  Sum_probs=79.8

Q ss_pred             EECCCCCcEEEeecCCeEEEEEccc-----CCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRS-----MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----  243 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----  243 (351)
                      ++.++|++...  .++.|.+.|.++     .+....+..+. +..++++|||+++++++..+.++.|+|+.+...     
T Consensus       283 a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        283 EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            34557776665  367899999998     35556666666 999999999998888888899999999987432     


Q ss_pred             ------ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          244 ------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       244 ------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                            .+.+.+. ...-...+|.++| ....|..-|..|..||+..
T Consensus       361 ~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence                  1222222 2334567899999 8888889999999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=5e-06  Score=74.67  Aligned_cols=181  Identities=12%  Similarity=0.082  Sum_probs=123.6

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                      ..+.|++++.  . .++.+..+|.|++++....  ....+.     |...      ..+|.++++++.||+|.|-.+-+.
T Consensus        40 D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~--~~~~~~-----~s~~------~~~Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   40 DAISCCAVHD--K-FFALGTHRGAVYLTTCQGN--PKTNFD-----HSSS------ILEGEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             hHHHHHHhhc--c-eeeeccccceEEEEecCCc--cccccc-----cccc------ccCCceEEEecCCCcEEEeeccCC
Confidence            4455665543  2 3667778899999998732  122221     1111      557999999999999999999988


Q ss_pred             CcCceeecce-eEEEEcCCC-----CCcEEEEecCCCeEEEEecccCCccee-EeeCCCCceeEEEecCCCCCeEEEeeC
Q 018697          201 GKTNSIEHAH-VRNVDYDTK-----KKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      +...++.... +.+++++|+     .+ .+++|+.-| +.++.-+-.+.... .+..-.++|.++.|.-   .++|-++.
T Consensus       104 ~~~~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand  178 (846)
T KOG2066|consen  104 DEITQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWAND  178 (846)
T ss_pred             ccceeEecCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecC
Confidence            8777776555 999999998     23 588899888 88887664443222 3455678999999974   78888887


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc------eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED------SVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +| |++||+..                   .+.+..++....      -...+.|.++.+  |+.|- .-+|+|..++
T Consensus       179 ~G-v~vyd~~~-------------------~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  179 DG-VKVYDTPT-------------------RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIK  233 (846)
T ss_pred             CC-cEEEeccc-------------------cceeeccCCCCCCCCcccCCCceEecCCCe--EEEec-CCeEEEEEEe
Confidence            77 89999987                   333333322111      123578888754  55554 4478888776

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.53  E-value=7.2e-05  Score=65.70  Aligned_cols=228  Identities=13%  Similarity=0.120  Sum_probs=117.1

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +.+-...-....+.++|+++.+++.     .||...|+...         ..+...     .+.-....|.+.++  +++
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~---------~~r~k~-----~G~g~~~vw~~~n~--yAv   84 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTAL---------AWRNKA-----FGSGLSFVWSSRNR--YAV   84 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETT---------TTEEEE-----EEE-SEEEE-TSSE--EEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEcc---------CCcccc-----cCceeEEEEecCcc--EEE
Confidence            4444455668899999999888874     67788888744         233322     23455688999666  444


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCC
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT  218 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~  218 (351)
                      -....+|.|+.--+......+....      .+..+-.   |..|+..+ ++.|.+||..+++.+..+....|..+.|++
T Consensus        85 ~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~  154 (443)
T PF04053_consen   85 LESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSD  154 (443)
T ss_dssp             E-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-T
T ss_pred             EECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEEC
Confidence            4447889996322222211222111      2333322   66666555 558999999999999888854489999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccC----------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRML----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      ++. +++..+.+ .+.+++....          ...+..+..-...|.+..|..+  -++.|...  .|+.+--..    
T Consensus       155 ~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~~Ge----  224 (443)
T PF04053_consen  155 DGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKYLVNGE----  224 (443)
T ss_dssp             TSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEETTE----
T ss_pred             CCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEEcCC----
Confidence            998 55555543 6777765531          0023333332567888889865  45554443  676622111    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                     ...+..+   ..++.=+...|... .+.....|+.|..+.++.
T Consensus       225 ---------------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  225 ---------------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ---------------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred             ---------------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence                           2223333   34566666777555 677777888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.52  E-value=1.8e-05  Score=74.40  Aligned_cols=199  Identities=14%  Similarity=0.187  Sum_probs=125.5

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc--
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL--  197 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--  197 (351)
                      .+.|.++.|..+... ++.+..+|.|.+-|..+..  ......    ....|.+++|+||++.++..+...++.+.+-  
T Consensus        68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~--~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLE--LEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CcceEEEEEecccce-EEEEecCCcEEEEcccccc--eeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            468999999999886 5555567888888877532  111111    1237999999999999999888888766432  


Q ss_pred             --ccCCcC-------------------ceee--c---------------------ceeEEEEcCCCCCcEEEEec----C
Q 018697          198 --RSMGKT-------------------NSIE--H---------------------AHVRNVDYDTKKKHLLVTAA----D  229 (351)
Q Consensus       198 --~~~~~~-------------------~~~~--~---------------------~~v~~~~~~~~~~~~l~~~~----~  229 (351)
                        -..+++                   ..+.  .                     .|=.++.|--||+ ++++..    .
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~  219 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESET  219 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccC
Confidence              111111                   0111  0                     0023589999998 566522    3


Q ss_pred             C-CeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          230 E-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       230 d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      + ..|++||.+  +. +... ....+--.+++|-|.| .++++-.   .|+.|.+|..+-...                +
T Consensus       220 ~~RkirV~drE--g~-Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h----------------g  279 (1265)
T KOG1920|consen  220 GTRKIRVYDRE--GA-LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH----------------G  279 (1265)
T ss_pred             CceeEEEeccc--ch-hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----------------c
Confidence            3 799999976  22 2221 1222334678999999 8887754   356788887764111                2


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEE---eeeCCeEEEeecCcc
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVVVESVKPF  347 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~v~vw~~~~~  347 (351)
                      .....+......|..++|+.++. +||.   ......|++|-+..+
T Consensus       280 ~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  280 EFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            22323333344589999999988 7877   445556999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.51  E-value=2.5e-06  Score=77.57  Aligned_cols=184  Identities=13%  Similarity=0.122  Sum_probs=126.6

Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEE
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN  213 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~  213 (351)
                      .++.++-...+..+|+++...........     ..+.-+.  .+++.+++|...|+|.+-|+++.+.+.++. .| -.-
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-----~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si  220 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSA-----SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI  220 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccC-----CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence            36666666778888988654333222111     1233333  357889999999999999999999999988 66 333


Q ss_pred             EEcCCCCCcEEEEecC---------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          214 VDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+|+-.|. +|++++.         |.-|+|||+|.. +.+.-+.-+-++ .-+.|+|.-...++.++..|...+-|...
T Consensus       221 SDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  221 SDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeeeccCC-eEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence            34455676 7777764         455899999973 344444444443 56788998878899999999999998543


Q ss_pred             CCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .+..               ..-+..+......+.++++++++. .+|-+..+|.|.+|.-.
T Consensus       298 lsNP---------------~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  298 LSNP---------------PAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             cCCC---------------ccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCC
Confidence            1100               122233334445599999999999 89999999999999843

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.49  E-value=5.4e-06  Score=75.51  Aligned_cols=176  Identities=11%  Similarity=0.119  Sum_probs=123.5

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      ||-...+..+|+.         ..+..+........|.-++.  +++ .++++...|+|.+-|+++.+....+     ..
T Consensus       153 Gg~Q~~li~~Dl~---------~~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~-----~a  215 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLN---------TEKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTF-----DA  215 (1118)
T ss_pred             cchhhheeeeecc---------cceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeee-----ec
Confidence            3555567777776         44444444333434554443  344 3667777899999999864433332     34


Q ss_pred             cccceeeeEECCCCCcEEEeec---------CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          167 MLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                      |+..+.++..  .|+.|++++.         |..|+|||+|..+.+..+.... ..-+.|+|.-...+++.+..|...+-
T Consensus       216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence            6667776554  5788888763         5678999999887777666433 66778888877688999999999999


Q ss_pred             ecccCCcc---eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018697          237 DLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV  282 (351)
Q Consensus       237 d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  282 (351)
                      |......+   +..+......+..+.+++.+ ..++.|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence            94433333   33344445669999999999 99999999999999973

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.7e-06  Score=69.91  Aligned_cols=225  Identities=11%  Similarity=0.062  Sum_probs=143.0

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee--e
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL--D  117 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~  117 (351)
                      .++.+..|.-.+..+--....+..|-..|.+++.+-++..+.+.   +..|..++++|++         ....+..+  .
T Consensus        28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv---~d~Dhs~KvfDvE---------n~DminmiKL~   95 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV---EDPDHSVKVFDVE---------NFDMINMIKLV   95 (558)
T ss_pred             cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec---cCcccceeEEEee---------ccchhhhcccc
Confidence            34555445444433333446677888999999999888666664   2348999999998         33333222  2


Q ss_pred             ccccceeEEEecCCC-CCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEE
Q 018697          118 AHVGKINCVLWWSSG-RHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~-~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  195 (351)
                      .-.+.+.++ .++.. ..+++++ ..++.+.++|-...........   .-|..+|..+.+++-+..+++....|.|.-|
T Consensus        96 ~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW  171 (558)
T KOG0882|consen   96 DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQAGDSAVSIDISGMVEYW  171 (558)
T ss_pred             cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeeccccceeeccccceeEee
Confidence            222333222 22322 2224444 5689999999875443333322   2366799999999999999998889999999


Q ss_pred             Eccc------CCcCceee---------cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------
Q 018697          196 DLRS------MGKTNSIE---------HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------  249 (351)
Q Consensus       196 d~~~------~~~~~~~~---------~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------  249 (351)
                      ..+.      .+....++         ...  ..++.|+|++. .+.+-+.|..|++++.++ ++.++.+.         
T Consensus       172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~Kt-GklvqeiDE~~t~~~~q  249 (558)
T KOG0882|consen  172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKT-GKLVQEIDEVLTDAQYQ  249 (558)
T ss_pred             cCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEecc-chhhhhhhccchhhhhc
Confidence            9873      11111111         111  88999999998 688888999999999986 43332221         


Q ss_pred             -----------------------CCCC-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          250 -----------------------GHTH-WTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       250 -----------------------~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                                             -|.. .-+.+.|...+ ++|+-++-=| |++.++.+
T Consensus       250 ~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  250 PKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             cccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeec
Confidence                                   1221 22456788888 8888777655 78888776

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.3e-06  Score=72.18  Aligned_cols=116  Identities=15%  Similarity=0.214  Sum_probs=87.1

Q ss_pred             CcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          166 GMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      ++...|.+++|+|..+ .+..++.+.+|+|.|+++...+..+.... +.+++|.-+..+.++.|..+|.|.+||+|.+..
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            4556899999999887 56678899999999999988877777444 999999999998999999999999999998776


Q ss_pred             ceeEeeC--CCCceeEEEe------cCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          244 PIQELPG--HTHWTWAVCC------NPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       244 ~~~~~~~--~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++..+.+  ...+|..++.      .+.| .+|+....+  +..|++..
T Consensus       271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  271 PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVF  316 (463)
T ss_pred             hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhc
Confidence            6665543  2344544433      2334 455555544  56777654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=1.7e-05  Score=69.16  Aligned_cols=122  Identities=14%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             CCcceeeeeeCCCC-CceEEEEeecCCcce----EEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcEE
Q 018697           64 HPNEIWDLSSCPFD-QRIFSTVFSTGESYG----AAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        64 h~~~v~~i~~~~~~-~~l~~~~~~~~~d~~----i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      -+....++.|+-.. ..+.++-.+-+.++.    -.+|++..       ...+.+... -.....|.|++++|+... ++
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-------~klqrvsvtsipL~s~v~~ca~sp~E~k-Lv  275 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-------NKLQRVSVTSIPLPSQVICCARSPSEDK-LV  275 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-------CceeEEEEEEEecCCcceEEecCcccce-EE
Confidence            34555677887643 344454333334443    34566651       122322222 246778999999999986 88


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                      .|+.||+|.+||...+..  .....     .-..+.++|+|+|..+++++..|.+.+||+.-.
T Consensus       276 lGC~DgSiiLyD~~~~~t--~~~ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  276 LGCEDGSIILYDTTRGVT--LLAKA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEecCCeEEEEEcCCCee--eeeee-----cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            889999999999985321  11111     125788999999999999999999999998644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.43  E-value=4.8e-05  Score=70.57  Aligned_cols=142  Identities=13%  Similarity=0.113  Sum_probs=91.2

Q ss_pred             CCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC-------CCcEEEeecCCeEEEEEcccCC--
Q 018697          132 GRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-------DVNAVAATCESSVQFWDLRSMG--  201 (351)
Q Consensus       132 ~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~iwd~~~~~--  201 (351)
                      .+.+++.. .....|+-.|++.++-...-....    ..+|..+  .|+       ....+.|-.++.+..||+|-..  
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k  565 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD----DIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK  565 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCC----CcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence            34344444 445778888888654333222211    1123333  332       2346777788999999999643  


Q ss_pred             cCc----eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCe
Q 018697          202 KTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST  276 (351)
Q Consensus       202 ~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  276 (351)
                      .+.    .+.... ..|++-..+|  .||+|+.+|.||+||-- ..+....+.+-..+|..|..+.|| +++++.+ +..
T Consensus       566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~ty  640 (794)
T PF08553_consen  566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADG-KWILATC-KTY  640 (794)
T ss_pred             eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cce
Confidence            111    111111 8899999998  58899999999999943 244455566778999999999999 6666544 456


Q ss_pred             EEEEEcCC
Q 018697          277 VNLWLVST  284 (351)
Q Consensus       277 i~iwd~~~  284 (351)
                      |.+++...
T Consensus       641 LlLi~t~~  648 (794)
T PF08553_consen  641 LLLIDTLI  648 (794)
T ss_pred             EEEEEEee
Confidence            88888753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.41  E-value=0.00014  Score=59.05  Aligned_cols=183  Identities=9%  Similarity=0.031  Sum_probs=105.9

Q ss_pred             CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018697           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (351)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  155 (351)
                      ++..++++    +.++.+..||..         +++.+-.... ..++.......++.  +++...++.++.+|..+++.
T Consensus        35 ~~~~v~~~----~~~~~l~~~d~~---------tG~~~W~~~~-~~~~~~~~~~~~~~--v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   35 DGGRVYVA----SGDGNLYALDAK---------TGKVLWRFDL-PGPISGAPVVDGGR--VYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             ETTEEEEE----ETTSEEEEEETT---------TSEEEEEEEC-SSCGGSGEEEETTE--EEEEETTSEEEEEETTTSCE
T ss_pred             eCCEEEEE----cCCCEEEEEECC---------CCCEEEEeec-cccccceeeecccc--cccccceeeeEecccCCcce
Confidence            45666664    478899999987         5565555543 22221112223333  55555678999999888776


Q ss_pred             CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------e-------EEEEcCCCCCc
Q 018697          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V-------RNVDYDTKKKH  222 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v-------~~~~~~~~~~~  222 (351)
                      ............. ..........+..++++..++.|..+|+++|+.+.......      +       ..+.+. ++  
T Consensus        99 ~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  174 (238)
T PF13360_consen   99 LWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--  174 (238)
T ss_dssp             EEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--
T ss_pred             eeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--
Confidence            6553221111100 11112222236778888889999999999998766654321      1       233333 34  


Q ss_pred             EEEEecCCCe-EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          223 LLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       223 ~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .++.+..++. +.+ |+.+ ++.+....  ...+..+ ....+ ..|+.++.++.|..||.++
T Consensus       175 ~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  175 RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTT
T ss_pred             EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCC
Confidence            3555666664 555 9887 44333222  2233332 34555 6677777999999999998

...

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.36  E-value=0.0011  Score=58.71  Aligned_cols=246  Identities=13%  Similarity=0.072  Sum_probs=129.5

Q ss_pred             eeeeeeCCCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec-----
Q 018697           68 IWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID-----  141 (351)
Q Consensus        68 v~~i~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----  141 (351)
                      +...+++|++++++.+...+|.| ..++++|+.         +++.+...- ....-..+.|.++++.++.+...     
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~  195 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------TGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRT  195 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT---------TTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECC---------CCcCcCCcc-cccccceEEEeCCCCEEEEEEeCccccc
Confidence            34678899999988776444444 579999998         444443211 11122239999999864455422     


Q ss_pred             -----CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---C-CeEEEEEcccC----CcCceeec
Q 018697          142 -----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---E-SSVQFWDLRSM----GKTNSIEH  208 (351)
Q Consensus       142 -----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~iwd~~~~----~~~~~~~~  208 (351)
                           ...|+.|.+.+......++...... ......+..++++++++....   + ..+.+.|+..+    .....+..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~-~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDE-PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTC-TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             ccCCCCcEEEEEECCCChHhCeeEEeecCC-CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                 2247888887654332233222111 112567889999999886542   3 46788888764    12222221


Q ss_pred             ce---eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCc--ceeEeeCCCC--ceeEEEecCCCCCeEEEeeCCC--e
Q 018697          209 AH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS--T  276 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg--~  276 (351)
                      ..   ...+... .+. +++...   .++.|...++.....  ....+..+..  .+..+..  .+..+++....++  .
T Consensus       275 ~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~  350 (414)
T PF02897_consen  275 REDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSR  350 (414)
T ss_dssp             SSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred             CCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence            11   2333333 444 444332   346777778776442  1224445555  3444444  3425566666565  5


Q ss_pred             EEEEEcC-CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee---CCeEEEeecCcc
Q 018697          277 VNLWLVS-TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY---DGRVVVESVKPF  347 (351)
Q Consensus       277 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~~  347 (351)
                      |+++++. .                   .........-.+.|..+...+++..+.++.+.   -+++..||+.+.
T Consensus       351 l~v~~~~~~-------------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  351 LRVYDLDDG-------------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEETT-T-------------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEECCCC-------------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            7788887 3                   22222222223446666666666655555442   346777777653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.35  E-value=0.00094  Score=58.77  Aligned_cols=180  Identities=12%  Similarity=0.033  Sum_probs=104.5

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccC-c-ccceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeeccee
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-M-LHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV  211 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v  211 (351)
                      ++.+..++.+..+|..+++...........+ + ......+.-+|  .+..+++++.++.+..+|+.+++.+........
T Consensus       208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~  287 (394)
T PRK11138        208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV  287 (394)
T ss_pred             EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc
Confidence            5566668889888988776544332111000 0 00011111112  245677788899999999999987665543222


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  290 (351)
                      ..+..  .+. .++.++.+|.+..+|..+ ++.+-....-. ....+....  + ..++.++.||.|.+.|..+      
T Consensus       288 ~~~~~--~~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~t------  354 (394)
T PRK11138        288 NDFAV--DGG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINRED------  354 (394)
T ss_pred             cCcEE--ECC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCC------
Confidence            22222  233 566678899999999986 44333222111 111222222  3 5778889999999999988      


Q ss_pred             CCcccccCCcccccccceeeccccceEEE-EEeCCCCCceEEEeeeCCeEEEeec
Q 018697          291 PSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                                   ++.+...+-....+.+ ...  .+. .|+.++.||.|+.++.
T Consensus       355 -------------G~~~~~~~~~~~~~~s~P~~--~~~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        355 -------------GRFVAQQKVDSSGFLSEPVV--ADD-KLLIQARDGTVYAITR  393 (394)
T ss_pred             -------------CCEEEEEEcCCCcceeCCEE--ECC-EEEEEeCCceEEEEeC
Confidence                         7776665433222322 222  233 5777888999988875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.33  E-value=0.00055  Score=55.20  Aligned_cols=200  Identities=11%  Similarity=0.081  Sum_probs=108.7

Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+.+-...+..++|+|+...++++....+.|..++.+ ++....+.. .  + .....++++..++.++++.-.++.+.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~--g-~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-D--G-FGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--S--S--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-C--C-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            3445556799999999988655555667888777764 332222211 1  1 236778888877766666556899999


Q ss_pred             EEcccCCcC------ceee--cc--e---eEEEEcCCCCCcEEEEecCCCeEEEEeccc--CCcceeEe--------eCC
Q 018697          195 WDLRSMGKT------NSIE--HA--H---VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQEL--------PGH  251 (351)
Q Consensus       195 wd~~~~~~~------~~~~--~~--~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~--------~~~  251 (351)
                      +++......      ..+.  ..  +   +..++|+|.+.. |+.+-+..-..+|.++.  ....+...        ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            988443211      1111  11  1   889999998874 44566666667777653  11111111        123


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec--c--c-----cceEEEEEe
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--D--Y-----EDSVYGLAW  322 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-----~~~v~~~~~  322 (351)
                      ...+.+++++|....+++....+..|..+|..                    ++.+..+.  .  |     -...-+|+|
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--------------------G~~~~~~~L~~g~~gl~~~~~QpEGIa~  229 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--------------------GRVVSSLSLDRGFHGLSKDIPQPEGIAF  229 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT----------------------EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCC--------------------CCEEEEEEeCCcccCcccccCCccEEEE
Confidence            35578999999876788888888899999954                    44443332  1  1     123578999


Q ss_pred             CCCCCceEEEeeeCCeEEEe
Q 018697          323 SSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw  342 (351)
                      .++|.  |...+.-+..+++
T Consensus       230 d~~G~--LYIvsEpNlfy~f  247 (248)
T PF06977_consen  230 DPDGN--LYIVSEPNLFYRF  247 (248)
T ss_dssp             -TT----EEEEETTTEEEEE
T ss_pred             CCCCC--EEEEcCCceEEEe
Confidence            99987  3344556655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00074  Score=58.89  Aligned_cols=198  Identities=15%  Similarity=0.099  Sum_probs=130.9

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEEcc
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLR  198 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~  198 (351)
                      .-..++.++.+...++....++.|.+.|..............      ....++++|+++.+.++..   ++.+.+.|..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~  148 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA  148 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence            345778889998756666667999999966433332222211      5678899999988887754   6899999988


Q ss_pred             cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE-----eeCCCCceeEEEecCCCCCeEEEee
Q 018697          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-----LPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +.+.......+. ...++++|++..++++-..++.|.++|... .. +..     ...-...-..+.++|+|....++..
T Consensus       149 t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         149 TNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             CCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC-cc-eeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            888777765544 788999999996666666889999999765 22 221     0112233467889999943444444


Q ss_pred             CC--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc-eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          273 TD--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       273 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+  +.+...|...                   .........-.. ....+..+|+|....+.-...+.+.+-|...
T Consensus       227 ~~~~~~v~~id~~~-------------------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         227 GSGSNNVLKIDTAT-------------------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             cCCCceEEEEeCCC-------------------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            43  5888888877                   444433111111 3566888999884444434556777766554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00032  Score=64.03  Aligned_cols=214  Identities=10%  Similarity=0.099  Sum_probs=121.4

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcc-eeeeeeCCCCCceEEEEeecCCcc-eEEEEEcccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-IWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPEL  101 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~  101 (351)
                      +++.+.++++|+.    ++.|  +.+...  ......+..++.. |..+-.-.+...|++.+.+...+. .++||+++..
T Consensus        31 ~~s~~~~vvigt~----~G~V--~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   31 CSSSTGSVVIGTA----DGRV--VILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             EcCCCceEEEeec----cccE--EEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            5667788888863    3444  444332  1222556666666 444433333345666542222122 6999999843


Q ss_pred             cCCCCCCcceee--eeeec-----cccceeEEEecCCCCCcEEEEecCCcEEEEEcCC--CCCCcccccccccCccccee
Q 018697          102 YGQLNSPQLERI--AALDA-----HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC--SNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus       102 ~~~~~~~~~~~~--~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~  172 (351)
                      .+.  . ...++  ..+..     ...++.+++.+.+-+ .++.|-.+|.|..+.=+-  ..........   .-..+|+
T Consensus       103 ~~n--~-sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~---~~~~pIT  175 (933)
T KOG2114|consen  103 DKN--N-SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSH---RGKEPIT  175 (933)
T ss_pred             CCC--C-CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeec---cCCCCce
Confidence            211  1 12333  12222     245788899988866 366666789998885331  1111111111   1245899


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      ++.+..++..++.+..-..|.+|.+....+.......+   ++|..+++....++++++  ..+.+||... ..+...+.
T Consensus       176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~-~~~cfaf~  252 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDG-RGPCFAFE  252 (933)
T ss_pred             eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCCC-cceeeeec
Confidence            99999888874444455679999998544233322233   888899876653444333  4799999885 44566666


Q ss_pred             -CCCCce
Q 018697          250 -GHTHWT  255 (351)
Q Consensus       250 -~~~~~v  255 (351)
                       +|....
T Consensus       253 ~g~kk~~  259 (933)
T KOG2114|consen  253 VGEKKEM  259 (933)
T ss_pred             CCCeEEE
Confidence             555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=5.4e-05  Score=68.84  Aligned_cols=288  Identities=11%  Similarity=0.017  Sum_probs=156.4

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      .+++|....|++++++....+.+.++.=..+.     .+-...+-.+.+++|+|..-.|+.    |=.-|.+.+|...  
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-----qr~Vt~P~hatSLCWHpe~~vLa~----gwe~g~~~v~~~~--   89 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEP-----QRDVTYPVHATSLCWHPEEFVLAQ----GWEMGVSDVQKTN--   89 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCC-----CcccccceehhhhccChHHHHHhh----ccccceeEEEecC--
Confidence            45889999999999887777887766543331     111123345567999997655555    3467889999976  


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeeeEECCC
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~  179 (351)
                             ..+.-.....|..+|..+.||++|.. ++++..-|.|.+|...-.++..  .++......+ -...+...+++
T Consensus        90 -------~~e~htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~-ltl~cfRL~~~  160 (1416)
T KOG3617|consen   90 -------TTETHTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ-LTLWCFRLSYD  160 (1416)
T ss_pred             -------CceeeeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhce-eeEEEEecCCC
Confidence                   33444445679999999999999994 5555667999999887332222  2222222221 13344455665


Q ss_pred             CCc------EEEeecCCeEE-EEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018697          180 DVN------AVAATCESSVQ-FWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       180 ~~~------l~~~~~d~~i~-iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      +.-      .++++.+..+- .++.+..........      .=.|+|. .++.++.+|+|+-.|-.  ++.....+. .
T Consensus       161 ~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k------sgv~~g~-~F~~~~~~GtVyyvdq~--g~~~~V~k~-d  230 (1416)
T KOG3617|consen  161 REEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK------SGVPKGT-EFLFAGKSGTVYYVDQN--GRQRTVHKL-D  230 (1416)
T ss_pred             hHHhhhhhhhhccCchhhhcccccCccchhhccccc------cCCCCCc-EEEEEcCCceEEEEcCC--CcEEEEEEc-c
Confidence            321      23333333332 222221111111110      1236776 67778899999888855  333333321 1


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC--------cccccC--Cccccc----ccceeeccccceEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS--------ESLVES--PNQRAN----SLLNSYSDYEDSVY  318 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~--~~~~~~----~~~~~~~~~~~~v~  318 (351)
                      +. ..+-|.+.- .-+..-..+-++.++-....+..+...        +...+.  .....+    ..-..+ .....++
T Consensus       231 S~-vQmLf~~~~-eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~  307 (1416)
T KOG3617|consen  231 SE-VQMLFMGYC-EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGIL  307 (1416)
T ss_pred             ch-HHHHHhccc-ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceE
Confidence            11 234455544 444444444444444333211100000        000000  000001    000111 1234689


Q ss_pred             EEEeCCCCCceEEEeeeCCeEEEee
Q 018697          319 GLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      +++++..+. .++.|...|.+.+|.
T Consensus       308 c~cY~~~~~-~l~agt~~gnv~~w~  331 (1416)
T KOG3617|consen  308 CMCYGEKEI-RLWAGTKEGNVTIWL  331 (1416)
T ss_pred             EEEEeccce-EEEecccCCcEEEee
Confidence            999999887 799999999999996

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.00025  Score=61.24  Aligned_cols=232  Identities=16%  Similarity=0.189  Sum_probs=121.2

Q ss_pred             CCCCCceEEEEee-----cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           74 CPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        74 ~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      |||+++++.....     -+..+.+.|||+.         +.+ ...+......+....|+|+|+.  ++-..++.|.++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~---------~~~-~~~l~~~~~~~~~~~~sP~g~~--~~~v~~~nly~~   68 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE---------TGE-ITPLTPPPPKLQDAKWSPDGKY--IAFVRDNNLYLR   68 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETT---------TTE-EEESS-EETTBSEEEE-SSSTE--EEEEETTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecC---------CCc-eEECcCCccccccceeecCCCe--eEEEecCceEEE
Confidence            5777776664211     1123468889987         322 2233233667889999999994  444457899999


Q ss_pred             EcCCCCCCccccccc---ccCc---------ccceeeeEECCCCCcEEEeec-CCe------------------------
Q 018697          149 SLDCSNKNAQVQSKQ---SSGM---------LHYLSGGAWDPHDVNAVAATC-ESS------------------------  191 (351)
Q Consensus       149 d~~~~~~~~~~~~~~---~~~~---------~~~v~~~~~~~~~~~l~~~~~-d~~------------------------  191 (351)
                      ++.++..........   ..|.         ...-.++-|+||+++|+.... +..                        
T Consensus        69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y  148 (353)
T PF00930_consen   69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY  148 (353)
T ss_dssp             SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE-
T ss_pred             ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc
Confidence            887652221111110   0000         113467889999998877642 221                        


Q ss_pred             -----------EEEEEcccCCcCc-eee-----cce-eEEEEcCCCCCcEEE-EecCC---CeEEEEecccCCcceeEee
Q 018697          192 -----------VQFWDLRSMGKTN-SIE-----HAH-VRNVDYDTKKKHLLV-TAADE---SGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       192 -----------i~iwd~~~~~~~~-~~~-----~~~-v~~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~~~~~~~  249 (351)
                                 +.++|+.+++... ...     ..+ +..+.|.+++..+++ ....+   -.+.++|..+....+....
T Consensus       149 Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e  228 (353)
T PF00930_consen  149 PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE  228 (353)
T ss_dssp             -BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred             CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence                       3356665554321 111     112 889999999872333 22322   2466777765222222222


Q ss_pred             CCCCce---eEEEec-CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE-EEeCC
Q 018697          250 GHTHWT---WAVCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSS  324 (351)
Q Consensus       250 ~~~~~v---~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~  324 (351)
                      ....+|   ....|. +++..++.....||.-+|+-+...                  +.....+....-.|.. +.|++
T Consensus       229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~------------------~~~~~~lT~G~~~V~~i~~~d~  290 (353)
T PF00930_consen  229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD------------------GGKPRQLTSGDWEVTSILGWDE  290 (353)
T ss_dssp             ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT------------------SSEEEESS-SSS-EEEEEEEEC
T ss_pred             cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc------------------ccceeccccCceeecccceEcC
Confidence            233333   345554 676577777778886666655441                  2223344444445644 67788


Q ss_pred             CCCceEEEeee
Q 018697          325 REPWIFASLSY  335 (351)
Q Consensus       325 ~~~~~l~s~~~  335 (351)
                      ++..++.++..
T Consensus       291 ~~~~iyf~a~~  301 (353)
T PF00930_consen  291 DNNRIYFTANG  301 (353)
T ss_dssp             TSSEEEEEESS
T ss_pred             CCCEEEEEecC
Confidence            87756666665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.27  E-value=2.3e-05  Score=72.64  Aligned_cols=134  Identities=10%  Similarity=0.133  Sum_probs=94.6

Q ss_pred             cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCC------cEEEEecCCCeEEEEecccCCcceeEee----CCCCcee
Q 018697          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK------HLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTW  256 (351)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~  256 (351)
                      ....|+-.|++.|+.+....... +.-..+.|+.+      .-.+.|-++..+..||.|..+..+..-.    ......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            56889999999999988887544 43444444321      1234588889999999997543322211    2334567


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      |++-+.+|  +||.|+.+|.||+||.-.                   ...-..+.+-..+|.+|+.+.||+|+||||  +
T Consensus       582 ~~aTt~~G--~iavgs~~G~IRLyd~~g-------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~  638 (794)
T PF08553_consen  582 CFATTEDG--YIAVGSNKGDIRLYDRLG-------------------KRAKTALPGLGDPIIGIDVTADGKWILATC--K  638 (794)
T ss_pred             EEEecCCc--eEEEEeCCCcEEeecccc-------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--c
Confidence            78777776  899999999999999543                   233334556678999999999999888777  4


Q ss_pred             CeEEEeec
Q 018697          337 GRVVVESV  344 (351)
Q Consensus       337 g~v~vw~~  344 (351)
                      ..|.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            57777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=8.2e-05  Score=67.21  Aligned_cols=173  Identities=12%  Similarity=0.110  Sum_probs=110.5

Q ss_pred             cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC
Q 018697           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS  107 (351)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~  107 (351)
                      .+.|+.|+    +.+.+++.+.....     ...+.|...      .-+|.+++++    +.||+|.|-.+-        
T Consensus        49 ~~~~~~Gt----H~g~v~~~~~~~~~-----~~~~~~s~~------~~~Gey~asC----S~DGkv~I~sl~--------  101 (846)
T KOG2066|consen   49 DKFFALGT----HRGAVYLTTCQGNP-----KTNFDHSSS------ILEGEYVASC----SDDGKVVIGSLF--------  101 (846)
T ss_pred             cceeeecc----ccceEEEEecCCcc-----ccccccccc------ccCCceEEEe----cCCCcEEEeecc--------
Confidence            34556665    45677776665532     222334333      4568888885    899999999887        


Q ss_pred             CcceeeeeeeccccceeEEEecCC----CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE
Q 018697          108 PQLERIAALDAHVGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (351)
Q Consensus       108 ~~~~~~~~~~~h~~~v~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (351)
                       +.+...++ ....++.+++++|+    ....+++++.-| +.++.-+=-+....+....   ..++|.++.|.  |+++
T Consensus       102 -~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~---~eG~I~~i~W~--g~lI  173 (846)
T KOG2066|consen  102 -TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE---GEGPIHSIKWR--GNLI  173 (846)
T ss_pred             -CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec---CccceEEEEec--CcEE
Confidence             34444444 34568999999998    122377777667 7777644222222222222   23489999996  5666


Q ss_pred             EEeecCCeEEEEEcccCCcCceeecce--------eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          184 VAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       184 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      +-++.+ .|++||+.+++.+..++.++        ...+.|.++.+  ++.|=. .+|+|..++
T Consensus       174 AWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWG-DSVKICSIK  233 (846)
T ss_pred             EEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEecC-CeEEEEEEe
Confidence            665544 59999999988776666443        66788988875  454544 378888887

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.26  E-value=0.0019  Score=54.90  Aligned_cols=281  Identities=15%  Similarity=0.218  Sum_probs=125.2

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      +..++.+|+.++. .....+++++++...  .+  .++.... .......++|+++.++...    ....|+--|+.   
T Consensus        43 ft~dG~kllF~s~-~dg~~nly~lDL~t~--~i--~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~---  110 (386)
T PF14583_consen   43 FTDDGRKLLFASD-FDGNRNLYLLDLATG--EI--TQLTDGPGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLD---  110 (386)
T ss_dssp             B-TTS-EEEEEE--TTSS-EEEEEETTT---EE--EE---SS-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETT---
T ss_pred             cCCCCCEEEEEec-cCCCcceEEEEcccC--EE--EECccCCCCCccceEEecCCCeEEEEE----CCCeEEEEECC---
Confidence            4567778888654 233455666666553  22  3333333 3344677788888877652    34577777777   


Q ss_pred             CCCCCCcceeeeeeeccccceeEEEecC--CCCCcEEEEec----CC-------------------cEEEEEcCCCCCCc
Q 018697          103 GQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLVSID----EE-------------------NIFLWSLDCSNKNA  157 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~----d~-------------------~v~iwd~~~~~~~~  157 (351)
                            +.+....+.....-+-...|..  ++.  .+++..    |.                   .|.--|+.+++...
T Consensus       111 ------T~e~~~vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  111 ------TLEERVVYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             ------T--EEEEEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred             ------cCcEEEEEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence                  4444445555556665566643  344  444311    11                   13333444332211


Q ss_pred             ccccccccCcccceeeeEECCCCCcEEEeecCC-----eEEEEEcccC-CcCcee---ecce-eEEEEcCCCCCcEEEEe
Q 018697          158 QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSM-GKTNSI---EHAH-VRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~-~~~~~~---~~~~-v~~~~~~~~~~~~l~~~  227 (351)
                      ....      ...+..+.|+|....+++-+..|     .-+||-+++. .....+   .... +..=-|.|+|..+.+.+
T Consensus       183 v~~~------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~  256 (386)
T PF14583_consen  183 VFED------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS  256 (386)
T ss_dssp             EEEE------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred             EEec------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence            1111      22567889999888888776443     2366766542 222222   1122 66677899998555533


Q ss_pred             c----CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC----------------eEEEEEcCCCCC
Q 018697          228 A----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----------------TVNLWLVSTSNH  287 (351)
Q Consensus       228 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----------------~i~iwd~~~~~~  287 (351)
                      .    .+..|.-+|+.+... . .+. ...+....--+++| .+++-=+.|.                .|+++++.....
T Consensus       257 ~~~~~~~~~i~~~d~~t~~~-~-~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~  332 (386)
T PF14583_consen  257 YTPGGQDFWIAGYDPDTGER-R-RLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF  332 (386)
T ss_dssp             EETTT--EEEEEE-TTT--E-E-EEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEE
T ss_pred             ecCCCCceEEEeeCCCCCCc-e-EEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence            3    344677778776332 2 121 12233445557888 6666444432                445566654100


Q ss_pred             CCCCCcccccCCcccccccceeeccccc-eEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          288 DELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ...    ...      ......+.++.. .=-...|+||++++|.+....|...||=+
T Consensus       333 ~~l----~~h------~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  333 RKL----ARH------DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEE----EE-------------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eee----eec------cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            000    000      000001111111 01347899999999999988888777644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=0.0012  Score=55.29  Aligned_cols=227  Identities=11%  Similarity=0.031  Sum_probs=126.1

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd  149 (351)
                      ...|.++...|+-+   .-..+.|.-|+..         .+ ....+. +.+.+.++..-..+.. ++++.  ..+.+++
T Consensus        29 gP~w~~~~~~L~w~---DI~~~~i~r~~~~---------~g-~~~~~~-~p~~~~~~~~~d~~g~-Lv~~~--~g~~~~~   91 (307)
T COG3386          29 GPVWDPDRGALLWV---DILGGRIHRLDPE---------TG-KKRVFP-SPGGFSSGALIDAGGR-LIACE--HGVRLLD   91 (307)
T ss_pred             CccCcCCCCEEEEE---eCCCCeEEEecCC---------cC-ceEEEE-CCCCcccceeecCCCe-EEEEc--cccEEEe
Confidence            34577777766554   3456677777765         11 222332 2333344444344431 44432  3466677


Q ss_pred             cCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----------CCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------ESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      .+.+..................+.+...|+|.+.+....           -|.|+.+|. .+.....+. .+   .+.++
T Consensus        92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla  169 (307)
T COG3386          92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA  169 (307)
T ss_pred             ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE
Confidence            654433222222221122246778889999887665433           133444443 343333333 33   78999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccC-C----c-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-eEEEEEcCCCCCC
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRML-K----A-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHD  288 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~-~----~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~  288 (351)
                      ||||++.++++=+..+.|+-|++... .    + ....+....+..-.++...+| .+.+++..+| .|..|+..     
T Consensus       170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-----  243 (307)
T COG3386         170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-----  243 (307)
T ss_pred             ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-----
Confidence            99999855665566688999987621 1    1 111222233555667777787 6665444444 88888887     


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeC-CCCCceEEEeeeC
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (351)
                                     ++++..+.-....+++++|- |+.+.++++....
T Consensus       244 ---------------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         244 ---------------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ---------------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence                           46666666554567888885 4455466665544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.21  E-value=0.0024  Score=56.22  Aligned_cols=168  Identities=10%  Similarity=0.021  Sum_probs=90.9

Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .|+||+..          ++.+.++.--.+.|.++.|+.+..  +++-..||.+++||+....   ....... -....|
T Consensus        62 ~I~iys~s----------G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v  125 (410)
T PF04841_consen   62 SIQIYSSS----------GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKV  125 (410)
T ss_pred             EEEEECCC----------CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce---eechhhh-ccccCc
Confidence            58888875          456666554458999999999766  5555789999999997322   1111100 000112


Q ss_pred             -----eeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeec-------ce----eE-EEEcCCCCCcEEEEecCCCeE
Q 018697          172 -----SGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-------AH----VR-NVDYDTKKKHLLVTAADESGI  233 (351)
Q Consensus       172 -----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-------~~----v~-~~~~~~~~~~~l~~~~~dg~i  233 (351)
                           ....+..+|  +++-..++.+.+..--... ....+..       .+    .. ...++.+.. ..+....++.+
T Consensus       126 ~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i  202 (410)
T PF04841_consen  126 LECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETI  202 (410)
T ss_pred             ccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEE
Confidence                 122222233  3333344444443222111 1111100       01    11 122334444 34444455566


Q ss_pred             EEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       234 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+.+-... +.   +. ..+++..++.||++ +++|.-..+|.+.+.....
T Consensus       203 ~~i~~~~~-~~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  203 YIIDENSF-KQ---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             EEEEcccc-cc---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcc
Confidence            65553321 11   22 24689999999999 9999999999998887655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.14  E-value=0.0032  Score=52.48  Aligned_cols=276  Identities=12%  Similarity=0.044  Sum_probs=138.5

Q ss_pred             cceEEEeeeeeC-CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEE--Eeec----CCcceEEEEEccc
Q 018697           28 HTSFLTGTLSLK-EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST--VFST----GESYGAAIWQIPE  100 (351)
Q Consensus        28 ~~~~~~g~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~--~~~~----~~d~~i~vw~~~~  100 (351)
                      .+|+++-..... -..++++++-+  .++++-..-.+.   ...+..+|+++.+.++  .++-    -....|.+||.. 
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD~d--~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-   75 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVIDAD--SGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-   75 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEETT--TTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-
T ss_pred             CcEEEEECCccccccceEEEEECC--CCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-
Confidence            356666543221 12456666544  344432222222   2346679999987754  2332    233469999988 


Q ss_pred             ccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697          101 LYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                              +..+...+.-...       ....++++.+++++++.- +--..|.|-|+...+-...+ ..  ++    ..
T Consensus        76 --------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~--PG----C~  140 (342)
T PF06433_consen   76 --------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DT--PG----CW  140 (342)
T ss_dssp             --------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EG--TS----EE
T ss_pred             --------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cC--CC----EE
Confidence                    4555444322211       123356788888654444 33567888888753322211 11  11    11


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcc-cCCcCceee----cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIE----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-  243 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  243 (351)
                      .+ +-...+.+.+-|.||.+.-..+. .|+......    ...   +..-++...+. .++--+.+|.|+-.|+..... 
T Consensus       141 ~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~  218 (342)
T PF06433_consen  141 LI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAK  218 (342)
T ss_dssp             EE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEE
T ss_pred             EE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCccc
Confidence            11 11112457788899999888887 444432111    000   22333333333 344467889999888875221 


Q ss_pred             ceeEeeCCC----------CceeEEEecCCCCCeEEEee--------CCC--eEEEEEcCCCCCCCCCCcccccCCcccc
Q 018697          244 PIQELPGHT----------HWTWAVCCNPEYDGFILSAG--------TDS--TVNLWLVSTSNHDELPSESLVESPNQRA  303 (351)
Q Consensus       244 ~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                      ....+..-.          +.-.-+++++.. ..|+..-        .|+  .|-++|+.+                   
T Consensus       219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t-------------------  278 (342)
T PF06433_consen  219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT-------------------  278 (342)
T ss_dssp             EEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT-------------------
T ss_pred             ccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC-------------------
Confidence            112221111          111234555444 2222221        122  344456666                   


Q ss_pred             cccceeeccccceEEEEEeCCCCCceEEEe-eeCCeEEEeecCcc
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASL-SYDGRVVVESVKPF  347 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~vw~~~~~  347 (351)
                      .+.+..+.- ..++.+|+.+.+..-+|.+. ..++.+.+||..+-
T Consensus       279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  279 HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            677777753 34578999998776566554 46899999998753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.00011  Score=65.88  Aligned_cols=199  Identities=13%  Similarity=-0.004  Sum_probs=112.9

Q ss_pred             EecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----CeEEEEEcccCCc
Q 018697          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGK  202 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~  202 (351)
                      =+.|+|+.+...+-..+.+.+.|..+.+...++....      ....++++|+++++++.+.+    .++...+......
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~  272 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW  272 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence            3556666422233335667777777533333333222      44567899999998887632    2333333322221


Q ss_pred             CceeecceeEEEEcCCCCCcEEEEecCCCeEEEEeccc----CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          203 TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       203 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      ...+....  .-++.++|++.++   .++.|.+.|.++    ....+..+. -......+.++|||..+++++..+.++.
T Consensus       273 ~vvfni~~--iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        273 VVVFNIAR--IEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             EEEEchHH--HHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            11111110  1144567874443   357899999886    223344443 4566789999999944555666699999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.|+...... +. . .    -+.....+....--. .....+|.++|. .+.|--.|..|..|++.+
T Consensus       347 VIDv~k~k~~-~~-~-~----~~~~~~vvaevevGl-GPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDL-FD-G-K----IKPRDAVVAEPELGL-GPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhh-hh-c-c----CCccceEEEeeccCC-CcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            9999872110 00 0 0    000011222332222 345678999987 788888999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.11  E-value=0.0015  Score=55.78  Aligned_cols=199  Identities=11%  Similarity=0.097  Sum_probs=111.1

Q ss_pred             EeeeecCCC----CcceEEEeeeeeCC-----C-CEEEEEEeCCC---CCeEEEEeeecCCcceeeeeeCCCCCceEEEE
Q 018697           18 CISDVKADT----DHTSFLTGTLSLKE-----E-NEVHLLRLSSG---GTELICEGLFSHPNEIWDLSSCPFDQRIFSTV   84 (351)
Q Consensus        18 ~~~~~~~~~----~~~~~~~g~~~~~~-----~-~~i~~~~~~~~---~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~   84 (351)
                      .+..+....    ....+++||.....     . |.+.++++...   ...+........+++|.+++-.  +.+|+++ 
T Consensus        28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-  104 (321)
T PF03178_consen   28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-  104 (321)
T ss_dssp             EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-
T ss_pred             EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-
Confidence            444444444    36788889865432     2 88999999984   2244444445567899999876  3346664 


Q ss_pred             eecCCcceEEEEEcccccCCCCCCc-ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018697           85 FSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (351)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  163 (351)
                          ..+.|.+|++..       .. ......+.. ...+.++...  ++ .++++.....+.++..+............
T Consensus       105 ----~g~~l~v~~l~~-------~~~l~~~~~~~~-~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d  169 (321)
T PF03178_consen  105 ----VGNKLYVYDLDN-------SKTLLKKAFYDS-PFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARD  169 (321)
T ss_dssp             ----ETTEEEEEEEET-------TSSEEEEEEE-B-SSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEE
T ss_pred             ----ecCEEEEEEccC-------cccchhhheecc-eEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEec
Confidence                346899999983       12 233333322 2255666554  34 36676556778877665422222222222


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-------C-cCc---eeecce-eEEE---EcCC--CCCc----
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-------G-KTN---SIEHAH-VRNV---DYDT--KKKH----  222 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~-~~~---~~~~~~-v~~~---~~~~--~~~~----  222 (351)
                        .....++++.+-++++.++++..+|.+.++.....       . .+.   .+..+. |+++   .+.|  .+..    
T Consensus       170 --~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~  247 (321)
T PF03178_consen  170 --YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNR  247 (321)
T ss_dssp             --SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEE
T ss_pred             --CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccccc
Confidence              12336888888866678888899999999887631       1 111   112222 6666   6656  2221    


Q ss_pred             -EEEEecCCCeEEEE
Q 018697          223 -LLVTAADESGIHLW  236 (351)
Q Consensus       223 -~l~~~~~dg~i~i~  236 (351)
                       .++.++.+|.|...
T Consensus       248 ~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  248 PQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEEETTS-EEEE
T ss_pred             ceEEEEecCCEEEEE
Confidence             36668888888744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.00056  Score=61.19  Aligned_cols=122  Identities=7%  Similarity=-0.016  Sum_probs=84.2

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee-eeeeccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      |+..|.--++...+++++.+    +.-|.+.+|+-.         ..+.. ....+..+.+..+..+++.. ++++++..
T Consensus        32 ~~~~v~lTc~dst~~~l~~G----sS~G~lyl~~R~---------~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~   97 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMG----SSAGSVYLYNRH---------TGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTAS   97 (726)
T ss_pred             CcceEEEEEeecCCceEEEe----cccceEEEEecC---------chhhhcccccCccceEEEEEecchhH-hhhhhcCC
Confidence            44455555666677888774    688899999976         22222 12222344455556666665 46666888


Q ss_pred             CcEEEEEcCCCCCCccc-ccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          143 ENIFLWSLDCSNKNAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      |.|.++-++........ .......|...|++++|++++..+++|...|+|..-.+..
T Consensus        98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            99999998874433332 3333445778999999999999999999999999888776

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.06  E-value=0.00077  Score=59.37  Aligned_cols=147  Identities=10%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+....-....+.++|+++.  ++-+.||...|+....   . ....      ......++|.+.++ +++-...+.|.+
T Consensus        27 ~lg~~~~~p~~ls~npngr~--v~V~g~geY~iyt~~~---~-r~k~------~G~g~~~vw~~~n~-yAv~~~~~~I~I   93 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRF--VLVCGDGEYEIYTALA---W-RNKA------FGSGLSFVWSSRNR-YAVLESSSTIKI   93 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSE--EEEEETTEEEEEETTT---T-EEEE------EEE-SEEEE-TSSE-EEEE-TTS-EEE
T ss_pred             cCCCCCcCCeeEEECCCCCE--EEEEcCCEEEEEEccC---C-cccc------cCceeEEEEecCcc-EEEEECCCeEEE
Confidence            33344556789999999994  4446689999988331   1 1111      12566788998544 666666888999


Q ss_pred             EEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018697          195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       195 wd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      +.--..+....+..+. +..+-.   |. +|...+.+ .|.+||..+ ++.+.++..  .+|..+.|++++ .+++..+.
T Consensus        94 ~kn~~~~~~k~i~~~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g-~~val~t~  164 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPFSVEKIFG---GN-LLGVKSSD-FICFYDWET-GKLIRRIDV--SAVKYVIWSDDG-ELVALVTK  164 (443)
T ss_dssp             EETTEE-TT-----SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTS-SEEEEE-S
T ss_pred             EEcCccccceEEcCCcccceEEc---Cc-EEEEECCC-CEEEEEhhH-cceeeEEec--CCCcEEEEECCC-CEEEEEeC
Confidence            6433334434454343 444433   76 56655544 899999997 677888763  348999999999 88888876


Q ss_pred             CCeEEEEEcCC
Q 018697          274 DSTVNLWLVST  284 (351)
Q Consensus       274 dg~i~iwd~~~  284 (351)
                      + .+.+++...
T Consensus       165 ~-~i~il~~~~  174 (443)
T PF04053_consen  165 D-SIYILKYNL  174 (443)
T ss_dssp             --SEEEEEE-H
T ss_pred             C-eEEEEEecc
Confidence            5 577777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.005  Score=53.76  Aligned_cols=198  Identities=17%  Similarity=0.122  Sum_probs=127.2

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM  200 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~  200 (351)
                      ....+...+++..+.++......+...+.. ......... .  + ......++.++.+..+++.. .++.|.+.|..+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~-~--g-~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~  106 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLS-V--G-GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN  106 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeecc-C--C-CccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence            456678888887655555433344444433 111111000 0  0 02455778888888666554 5689999998887


Q ss_pred             CcCceeecce-eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ........+. ...++++|++.++.++-.  .++++.+.|..+ .........-..+ ..++++|+|...+++-..++.|
T Consensus       107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v  184 (381)
T COG3391         107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTV  184 (381)
T ss_pred             ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeE
Confidence            7777777666 889999999986666655  478999999887 4455554433344 8999999994456666688999


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccce-----eeccccceEEEEEeCCCCCceEEEeeeC--CeEEEeecCc
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYD--GRVVVESVKP  346 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~vw~~~~  346 (351)
                      .+.|...                   .....     ...... ....+.++|+|....++...+  +.+...|...
T Consensus       185 ~vi~~~~-------------------~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         185 SVIDTSG-------------------NSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             EEEeCCC-------------------cceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence            9999776                   22221     122222 346788999998555555444  5777776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=1.5e-05  Score=72.22  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=87.1

Q ss_pred             eeEECCCCCcEEEee----cCCeEEEEEcccCCcCceeecc-eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          173 GGAWDPHDVNAVAAT----CESSVQFWDLRSMGKTNSIEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      -.+|+|..+.+++++    ..|.|.||- ++|++......+ |+.+++|+|..- +|+.|-+-|.+.+|...+ .+.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~-~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT-TETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHH-HHhhccccceeEEEecCC-ceeeee
Confidence            347999999888875    468888874 567765555433 388999999875 888898999999999876 444444


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...|..+|..+.|+|+| ..++|+..-|.+.+|....
T Consensus        97 ~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence            55799999999999999 9999999999999997763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.01  E-value=0.0019  Score=56.11  Aligned_cols=273  Identities=11%  Similarity=0.098  Sum_probs=127.3

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      |..+.+..+...|++|.    ..+++.++++......-  ..   -...-....+.+-.          ..++.-.|-|+
T Consensus         4 v~~vs~a~~t~Elav~~----~~GeVv~~k~~~n~~~~--~~---~~~~~~~~~~~~~~----------~~~~~~~l~di   64 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGL----ESGEVVLFKFGKNQNYG--NR---EQPPDLDYNFRRFS----------LNNSPGKLTDI   64 (395)
T ss_dssp             EEEEEEETTTTEEEEEE----TTS-EEEEEEEE-----------------------S------------GGGSS-SEEE-
T ss_pred             EEEEEecCCCceEEEEc----cCCcEEEEEcccCCCCC--cc---CCCcccCccccccc----------ccCCCcceEEe
Confidence            55666777888888886    46888888887643211  00   00111122222210          11222234444


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc---ccCcccceeeeE
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGA  175 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~  175 (351)
                      ...........+.+..-+....++|++++.|.-|-  ++++..+|.+.|.|++.+.-........   .......++++.
T Consensus        65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGF--vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie  142 (395)
T PF08596_consen   65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGF--VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE  142 (395)
T ss_dssp             GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSE--EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred             hhhCCcccccccCchhheeccCCcEeEEecCCCcE--EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence            43222222234566666777789999999986664  6677889999999998543222211111   111233577777


Q ss_pred             EC-----CCC---CcEEEeecCCeEEEEEccc-CCcCceee-------c-ceeEEE-EcCCC-CC---------------
Q 018697          176 WD-----PHD---VNAVAATCESSVQFWDLRS-MGKTNSIE-------H-AHVRNV-DYDTK-KK---------------  221 (351)
Q Consensus       176 ~~-----~~~---~~l~~~~~d~~i~iwd~~~-~~~~~~~~-------~-~~v~~~-~~~~~-~~---------------  221 (351)
                      |.     .|+   -.+++|++.|.+.+|.+.- ..-.....       . +.+..+ .++.+ |.               
T Consensus       143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence            74     122   3588889999999998752 11111111       0 112211 12111 00               


Q ss_pred             ---cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec-----CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          222 ---HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN-----PEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       222 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                         .-++....+..++++...+.+...+.+ ...-....+.+-     ..+ ..|++-..+|.|++|.+..         
T Consensus       223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~---------  291 (395)
T PF08596_consen  223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPS---------  291 (395)
T ss_dssp             ----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT---------
T ss_pred             CCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCC---------
Confidence               013334446789999988633333333 222233344442     244 7888889999999999987         


Q ss_pred             ccccCCcccccccceeeccc----cceEEEEEeCCCCCceEEEee
Q 018697          294 SLVESPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~  334 (351)
                                .+.+...+-.    ...+....++++|. +++-.+
T Consensus       292 ----------Lkei~~~~l~~~~d~~~~~~ssis~~Gd-i~~~~g  325 (395)
T PF08596_consen  292 ----------LKEIKSVSLPPPLDSRRLSSSSISRNGD-IFYWTG  325 (395)
T ss_dssp             ------------EEEEEE-SS---HHHHTT-EE-TTS--EEEE-S
T ss_pred             ----------chHhhcccCCCccccccccccEECCCCC-EEEEeC
Confidence                      4555444332    22344566788887 454443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.94  E-value=0.0034  Score=52.31  Aligned_cols=199  Identities=14%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      ..++++.++++++..-+  .-...|.|-|+.         ..+.+..+...  .  |.-.-|.++.-+.+-+.||.+.-.
T Consensus        98 ~~~~ls~dgk~~~V~N~--TPa~SVtVVDl~---------~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v  162 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNF--TPATSVTVVDLA---------AKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTV  162 (342)
T ss_dssp             GGEEE-TTSSEEEEEEE--SSSEEEEEEETT---------TTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEE
T ss_pred             cceEEccCCcEEEEEcc--CCCCeEEEEECC---------CCceeeeecCC--C--EEEEEecCCCceEEEecCCceEEE
Confidence            34566777777666432  223467777776         44555544321  1  222334443324555889999999


Q ss_pred             EcCCCCCCcccccccccCcccc-eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eee------------cceeEE
Q 018697          149 SLDCSNKNAQVQSKQSSGMLHY-LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIE------------HAHVRN  213 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~------------~~~v~~  213 (351)
                      .+....+........+.....+ +..-++...+..++..+.+|.|+--|+.......  .+.            ++.-.-
T Consensus       163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~  242 (342)
T PF06433_consen  163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL  242 (342)
T ss_dssp             EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred             EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence            9985554432221111111112 2233444455566667888999888887554211  111            001455


Q ss_pred             EEcCCCCCcEEEEe--cCCC-------eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe-eCCCeEEEEEcC
Q 018697          214 VDYDTKKKHLLVTA--ADES-------GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVS  283 (351)
Q Consensus       214 ~~~~~~~~~~l~~~--~~dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~  283 (351)
                      +++++....+++.-  +.++       .|.+||+.+ ++.+.++.. ..++.+|..+.+...+|++. ..++.+.+||..
T Consensus       243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             eeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            77776555233321  1122       488888887 666777763 45788999998886677655 458999999999


Q ss_pred             C
Q 018697          284 T  284 (351)
Q Consensus       284 ~  284 (351)
                      +
T Consensus       321 t  321 (342)
T PF06433_consen  321 T  321 (342)
T ss_dssp             T
T ss_pred             C
Confidence            9

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00022  Score=61.68  Aligned_cols=143  Identities=8%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             CCCcEEE-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcE------EEEecCCCeEEEEecccCCc-ceeEee
Q 018697          179 HDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL------LVTAADESGIHLWDLRMLKA-PIQELP  249 (351)
Q Consensus       179 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~------l~~~~~dg~i~i~d~~~~~~-~~~~~~  249 (351)
                      +.+.|+. +.....++-.|++.|+.+....... |+-+.+.|+.+.-      -+.|-+|..|.-||+|-.+. .+...+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3344443 4456788899999999888887555 8888888875410      13377888999999986443 233333


Q ss_pred             CCC----CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          250 GHT----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       250 ~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      +|.    ....|.+-..+|  +++.|+.+|-||+||.-.                   ...-..+++-..+|..|..+.+
T Consensus       424 ~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-------------------~~AKTAlPgLG~~I~hVdvtad  482 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-------------------RRAKTALPGLGDAIKHVDVTAD  482 (644)
T ss_pred             ccccccccccceeeecCCc--eEEEeecCCcEEeehhhh-------------------hhhhhcccccCCceeeEEeecc
Confidence            333    334555555554  999999999999999854                   3444456777889999999999


Q ss_pred             CCceEEEeeeCCeEEEeec
Q 018697          326 EPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~~  344 (351)
                      |.++|+||  +..+.+-++
T Consensus       483 GKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  483 GKWILATC--KTYLLLIDT  499 (644)
T ss_pred             CcEEEEec--ccEEEEEEE
Confidence            99877766  456665554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.88  E-value=0.0062  Score=49.25  Aligned_cols=172  Identities=13%  Similarity=0.240  Sum_probs=110.6

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCCCcEEEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~  139 (351)
                      +.+-...|.++.|+|+.+.|+++.    ....-.||--.         .++.+.++.-. -...-.+.+..++.  ++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~----n~p~~iVElt~---------~GdlirtiPL~g~~DpE~Ieyig~n~--fvi~  145 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVT----NKPAAIVELTK---------EGDLIRTIPLTGFSDPETIEYIGGNQ--FVIV  145 (316)
T ss_pred             cccccccccceeeCCCcceEEEec----CCCceEEEEec---------CCceEEEecccccCChhHeEEecCCE--EEEE
Confidence            445566699999999999999983    44444455433         46666665321 22334677877777  5555


Q ss_pred             -ecCCcEEEEEcCCCCCCccccc-----ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee------
Q 018697          140 -IDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE------  207 (351)
Q Consensus       140 -~~d~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------  207 (351)
                       -.+..+.++.++..........     ...........+++|.|.+..|+++-...-+.||............      
T Consensus       146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence             5678888888775432221111     1111114468899999999999999888888887766433111111      


Q ss_pred             c------ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          208 H------AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       208 ~------~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      .      ..+..+.|++....+++-+.+++.+.-.|..  +.++..+.
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~ls  271 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLS  271 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEE
Confidence            0      0178889998777788889999988888876  44444443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.88  E-value=3e-05  Score=59.68  Aligned_cols=143  Identities=10%  Similarity=0.028  Sum_probs=91.4

Q ss_pred             EEEeecCCeEEEEEcccCCcCceeecceeEEE-EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE-Ee
Q 018697          183 AVAATCESSVQFWDLRSMGKTNSIEHAHVRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV-CC  260 (351)
Q Consensus       183 l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~  260 (351)
                      +...+.++.|+-++++..+....-..- +.+. ....-+. -+++|+.+|.|++|.....+.....+..-...|.++ .-
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~~~v~~~~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERF-IDEGQRVVTASA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhh-hhcceeecccCc-eEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            555677888888887754332222211 1111 1111223 588899999999999875443333232223333332 22


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEe--eeCC
Q 018697          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASL--SYDG  337 (351)
Q Consensus       261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg  337 (351)
                      -.++ .+.+++..||.|+.|++..                   .+.+.....|. .++..+..+..++ +++.+  |.|.
T Consensus       111 ~~~~-~~~c~~~~dg~ir~~n~~p-------------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~  169 (238)
T KOG2444|consen  111 GRDS-SLGCVGAQDGRIRACNIKP-------------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDR  169 (238)
T ss_pred             cccc-ceeEEeccCCceeeecccc-------------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccch
Confidence            2333 5899999999999999987                   66666666676 5666666666666 67777  8899


Q ss_pred             eEEEeecCccc
Q 018697          338 RVVVESVKPFL  348 (351)
Q Consensus       338 ~v~vw~~~~~~  348 (351)
                      .++.|++.++.
T Consensus       170 ~~k~W~ve~~~  180 (238)
T KOG2444|consen  170 VLKKWNVEKIK  180 (238)
T ss_pred             hhhhcchhhhh
Confidence            99999998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.86  E-value=0.0032  Score=55.43  Aligned_cols=182  Identities=12%  Similarity=-0.060  Sum_probs=99.1

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeE-EEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  155 (351)
                      +..++++    +.++.+.-+|..         +++.+=+..... .+.+ ... .++.  +++...++.+.-+|..+++.
T Consensus       120 ~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~~-~~~ssP~v-~~~~--v~v~~~~g~l~ald~~tG~~  182 (394)
T PRK11138        120 GGKVYIG----SEKGQVYALNAE---------DGEVAWQTKVAG-EALSRPVV-SDGL--VLVHTSNGMLQALNESDGAV  182 (394)
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCCcccccCCC-ceecCCEE-ECCE--EEEECCCCEEEEEEccCCCE
Confidence            4455553    577888888876         344433332221 1111 111 1333  56666688999999988776


Q ss_pred             CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCC--CCCcEE
Q 018697          156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLL  224 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l  224 (351)
                      .................+-..  .+..++.++.++.+..+|..+++.........         ...+.-+|  .+. .+
T Consensus       183 ~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~v  259 (394)
T PRK11138        183 KWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VV  259 (394)
T ss_pred             eeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EE
Confidence            554432210000000001111  12357777888999999999988766543211         11111222  233 45


Q ss_pred             EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +.++.+|.+..+|..+ ++.+-....  .....+..  .+ ..++.++.+|.+..+|..+
T Consensus       260 y~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~t  313 (394)
T PRK11138        260 YALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRG  313 (394)
T ss_pred             EEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCC
Confidence            6677889999999987 544433321  11112222  34 5677778899999999987

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.84  E-value=0.0062  Score=51.99  Aligned_cols=135  Identities=10%  Similarity=0.083  Sum_probs=82.4

Q ss_pred             CcEEEEEcCCC-CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeec-ce--eEEEEcC
Q 018697          143 ENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-AH--VRNVDYD  217 (351)
Q Consensus       143 ~~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-~~--v~~~~~~  217 (351)
                      |.|.++++... ....++..........+|++++--  +..|+++. ++.|.+|++...+ ....-.. ..  +.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999999973 111122211112234478888655  33444443 5899999999877 2222221 11  6666654


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                        +. +++.|.....+.++..+.....+..+.  ....+++++.|-+++ ..++.+..+|.+.++....
T Consensus       139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 --KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             --TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             --cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence              43 688888888888886654233233332  345678899998787 6999999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.013  Score=51.95  Aligned_cols=198  Identities=11%  Similarity=0.062  Sum_probs=105.0

Q ss_pred             ceeEEEecCCCCCcEEEEecCC----cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---------
Q 018697          122 KINCVLWWSSGRHDKLVSIDEE----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---------  188 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------  188 (351)
                      .+....++|++++++++-+..|    .++++|+.++......+...      ....+.|.++++.++....         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccC
Confidence            3446789999997444434444    49999999763332222211      2234999999888776653         


Q ss_pred             --CCeEEEEEcccCCcC--ceeecce----eEEEEcCCCCCcEEEEecCC---CeEEEEecccC---CcceeEeeCCCCc
Q 018697          189 --ESSVQFWDLRSMGKT--NSIEHAH----VRNVDYDTKKKHLLVTAADE---SGIHLWDLRML---KAPIQELPGHTHW  254 (351)
Q Consensus       189 --d~~i~iwd~~~~~~~--~~~~~~~----v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~---~~~~~~~~~~~~~  254 (351)
                        ...|+.|.+.+....  ..+....    ...+..+++++++++.....   ..+++.|+...   ......+......
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG  278 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence              234777887765443  2333222    56788999999766654433   45888888752   2234444433434


Q ss_pred             ee-EEEecCCCCCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc--eEEEEEeCCCCCc
Q 018697          255 TW-AVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPW  328 (351)
Q Consensus       255 v~-~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  328 (351)
                      +. .+... .+ .+++....   .+.|...++.....                ......+..+..  .+..+...  +.+
T Consensus       279 ~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~----------------~~~~~~l~~~~~~~~l~~~~~~--~~~  338 (414)
T PF02897_consen  279 VEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP----------------AEWWTVLIPEDEDVSLEDVSLF--KDY  338 (414)
T ss_dssp             -EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG----------------GGEEEEEE--SSSEEEEEEEEE--TTE
T ss_pred             eEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc----------------ccceeEEcCCCCceeEEEEEEE--CCE
Confidence            43 33333 33 34443322   44666666665110                011113444444  45555543  444


Q ss_pred             eEEEeeeCCe--EEEeecC
Q 018697          329 IFASLSYDGR--VVVESVK  345 (351)
Q Consensus       329 ~l~s~~~dg~--v~vw~~~  345 (351)
                      +++..-.++.  |+++++.
T Consensus       339 Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  339 LVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEEETTEEEEEEEETT
T ss_pred             EEEEEEECCccEEEEEECC
Confidence            6666666654  6677766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.79  E-value=0.0016  Score=51.44  Aligned_cols=125  Identities=7%  Similarity=-0.044  Sum_probs=83.6

Q ss_pred             cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec
Q 018697          129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH  208 (351)
Q Consensus       129 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  208 (351)
                      .++.+.+++.++..+.+.--|..+++...+.....      .+.+-+.- -++.++.|+..|.+++.+..+|.....+..
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence            34555556666777888888888766555444332      33332222 367799999999999999999988777764


Q ss_pred             ce-e-EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018697          209 AH-V-RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (351)
Q Consensus       209 ~~-v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  262 (351)
                      .. | ......+++. ++..|+.|++.+..|.++ ...+...+.-.+...+-+..|
T Consensus        92 ~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   92 LETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             hhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecC
Confidence            44 2 2334566777 899999999999999997 546665553333333444455

>smart00320 WD40 WD40 repeats

Probab=97.79  E-value=6.2e-05  Score=40.90  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             cccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .++...+..|...|.++.|++++. ++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            345666778888999999999887 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00012  Score=64.53  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce-eE-EEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR-NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~-v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                      .+.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++. ++. +. +++|.|||+ ++++|-.||+|++.|..+.. .+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~-~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG-RLV   98 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC-cee
Confidence            57788999999999999999999999888 67777777 333 55 999999998 99999999999999999844 343


Q ss_pred             E-eeCCCCceeEEEecC
Q 018697          247 E-LPGHTHWTWAVCCNP  262 (351)
Q Consensus       247 ~-~~~~~~~v~~~~~~~  262 (351)
                      . ...-...|.++-|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            3 223456788888874

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.75  E-value=0.022  Score=49.11  Aligned_cols=233  Identities=11%  Similarity=0.078  Sum_probs=101.9

Q ss_pred             CCEEEEEEeCCCCC---eEEEEeeecCC-cceeeeeeC-----------CCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018697           41 ENEVHLLRLSSGGT---ELICEGLFSHP-NEIWDLSSC-----------PFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (351)
Q Consensus        41 ~~~i~~~~~~~~~~---~~~~~~~~~h~-~~v~~i~~~-----------~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (351)
                      ...+..+++++++.   +++...-..+. ++.+..-|+           .+.++|++-   +=....|.|.|+.....  
T Consensus        36 pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~P---gL~SsrIyviD~~~dPr--  110 (461)
T PF05694_consen   36 PDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILP---GLRSSRIYVIDTKTDPR--  110 (461)
T ss_dssp             --EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEE---BTTT--EEEEE--S-TT--
T ss_pred             CCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEee---eeccCcEEEEECCCCCC--
Confidence            45667777776543   34434333443 456655554           245567775   34677899999874321  


Q ss_pred             CCCcceeeeeeec---cc----cceeEEEecCCCCCcEEEE-ec-C----CcEEEEEcCCCCCCcccccccccCccccee
Q 018697          106 NSPQLERIAALDA---HV----GKINCVLWWSSGRHDKLVS-ID-E----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus       106 ~~~~~~~~~~~~~---h~----~~v~~~~~~~~~~~~~~~~-~~-d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                         ..+..+.++.   +.    .....+..-|+|. +++++ +. +    |-+.++|-++.+....-..  ..+....-+
T Consensus       111 ---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~--~~~~~~~gY  184 (461)
T PF05694_consen  111 ---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEK--DRGPQPFGY  184 (461)
T ss_dssp             ---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--S--B-TT-----
T ss_pred             ---CCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceecc--CCCCCCCCC
Confidence               2233344432   11    1222333447787 35554 32 2    4566777664322111111  111223567


Q ss_pred             eeEECCCCCcEEEeec--------------------CCeEEEEEcccCCcCceeecce----eEEEEc--CCCCCcEEEE
Q 018697          173 GGAWDPHDVNAVAATC--------------------ESSVQFWDLRSMGKTNSIEHAH----VRNVDY--DTKKKHLLVT  226 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~----v~~~~~--~~~~~~~l~~  226 (351)
                      ++-|.|..+.++++..                    ..++++||+.+.+.++++..+.    +..+.|  .|+..+-++.
T Consensus       185 Dfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg  264 (461)
T PF05694_consen  185 DFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVG  264 (461)
T ss_dssp             -EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEE
T ss_pred             CeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEE
Confidence            7788887777776642                    3589999999999998888653    555555  5666655555


Q ss_pred             ecCCCeEEEEecccCCc----ceeEeeC-----C------------CCceeEEEecCCCCCeEE-EeeCCCeEEEEEcCC
Q 018697          227 AADESGIHLWDLRMLKA----PIQELPG-----H------------THWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVST  284 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~----~~~~~~~-----~------------~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~  284 (351)
                      +.-..+|..|-....+.    .+..+..     -            ..-|+.|..|.|. ++|. ++-.+|.|+.||+..
T Consensus       265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SS
T ss_pred             EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCC
Confidence            54555555554422121    1222211     0            2347899999999 6665 555699999999987


Q ss_pred             C
Q 018697          285 S  285 (351)
Q Consensus       285 ~  285 (351)
                      .
T Consensus       344 P  344 (461)
T PF05694_consen  344 P  344 (461)
T ss_dssp             T
T ss_pred             C
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.75  E-value=0.018  Score=47.96  Aligned_cols=227  Identities=11%  Similarity=0.105  Sum_probs=120.1

Q ss_pred             CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018697           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (351)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (351)
                      .....++++|+.    +| ++++++..........    +...|..+...|+-+.+++.     .|+.+.++++......
T Consensus         4 ~~~~~~L~vGt~----~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    4 DSWGDRLLVGTE----DG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPV   69 (275)
T ss_pred             ccCCCEEEEEEC----CC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEE-----cCCccEEEEchhhccc
Confidence            346788999963    34 8888883333222222    23349999999988888776     4699999999843221


Q ss_pred             CCCCcce-e-----eeeeeccccceeEEE--ecCCCCCcEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeee
Q 018697          105 LNSPQLE-R-----IAALDAHVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGG  174 (351)
Q Consensus       105 ~~~~~~~-~-----~~~~~~h~~~v~~~~--~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~  174 (351)
                      ....... .     ...+ .....+...+  -...+.. .++......|.+|.........  .......   ...+.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~-~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i  144 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSR-RLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSSI  144 (275)
T ss_pred             cccccccccccccccccc-cccCCeeEEeeccccccce-EEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEEE
Confidence            1100000 0     0011 1222344433  1223332 4444445699999887532221  1111111   2378899


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeec-------------ce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      +|.  ++.++.+..+ ...+.|+.++.....+..             .+ +..+... ++. +|++-  |..-.+.|.. 
T Consensus       145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~~-  216 (275)
T PF00780_consen  145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNKN-  216 (275)
T ss_pred             EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcCC-
Confidence            998  4566666644 477889886654322210             01 3333333 344 45432  2333344443 


Q ss_pred             CCccee--EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          241 LKAPIQ--ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       241 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                       +.+.+  .+.- ......+++..   .+|+.... +.|.||++.+
T Consensus       217 -G~~~r~~~i~W-~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~  256 (275)
T PF00780_consen  217 -GEPSRKSTIQW-SSAPQSVAYSS---PYLIAFSS-NSIEVRSLET  256 (275)
T ss_pred             -CCcCcccEEEc-CCchhEEEEEC---CEEEEECC-CEEEEEECcC
Confidence             33332  3332 33556666643   56666665 4599999999

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.73  E-value=0.0055  Score=42.08  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                      +.|..+|.+-|++|++|..||+|+-.   ..+.++.. ...|+.++-...  ..++-+-.+|+|-+|+...         
T Consensus         8 ~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~---------   72 (111)
T PF14783_consen    8 FDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ---------   72 (111)
T ss_pred             EecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc---------
Confidence            34455666789999999999999954   36677664 456777766554  4688889999999998754         


Q ss_pred             ccccCCcccccccceeeccccceEEEEEe---CCCCCceEEEeeeCCeEE
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFASLSYDGRVV  340 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~v~  340 (351)
                                 . +...+.... +.++.+   ..+|..-|++|-.+|.|-
T Consensus        73 -----------R-lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 -----------R-LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----------e-eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                       2 222222222 444443   345554688888888774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00021  Score=62.96  Aligned_cols=70  Identities=16%  Similarity=0.304  Sum_probs=63.2

Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee-EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +.-+.|+|.-+ ++|.+..+|.|-+..+.  .+.+.++..|...++ +++|.||| .+|+.|-.||+|++.|+..
T Consensus        23 i~~~ewnP~~d-LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   23 IKRIEWNPKMD-LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             eEEEEEcCccc-hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccC
Confidence            88899999998 99999999999999887  445778877777777 99999999 9999999999999999998

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00036  Score=62.34  Aligned_cols=113  Identities=10%  Similarity=0.021  Sum_probs=84.5

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                      .+.--+++..+++++.|+.-|.+++|+-..++....-. ..+  +..+..+++.. ++|.|+..|.|.++.+.....+-.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcc
Confidence            34444566678999999999999999987665433222 133  66677787775 889999999999999876322211


Q ss_pred             Ee-----eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          247 EL-----PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       247 ~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+     +.|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence            11     1367889999999999 9999999999998877765

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00012  Score=39.74  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=33.5

Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                      ++...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            3566677888999999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0035  Score=43.00  Aligned_cols=102  Identities=13%  Similarity=0.099  Sum_probs=67.8

Q ss_pred             eeEEEe---cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          123 INCVLW---WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       123 v~~~~~---~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      |+++++   ..+|...+++++.|..|++|+-..  ....+..      ...+.++.-... ..++.+..+|+|-+|+-. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRS-   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-
Confidence            444444   446666799999999999998662  2333332      227888877664 568888899999999753 


Q ss_pred             CCcCceeecce-eEEEE---cCCCCCcEEEEecCCCeEEE
Q 018697          200 MGKTNSIEHAH-VRNVD---YDTKKKHLLVTAADESGIHL  235 (351)
Q Consensus       200 ~~~~~~~~~~~-v~~~~---~~~~~~~~l~~~~~dg~i~i  235 (351)
                       +.+..++..+ +.+++   ++.+|..-|++|-.+|.|-+
T Consensus        72 -~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   72 -QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence             3455555444 44443   34455556888999988743

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.60  E-value=0.0024  Score=56.38  Aligned_cols=151  Identities=13%  Similarity=0.233  Sum_probs=94.1

Q ss_pred             ccceeEEEecCCCCCcEEEE--ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC----CCcEEEeecCCeEE
Q 018697          120 VGKINCVLWWSSGRHDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAATCESSVQ  193 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~  193 (351)
                      -.++..++|. ||+.++++.  -.+|.+++=|-..       +     +.-+.|.++.|.|-    ...+++.-....|.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~v-------i-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt   85 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKV-------I-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVT   85 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCccE-------e-----eccceeeeeeecCcccCCCCceEEEeccceEE
Confidence            4578889995 455555555  2355555443331       1     11126899999885    45688888899999


Q ss_pred             EEEcccC-----CcCce----eecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEec
Q 018697          194 FWDLRSM-----GKTNS----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN  261 (351)
Q Consensus       194 iwd~~~~-----~~~~~----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  261 (351)
                      +|.+...     +.+..    +...-   ...+.|+|... +|++-.....-.+++++.....++.=-...+.|.|.+|.
T Consensus        86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT  164 (671)
T PF15390_consen   86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT  164 (671)
T ss_pred             EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence            9998621     22111    11111   66789999998 666555444445677765443333322356789999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCC
Q 018697          262 PEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +||++++++.+..=.-++||-..
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCch
Confidence            99966666666554567887543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.53  E-value=0.0068  Score=48.00  Aligned_cols=101  Identities=12%  Similarity=0.013  Sum_probs=73.2

Q ss_pred             CCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018697          180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  258 (351)
                      ..+++.|+..+.+.--|..+|+.......+. +.+-+.- -|+ +++.|+..|.+++.+.++ +.....+..-..-=...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence            3456778888999989999988766554333 3332222 355 688899999999999998 54566655433222344


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...+++ .++..|+.|+..+..|.++
T Consensus       100 ~~d~~~-glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen  100 QCDFDG-GLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             EEcCCC-ceEEEecCCCcEEEecccc
Confidence            567888 8999999999999999998

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.52  E-value=0.021  Score=49.84  Aligned_cols=205  Identities=8%  Similarity=0.082  Sum_probs=107.5

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc------cc-------------------cccc-------------
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA------QV-------------------QSKQ-------------  163 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~------~~-------------------~~~~-------------  163 (351)
                      .|+.+.|.++... ++++...|.|.||.....+...      ..                   ....             
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5788889888663 7777778999888765432111      00                   0000             


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--c-----ce---eEEEEcC-----CCC--CcEEEE
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--H-----AH---VRNVDYD-----TKK--KHLLVT  226 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~-----~~---v~~~~~~-----~~~--~~~l~~  226 (351)
                      ......+|++++.+ |-.++++|..+|.+.|.|+|....+..-.  .     ..   +.++.|.     .|+  .-++++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            00113467888876 56678889999999999998765443311  1     01   7777774     222  136788


Q ss_pred             ecCCCeEEEEeccc-C-Cc----ceeEeeCCCCceeEEE-ecCC-C-------------------CCeEEEeeCCCeEEE
Q 018697          227 AADESGIHLWDLRM-L-KA----PIQELPGHTHWTWAVC-CNPE-Y-------------------DGFILSAGTDSTVNL  279 (351)
Q Consensus       227 ~~~dg~i~i~d~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~l~s~~~dg~i~i  279 (351)
                      |.+.|.+.+|.+-- . +.    .......+.++|..+. |+.+ |                   +.+++.+ .+..+++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv  239 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRV  239 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEE
Confidence            99999999998752 1 11    1111224556665554 3221 1                   1244443 3567999


Q ss_pred             EEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC----CCCCceEEEeeeCCeEEEeecCccc
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS----SREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      +....                   .+..............+.+-    ..+...|++-..+|.|+++.++...
T Consensus       240 ~~~~~-------------------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  240 FKPPK-------------------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             E-TT----------------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             EeCCC-------------------CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            98876                   33333222222223334442    1223378888899999999998754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.057  Score=47.68  Aligned_cols=183  Identities=8%  Similarity=0.059  Sum_probs=91.4

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      +.|.++.|..+...++.     ..||.+++||+.... ..  .-...+.........+....+..+|-  ++.+ .++.+
T Consensus        81 ~~iv~~~wt~~e~LvvV-----~~dG~v~vy~~~G~~-~f--sl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt-~~~~~  149 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVV-----QSDGTVRVYDLFGEF-QF--SLGEEIEEEKVLECRIFAIWFYKNGI--VVLT-GNNRF  149 (410)
T ss_pred             CCEEEEEECCCCeEEEE-----EcCCEEEEEeCCCce-ee--chhhhccccCcccccccccccCCCCE--EEEC-CCCeE
Confidence            89999999986555544     389999999985211 00  00111111122222333333333442  3333 34444


Q ss_pred             EEEEcCCCC-CCccccccc---ccCcc-cceee-eEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ceeEEEEcCC
Q 018697          146 FLWSLDCSN-KNAQVQSKQ---SSGML-HYLSG-GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AHVRNVDYDT  218 (351)
Q Consensus       146 ~iwd~~~~~-~~~~~~~~~---~~~~~-~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~v~~~~~~~  218 (351)
                      .+..-.... .........   ...+. ..... ..++.+....+....++.+.+.+-...+.   +.. +++..+++||
T Consensus       150 ~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSp  226 (410)
T PF04841_consen  150 YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSP  226 (410)
T ss_pred             EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECC
Confidence            443322111 111110000   00000 01111 23444455555555566676555333212   222 2399999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeCC-CCceeEEEecCCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEY  264 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~  264 (351)
                      +++ .++.-..+|.+.+....- .+.+.++... ......+.|.-+.
T Consensus       227 ng~-~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  227 NGK-FIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCC-EEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCC
Confidence            999 677778889999988654 5555555533 3455667776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.47  E-value=0.036  Score=51.12  Aligned_cols=152  Identities=12%  Similarity=0.120  Sum_probs=84.1

Q ss_pred             cceeEEEecCCCCCcEEEEe-----cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-------
Q 018697          121 GKINCVLWWSSGRHDKLVSI-----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------  188 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------  188 (351)
                      ..+...+.+|+|+.+.++..     .|..-.||-...+.....+....      ....-.|+|++..+.+...       
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence            46778899999996433332     24333444333223232222211      3677799999887766642       


Q ss_pred             -----CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc--CCc-ce---eEee-CCCCce
Q 018697          189 -----ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKA-PI---QELP-GHTHWT  255 (351)
Q Consensus       189 -----d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~---~~~~-~~~~~v  255 (351)
                           .+.+.+.+++.++...  .... |..+.|+|||..+++..  ++.|++--+..  .+. .+   ..+. .-...+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                 2344444555544433  2122 99999999999554444  46776622211  121 11   1122 223346


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+.|.+++ .++ .+..++.-.+|.+..
T Consensus       500 ~~l~W~~~~-~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        500 VSLDWRTGD-SLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             ccceEecCC-EEE-EEecCCCCceEEEec
Confidence            889999998 544 555555555676654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.024  Score=47.51  Aligned_cols=196  Identities=12%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             EEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce
Q 018697          126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  205 (351)
                      -.|.++...++.+--..+.|.-|+..++........    +   .+.++..-..+..|+++.  ..+.+++.+++.....
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p----~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~  100 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP----G---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITL  100 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC----C---CcccceeecCCCeEEEEc--cccEEEeccCCceeEE
Confidence            347787775444445678888898875432221111    1   233333332333344432  3355666655444222


Q ss_pred             ee---cce----eEEEEcCCCCCcEEEEec-----C-----CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          206 IE---HAH----VRNVDYDTKKKHLLVTAA-----D-----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       206 ~~---~~~----v~~~~~~~~~~~~l~~~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                      +.   .+.    .+.+...|+|..++-+-+     .     -|.++.+|. . +..++.+..+-..-+.|+|||++..++
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCCEEE
Confidence            21   111    778999999983333222     1     133555553 2 445555555566678999999994444


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC-eEEEeecC
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG-RVVVESVK  345 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~  345 (351)
                      ++=+..+.|.-|++........            .......+.......-.++...+|. +.+++..+| .|.+|+.+
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~------------~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIG------------GRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccC------------CcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC
Confidence            4555567888887762000000            0011111222334455666667776 454443333 67777655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0081  Score=52.41  Aligned_cols=139  Identities=14%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             cEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-------cEEEeecCCeEEEEEcccCCc-Cce
Q 018697          135 DKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-------NAVAATCESSVQFWDLRSMGK-TNS  205 (351)
Q Consensus       135 ~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~-~~~  205 (351)
                      +++.. .....++-.|++.++....-....      .|.-+.+.|+.+       .-+.|-.++.|.-||+|-... ...
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            34444 344556666776544332221111      355555666543       234566788999999985332 111


Q ss_pred             eecce-------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          206 IEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       206 ~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      ....+       ..|.+-..+|  .+++|+.+|.||+||. ...+.-..+.+...+|..|..+.+| .+|+..+ +..+.
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~tyLl  495 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-KWILATC-KTYLL  495 (644)
T ss_pred             eeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-cEEEEec-ccEEE
Confidence            11122       7788888787  5888999999999997 3345556677888999999999999 5555433 55777


Q ss_pred             EEEcCC
Q 018697          279 LWLVST  284 (351)
Q Consensus       279 iwd~~~  284 (351)
                      +-++..
T Consensus       496 Li~t~~  501 (644)
T KOG2395|consen  496 LIDTLI  501 (644)
T ss_pred             EEEEec
Confidence            777764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.021  Score=52.66  Aligned_cols=188  Identities=12%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             cceeeeeeCCCCCceEEEEee--cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--
Q 018697           66 NEIWDLSSCPFDQRIFSTVFS--TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--  141 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--  141 (351)
                      ..+.+.+.+|+++.++.+...  ...|..-.||-...        .........+.  ....-.|+|+|..+.++...  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--------gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--------GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--------CCcceeeecCC--CCCCceECCCCCceEEEecCcc
Confidence            467889999999998877411  11244445554431        11111112222  37778999998854433211  


Q ss_pred             ---------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE---EEcccCCc-C---ce
Q 018697          142 ---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF---WDLRSMGK-T---NS  205 (351)
Q Consensus       142 ---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~  205 (351)
                               .+.+.+.+++.+....        .....|..+.|+|||..++... ++.|++   -....+.. +   ..
T Consensus       420 ~~~v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~  490 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE  490 (591)
T ss_pred             eEEEeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence                     1233333443221111        1123799999999999988766 467776   34334431 1   11


Q ss_pred             eec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          206 IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       206 ~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      +..  .. +.++.|.+++. ++ ++..++...+|.+.-.+.....+..  ...++..|+=++.   .++....++.+
T Consensus       491 l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~  562 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVL  562 (591)
T ss_pred             eecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceE
Confidence            111  11 57899999997 44 4555554445554432322222222  2456677766652   34444556633

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.00065  Score=52.55  Aligned_cols=140  Identities=9%  Similarity=0.044  Sum_probs=84.0

Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-cce--e
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--V  211 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~--v  211 (351)
                      ++.+.+.|+.|.-+++..............     ..  ...-.-+..+++|+.+|.|++|...-.-...... ...  +
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~-----e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFID-----EG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhh-----cc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence            466678889998888874322211111111     11  1112234679999999999999877221111111 111  2


Q ss_pred             EE-EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCeEEEe--eCCCeEEEEEcCC
Q 018697          212 RN-VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSA--GTDSTVNLWLVST  284 (351)
Q Consensus       212 ~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~  284 (351)
                      -+ +.--.++. +..+++.||.|+.|+... .+.+-....|+ .++.....+..+ .+++.+  |.|..++.|++..
T Consensus       105 ~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  105 DLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccccccc-eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            22 22223333 788999999999999885 55555555566 555555555555 677777  7788888888865

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.045  Score=44.25  Aligned_cols=160  Identities=12%  Similarity=0.073  Sum_probs=92.9

Q ss_pred             ceeeeEECCCCCc-EEEeecCC-eEEEEEcccCCcCceeecc---e-eEEEEcCCCCCcEEEEecC-----CCeEEEEec
Q 018697          170 YLSGGAWDPHDVN-AVAATCES-SVQFWDLRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVTAAD-----ESGIHLWDL  238 (351)
Q Consensus       170 ~v~~~~~~~~~~~-l~~~~~d~-~i~iwd~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~  238 (351)
                      ....++++|..+. ++.+-.-| ...++|....+....+...   | .-.=.|+|||. +|+..-+     -|.|-|||.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence            3456778876554 33444444 4567898887766665422   2 44557999999 5554333     378999999


Q ss_pred             ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEE-EcCCCCCCCCCCcccccCC--cccccccce--eec--
Q 018697          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW-LVSTSNHDELPSESLVESP--NQRANSLLN--SYS--  311 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~--  311 (351)
                      +..-+.+-++..|.-....+.|.+|| +.++.+.  |-|... |....  +.....++....  +...++++.  ++.  
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~--~lNldsMePSlvlld~atG~liekh~Lp~~  222 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRT--ELNLDSMEPSLVLLDAATGNLIEKHTLPAS  222 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcc--ccchhhcCccEEEEeccccchhhhccCchh
Confidence            97556677888888888899999999 7776554  334443 22110  000000000000  000133322  222  


Q ss_pred             cccceEEEEEeCCCCCceEEEeeeC
Q 018697          312 DYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      .+...|+.++..+||. +++.+-..
T Consensus       223 l~~lSiRHld~g~dgt-vwfgcQy~  246 (366)
T COG3490         223 LRQLSIRHLDIGRDGT-VWFGCQYR  246 (366)
T ss_pred             hhhcceeeeeeCCCCc-EEEEEEee
Confidence            3445688999999987 66665543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.30  E-value=0.098  Score=45.31  Aligned_cols=207  Identities=9%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             EEEE-ecCCcEEEEEcCCCCCCcccccccc-------cCcccceeeeEECCCCCcEEEee------cCCeEEEEEcccCC
Q 018697          136 KLVS-IDEENIFLWSLDCSNKNAQVQSKQS-------SGMLHYLSGGAWDPHDVNAVAAT------CESSVQFWDLRSMG  201 (351)
Q Consensus       136 ~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~  201 (351)
                      +++. -..+.|+|.|+.+.....++.....       .+. .....+..-|+|+.++++-      ..|.+.++|-++.+
T Consensus        90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~  168 (461)
T PF05694_consen   90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE  168 (461)
T ss_dssp             EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence            5554 4678999999985443322221110       011 1223344557888887753      23577788877665


Q ss_pred             cCceeecce-----eEEEEcCCCCCcEEEEec--------------------CCCeEEEEecccCCcceeEeeCCC--Cc
Q 018697          202 KTNSIEHAH-----VRNVDYDTKKKHLLVTAA--------------------DESGIHLWDLRMLKAPIQELPGHT--HW  254 (351)
Q Consensus       202 ~~~~~~~~~-----v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~--~~  254 (351)
                      .....+...     -..+-|.|..+ ++++..                    ...++.+||+.+ .+.++++.--.  .-
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEEGQM  246 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TTEEE
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCCCCc
Confidence            554444322     66778888776 666653                    124699999997 77888887432  23


Q ss_pred             eeEEEec--CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc----ccccceeeccccceEEEEEeCCCCCc
Q 018697          255 TWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR----ANSLLNSYSDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       255 v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (351)
                      ...|.|.  |+...-++.+...++|..|--.....-. ........+.+.    -.+.+..+..-..-|+.|..|.|.++
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            5567764  4442334444445555544332210000 000000000000    00112222223456899999999998


Q ss_pred             eEEEeeeCCeEEEeecCc
Q 018697          329 IFASLSYDGRVVVESVKP  346 (351)
Q Consensus       329 ~l~s~~~dg~v~vw~~~~  346 (351)
                      +.+++-.+|.||.||+..
T Consensus       326 LYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEEEETTTTEEEEEE-SS
T ss_pred             EEEEcccCCcEEEEecCC
Confidence            888888999999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.25  E-value=0.026  Score=48.22  Aligned_cols=164  Identities=11%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcce-EEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecCCCCCcEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~  137 (351)
                      +..-...+..+.|+|....+++-|.+|.-+.. -|||-+.+.        +.....+..|  ...+..=-|.|+|..+..
T Consensus       183 v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--------g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  183 VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--------GSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--------S---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--------CCcceeeecCCCCcccccccccCCCCEEEE
Confidence            34455678899999999999999999888875 489988742        2222222222  233444568999997666


Q ss_pred             EEe-c---CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----------------CeEEEEEc
Q 018697          138 VSI-D---EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----------------SSVQFWDL  197 (351)
Q Consensus       138 ~~~-~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~  197 (351)
                      .+. .   +..|.-+|+.+++.. .+....      ....+--++++++++-=+.|                -.|+++++
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~  327 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV  327 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred             EeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence            552 2   335666777764332 111111      23344456777754432332                14566777


Q ss_pred             ccCCcCceee--------cce----eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          198 RSMGKTNSIE--------HAH----VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       198 ~~~~~~~~~~--------~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      +.+.......        .++    -....|+||++.+|+++...|...||=+.
T Consensus       328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  328 EAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            6654321111        111    45688999999888888888887777554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.042  Score=44.63  Aligned_cols=169  Identities=11%  Similarity=0.099  Sum_probs=105.0

Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      +....+.++.|+|+.+.|++..+...-.++=...|+.+.+++...   ...+++..++. +.++--.++.+.++.+....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCc
Confidence            444569999999999999999888777777667788888877443   77788888886 56666678888888876532


Q ss_pred             cc---------eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018697          243 AP---------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (351)
Q Consensus       243 ~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      ..         +..........-.++|+|.. ..|..+-+-.-+.||.+.............+       ......+  .
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~-------~~~~~~~--f  231 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLD-------PTADRDL--F  231 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccC-------cccccce--E
Confidence            11         11111124567789999999 6677777777788887764211000000000       0000000  1


Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      -..|.++.|++....+++-+.+++.+.-.+..
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            12366777876555466666666666655544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.20  E-value=0.12  Score=46.89  Aligned_cols=107  Identities=11%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcc---------------cce-eeeEECCCCCcEEEeecCC---------------
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGML---------------HYL-SGGAWDPHDVNAVAATCES---------------  190 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~~~d~---------------  190 (351)
                      ++.+.-+|..+++..............               ..+ ...++.+.+..+++++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            577888888877665544321100000               001 1234444566777776554               


Q ss_pred             ---eEEEEEcccCCcCceeecce--e-----------EEEE-cCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          191 ---SVQFWDLRSMGKTNSIEHAH--V-----------RNVD-YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       191 ---~i~iwd~~~~~~~~~~~~~~--v-----------~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                         .|.-+|+.+++....++..+  .           ..+. ..-....+++.++.+|.+..+|.++ ++.+-...
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~  328 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARP  328 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeE
Confidence               78899999998887765321  1           1111 1111112577788999999999998 65555443

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.16  E-value=0.11  Score=43.36  Aligned_cols=189  Identities=11%  Similarity=0.093  Sum_probs=87.8

Q ss_pred             eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-c
Q 018697          124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-K  202 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~  202 (351)
                      ..+....++.  ..+.+..|.  ||...++....+......   ...+..+..++++.+++++.......-||.-... .
T Consensus       107 ~~i~~l~~~~--~~l~~~~G~--iy~T~DgG~tW~~~~~~~---~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~  179 (302)
T PF14870_consen  107 FGITALGDGS--AELAGDRGA--IYRTTDGGKTWQAVVSET---SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ  179 (302)
T ss_dssp             EEEEEEETTE--EEEEETT----EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E
T ss_pred             eEEEEcCCCc--EEEEcCCCc--EEEeCCCCCCeeEcccCC---cceeEeEEECCCCcEEEEECcccEEEEecCCCccce
Confidence            3343334443  333333444  455555555544443332   2378888889999988777666666667744221 1


Q ss_pred             Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC----cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          203 TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       203 ~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ........ +..+.|.|++. +.+ ....|.|++=+.....    +++..+......+..++|.+++ ...++|+.. .+
T Consensus       180 ~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l  255 (302)
T PF14870_consen  180 PHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL  255 (302)
T ss_dssp             EEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E
T ss_pred             EEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE
Confidence            11111122 99999999987 444 4488888887722101    1111111223457899999987 777766654 33


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      . .....+.                .++.......-...++.+.|.++.+ -+ ..+.+|.|--|
T Consensus       256 ~-~S~DgGk----------------tW~~~~~~~~~~~n~~~i~f~~~~~-gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  256 L-VSTDGGK----------------TWQKDRVGENVPSNLYRIVFVNPDK-GF-VLGQDGVLLRY  301 (302)
T ss_dssp             E-EESSTTS----------------S-EE-GGGTTSSS---EEEEEETTE-EE-EE-STTEEEEE
T ss_pred             E-EeCCCCc----------------cceECccccCCCCceEEEEEcCCCc-eE-EECCCcEEEEe
Confidence            2 2222200                0222222223344578888876544 34 44568877655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.14  E-value=0.098  Score=42.35  Aligned_cols=186  Identities=11%  Similarity=0.041  Sum_probs=103.2

Q ss_pred             eecCCc--ceeeeeeCCCCCceEEEEeecCCcc--eEEEEEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCc
Q 018697           61 LFSHPN--EIWDLSSCPFDQRIFSTVFSTGESY--GAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHD  135 (351)
Q Consensus        61 ~~~h~~--~v~~i~~~~~~~~l~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~  135 (351)
                      ...|..  -.-.+.|..++..+-++    |.-|  .|+.+|+.         +++......-.. ----.++..  +..+
T Consensus        38 ~ypHd~~aFTQGL~~~~~g~LyEST----G~yG~S~l~~~d~~---------tg~~~~~~~l~~~~FgEGit~~--~d~l  102 (264)
T PF05096_consen   38 TYPHDPTAFTQGLEFLDDGTLYEST----GLYGQSSLRKVDLE---------TGKVLQSVPLPPRYFGEGITIL--GDKL  102 (264)
T ss_dssp             EEE--TT-EEEEEEEEETTEEEEEE----CSTTEEEEEEEETT---------TSSEEEEEE-TTT--EEEEEEE--TTEE
T ss_pred             ECCCCCcccCccEEecCCCEEEEeC----CCCCcEEEEEEECC---------CCcEEEEEECCccccceeEEEE--CCEE
Confidence            344553  33467776666666665    3433  68888887         444443332211 111223333  3334


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---e--
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H--  210 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~--  210 (351)
                      +..+-.++...+||.++.+.......   .   ..-+.++  .+++.|+.+.....++++|..+.+....+...   .  
T Consensus       103 ~qLTWk~~~~f~yd~~tl~~~~~~~y---~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen  103 YQLTWKEGTGFVYDPNTLKKIGTFPY---P---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEEE----S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             EEEEecCCeEEEEccccceEEEEEec---C---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence            56666789999999986444333222   1   1456666  46788888888889999998877666555422   1  


Q ss_pred             --eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------------CCCCceeEEEecCCCCCeEEEee
Q 018697          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------------GHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                        ++-+.|- +|. +.|--=....|...|..+ ++.+..+.               ....-.+.|+++|..+++++||=
T Consensus       175 ~~LNELE~i-~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  175 SNLNELEYI-NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             --EEEEEEE-TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence              6667775 453 555444555666777665 44333321               01345789999998867777663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.12  E-value=0.031  Score=49.75  Aligned_cols=150  Identities=12%  Similarity=0.141  Sum_probs=90.8

Q ss_pred             cceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecceeEEEEcCCCC----CcEEEEecCCCeEEEEecccC
Q 018697          169 HYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKK----KHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      .++.+++|. ||+.++...   .+|.+++=|.   ..+..|  .||..+.|.|-+    +.+|| -.....|.+|.+...
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF--EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF--EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc--ceeeeeeecCcccCCCCceEE-EeccceEEEEEeccC
Confidence            388999998 566554432   3444443221   122222  348999998863    33444 556679999998621


Q ss_pred             C----cceeEeeC-C--CCc--eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          242 K----APIQELPG-H--THW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       242 ~----~~~~~~~~-~--~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      .    +.+..... .  .-+  -..+.|+|.. ..|+.-.....-.+++++..                  ...+..--.
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d------------------~srVkaDi~  153 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCD------------------SSRVKADIK  153 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeC------------------CceEEEecc
Confidence            1    11111111 1  112  2457799998 77777666555556777751                  233333234


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ..+.|.+.+|.+||++++++.+..=.-++||-
T Consensus       154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            45679999999999987777776666788884

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.11  E-value=0.11  Score=42.16  Aligned_cols=229  Identities=12%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             eeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce-EEEEEcccccCCCCCCcceee
Q 018697           35 TLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERI  113 (351)
Q Consensus        35 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~  113 (351)
                      +.....+++..+.-++..++-+...   .-+..-..|+|+|.-+.-++..   -.-|+ ..++|..         ..+..
T Consensus        40 saf~~~dgs~g~a~~~eaGk~v~~~---~lpaR~Hgi~~~p~~~ravafA---RrPGtf~~vfD~~---------~~~~p  104 (366)
T COG3490          40 SAFDARDGSFGAATLSEAGKIVFAT---ALPARGHGIAFHPALPRAVAFA---RRPGTFAMVFDPN---------GAQEP  104 (366)
T ss_pred             eeeeccCCceeEEEEccCCceeeee---ecccccCCeecCCCCcceEEEE---ecCCceEEEECCC---------CCcCc
Confidence            3344566777777777765433322   2344556888998766544432   34443 5678876         22222


Q ss_pred             eeeeccccc--eeEEEecCCCCCcEEEEec-----CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe
Q 018697          114 AALDAHVGK--INCVLWWSSGRHDKLVSID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       114 ~~~~~h~~~--v~~~~~~~~~~~~~~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                      .++...++.  --.=.|+|||.. +.++-.     -|.|-|||.+..-...    .+...|--....+.|.+||+.++.+
T Consensus       105 v~~~s~~~RHfyGHGvfs~dG~~-LYATEndfd~~rGViGvYd~r~~fqrv----gE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         105 VTLVSQEGRHFYGHGVFSPDGRL-LYATENDFDPNRGVIGVYDAREGFQRV----GEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             EEEecccCceeecccccCCCCcE-EEeecCCCCCCCceEEEEeccccccee----cccccCCcCcceeEEecCCcEEEEe
Confidence            222211111  011259999995 555522     3789999998432211    1222333345678899999988876


Q ss_pred             ec------------------CCeEEEEEcccCCcCceeecc----e--eEEEEcCCCCCcEEEEecCCCe----EEEEec
Q 018697          187 TC------------------ESSVQFWDLRSMGKTNSIEHA----H--VRNVDYDTKKKHLLVTAADESG----IHLWDL  238 (351)
Q Consensus       187 ~~------------------d~~i~iwd~~~~~~~~~~~~~----~--v~~~~~~~~~~~~l~~~~~dg~----i~i~d~  238 (351)
                      ..                  .-++.+.|..+++.+.+...+    +  +..++..++|. +.+.+...|.    --+.-.
T Consensus       180 nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~  258 (366)
T COG3490         180 NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGH  258 (366)
T ss_pred             CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceee
Confidence            42                  123456666666655544322    1  88899999997 4443322221    111111


Q ss_pred             ccCCcceeEeeC-------CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          239 RMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       239 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...+++++-+..       ....|-+|+.+.+.....+|+-..+...+||..+
T Consensus       259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             ccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            111333333321       2245677887766524555555566788999998

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0023  Score=60.23  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=72.9

Q ss_pred             EEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                      .++.|++.|.+-..|++..-.+...=..-.++|++++|+.+| ..++.|-.+|.|.+||+..                  
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~------------------  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHR------------------  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccC------------------
Confidence            688899999999999875222223323346899999999999 9999999999999999998                  


Q ss_pred             ccccceeeccccceEEE---EEeCCCCCceEEEeeeCCeEEEeec
Q 018697          303 ANSLLNSYSDYEDSVYG---LAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       303 ~~~~~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                       ++.++.+..|..+.++   +.+..++. .+.++...|.  +|++
T Consensus       162 -~k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  162 -AKILKVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -CcceeeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence             7777777666554443   44555555 6777776665  5554

>PRK10115 protease 2; Provisional

Probab=96.90  E-value=0.41  Score=45.43  Aligned_cols=199  Identities=9%  Similarity=0.026  Sum_probs=102.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecC-CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC--
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--  142 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--  142 (351)
                      -.+..+.++|+++.|+.+...+| +...|++-|+.         ++..+...-...  -..++|.++++.++++.-.+  
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---------TGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---------CCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCC
Confidence            34667889999998887753333 33457788876         222211111111  14589999998755554322  


Q ss_pred             ---CcEEEEEcCCCCCCcccccccccCccccee-eeEECCCCCcEEEee---cCCeEEEEEcc--cCCcCceeecce--e
Q 018697          143 ---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLS-GGAWDPHDVNAVAAT---CESSVQFWDLR--SMGKTNSIEHAH--V  211 (351)
Q Consensus       143 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~d~~i~iwd~~--~~~~~~~~~~~~--v  211 (351)
                         ..|+.+++.++......+......   ... ....+.++++++..+   .++.+.+++..  .+.....+....  .
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~---~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  272 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDD---TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE  272 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCC---CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence               467888888763322222221111   122 333344777766544   34678888853  233222222121  2


Q ss_pred             EEEEcCCCCCcEEEEecC---CCeEEEEecccCCcceeEeeCC-C-CceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          212 RNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELPGH-T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      ..+. +..+. +++....   ...|...++.... ....+..+ . ..+..+.+.. + .++++...++.-+++-+.
T Consensus       273 ~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~-~-~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        273 YSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT-D-WLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC-C-EEEEEEEeCCEEEEEEEc
Confidence            2222 33343 3333322   2234444444212 23344444 2 3677787773 2 677777778876666554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.86  E-value=0.25  Score=42.37  Aligned_cols=243  Identities=9%  Similarity=0.039  Sum_probs=116.8

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcc-eeeeee----eccccceeEEEecCC---CCCcEEE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAAL----DAHVGKINCVLWWSS---GRHDKLV  138 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~---~~~~~~~  138 (351)
                      ..+.|+|.|+++.+++-     ..|.|++++...        .. ..+..+    .........++++|+   ..+++++
T Consensus         3 ~P~~~a~~pdG~l~v~e-----~~G~i~~~~~~g--------~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~   69 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-----RSGRIWVVDKDG--------SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY   69 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-----TTTEEEEEETTT--------EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred             CceEEEEeCCCcEEEEe-----CCceEEEEeCCC--------cCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence            45789999998776663     689999998331        11 222222    234567789999994   3334444


Q ss_pred             EecC--------CcEEEEEcCCCCC----Ccccccccc--cCcccceeeeEECCCCCcEEEeecC-------------Ce
Q 018697          139 SIDE--------ENIFLWSLDCSNK----NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATCE-------------SS  191 (351)
Q Consensus       139 ~~~d--------~~v~iwd~~~~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~  191 (351)
                      ....        ..|.-|.+.....    ...+.....  ....+....+.|.|++...++.+..             |.
T Consensus        70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~  149 (331)
T PF07995_consen   70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK  149 (331)
T ss_dssp             EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred             EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence            4421        2344455543311    111111111  1123356679999999665554421             34


Q ss_pred             EEEEEcccCC------------cCceeecce--eEEEEcCCC-CCcEEEE-ecCCCeEEEEecccCC-------------
Q 018697          192 VQFWDLRSMG------------KTNSIEHAH--VRNVDYDTK-KKHLLVT-AADESGIHLWDLRMLK-------------  242 (351)
Q Consensus       192 i~iwd~~~~~------------~~~~~~~~~--v~~~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~-------------  242 (351)
                      |.-.+....-            ....+..+.  ...++|+|. +. ++++ -+.+..=.|.-++...             
T Consensus       150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~  228 (331)
T PF07995_consen  150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY  228 (331)
T ss_dssp             EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred             EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence            4434433210            112222233  889999999 65 4443 2222222222222100             


Q ss_pred             ---------------cceeEeeCCCCceeEEEecCCC------CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          243 ---------------APIQELPGHTHWTWAVCCNPEY------DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       243 ---------------~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                                     .|+..+..| ..+..+.|....      ..+|++.-..+.|....+.....              
T Consensus       229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~--------------  293 (331)
T PF07995_consen  229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS--------------  293 (331)
T ss_dssp             TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE--------------
T ss_pred             CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC--------------
Confidence                           133334433 445666665322      14555555566777776654100              


Q ss_pred             cccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEE
Q 018697          302 RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVV  340 (351)
Q Consensus       302 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~  340 (351)
                       .......+......+.++++.|||. ++++...+|.|.
T Consensus       294 -~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy  330 (331)
T PF07995_consen  294 -VTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred             -ccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence             0111112234445799999999998 677766777664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.76  E-value=0.25  Score=41.02  Aligned_cols=145  Identities=10%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             CCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCC
Q 018697           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN  154 (351)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~  154 (351)
                      ..++.|+.+    .++| +.+++...        ........  +...|..+...|+-+.  +..-.|+.++++++....
T Consensus         5 ~~~~~L~vG----t~~G-l~~~~~~~--------~~~~~~i~--~~~~I~ql~vl~~~~~--llvLsd~~l~~~~L~~l~   67 (275)
T PF00780_consen    5 SWGDRLLVG----TEDG-LYVYDLSD--------PSKPTRIL--KLSSITQLSVLPELNL--LLVLSDGQLYVYDLDSLE   67 (275)
T ss_pred             cCCCEEEEE----ECCC-EEEEEecC--------CccceeEe--ecceEEEEEEecccCE--EEEEcCCccEEEEchhhc
Confidence            346677775    3666 88888831        12222222  2233999999998773  333336999999998543


Q ss_pred             CCccccc---------ccccCcccceeeeE--ECCCCCcEEEeecCCeEEEEEcccC-----CcCceeecce-eEEEEcC
Q 018697          155 KNAQVQS---------KQSSGMLHYLSGGA--WDPHDVNAVAATCESSVQFWDLRSM-----GKTNSIEHAH-VRNVDYD  217 (351)
Q Consensus       155 ~~~~~~~---------~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~-v~~~~~~  217 (351)
                      .......         .........+..++  -...+...++......|.+|.....     +....+..+. +..++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~  147 (275)
T PF00780_consen   68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL  147 (275)
T ss_pred             cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence            3331100         00001112333333  1223444555555668999887763     2334444444 8899998


Q ss_pred             CCCCcEEEEecCCCeEEEEeccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      ++   .++.|..+ ...+.|+.+
T Consensus       148 ~~---~i~v~~~~-~f~~idl~~  166 (275)
T PF00780_consen  148 GN---KICVGTSK-GFYLIDLNT  166 (275)
T ss_pred             CC---EEEEEeCC-ceEEEecCC
Confidence            33   46666654 477888885

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.70  E-value=0.00023  Score=61.09  Aligned_cols=144  Identities=14%  Similarity=0.119  Sum_probs=102.9

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      ......|-|.+..++.++.+..+..||-. ++......... ...++|..+++.+++.+-..+.+.+||+.+..  .+++
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqL  112 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQL  112 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHH
Confidence            34455788888889999999999999954 44444444333 77889999998777778888999999998632  2333


Q ss_pred             eC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          249 PG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       249 ~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                      +. -...-.-+.|++.. ..++.+...+.+.|++...                   ...+.....|...+++++|.+.+.
T Consensus       113 E~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgt-------------------sR~iiv~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGT-------------------SRRIIVMGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             hccCcchHHHHhhccCC-ccccccccccceEEEeccc-------------------hhhhhhhcccccceeEEEecccce
Confidence            31 11111227789988 8888888999999999987                   454544545888899999999764


Q ss_pred             ceEEEeeeCCe
Q 018697          328 WIFASLSYDGR  338 (351)
Q Consensus       328 ~~l~s~~~dg~  338 (351)
                        .+.++.|..
T Consensus       173 --vil~dcd~~  181 (615)
T KOG2247|consen  173 --VILCDCDNT  181 (615)
T ss_pred             --eeecCcHHH
Confidence              556665543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.032  Score=53.35  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             ceeeeEECCCCCcEEEe--ecCCeEEEEEcccCCcCc-----ee-------ecce-eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          170 YLSGGAWDPHDVNAVAA--TCESSVQFWDLRSMGKTN-----SI-------EHAH-VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~-----~~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      ++..+...+|+...++.  +++-.|..||+++-....     .+       .... ..++.|+|.-....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556667776654443  344588999998532211     01       1111 778999998775677788999999


Q ss_pred             EEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +..+....+.+..+. .....++++|+|.| ..++.|-..|++.-|...-
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence            998876444444443 45678999999999 9999999999999887764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.65  E-value=0.27  Score=39.89  Aligned_cols=128  Identities=12%  Similarity=0.116  Sum_probs=74.3

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      =.++...+||..         +.+.+.++.- ...=+.++  .++.. ++.+.....++++|..+......+........
T Consensus       107 Wk~~~~f~yd~~---------tl~~~~~~~y-~~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p  173 (264)
T PF05096_consen  107 WKEGTGFVYDPN---------TLKKIGTFPY-PGEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP  173 (264)
T ss_dssp             SSSSEEEEEETT---------TTEEEEEEE--SSS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred             ecCCeEEEEccc---------cceEEEEEec-CCcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECCEE
Confidence            477889999987         6777777743 34566776  55664 66665567899999886554443333222222


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee----------------cce-eEEEEcCCCCCcEEEEecC
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD  229 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~  229 (351)
                      ...++.+.|- +|...+=.-....|...|..+|+....+.                ... .+.+|++|....+++||=.
T Consensus       174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            3356667775 34333323345667777777776544332                012 8899999988877777754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.64  E-value=0.0083  Score=34.33  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=27.9

Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ...|..++|+|... ++|.+..||.|.+|.++
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            34589999999998 99999999999999984

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.63  E-value=0.3  Score=40.06  Aligned_cols=157  Identities=14%  Similarity=0.110  Sum_probs=87.2

Q ss_pred             ceeeeEECCCCCcEEEee---cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEe-cccCCcc
Q 018697          170 YLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAP  244 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  244 (351)
                      .+.+.+++++++.+++..   ....++++.  .+........+. +....|++++. +.+....+...+++. .......
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence            678889999999877765   234455544  443333333344 88889999986 555555566666663 2221211


Q ss_pred             eeEeeCC--CCceeEEEecCCCCCeEEEe--eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          245 IQELPGH--THWTWAVCCNPEYDGFILSA--GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       245 ~~~~~~~--~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      ...+...  ...|..+.++|||.+..+..  ..++.|.+=-+......         .+ .....++.........+.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---------~~-~~l~~~~~~~~~~~~~v~~v  171 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---------VP-RRLTGPRRVAPPLLSDVTDV  171 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---------Cc-ceeccceEecccccCcceee
Confidence            2222211  12899999999994444444  23566766655431110         00 00012222222334568999


Q ss_pred             EeCCCCCceEEEee-eCCeEE
Q 018697          321 AWSSREPWIFASLS-YDGRVV  340 (351)
Q Consensus       321 ~~~~~~~~~l~s~~-~dg~v~  340 (351)
                      +|.+++. +++.+. .++.+.
T Consensus       172 ~W~~~~~-L~V~~~~~~~~~~  191 (253)
T PF10647_consen  172 AWSDDST-LVVLGRSAGGPVV  191 (253)
T ss_pred             eecCCCE-EEEEeCCCCCcee
Confidence            9999988 554444 444333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.015  Score=55.10  Aligned_cols=99  Identities=16%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             CCcEEEeecCCeEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018697          180 DVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (351)
                      +..++.++..|.+-..|++..-.  ...-.... |.+++|+.+|. +++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence            45578888888898888775321  11111111 99999999998 888899999999999987 678888887777665


Q ss_pred             EEE---ecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          257 AVC---CNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       257 ~~~---~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      .+-   +..++ ..++++...|.  +|...
T Consensus       177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQN-SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence            544   44555 67888888776  56543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.57  E-value=0.0092  Score=34.14  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.2

Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCc
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK  202 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  202 (351)
                      ..|..++|+|..+.++.++.+|.|.++.+ +++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            37899999999999999999999999998 4544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.51  E-value=0.62  Score=42.39  Aligned_cols=133  Identities=12%  Similarity=0.062  Sum_probs=75.1

Q ss_pred             cEEEEEcCCCCCCccccccccc-----Ccccc-eeeeEECCCCC---cEEEeecCCeEEEEEcccCCcCceeecceeEEE
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSS-----GMLHY-LSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV  214 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~  214 (351)
                      .|.-+|..+++...........     ....+ +..+. .-++.   .+++++.+|.+...|.++++.+...... ...+
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~  334 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPM  334 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-cccc
Confidence            6888888887766554322110     10001 11111 01232   4677788999999999999988776532 1223


Q ss_pred             EcCCCCCcEEEE-----------------ecCCCeEEEEecccCCcceeEeeCCC--------Cce--eEEEecCCCCCe
Q 018697          215 DYDTKKKHLLVT-----------------AADESGIHLWDLRMLKAPIQELPGHT--------HWT--WAVCCNPEYDGF  267 (351)
Q Consensus       215 ~~~~~~~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~~  267 (351)
                      +.+| +. +++.                 ...+|.+.-+|+.+ ++.+-+.....        .+.  ..+.  -.+ .+
T Consensus       335 ~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g-~~  408 (488)
T cd00216         335 AYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG-NL  408 (488)
T ss_pred             ccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcceE--ecC-Ce
Confidence            4444 22 2221                 12357788888877 54444443210        111  1122  234 67


Q ss_pred             EEEeeCCCeEEEEEcCC
Q 018697          268 ILSAGTDSTVNLWLVST  284 (351)
Q Consensus       268 l~s~~~dg~i~iwd~~~  284 (351)
                      ++.++.||.|+.+|..+
T Consensus       409 v~~g~~dG~l~ald~~t  425 (488)
T cd00216         409 VFAGAADGYFRAFDATT  425 (488)
T ss_pred             EEEECCCCeEEEEECCC
Confidence            88888999999999998

The alignment model contains an 8-bladed beta-propeller.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.49  E-value=0.14  Score=40.24  Aligned_cols=142  Identities=15%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCC-----cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ...++-..+|+|++..-+...-+.     .+.++.|-..           ..+..+...-..-+.++|+.+.+.+.+.-+
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-----------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-----------HQVELIWNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-----------CCceeeehhccCCccccccccCcEEEEEcc
Confidence            455666778999885544211111     1234444433           112222222334467899988886555557


Q ss_pred             cCCcEEEEEc--CCCCCCc-----ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--e
Q 018697          141 DEENIFLWSL--DCSNKNA-----QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--V  211 (351)
Q Consensus       141 ~d~~v~iwd~--~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v  211 (351)
                      .+-+|.-||.  .++....     .+......+ ....-.++...+|...++.-+.++|...|+.+++.+..+..+.  +
T Consensus       178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             CceEEeeeecCCCcccccCcceeEEeccCCCcC-CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence            7888877884  3332111     111100001 1123345566678877777788999999999999998887555  9


Q ss_pred             EEEEcCCC
Q 018697          212 RNVDYDTK  219 (351)
Q Consensus       212 ~~~~~~~~  219 (351)
                      ++++|--.
T Consensus       257 tsccFgGk  264 (310)
T KOG4499|consen  257 TSCCFGGK  264 (310)
T ss_pred             EEEEecCC
Confidence            99999543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.41  E-value=0.33  Score=44.88  Aligned_cols=212  Identities=10%  Similarity=0.029  Sum_probs=102.9

Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC------CcEEEEEcCCCCCCccccccccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      .+..||...       ..+.....+. +...-.+++...+  .++++|+.|      .++..||..+..-.. .......
T Consensus       302 ~ve~yd~~~-------~~w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~  370 (571)
T KOG4441|consen  302 SVECYDPKT-------NEWSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTK  370 (571)
T ss_pred             eeEEecCCc-------CcEeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCceec-cCCccCc
Confidence            577777762       2344444443 2222344444443  356777766      457788887654211 1111111


Q ss_pred             CcccceeeeEECCCCCcEEEeecCC-----eEEEEEcccCCc--Cceeecce--eEEEEcCCCCCcEEEEecCCC-----
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAADES-----  231 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg-----  231 (351)
                      .+...+..+    +|...++|+.||     ++..||.++.+-  +.......  ...+.+  +|. +.++|+.++     
T Consensus       371 R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  371 RSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCL  443 (571)
T ss_pred             cccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCcccc
Confidence            111122222    566677777765     577788876542  22222111  222232  454 778888554     


Q ss_pred             -eEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-----eEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          232 -GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       232 -~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                       ++..||..+.. ..+..+..-.... .++.- ++ .+.+.||.|+     +|..||..+                 ..+
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~-----------------~~W  503 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NG-KIYVVGGFDGTSALSSVERYDPET-----------------NQW  503 (571)
T ss_pred             ceEEEEcCCCCceeecCCcccccccc-eEEEE-CC-EEEEECCccCCCccceEEEEcCCC-----------------Cce
Confidence             57788876521 0111111111111 12222 33 6777888776     366677765                 124


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCe-----EEEeec
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR-----VVVESV  344 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----v~vw~~  344 (351)
                      ..+.........+....+  ++. +.+.|+.||.     |..||.
T Consensus       504 ~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp  545 (571)
T KOG4441|consen  504 TMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDP  545 (571)
T ss_pred             eEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCC
Confidence            444333333333333333  234 7888888774     555544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.39  E-value=0.35  Score=38.14  Aligned_cols=134  Identities=12%  Similarity=0.089  Sum_probs=84.0

Q ss_pred             ceeeeEECCCCCcEEEeecC---------CeEEEEEcccCCcCceee-cce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          170 YLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      ..++-..+|+|++..-.-.|         |.++.|-+.  ..+..+. .-. -+.++|+.+.+.+.++-+.+-.|.-||.
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            56777889999984332222         445555432  1222222 111 5678999888866677777778877874


Q ss_pred             ccC-C-----cceeEeeC---CCC-ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          239 RML-K-----APIQELPG---HTH-WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       239 ~~~-~-----~~~~~~~~---~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                      ..+ +     +.+..++.   ... ..-.++...+| .+.++.-..++|...|..+                   ++.+.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~t-------------------GK~L~  247 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTT-------------------GKILL  247 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCC-------------------CcEEE
Confidence            321 1     11222221   111 12345556677 7777777788999999998                   99999


Q ss_pred             eeccccceEEEEEeCCC
Q 018697          309 SYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~  325 (351)
                      +++-....|++++|--.
T Consensus       248 eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  248 EIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEcCCCceEEEEecCC
Confidence            99888888999999643

>PHA02713 hypothetical protein; Provisional

Probab=96.35  E-value=0.29  Score=45.26  Aligned_cols=143  Identities=7%  Similarity=0.011  Sum_probs=70.1

Q ss_pred             CCCcEEEeecC-----CeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecCCC------------------
Q 018697          179 HDVNAVAATCE-----SSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAADES------------------  231 (351)
Q Consensus       179 ~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg------------------  231 (351)
                      +++..+.|+.+     ..+..||..+.+  .+..+....  ...+++  ++. +++.|+.++                  
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCE-EEEEeCCCccccccccccccccccccc
Confidence            46666667654     357889987653  222222111  222222  455 777777542                  


Q ss_pred             -----eEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCC------eEEEEEcCCCCCCCCCCcccccCC
Q 018697          232 -----GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS------TVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       232 -----~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                           .+..||.++.. ..+..+....... +++ .-++ .+.+.|+.++      .+..||..+.              
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~--------------  490 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY--------------  490 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECC-EEEEEeCCCCCCccceeEEEecCCCC--------------
Confidence                 46778876411 1111111111111 122 2234 5666666542      3566776640              


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEeeeCC--eEEEeecCc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RVVVESVKP  346 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~v~vw~~~~  346 (351)
                        ..+..+..+.........+..  ++. +.+.||.|+  .+..||+.+
T Consensus       491 --~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        491 --NGWELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             --CCeeEccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCccc
Confidence              014444444433333333333  455 889999888  667777654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.25  E-value=0.11  Score=45.62  Aligned_cols=144  Identities=11%  Similarity=0.103  Sum_probs=92.9

Q ss_pred             CCCcEEE-eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc------EEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          179 HDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       179 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      +...|+. ++....++-.|++.|+.+....... + -+.|.|...+      --++|-++..|.-.|.|-.+..+...+.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            3344443 4456788888999998888877544 5 6778776431      1234677778888888765544443331


Q ss_pred             CCCceeEEEecCC---CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          251 HTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       251 ~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                       ...++.-.|+.-   ...++|.++..|-|++||.-.                   ...-..+++....|..+..+.+|.
T Consensus       557 -KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-------------------~rAKtalP~lG~aIk~idvta~Gk  616 (776)
T COG5167         557 -KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-------------------KRAKTALPGLGDAIKHIDVTANGK  616 (776)
T ss_pred             -hhccccccccccccccCceEEEecCCCceeeehhhc-------------------chhhhcCcccccceeeeEeecCCc
Confidence             222222223221   125999999999999999864                   333344566677899999999999


Q ss_pred             ceEEEeeeCCeEEEeecC
Q 018697          328 WIFASLSYDGRVVVESVK  345 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~  345 (351)
                      ++||+|-  ..+.+-|++
T Consensus       617 ~ilaTCk--~yllL~d~~  632 (776)
T COG5167         617 HILATCK--NYLLLTDVP  632 (776)
T ss_pred             EEEEeec--ceEEEEecc
Confidence            7777774  466666654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.33  Score=37.56  Aligned_cols=163  Identities=12%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      ..|++|++.         .++.+..-.-....+..=-...-+.++...+-.+|.-..+|.++.+........   +   .
T Consensus        68 S~ir~~~L~---------~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---G---e  132 (262)
T COG3823          68 SKIRVSDLT---------TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---G---E  132 (262)
T ss_pred             ceeEEEecc---------CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---C---c
Confidence            369999998         445444332222222222222234444555667888889998864444333221   1   3


Q ss_pred             eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec---ce----eEEEEcCCCCCcEEEEecCCCeEEEEeccc---
Q 018697          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AH----VRNVDYDTKKKHLLVTAADESGIHLWDLRM---  240 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---  240 (351)
                      -+.++  .++..|+.+....+++.-|.++-....++..   +.    ++.+.|- +|. +++--=.+..|...|..+   
T Consensus       133 GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         133 GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcE
Confidence            44443  4667788887778888888776554444331   11    3444443 332 333222222333333332   


Q ss_pred             --------CCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          241 --------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       241 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                              ....+..-..|..-.+.+++.|++.++++||-
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                    11112222345566789999999867777764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.98  E-value=1  Score=39.59  Aligned_cols=72  Identities=15%  Similarity=0.216  Sum_probs=50.4

Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC----CC---
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS----SR---  325 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~---  325 (351)
                      ..+.+++.+|.+ .+.++...-|.|.++|+..                   +..++.+++..+.  .+.|-    +.   
T Consensus       308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~-------------------~~vvrmWKGYRdA--qc~wi~~~~~~~~~  365 (415)
T PF14655_consen  308 REGESICLSPSG-RLAAVTDSLGRVLLIDVAR-------------------GIVVRMWKGYRDA--QCGWIEVPEEGDRD  365 (415)
T ss_pred             ceEEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------ChhhhhhccCccc--eEEEEEeecccccc
Confidence            457889999998 8999988889999999998                   7777777765432  11111    00   


Q ss_pred             -------------CCceEEEeeeCCeEEEeecCc
Q 018697          326 -------------EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       326 -------------~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                   ...+++-+-.-|.|.||.++.
T Consensus       366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~  399 (415)
T PF14655_consen  366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQ  399 (415)
T ss_pred             cccccccCCCCcceEEEEEEeccCCeEEEEecCC
Confidence                         122344555688899999865

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=1.6  Score=40.68  Aligned_cols=177  Identities=8%  Similarity=0.053  Sum_probs=87.9

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      ..|+|+++.          ++.+..+.-...++-.+.|+.+..  ++.-..+|++.+|++.... .... ..........
T Consensus        64 ~~I~If~~s----------G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~-ie~~-svg~e~~~~~  129 (829)
T KOG2280|consen   64 PYIRIFNIS----------GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEF-IESN-SVGFESQMSD  129 (829)
T ss_pred             eeEEEEecc----------ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhh-hccc-ccccccccCc
Confidence            458888875          455544433444888999999988  6666789999999997422 1111 1111111123


Q ss_pred             eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ce----eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCc
Q 018697          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH----VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~----v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      |..+.+..+|  +++-..+|.+.+-.-.........+. +.    -.|-...+++.  ..++--...--..++.......
T Consensus       130 I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~  207 (829)
T KOG2280|consen  130 IVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV  207 (829)
T ss_pred             eeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc
Confidence            4444444444  33333345454432221112222221 11    12222222211  1111111000111222222111


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ....+....+.+..+..||.. .+|+--..+|.|.+-++..
T Consensus       208 q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  208 QLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             cccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecch
Confidence            222333223567788899998 9999999999988887776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.71  E-value=0.59  Score=43.21  Aligned_cols=115  Identities=15%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEe--cCCCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCC--NPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  289 (351)
                      -+.-+.-++ ..++.+....+.|||.+. .....+-. .....|..+.|  .|++ ..+++.|....|.++--.......
T Consensus        34 li~gss~~k-~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   34 LISGSSIKK-IAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             eEeecccCc-EEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhc
Confidence            333344454 455555566899999986 43222211 34688999998  4778 777777888888888543210000


Q ss_pred             CCCcccccCCcccccccceee--cccc-ceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          290 LPSESLVESPNQRANSLLNSY--SDYE-DSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                             ..   ....++..+  ..|+ .+|.+..|.++|. +++++  ++.+.|++
T Consensus       111 -------~~---p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  111 -------KG---PSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFD  154 (631)
T ss_pred             -------CC---cccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEEC
Confidence                   00   013333333  2233 5789999999987 44433  35677775

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.47  E-value=0.63  Score=40.60  Aligned_cols=143  Identities=11%  Similarity=0.081  Sum_probs=74.5

Q ss_pred             cceeEEEecCCCCCcEEEEe-----------cCC-cEEEEEcCCCC-CCc--ccccccccCcccceeeeEECCCCCcEEE
Q 018697          121 GKINCVLWWSSGRHDKLVSI-----------DEE-NIFLWSLDCSN-KNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~-----------~d~-~v~iwd~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (351)
                      .....|+|.++|+ ++++..           ..+ .|.+++-.++. ...  .++...    ......+++.+++  |++
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV   86 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE
Confidence            3456789999998 234332           122 67777654322 211  122211    2256788998877  555


Q ss_pred             eecCCeEEEEEcccC-----Cc--C-ceeec-----ce-eEEEEcCCCCCcEEEEecCC-------------------Ce
Q 018697          186 ATCESSVQFWDLRSM-----GK--T-NSIEH-----AH-VRNVDYDTKKKHLLVTAADE-------------------SG  232 (351)
Q Consensus       186 ~~~d~~i~iwd~~~~-----~~--~-~~~~~-----~~-v~~~~~~~~~~~~l~~~~~d-------------------g~  232 (351)
                      +......++.|....     +.  + ..+..     .| ...++|.|+|. +.++-+..                   |.
T Consensus        87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCce
Confidence            554443334354321     11  1 11221     23 78899999997 44433311                   34


Q ss_pred             EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      |.-++...  ..+..+..--.....++|+|+| .++++-..+
T Consensus       166 i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~  204 (367)
T TIGR02604       166 LFRYNPDG--GKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDD  204 (367)
T ss_pred             EEEEecCC--CeEEEEecCcCCCccceECCCC-CEEEEccCC
Confidence            45555442  2233333223445789999998 777664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.35  E-value=1.3  Score=36.37  Aligned_cols=146  Identities=10%  Similarity=0.053  Sum_probs=83.9

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE-cccC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD-LRSM  200 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~  200 (351)
                      .+.+.++++++..+.++...++.-.+|-...+..........      .+..-.|++++...++...+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~------~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG------SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC------ccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            688899999999544444234444444444333333333211      677779999977666656566666663 2333


Q ss_pred             CcC-ceee---cc-eeEEEEcCCCCCcEEEEe--cCCCeEEEEecccC--C------cceeEeeCCCCceeEEEecCCCC
Q 018697          201 GKT-NSIE---HA-HVRNVDYDTKKKHLLVTA--ADESGIHLWDLRML--K------APIQELPGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       201 ~~~-~~~~---~~-~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~--~------~~~~~~~~~~~~v~~~~~~~~~~  265 (351)
                      ... ....   .. .|..+.++|||..+.+..  ..++.|.+--+...  +      .++.........+..+.|.+++ 
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-  177 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-  177 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-
Confidence            221 1111   11 399999999999544444  23467776654321  1      1222222335678999999998 


Q ss_pred             CeEEEeeCC
Q 018697          266 GFILSAGTD  274 (351)
Q Consensus       266 ~~l~s~~~d  274 (351)
                      .+++.+...
T Consensus       178 ~L~V~~~~~  186 (253)
T PF10647_consen  178 TLVVLGRSA  186 (253)
T ss_pred             EEEEEeCCC
Confidence            666555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.30  E-value=1.4  Score=36.50  Aligned_cols=206  Identities=15%  Similarity=0.157  Sum_probs=112.5

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-----cccceeEEEecCCCC--------
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWSSGR--------  133 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~--------  133 (351)
                      .-+.|+++|.+..-++-    ...+...+||.......- . ....+.++..     .....+.+.|+....        
T Consensus        24 N~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g-~-~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPL-V-QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             ccceeEecCCCCEEEec----CCcceEEeecCCcccccC-C-ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            45789999988776663    566789999986211000 0 1112223321     134567777764332        


Q ss_pred             ---CcEEEEecCCcEEEEEcCCCCC---Cccc-ccccccCcccceeeeEECC--CCCcEEEee-cCCeEEEEEcccCCcC
Q 018697          134 ---HDKLVSIDEENIFLWSLDCSNK---NAQV-QSKQSSGMLHYLSGGAWDP--HDVNAVAAT-CESSVQFWDLRSMGKT  203 (351)
Q Consensus       134 ---~~~~~~~~d~~v~iwd~~~~~~---~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~i~iwd~~~~~~~  203 (351)
                         ..++.+++||+|.-|...-...   ...+ ......+  .--..+++..  .+.+|+++. ..++|.++|-.-.+..
T Consensus        98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118        98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence               1256678899999998653222   1111 1111111  1233445443  356666664 6789999985533211


Q ss_pred             --ceeecc-----e----e---------EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CCCceeEEEec
Q 018697          204 --NSIEHA-----H----V---------RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCN  261 (351)
Q Consensus       204 --~~~~~~-----~----v---------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~  261 (351)
                        ..+..+     .    |         .-..-.++.. -=+.|..-|.|-+||+.  ++.++++..  .-..-+.|+..
T Consensus       176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~A  252 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIA  252 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeC
Confidence              111111     1    2         1122223322 12334455789999987  667777742  22334667765


Q ss_pred             C------CCCCeEEEeeCCCeEEEEEcCC
Q 018697          262 P------EYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       262 ~------~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      |      .+ .+|+---.||+|..||..+
T Consensus       253 Pa~FG~~sg-~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       253 PESFGSLSG-ALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             hhhhCCCCC-CeEEeecCCceeEEecCCC
Confidence            5      33 6777666799999999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.27  E-value=1.8  Score=37.50  Aligned_cols=150  Identities=11%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             CCcEEEeecCCeEEEEEcccCCcCceeecce------eEEEEcCCCCCc--EEEEecCC---CeEEEEecccCCcceeEe
Q 018697          180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTKKKH--LLVTAADE---SGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~~~~~~~  248 (351)
                      ...++....++-+.+||+. |+.+..+..+.      ...+.+.  ++.  ++++...+   .+|++|.+......+..+
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            3456666678899999998 45555555444      3333342  332  23333332   479999886423334443


Q ss_pred             eCC-------CCceeEEEe--cC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018697          249 PGH-------THWTWAVCC--NP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (351)
Q Consensus       249 ~~~-------~~~v~~~~~--~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (351)
                      ...       ...+..+|+  +| +|..+++....+|.+..|.+.......            ...++++.|...+ .+-
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~------------v~~~lVR~f~~~s-Q~E  211 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK------------VSATLVREFKVGS-QPE  211 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS------------EEEEEEEEEE-SS--EE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc------------EeeEEEEEecCCC-cce
Confidence            321       123567776  33 454577788889999888876311100            0145667775533 477


Q ss_pred             EEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          319 GLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+....... .|..+-++.-|.-|+.++
T Consensus       212 GCVVDDe~g-~LYvgEE~~GIW~y~Aep  238 (381)
T PF02333_consen  212 GCVVDDETG-RLYVGEEDVGIWRYDAEP  238 (381)
T ss_dssp             EEEEETTTT-EEEEEETTTEEEEEESSC
T ss_pred             EEEEecccC-CEEEecCccEEEEEecCC
Confidence            777776655 677777776666665543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PHA02713 hypothetical protein; Provisional

Probab=95.25  E-value=0.76  Score=42.56  Aligned_cols=89  Identities=11%  Similarity=-0.016  Sum_probs=46.5

Q ss_pred             eEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEeccc-C-CcceeEeeCCCCceeEEE
Q 018697          191 SVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM-L-KAPIQELPGHTHWTWAVC  259 (351)
Q Consensus       191 ~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~v~~~~  259 (351)
                      .+..||.++.+-  +..+..+. -.+++. -++. +.+.|+.+      ..+..||.++ . -..+..+.........+.
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            477788776532  22222222 112222 2354 67777654      2467888875 1 122233332222222233


Q ss_pred             ecCCCCCeEEEeeCCC--eEEEEEcCC
Q 018697          260 CNPEYDGFILSAGTDS--TVNLWLVST  284 (351)
Q Consensus       260 ~~~~~~~~l~s~~~dg--~i~iwd~~~  284 (351)
                      +  ++ .+.++|+.|+  .+..||..+
T Consensus       511 ~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        511 H--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             E--CC-EEEEEeeecceeehhhcCccc
Confidence            2  45 8888999888  677777776

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.14  Score=49.30  Aligned_cols=149  Identities=9%  Similarity=-0.000  Sum_probs=90.1

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee---eeeccccceeEEEecCCCCCcEEEEecC
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA---ALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      -.|..+...+|+...++..  .+.+-.|..||+.+....... +..++.   +......-..++.|+|.-....++...|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~--tsng~~v~~fD~~~fs~s~~~-~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d  177 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVS--TSNGEAVYSFDLEEFSESRYE-TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD  177 (1405)
T ss_pred             ccceEEEeccCCceEEEEE--ecCCceEEEEehHhhhhhhhh-hccccccccchhccccccccccccCCccchhhhhccc
Confidence            4556666677765555443  344557889999743221110 111111   1112233457889999876545666789


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce-eEEEEc
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH-VRNVDY  216 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~-v~~~~~  216 (351)
                      +.|++..+.........     .......++++|+|.|+.+++|-..|++.-|-..- +....+..     .. |.+|.|
T Consensus       178 lsl~V~~~~~~~~~v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             cchhhhhhhhhhhhhcc-----cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEE
Confidence            99998877632222111     12234789999999999999999999998886542 22222221     12 999999


Q ss_pred             CCCCCcE
Q 018697          217 DTKKKHL  223 (351)
Q Consensus       217 ~~~~~~~  223 (351)
                      -....++
T Consensus       252 l~t~efl  258 (1405)
T KOG3630|consen  252 LSTQEFL  258 (1405)
T ss_pred             ecceeEE
Confidence            8777633

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.10  E-value=1.7  Score=36.47  Aligned_cols=157  Identities=6%  Similarity=-0.034  Sum_probs=72.6

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ...-.+.+..+..+++++++++.    ..-..+.-|+-..       ....+.  -+....+|..+.|.|++.  +....
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs----~~G~~~~s~~~G~-------~~w~~~--~r~~~~riq~~gf~~~~~--lw~~~  204 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVS----SRGNFYSSWDPGQ-------TTWQPH--NRNSSRRIQSMGFSPDGN--LWMLA  204 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEE----TTSSEEEEE-TT--------SS-EEE--E--SSS-EEEEEE-TTS---EEEEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEE----CcccEEEEecCCC-------ccceEE--ccCccceehhceecCCCC--EEEEe
Confidence            34445778888889999877774    3444456777441       122322  223467899999999987  44445


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ceeEEEE
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AHVRNVD  215 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~v~~~~  215 (351)
                      ..|.|+.=+.................-...+.+++|.+++...+ ++..|.+ +.....++.=..-..     ..+..+.
T Consensus       205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred             CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccE-EEeCCCCccceECccccCCCCceEEEE
Confidence            77888887722111111000000001112578999998766555 4445544 344455543222221     1177888


Q ss_pred             cCCCCCcEEEEecCCCeEEEE
Q 018697          216 YDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~  236 (351)
                      |.+..+ -++ -+++|.|.-|
T Consensus       283 f~~~~~-gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  283 FVNPDK-GFV-LGQDGVLLRY  301 (302)
T ss_dssp             EEETTE-EEE-E-STTEEEEE
T ss_pred             EcCCCc-eEE-ECCCcEEEEe
Confidence            866554 455 4566776554

>PRK10115 protease 2; Provisional

Probab=95.07  E-value=3.3  Score=39.53  Aligned_cols=247  Identities=9%  Similarity=-0.006  Sum_probs=117.0

Q ss_pred             EeeeecCCCCcceEEEeeeeeCC-CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeec--CCcceEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST--GESYGAA   94 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~--~~d~~i~   94 (351)
                      .+.....++++..++++.-..+. ...+++.++...  ..+...+.+   .-..++|.++++.|+.+....  .....|.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            45555667777777777544333 345666666532  211111111   114689999998887765321  1224677


Q ss_pred             EEEcccccCCCCCCcceeeeeeecccccee-EEEecCCCCCcEEEE--ecCCcEEEEEcCCCC-CCcccccccccCcccc
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKIN-CVLWWSSGRHDKLVS--IDEENIFLWSLDCSN-KNAQVQSKQSSGMLHY  170 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~  170 (351)
                      .+++.+       +..+....+........ .+..+.+++++++.+  ..++.+.+++..... ......... .+   .
T Consensus       203 ~h~lgt-------~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~  271 (686)
T PRK10115        203 RHTIGT-------PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KD---H  271 (686)
T ss_pred             EEECCC-------ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CC---C
Confidence            777762       11122223333223333 333344777655544  235788999854321 111122111 11   1


Q ss_pred             eeeeEECCCCCcEEEeec----CCeEEEEEccc-CCcCceeec-ce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          171 LSGGAWDPHDVNAVAATC----ESSVQFWDLRS-MGKTNSIEH-AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~-~~~~~~~~~-~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      ...+. +. +..++..+.    ...|...++.. ++....+.. ..  +..+.+..  ++++++...++.-+++-+....
T Consensus       272 ~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~~~  347 (686)
T PRK10115        272 EYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINRKT  347 (686)
T ss_pred             EEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcCCC
Confidence            22222 22 233443332    22344445542 221222222 11  77777763  3478888888876665554323


Q ss_pred             cceeEee-CCCCceeEEEec--CCCCCeEEEeeC---CCeEEEEEcCC
Q 018697          243 APIQELP-GHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVST  284 (351)
Q Consensus       243 ~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~  284 (351)
                      ..+..+. .....+..+.++  +++..++++.+.   -+.+..+|..+
T Consensus       348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~  395 (686)
T PRK10115        348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT  395 (686)
T ss_pred             CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence            3344443 222223333344  444245544433   44677777765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.06  E-value=0.62  Score=43.07  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             eEECCCCCcEEEeecCCeEEEEEcccCCcCceeec--ce-eEEEEc--CCCCCcEEEEecCCCeEEEEecccCC------
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDY--DTKKKHLLVTAADESGIHLWDLRMLK------  242 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~-v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~------  242 (351)
                      +.-+.-++..++-+....+.|||.+.+........  .. |.++.|  .|+++.+++ -+....|.+|--....      
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLa-VGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILA-VGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEE-EEcCcEEEEEEccchhhhcCCc
Confidence            33344344444444567899999998764333322  22 899988  478885555 4455677777542111      


Q ss_pred             --cceeEe--eCCC-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          243 --APIQEL--PGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       243 --~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                        .+++.+  ..|+ .+|.+..|.++| .+++.+  ++.+.|+|-..
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCC-eEEEEe--CCEEEEECCCc
Confidence              133333  2344 689999999999 555443  34688887654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.04  E-value=1.7  Score=37.87  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             ceeeeEECCCCCcEEEee-----------cCC-eEEEEEcccC--Cc--Cceeecce--eEEEEcCCCCCcEEEEecCCC
Q 018697          170 YLSGGAWDPHDVNAVAAT-----------CES-SVQFWDLRSM--GK--TNSIEHAH--VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~--~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg  231 (351)
                      ....++|.++|+.+++-.           ..+ .|.+++-..+  +.  ...+...-  ...+++.+++  ++++ ....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPPD   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCCe
Confidence            567788998888665532           123 6767664432  21  12222111  7889998887  4553 3433


Q ss_pred             eEEEEecccCC----c---ceeEeeC----CCCceeEEEecCCCCCeEEEee
Q 018697          232 GIHLWDLRMLK----A---PIQELPG----HTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       232 ~i~i~d~~~~~----~---~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      ..++.|.....    +   .+..+..    +......++|.|+| .+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence            33343543211    1   1112222    23457789999999 5555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.03  E-value=0.96  Score=42.92  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEccc----------CCcC---ceee-------cc-e--eEEEEcCCCC--CcE
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRS----------MGKT---NSIE-------HA-H--VRNVDYDTKK--KHL  223 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------~~~~---~~~~-------~~-~--v~~~~~~~~~--~~~  223 (351)
                      -.|..+..+|+|..++..|..| |.|..+..          ++..   +++.       .. .  |..+.|+|.+  ...
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688899999999998888765 44444421          1110   1111       01 1  8899999985  236


Q ss_pred             EEEecCCCeEEEEecccCCcceeEee
Q 018697          224 LVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      |++-.+|+++|+||+.....+.+.+.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEE
Confidence            77888999999999987665555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=1.5  Score=38.28  Aligned_cols=152  Identities=9%  Similarity=0.079  Sum_probs=88.7

Q ss_pred             EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018697          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  204 (351)
                      .+-|...++ .+++. ..|.+.-|-....+....  ........++|.++.|++|.+.+++--.+++|.+++....+...
T Consensus        27 gvFfDDaNk-qlfav-rSggatgvvvkgpndDVp--iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   27 GVFFDDANK-QLFAV-RSGGATGVVVKGPNDDVP--ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ceeeccCcc-eEEEE-ecCCeeEEEEeCCCCCCC--ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            344444444 23333 345666676654332111  11111223489999999999999998899999999875433322


Q ss_pred             eee----cce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeE
Q 018697          205 SIE----HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTV  277 (351)
Q Consensus       205 ~~~----~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i  277 (351)
                      ...    .+.  |....|..... +.+ -.. .-+.+|......+.++..+.|.-.|+=-.|.++-.-.|++.+ ..+++
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e-~A~-i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTE-IAF-ITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCee-EEE-Eec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence            222    111  88899987754 333 333 246677665556667777788888888888888723333333 33344


Q ss_pred             EEEEcC
Q 018697          278 NLWLVS  283 (351)
Q Consensus       278 ~iwd~~  283 (351)
                      .=+-++
T Consensus       180 npf~~~  185 (657)
T KOG2377|consen  180 NPFHFR  185 (657)
T ss_pred             ccEEEe
Confidence            334333

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.90  E-value=0.74  Score=40.74  Aligned_cols=96  Identities=20%  Similarity=0.145  Sum_probs=60.9

Q ss_pred             EEeecCCeEEEEEcccCC-cCceeecce------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCcee
Q 018697          184 VAATCESSVQFWDLRSMG-KTNSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW  256 (351)
Q Consensus       184 ~~~~~d~~i~iwd~~~~~-~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  256 (351)
                      ++|-.+..|.-.|.+... .+...+...      ..+..-...|  +++.++..|.|++||.-. .+.-..+.+....|.
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk  607 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIK  607 (776)
T ss_pred             EEeecccceEEecccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCccccccee
Confidence            444456666666766432 222222111      4555555555  689999999999999643 444455667778899


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          257 AVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+..+.+| .++++.+ ...+.+-|++-
T Consensus       608 ~idvta~G-k~ilaTC-k~yllL~d~~i  633 (776)
T COG5167         608 HIDVTANG-KHILATC-KNYLLLTDVPI  633 (776)
T ss_pred             eeEeecCC-cEEEEee-cceEEEEeccc
Confidence            99999999 5444433 34677777765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.87  E-value=3.1  Score=38.27  Aligned_cols=71  Identities=18%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             eEECCCCCcEEEeecC-----C-----------eEEEEEcccCCcCceeecce-----------eEEEEcCCCCC--cEE
Q 018697          174 GAWDPHDVNAVAATCE-----S-----------SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLL  224 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l  224 (351)
                      +++.|+...++.+..+     +           .|.-.|+++++....++..+           ..-+.+..+|+  .++
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v  318 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL  318 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence            3666666666665421     2           67778999999887776432           12222333554  478


Q ss_pred             EEecCCCeEEEEecccCCcce
Q 018697          225 VTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      +.+..+|.+++.|.++ ++++
T Consensus       319 ~~~~K~G~~~vlDr~t-G~~i  338 (527)
T TIGR03075       319 AHADRNGFFYVLDRTN-GKLL  338 (527)
T ss_pred             EEeCCCceEEEEECCC-Ccee
Confidence            8899999999999887 5554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.84  E-value=0.089  Score=49.33  Aligned_cols=183  Identities=8%  Similarity=0.143  Sum_probs=97.6

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC--CCCCcccccccccC
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC--SNKNAQVQSKQSSG  166 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~  166 (351)
                      -.+.+++-+...        ..+....+++..+.|..+.|.....-.+.  -.-|.+.||+++-  ++....+.......
T Consensus       109 ~~~~vrvaN~~~--------sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p  178 (1283)
T KOG1916|consen  109 MENGVRVANQEP--------SMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP  178 (1283)
T ss_pred             hhhhhhhccCcc--------hhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc
Confidence            445566666541        22222345677788888888543211111  2347889999873  22222222111111


Q ss_pred             cccceeeeEECC---CCCcEEEeecCCeEEEEEcccCCcCceeecce--------------eEEEEcCCCCCcEEEEecC
Q 018697          167 MLHYLSGGAWDP---HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--------------VRNVDYDTKKKHLLVTAAD  229 (351)
Q Consensus       167 ~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~~  229 (351)
                      ....+.-+.|.|   +..++..+-.++.+++....+... ..+. +|              +.--.++|||. .++.++.
T Consensus       179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~  255 (1283)
T KOG1916|consen  179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAIS  255 (1283)
T ss_pred             CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCc-EEEEeec
Confidence            112334455554   444555556778888766554321 1111 12              22223799998 8999999


Q ss_pred             CCeEEEEecccCC----cceeEeeCCC-CceeEEEecCCC------C--CeEEEee-CCCeEEEEEcCC
Q 018697          230 ESGIHLWDLRMLK----APIQELPGHT-HWTWAVCCNPEY------D--GFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       230 dg~i~i~d~~~~~----~~~~~~~~~~-~~v~~~~~~~~~------~--~~l~s~~-~dg~i~iwd~~~  284 (351)
                      ||.+++|.+.-.+    ++++..+.|. .+-.|..|+...      +  .++++++ .+..+++|....
T Consensus       256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             CCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence            9998888765433    3566667776 443343343321      0  2344444 355788998877

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.61  E-value=0.17  Score=28.09  Aligned_cols=32  Identities=6%  Similarity=0.106  Sum_probs=25.0

Q ss_pred             cceeEEEecCCCC--CcEEEEecCCcEEEEEcCC
Q 018697          121 GKINCVLWWSSGR--HDKLVSIDEENIFLWSLDC  152 (351)
Q Consensus       121 ~~v~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~  152 (351)
                      +.|.++.|+|...  .+++.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998654  5566666679999999984

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.30  E-value=5.5  Score=38.55  Aligned_cols=179  Identities=10%  Similarity=0.077  Sum_probs=101.5

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----------C---CeEEEEEcccCC
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------E---SSVQFWDLRSMG  201 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~iwd~~~~~  201 (351)
                      .++....+.+++..++.-++..... ..   .......+++.+....+.+.+.           .   ..++++|-++-+
T Consensus       686 ~l~~~~~~~l~i~tid~iqkl~irt-vp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEIQKLHIRT-VP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             eEEEecCCceEEEEecchhhcceee-ec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence            4555566788888877533221111 11   1124556666653333333321           1   246677766655


Q ss_pred             cCceeecce------eEEEEcCCCCCcEEEEec----------CCCeEEEEecccCCcceeEeeCC--CCceeEEEecCC
Q 018697          202 KTNSIEHAH------VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPE  263 (351)
Q Consensus       202 ~~~~~~~~~------v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~  263 (351)
                      .....+...      +.++.|..|...++++|.          ..|.|.+|.+.. .+.++....+  .+.+.++..- +
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~f-n  839 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVEF-N  839 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhhh-C
Confidence            443333221      666778877433666665          258899998876 3444444322  2344444322 3


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      | +++|.-  ...|++|+...                   .+.++.-..+..++..+...-.+. .++.|.-=+++.+-.
T Consensus       840 g-kllA~I--n~~vrLye~t~-------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  840 G-KLLAGI--NQSVRLYEWTT-------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQ  896 (1096)
T ss_pred             C-eEEEec--CcEEEEEEccc-------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEE
Confidence            3 555543  45799999987                   556666666777788888777777 677776556555543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.24  E-value=4.6  Score=38.06  Aligned_cols=116  Identities=9%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             eEEEEcCCC-CCcEEEEecCCCeEEEEecccCC-------------------cceeEeeCCCCceeEEEec--CCCCCeE
Q 018697          211 VRNVDYDTK-KKHLLVTAADESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCN--PEYDGFI  268 (351)
Q Consensus       211 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~--~~~~~~l  268 (351)
                      |+.+....- +..+|+.+.+||.|.+|.++..-                   +|...+. -...+++++++  ... ++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence            444444322 23478889999999999763210                   1222222 23467899998  666 899


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC--C---ceEEEeeeCCeEEEee
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE--P---WIFASLSYDGRVVVES  343 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~l~s~~~dg~v~vw~  343 (351)
                      |.++....|.||-......+               ....... .|...|-+|+|-++.  .   ..+++++-.|.+.+|+
T Consensus       181 AVSsNs~~VTVFaf~l~~~r---------------~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDER---------------FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEecCCceEEEEEEeccccc---------------ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            99888888998877651000               0000011 245568888887644  1   2677888899999988


Q ss_pred             c
Q 018697          344 V  344 (351)
Q Consensus       344 ~  344 (351)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            7

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.22  E-value=3.4  Score=35.85  Aligned_cols=200  Identities=11%  Similarity=0.088  Sum_probs=101.4

Q ss_pred             cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC----CCCCc--eEEEEeecCC--cceEEEEEcc
Q 018697           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC----PFDQR--IFSTVFSTGE--SYGAAIWQIP   99 (351)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~----~~~~~--l~~~~~~~~~--d~~i~vw~~~   99 (351)
                      ...+++||.   .++-+.++++...  .+.  .+.  .+.++.+..-    -.++.  |+++.  .-.  ...|++|.+.
T Consensus        67 ~kSlIigTd---K~~GL~VYdL~Gk--~lq--~~~--~Gr~NNVDvrygf~l~g~~vDlavas--~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   67 AKSLIIGTD---KKGGLYVYDLDGK--ELQ--SLP--VGRPNNVDVRYGFPLNGKTVDLAVAS--DRSDGRNSLRLFRID  135 (381)
T ss_dssp             GG-EEEEEE---TTTEEEEEETTS---EEE--EE---SS-EEEEEEEEEEEETTEEEEEEEEE--E-CCCT-EEEEEEEE
T ss_pred             ccceEEEEe---CCCCEEEEcCCCc--EEE--eec--CCCcceeeeecceecCCceEEEEEEe--cCcCCCCeEEEEEec
Confidence            455677764   3466777776653  222  111  1233333221    12333  44442  112  2579999987


Q ss_pred             cccCCCCCCcceeeeeee-------ccccceeEEEe--cC-CCCCcEEEEecCCcEEEEEcCCCCC--C-cccccccccC
Q 018697          100 ELYGQLNSPQLERIAALD-------AHVGKINCVLW--WS-SGRHDKLVSIDEENIFLWSLDCSNK--N-AQVQSKQSSG  166 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~--~~-~~~~~~~~~~~d~~v~iwd~~~~~~--~-~~~~~~~~~~  166 (351)
                      ..       +. .+..+.       .....+..+|+  ++ ++...+++...+|.+.-|.+.....  . .......  .
T Consensus       136 ~~-------~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~  205 (381)
T PF02333_consen  136 PD-------TG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--K  205 (381)
T ss_dssp             TT-------TT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E
T ss_pred             CC-------CC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--c
Confidence            21       11 122221       11234666665  44 3554455567889999888863221  1 1111111  1


Q ss_pred             cccceeeeEECCCCCcEEEeecCCeEEEEEcccCC--cCcee---ecce----eEEEEcC--CCC-CcEEEEecCCCeEE
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSI---EHAH----VRNVDYD--TKK-KHLLVTAADESGIH  234 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~---~~~~----v~~~~~~--~~~-~~~l~~~~~dg~i~  234 (351)
                      ....+..+........|+.+-.+.-|.-|+.+...  ....+   ...+    +..|++-  +++ .|++++.-.+++..
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~  285 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA  285 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred             CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence            12268888888888889999989888888876322  11111   1112    6666663  333 36777777888999


Q ss_pred             EEecccCCcceeEe
Q 018697          235 LWDLRMLKAPIQEL  248 (351)
Q Consensus       235 i~d~~~~~~~~~~~  248 (351)
                      +|+.+.+...+..|
T Consensus       286 Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  286 VYDREGPNAYVGSF  299 (381)
T ss_dssp             EEESSTT--EEEEE
T ss_pred             EEecCCCCcccceE
Confidence            99987544444444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.15  E-value=2.9  Score=34.75  Aligned_cols=199  Identities=10%  Similarity=0.058  Sum_probs=108.0

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCC-----CCCcccccc--cccCcccceeeeEECCCCC------------c
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNAQVQSK--QSSGMLHYLSGGAWDPHDV------------N  182 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~--~~~~~~~~v~~~~~~~~~~------------~  182 (351)
                      .-+.|+++|.+. +.++....+...+||.+..     .+...+...  .........+.+.|+....            .
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            357899999887 3555555688999998721     111111111  0000122566777764322            2


Q ss_pred             EEEeecCCeEEEEEcccCCc---C--ceeecc---e-eEEEEcC--CCCCcEEEEecCCCeEEEEecccCCcceeEeeCC
Q 018697          183 AVAATCESSVQFWDLRSMGK---T--NSIEHA---H-VRNVDYD--TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH  251 (351)
Q Consensus       183 l~~~~~d~~i~iwd~~~~~~---~--~~~~~~---~-v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  251 (351)
                      ++.+++||+|.-|...-...   .  ..+...   . -..+++.  ..+.++.++--.+++|.+||-.- . ++..-...
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~-~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-R-PPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-c-cccCCCCc
Confidence            56778899999998643322   1  112211   1 3344443  33555666666789999999653 2 11110011


Q ss_pred             CCc-------------------eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-
Q 018697          252 THW-------------------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-  311 (351)
Q Consensus       252 ~~~-------------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  311 (351)
                      ..+                   |+-..-.++. +.=+.|..-|.|-+||..                    +.+++.+. 
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~--------------------G~l~~r~as  239 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLN--------------------GQLLRRVAS  239 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCC--------------------CcEEEEecc
Confidence            111                   1111122222 222334445677788776                    56676663 


Q ss_pred             -cccceEEEEEeCC------CCCceEEEeeeCCeEEEeecC
Q 018697          312 -DYEDSVYGLAWSS------REPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       312 -~~~~~v~~~~~~~------~~~~~l~s~~~dg~v~vw~~~  345 (351)
                       +.-...+.|+..|      .+. +|+.--.||+|..+|..
T Consensus       240 ~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       240 SGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             CCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence             2234457777755      455 66666679999999975

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.07  E-value=0.21  Score=27.72  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             eEEEEEeCCCCC--ceEEEeeeCCeEEEeecC-ccc
Q 018697          316 SVYGLAWSSREP--WIFASLSYDGRVVVESVK-PFL  348 (351)
Q Consensus       316 ~v~~~~~~~~~~--~~l~s~~~dg~v~vw~~~-~~~  348 (351)
                      .|+++.|+|...  .+|+-+-.-+.|.|+|++ .+.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~   37 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM   37 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence            588999997543  488888889999999998 444

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.97  E-value=4.2  Score=35.98  Aligned_cols=167  Identities=7%  Similarity=0.070  Sum_probs=87.7

Q ss_pred             eEeeeecCC-CCcceEEEeeeeeCCCCEEEEEEeCCCCCeEE-EEeeecCCcceeeeeeC---CC-CCceEEEEeecCCc
Q 018697           17 RCISDVKAD-TDHTSFLTGTLSLKEENEVHLLRLSSGGTELI-CEGLFSHPNEIWDLSSC---PF-DQRIFSTVFSTGES   90 (351)
Q Consensus        17 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~h~~~v~~i~~~---~~-~~~l~~~~~~~~~d   90 (351)
                      -.+..+..+ .+..++++|+    ..|.+++++-...+.... ...-..-..+|..+..-   +. ....+++.    .-
T Consensus        25 l~v~~~~~~~~~~d~IivGS----~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL----hP   96 (418)
T PF14727_consen   25 LCVGNLDNSPSGSDKIIVGS----YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL----HP   96 (418)
T ss_pred             EEEEcccCCCCCccEEEEec----cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe----cC
Confidence            334444432 3557888886    468888887654332111 11112234678777653   22 22333332    66


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccc--cceeEEEecCC----CCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHV--GKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                      ..+.||.+....+....+..-.+..+..|.  .....++.-|-    ++..+.+-+.||.+.+|+-+...- ...+... 
T Consensus        97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~~-  174 (418)
T PF14727_consen   97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPDF-  174 (418)
T ss_pred             CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCCC-
Confidence            789999986432222222222222333332  23333444332    234455558999999999774211 1111111 


Q ss_pred             cCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                          --...+.+.+..+.+++++.+..+.-|..
T Consensus       175 ----llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  175 ----LLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ----CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence                12334677788888888888888887764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.89  E-value=1.8  Score=37.92  Aligned_cols=101  Identities=11%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce----eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  286 (351)
                      |.++.|++|.+ .+++--.+.+|.+++... .++.    .+-+.....|....|+..-  -+|.-...| +.+|-...  
T Consensus        69 I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~-d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~p--  141 (657)
T KOG2377|consen   69 IKSIKFSLDNK-ILAVQRTSKTVDFCNFIP-DNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVLP--  141 (657)
T ss_pred             eeEEEeccCcc-eEEEEecCceEEEEecCC-CchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEch--
Confidence            99999999998 899999999999999843 2222    2223334568888998753  445444443 66776654  


Q ss_pred             CCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                                      ....++..+.|...|+-..|.++-.-.+.+.+
T Consensus       142 ----------------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  142 ----------------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             ----------------hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence                            14556666777878888889998774444444

>PHA03098 kelch-like protein; Provisional

Probab=93.80  E-value=3  Score=38.55  Aligned_cols=60  Identities=10%  Similarity=0.061  Sum_probs=31.0

Q ss_pred             CCCcEEEeecC-----CeEEEEEcccCCcC--ceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEeccc
Q 018697          179 HDVNAVAATCE-----SSVQFWDLRSMGKT--NSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM  240 (351)
Q Consensus       179 ~~~~l~~~~~d-----~~i~iwd~~~~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  240 (351)
                      ++..++.|+.+     ..+..||..+.+-.  ..+..+. -.+++. -++. +++.|+.+      ..+..||..+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCC
Confidence            45666666644     35777887765421  1111112 112222 2444 67777632      4588888764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=1.4  Score=39.30  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=51.3

Q ss_pred             ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc-ccCCc-ccccccceeeccccceEEEEEeCCCC--Cce
Q 018697          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL-VESPN-QRANSLLNSYSDYEDSVYGLAWSSRE--PWI  329 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~  329 (351)
                      .|..+..++.| ..++-.|.+|.+.++-.+..++........ ...+. -.-+..+.+-..| -.+..++|+|+.  ...
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence            46778889999 788888888866555433222111100000 00000 0001222222222 246788999976  336


Q ss_pred             EEEeeeCCeEEEeecCcc
Q 018697          330 FASLSYDGRVVVESVKPF  347 (351)
Q Consensus       330 l~s~~~dg~v~vw~~~~~  347 (351)
                      +..-+.|+.||+|++.+.
T Consensus       183 L~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEEecCcEEEEEecCCc
Confidence            777788999999998763

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.52  E-value=3.3  Score=39.51  Aligned_cols=90  Identities=9%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC-CCCCC-CCCcccccCCcc-cccccceeeccccceEEEEEeCCCC---
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST-SNHDE-LPSESLVESPNQ-RANSLLNSYSDYEDSVYGLAWSSRE---  326 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---  326 (351)
                      -.|..|.++|+| .+++..|..| |.|-.+.. .+... ...+.....+.. .-+..+. ...+...|..+.|+|.+   
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCC
Confidence            468899999999 8888888766 44444432 11100 000000000000 0001111 12334579999999964   


Q ss_pred             CceEEEeeeCCeEEEeecCc
Q 018697          327 PWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~~  346 (351)
                      . .|+.-..|+.+|+||+.+
T Consensus       162 ~-~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  162 S-HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             C-eEEEEecCCEEEEEecCC
Confidence            5 677778899999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.43  E-value=1.3  Score=33.83  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=25.8

Q ss_pred             eEEEEEeCCCC-----CceEEEeeeCCeEEEeecCc
Q 018697          316 SVYGLAWSSRE-----PWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       316 ~v~~~~~~~~~-----~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .|.+++|||.|     +.+|++...++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999943     45899999999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.25  E-value=7.6  Score=36.71  Aligned_cols=112  Identities=8%  Similarity=0.064  Sum_probs=70.6

Q ss_pred             ceeeeEECC--CCCcEEEeecCCeEEEEEccc-------C----C---------cCceeecce-eEEEEcC--CCCCcEE
Q 018697          170 YLSGGAWDP--HDVNAVAATCESSVQFWDLRS-------M----G---------KTNSIEHAH-VRNVDYD--TKKKHLL  224 (351)
Q Consensus       170 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~-v~~~~~~--~~~~~~l  224 (351)
                      .|+.+....  ....|+++..||.|.+|.+++       .    .         +...+..+. +..++++  ...+ ++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence            344443322  345678888999999997631       1    0         111112122 7888887  6666 88


Q ss_pred             EEecCCCeEEEEecccCCc--ceeEeeCCCCceeEEEecCCC--CC---eEEEeeCCCeEEEEEc
Q 018697          225 VTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEY--DG---FILSAGTDSTVNLWLV  282 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~---~l~s~~~dg~i~iwd~  282 (351)
                      |++++...|.||-......  ....-..|...|-+|+|-++.  +.   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888886654211  111111356778899986654  12   7788888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.18  E-value=0.014  Score=50.54  Aligned_cols=141  Identities=13%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE-eecCCeEEEEEcccC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSM  200 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~  200 (351)
                      ......|-|.+.. ++.++.+..+..||-.. +.......      ......++|..+++.+++ +-..+.+.+||+.+.
T Consensus        36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~------tg~aldm~wDkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   36 GPIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNP------TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             ccceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCC------chhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence            3345668888876 55666678888888663 22222211      225677888888877654 456789999999864


Q ss_pred             CcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018697          201 GKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       201 ~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                      .. ..++.+  + -.-+.|++..+ .++.+...|.+.+|+.+. .+.+...-.|...++++++.+.+  +.+.++.|.
T Consensus       108 yt-qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~  180 (615)
T KOG2247|consen  108 YT-QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLED--YVILCDCDN  180 (615)
T ss_pred             hH-HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccc-hhhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence            32 222211  1 22267898888 677788999999999987 33333333489999999999976  444444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.09  E-value=0.51  Score=37.66  Aligned_cols=62  Identities=10%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCcee------ec--------c-e-eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSI------EH--------A-H-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~--------~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      +..++.++++.+.+|.+++||+.+++.+..-      -.        . . |..+.++.+|. -+++ -.+|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~-lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVT-LSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEE-EeCCCEEEeccc
Confidence            3446888999999999999999987654322      10        1 1 77777777775 4443 345677788765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.01  E-value=6.4  Score=35.23  Aligned_cols=138  Identities=12%  Similarity=0.184  Sum_probs=0.0

Q ss_pred             eeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCCCC-----CcEEEEec---------
Q 018697          172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKK-----KHLLVTAA---------  228 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~~~-----~~~l~~~~---------  228 (351)
                      +.++|.|+++.|++--..|.|++++..++..........         ...|+++|+-     ..+|+...         
T Consensus        33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc


Q ss_pred             -CCCeEEEEecc----cCCcceeEeeCC----CCceeEEEecCCCCCeEEEeeCCCe----------E------------
Q 018697          229 -DESGIHLWDLR----MLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGTDST----------V------------  277 (351)
Q Consensus       229 -~dg~i~i~d~~----~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~----------i------------  277 (351)
                       ....|.-|.+.    ........+...    ...-..|+|.|+| .++++.+..+.          .            
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG-~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~  191 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG-KIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNG  191 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC-cEEEEECCCCCCCcccccCcchhccccccccccc


Q ss_pred             --------EEEEcCCCCCCCCCCcccccCCccccccc--------------ceeeccccceEEEEEeCCCCCceEEE
Q 018697          278 --------NLWLVSTSNHDELPSESLVESPNQRANSL--------------LNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       278 --------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                              +|+.+..                   ...              +..+ +|.+ ...++|+|++. ++++
T Consensus       192 ~d~~~~~GkILRin~-------------------DGsiP~dNPf~~g~~~eIyA~-G~RN-p~Gla~dp~G~-Lw~~  246 (454)
T TIGR03606       192 KDYHAYMGKVLRLNL-------------------DGSIPKDNPSINGVVSHIFTY-GHRN-PQGLAFTPDGT-LYAS  246 (454)
T ss_pred             cCcccCceEEEEEcC-------------------CCCCCCCCCccCCCcceEEEE-eccc-cceeEECCCCC-EEEE

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.73  E-value=5.3  Score=34.31  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc--ccccccCcccceeeeEECCC---CCcEEEeec-C------
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPH---DVNAVAATC-E------  189 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d------  189 (351)
                      ..+.|+|.|+++  ++++-..|.|++++.. +.....+  ...........+..++++|+   ..+|++... .      
T Consensus         3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            357899999987  6667668999999933 2221111  11112223447889999994   344444332 1      


Q ss_pred             --CeEEEEEcccC-------CcCc-eee----cce-eEEEEcCCCCCcEEEEec
Q 018697          190 --SSVQFWDLRSM-------GKTN-SIE----HAH-VRNVDYDTKKKHLLVTAA  228 (351)
Q Consensus       190 --~~i~iwd~~~~-------~~~~-~~~----~~~-v~~~~~~~~~~~~l~~~~  228 (351)
                        ..|.-|....+       +.+. .+.    ..| ...|+|.|+|. ++++.+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G  132 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG  132 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence              23444444333       1111 111    134 77899999996 555544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13684 Ycf48-like protein; Provisional

Probab=92.70  E-value=6  Score=34.05  Aligned_cols=151  Identities=8%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      ...+.++.+.|++.  +++.+..|.+..- .+.+.........   .-...++++.+.++++.+++ +..|.+.+=....
T Consensus       172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEE-ecCCEEEEccCCC
Confidence            34678888888876  5555556655432 2222222222211   12347899999998876555 4567665323333


Q ss_pred             CCcCceeec-----ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---CCCCceeEEEecCCCCCeEEE
Q 018697          200 MGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       200 ~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +..-.....     .. +..+.+.|++. +++ ++.+|.+.. .... ++.-....   .-....+.+.|..++ ..++ 
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~-  318 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV-  318 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-
Confidence            332221111     12 78899999876 555 455665543 2222 33233322   122357778877665 5555 


Q ss_pred             eeCCCeEEEEEcC
Q 018697          271 AGTDSTVNLWLVS  283 (351)
Q Consensus       271 ~~~dg~i~iwd~~  283 (351)
                      .+..|.|.-|+-.
T Consensus       319 ~G~~G~il~~~~~  331 (334)
T PRK13684        319 LGQRGVLLRYVGS  331 (334)
T ss_pred             ECCCceEEEecCC
Confidence            5567887766543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=2.5  Score=37.79  Aligned_cols=74  Identities=8%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--------cce---eEe-------e-CCCCceeEEEecCCC--CCeEE
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------API---QEL-------P-GHTHWTWAVCCNPEY--DGFIL  269 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~---~~~-------~-~~~~~v~~~~~~~~~--~~~l~  269 (351)
                      |..+..++.|. .++-.+.+|.+.++=.+..+        ++.   +++       . ...-.+..++|+|+.  +..|.
T Consensus       106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            78888999998 66667777766555433222        111   111       1 111235678899987  67888


Q ss_pred             EeeCCCeEEEEEcCCC
Q 018697          270 SAGTDSTVNLWLVSTS  285 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~  285 (351)
                      .-+.|..||+||....
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            8899999999999764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.31  E-value=1.3  Score=33.90  Aligned_cols=31  Identities=6%  Similarity=0.066  Sum_probs=26.4

Q ss_pred             ceeEEEecCCC-----CCeEEEeeCCCeEEEEEcCC
Q 018697          254 WTWAVCCNPEY-----DGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       254 ~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+..++|||.|     +.+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965     46899999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.28  E-value=9.7  Score=35.51  Aligned_cols=141  Identities=11%  Similarity=-0.046  Sum_probs=68.7

Q ss_pred             cEEEEecCC-----cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC------CeEEEEEcccCCc-
Q 018697          135 DKLVSIDEE-----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGK-  202 (351)
Q Consensus       135 ~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~-  202 (351)
                      ++++++.||     +|-.||..+..-..  ..... ..........+  ++...++|+.+      .++..||..+.+- 
T Consensus       383 iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~-~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  383 LYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML-TRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             EEEEeccccccccccEEEecCCCCcccc--cCCCC-cceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            466666664     46678877533221  11110 00112222222  46666666643      4677888887642 


Q ss_pred             -Cceeecce-eEEEEcCCCCCcEEEEecCCC-----eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018697          203 -TNSIEHAH-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       203 -~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                       +..+.... -..++.- ++. +++.|+.|+     +|..||.++ .+ ...+..-..+...+.....+..+.+.|+.|+
T Consensus       458 ~~~~M~~~R~~~g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~-~~-W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  458 LIAPMNTRRSGFGVAVL-NGK-IYVVGGFDGTSALSSVERYDPET-NQ-WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             ecCCcccccccceEEEE-CCE-EEEECCccCCCccceEEEEcCCC-Cc-eeEcccCccccccccEEEECCEEEEEecccC
Confidence             22222222 2223332 343 788888776     377788775 22 2222211222222222222227788888776


Q ss_pred             -----eEEEEEcCC
Q 018697          276 -----TVNLWLVST  284 (351)
Q Consensus       276 -----~i~iwd~~~  284 (351)
                           +|..||..+
T Consensus       534 ~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  534 NNNLNTVECYDPET  547 (571)
T ss_pred             ccccceeEEcCCCC
Confidence                 455666554

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.24  E-value=5.2  Score=37.79  Aligned_cols=119  Identities=9%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee------ccccceeEEEecCCCCCcEEE
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      .+.+-.++|..-+..+..+|.-|+.|.-|.|............... .+..+.      .|-..++.+.|.-++.. ++.
T Consensus        16 sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F-~ip~f~dkl~s~~hf~~~~~~~f~~~~gD-ii~   93 (1243)
T COG5290          16 SGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRF-EIPFFPDKLLSFKHFHVLTFEYFLIDEGD-IIH   93 (1243)
T ss_pred             CCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEe-ccCCcchHhhhhhhhhhhheeeEEecCCc-EEE
Confidence            3566677787667777777666676666888776632211100000 000111      23333333433333221 111


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                             .+.|....+........    ....|.+.+|+.|.+.+.....+..|.++|
T Consensus        94 -------~~~dp~p~e~~~eivG~----v~nGIvaa~wS~DE~~~cvvt~~r~il~~~  140 (1243)
T COG5290          94 -------LVNDPTPAELEMEIVGK----VSNGIVAASWSADEKTWCVVTSTREILLFD  140 (1243)
T ss_pred             -------EEcCCCcccchhhhhcc----ccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence                   12222211111222221    233688889999999887777777887765

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.11  E-value=7  Score=33.49  Aligned_cols=214  Identities=12%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             cceeEEEecCCCCCcEEEEecCCc------EEEEEcCCCC-CCcccccc------cccC-----cccceeeeEECCCCCc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEEN------IFLWSLDCSN-KNAQVQSK------QSSG-----MLHYLSGGAWDPHDVN  182 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~------v~iwd~~~~~-~~~~~~~~------~~~~-----~~~~v~~~~~~~~~~~  182 (351)
                      +....+.+.+++.. +++-++++.      +..+++.... ....+...      ...+     -.-...++++.+++.+
T Consensus        20 GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            45677888865543 555566666      6655555311 11110000      0001     0113457788667776


Q ss_pred             EEEeecC------CeEEEEEcccCCcCceee----------------cce-eEEEEcCCCCCcEEEEecC-----CC--e
Q 018697          183 AVAATCE------SSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD-----ES--G  232 (351)
Q Consensus       183 l~~~~~d------~~i~iwd~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~-----dg--~  232 (351)
                      +++.-.+      ..|..++.. ++....+.                ... ...++++|+|+ .|++..+     |+  .
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCccc
Confidence            6665566      788888876 54433331                011 88999999998 4444432     22  1


Q ss_pred             -------EEEE--ecccCCcceeEe----eC-----CCCceeEEEecCCCCCeEEEee-----CCCeEEEEEcCCCCCCC
Q 018697          233 -------IHLW--DLRMLKAPIQEL----PG-----HTHWTWAVCCNPEYDGFILSAG-----TDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       233 -------i~i~--d~~~~~~~~~~~----~~-----~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~  289 (351)
                             ++++  |..+.+.+...+    ..     ....++.+.+-+++ .+|+.=-     ....++|+.+.......
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~~at~  255 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLSDATD  255 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEcccccc
Confidence                   4454  444322223222    21     34678889999998 6555321     24466666554321111


Q ss_pred             C--CCcccccCCcccccccceeecc---ccceEEEEEeCC--CCCceEEEeeeCCe
Q 018697          290 L--PSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSS--REPWIFASLSYDGR  338 (351)
Q Consensus       290 ~--~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~l~s~~~dg~  338 (351)
                      .  ..............+.+..+..   ....+-+|+|.|  +|...|+..++|+.
T Consensus       256 ~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF  311 (326)
T PF13449_consen  256 VPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF  311 (326)
T ss_pred             cccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence            0  0000000000011222222211   145678899976  66656777776553

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.70  E-value=3.2  Score=41.33  Aligned_cols=154  Identities=11%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee--------EECCCCCcEEEeecCC
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--------AWDPHDVNAVAATCES  190 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~l~~~~~d~  190 (351)
                      |...-..+-+.|.=.+  +--+-|+.+.+|+.++++....+-.     ..+.|..+        .|.|.=+++++.+..-
T Consensus        77 ~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~-----~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~  149 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDG-----LSHTILKVGLVKPKPGVFVPEIQHLLVVATPV  149 (1311)
T ss_pred             Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccc-----hhhhheeeeeecCCCCcchhhhheeEEecccc
Confidence            4444445555665442  3335689999999997544433221     12234443        2444445666665556


Q ss_pred             eEEEEEcccCCc-------C--ceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEeccc--C--------Cc------
Q 018697          191 SVQFWDLRSMGK-------T--NSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRM--L--------KA------  243 (351)
Q Consensus       191 ~i~iwd~~~~~~-------~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--------~~------  243 (351)
                      .|.++-+.-.+.       .  ..+....  |.|+....+|+ +++ ++.||  .+|.+--  .        .+      
T Consensus       150 ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s  225 (1311)
T KOG1900|consen  150 EIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKS  225 (1311)
T ss_pred             eEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchh
Confidence            666654432211       0  1122112  89999888897 666 45555  4444321  0        00      


Q ss_pred             -------ceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          244 -------PIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       244 -------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                             .+-.+. .+..+|..+.....- .++.+-+..|+|.+||+..
T Consensus       226 ~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  226 VLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             HHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence                   011223 466799999998877 8999999999999999986

>PHA03098 kelch-like protein; Provisional

Probab=91.67  E-value=11  Score=34.87  Aligned_cols=99  Identities=11%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             CCCcEEEeecC------CeEEEEEcccCCc--Cceeecce-eEEEEcCCCCCcEEEEecCC--------CeEEEEecccC
Q 018697          179 HDVNAVAATCE------SSVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRML  241 (351)
Q Consensus       179 ~~~~l~~~~~d------~~i~iwd~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~  241 (351)
                      ++...+.|+.+      ..+..||+.+.+-  ...+..+. -.+++. .++. +++.|+.+        ..+.+||..+ 
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~-  465 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNIKVYNIVESYNPVT-  465 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCE-EEEECCccCCCCCcccceEEEecCCC-
Confidence            45555566521      4678899876532  11222122 122222 2444 67777643        2388888875 


Q ss_pred             CcceeEeeC---CCCceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018697          242 KAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (351)
Q Consensus       242 ~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~  284 (351)
                      .+ ...+..   .......+.+  ++ .+++.|+.+     ..+.+||...
T Consensus       466 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        466 NK-WTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             Cc-eeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence            21 222211   1111112222  45 666777654     4677888775

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.15  E-value=1.9  Score=34.40  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee----ccccceEEEEEeCCCCCceEEEeeeC
Q 018697          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      ...+ .+|++.+.+|.+++||+...........-         ...+...    ......|..+..+.+|. -+++-+ +
T Consensus        19 ~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si---------~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-n   86 (219)
T PF07569_consen   19 ECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSI---------APLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-N   86 (219)
T ss_pred             EeCC-CEEEEEeCCCeEEEEECCCCeeccCCccH---------HHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-C
Confidence            3456 78999999999999999983221111000         0000000    03445688899998887 565555 5


Q ss_pred             CeEEEeecC
Q 018697          337 GRVVVESVK  345 (351)
Q Consensus       337 g~v~vw~~~  345 (351)
                      |..+.|+.+
T Consensus        87 g~~y~y~~~   95 (219)
T PF07569_consen   87 GDSYSYSPD   95 (219)
T ss_pred             CCEEEeccc
Confidence            677888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.13  E-value=0.95  Score=24.45  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             ccccceeEEEecCCCCCcEEEEecC--CcEEEE
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDE--ENIFLW  148 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d--~~v~iw  148 (351)
                      .....-....|+|||+.+++++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3444567789999999867777666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.05  E-value=0.28  Score=46.30  Aligned_cols=135  Identities=11%  Similarity=0.068  Sum_probs=77.2

Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC-CCcEEEeecCCeEEEEEccc--CCcCceee----c--ce
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRS--MGKTNSIE----H--AH  210 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~--~~~~~~~~----~--~~  210 (351)
                      +..+-+++-+....-. ...+..   +..+.+..++|... -..+.  -.-|.+.+||+.-  |+....+.    .  +.
T Consensus       108 ~~~~~vrvaN~~~sm~-~~~l~k---gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs  181 (1283)
T KOG1916|consen  108 GMENGVRVANQEPSMR-HNELAK---GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS  181 (1283)
T ss_pred             chhhhhhhccCcchhH-HHHHHh---cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence            3456677666553221 112222   23346777777431 12222  2236788898763  43322221    1  11


Q ss_pred             -eEEEEcCC---CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE-----------ecCCCCCeEEEeeCCC
Q 018697          211 -VRNVDYDT---KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-----------CNPEYDGFILSAGTDS  275 (351)
Q Consensus       211 -v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~l~s~~~dg  275 (351)
                       +.-+.|.|   +.. ++..+..++.|++....+..  ...+.+|..++..++           .+||| ..++++..||
T Consensus       182 ~~~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG  257 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKV-YICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDG  257 (1283)
T ss_pred             Ccceeeecccccccc-eeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCC
Confidence             44555554   333 46667778888888776522  244456777766554           47899 9999999999


Q ss_pred             eEEEEEcCC
Q 018697          276 TVNLWLVST  284 (351)
Q Consensus       276 ~i~iwd~~~  284 (351)
                      .+++|-+.-
T Consensus       258 ~v~f~Qiyi  266 (1283)
T KOG1916|consen  258 SVGFYQIYI  266 (1283)
T ss_pred             ccceeeeee
Confidence            988887764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.94  E-value=0.71  Score=25.33  Aligned_cols=39  Identities=13%  Similarity=0.072  Sum_probs=26.5

Q ss_pred             CCCCcEEEee-cCCeEEEEEcccCCcCceeecce-eEEEEc
Q 018697          178 PHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDY  216 (351)
Q Consensus       178 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~  216 (351)
                      |+++.|+++. .++.|.++|..+++.+..+..+. ...++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5677777765 57899999998877666666443 444433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.84  E-value=1.5  Score=23.93  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      |+++.++++...++.|.++|..+ .+.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence            56776667676789999999976 555666554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.61  E-value=15  Score=35.06  Aligned_cols=99  Identities=13%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             eeEECCCCCcEEEeecCC-----eEEEEEcc---cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          173 GGAWDPHDVNAVAATCES-----SVQFWDLR---SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~-----~i~iwd~~---~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      .++|-|+|..+++-..||     .|.++..+   -|+.-....... +..++|+-... .++ ......+.+|-..+..-
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~-vla-v~~~n~~~lwttkNyhW  328 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST-VLA-VAEGNLLKLWTTKNYHW  328 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH-HHH-HhhcceEEEEEccceEE
Confidence            378999999999876443     45555432   122211222222 67778877665 344 34556899998765321


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .++ ....-..+.-+.|+|.....++-.+..
T Consensus       329 YLK-~e~~ip~~s~vkwhpe~~nTl~f~d~~  358 (1243)
T COG5290         329 YLK-VERQIPGISYVKWHPEEKNTLLFRDGE  358 (1243)
T ss_pred             EEE-EeecCCCcceeeeccccCcEEEEecCC
Confidence            121 122345567788999775555544433

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.42  E-value=1.3  Score=23.83  Aligned_cols=32  Identities=3%  Similarity=0.114  Sum_probs=20.9

Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCC--CeEEEE
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTD--STVNLW  280 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iw  280 (351)
                      ...........|+|+|+.++.++..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455677889999996666666666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.09  E-value=3.4  Score=36.25  Aligned_cols=156  Identities=13%  Similarity=0.045  Sum_probs=88.8

Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-ee---ecc---e-eE-EEEcCCCCCcEEEEecCCCeEEEE-ec
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SI---EHA---H-VR-NVDYDTKKKHLLVTAADESGIHLW-DL  238 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~---~-v~-~~~~~~~~~~~l~~~~~dg~i~i~-d~  238 (351)
                      ..+..+-..|+++.+.+-+. ..+.++++.+..... .+   ..+   | |. .+..-..|. -+.++++||-|.-| |.
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeeee
Confidence            36777888999998887665 688888887643211 11   112   1 22 222223343 56678889888776 66


Q ss_pred             ccCCcce----eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018697          239 RMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (351)
Q Consensus       239 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (351)
                      +...++.    +.++-...++.-+.=... .+-+++-...|++.++....                   .+.+..-.. -
T Consensus       299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~-------------------~~~lL~~~~-~  357 (733)
T COG4590         299 RRDGQPHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTS-------------------EKLLLFERA-Y  357 (733)
T ss_pred             ecCCCCcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeeccc-------------------Ccceehhhh-h
Confidence            6533321    112111223333322222 25677888888888876655                   232222112 2


Q ss_pred             ceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          315 DSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      ..+.-+++||.+. ++++- ..|.++++.+++--|
T Consensus       358 ~~~~~~~~Sp~~~-~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         358 QAPQLVAMSPNQA-YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             cCcceeeeCcccc-hheee-cCCceEEEEecCCCC
Confidence            2466789999988 45443 357899988875443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.02  E-value=16  Score=33.80  Aligned_cols=60  Identities=8%  Similarity=-0.109  Sum_probs=34.4

Q ss_pred             cEEEEEcCCCCCCcccccccccCc----ccceeeeEECCCCC---cEEEeecCCeEEEEEcccCCcC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGM----LHYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKT  203 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~  203 (351)
                      .|.-.|+++++........++.-+    .....-+....+++   .++.+..+|.+++.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            566667777665544433221111    01112222334555   5667889999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.01  E-value=3.3  Score=36.36  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=93.4

Q ss_pred             eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-ccccee-eeEECCCCCcEEEeec
Q 018697          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLS-GGAWDPHDVNAVAATC  188 (351)
Q Consensus       111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~  188 (351)
                      +.+..+..--..|..+-..|+|+.+++.++  .++.++++.+.....+.+....++ ....|+ .+..-..+..++++..
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            333344445567778889999996555554  678888887543222222111111 112333 2333345667888889


Q ss_pred             CCeEEEE-EcccCCcCceeecceeEEEEcC--------CC-CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE
Q 018697          189 ESSVQFW-DLRSMGKTNSIEHAHVRNVDYD--------TK-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (351)
Q Consensus       189 d~~i~iw-d~~~~~~~~~~~~~~v~~~~~~--------~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  258 (351)
                      ||.|.-| |.+.+.. ..+.  |+....+.        |+ .+.-+++-..+|++.++.... .+++. ++.--..+.-+
T Consensus       289 dG~vsQWFdvr~~~~-p~l~--h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL-~~~~~~~~~~~  363 (733)
T COG4590         289 DGLVSQWFDVRRDGQ-PHLN--HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLL-FERAYQAPQLV  363 (733)
T ss_pred             CCceeeeeeeecCCC-Ccce--eeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-Cccee-hhhhhcCccee
Confidence            9988776 5554322 1111  12222222        21 222566677788888777554 22222 22222356778


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      +++|.+ .++++-. .|.|+++.+++.
T Consensus       364 ~~Sp~~-~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         364 AMSPNQ-AYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             eeCccc-chheeec-CCceEEEEecCC
Confidence            999999 7777544 567999988873

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.00  E-value=9  Score=34.21  Aligned_cols=31  Identities=13%  Similarity=0.359  Sum_probs=25.2

Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..|..++..+.. +.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence            348899999888 9999999999999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.57  E-value=8.8  Score=30.25  Aligned_cols=119  Identities=11%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             EEEEecCCCeEEEEeccc-CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC------eEEEE-EcCCCCCCCCCCc-
Q 018697          223 LLVTAADESGIHLWDLRM-LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS------TVNLW-LVSTSNHDELPSE-  293 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~~-  293 (351)
                      +++ +.....|.+|++.. ..+++.+|.. -+.|..+.++..| .||+|--.+.      .+|+| +.+....+..+.. 
T Consensus        31 Lfv-a~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   31 LFV-AASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             EEE-EcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            444 46667899999983 3456666663 4889999999999 9999874422      56665 3333211111111 


Q ss_pred             -ccc---cCC-cccccccceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          294 -SLV---ESP-NQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       294 -~~~---~~~-~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                       ...   ..+ .......+.... +-+.++.+++..|-... |+.|+ ++.+.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEE
Confidence             111   000 001111122221 22456788888885442 44444 56888887753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.35  E-value=3.8  Score=36.15  Aligned_cols=80  Identities=10%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce------eEEEEcCCC--------------CCcEEEEec
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTK--------------KKHLLVTAA  228 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------v~~~~~~~~--------------~~~~l~~~~  228 (351)
                      ..+.+++.+|.+++.++...-|.|.++|+.++..++..+.-.      +....-...              ..++++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            457788999998877776667999999999988777665211      111111111              112344456


Q ss_pred             CCCeEEEEecccCCcceeEee
Q 018697          229 DESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       229 ~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      .-|.|.||.++. +..+..+.
T Consensus       388 rRg~lEvW~~~~-g~Rv~a~~  407 (415)
T PF14655_consen  388 RRGILEVWSMRQ-GPRVAAFN  407 (415)
T ss_pred             cCCeEEEEecCC-CCEEEEEE
Confidence            678899999887 44454443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.18  E-value=23  Score=34.53  Aligned_cols=170  Identities=10%  Similarity=0.099  Sum_probs=95.9

Q ss_pred             cCCcceeeeeeC---CC----CCceEEEEeecCCcceEEEEEcc------cccCCCCCCcceeeeeeecc---ccceeEE
Q 018697           63 SHPNEIWDLSSC---PF----DQRIFSTVFSTGESYGAAIWQIP------ELYGQLNSPQLERIAALDAH---VGKINCV  126 (351)
Q Consensus        63 ~h~~~v~~i~~~---~~----~~~l~~~~~~~~~d~~i~vw~~~------~~~~~~~~~~~~~~~~~~~h---~~~v~~~  126 (351)
                      .-..+|..|+|.   ..    ..+|++-     ....+.|+...      ........-...++..+..+   ..+...+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-----t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv  151 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-----TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADV  151 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-----cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceE
Confidence            456788899997   21    2344442     45567777722      11111111122444455322   3467889


Q ss_pred             EecCCCCCcEEEEecCCcEEEEEcCCCCCCc----ccccccc------cCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNA----QVQSKQS------SGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~----~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      +|+|.....+++-...|...||++....+..    .......      ......-..+.|.++-..|++.+ ...+.++|
T Consensus       152 ~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d  230 (765)
T PF10214_consen  152 AFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLID  230 (765)
T ss_pred             EeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEE
Confidence            9999876646666788999999993211111    1110000      01112345678988777777765 45788999


Q ss_pred             cccCCcCceeecc---e-eEEEEcCCCCCc-EEEEecCCCeEEEEeccc
Q 018697          197 LRSMGKTNSIEHA---H-VRNVDYDTKKKH-LLVTAADESGIHLWDLRM  240 (351)
Q Consensus       197 ~~~~~~~~~~~~~---~-v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  240 (351)
                      +++......+...   . |..+.-+|.... .|+-.  ...|...|+..
T Consensus       231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             CCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            9987653312212   1 888888887332 33322  25777788776

These proteins are found in fungi.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.14  E-value=3.5  Score=27.38  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=34.2

Q ss_pred             eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          186 ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       186 ~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      +..+|.+..||+.+++....+..-. .+.+++++++.+++++-.....|.-|-+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            3446888899999876544444333 8999999999977776665555554443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.37  E-value=18  Score=36.41  Aligned_cols=151  Identities=10%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeee--------eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLS--------SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE  111 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~--------~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~  111 (351)
                      -|+.+.+|++..++....   +.+-...|..+.        |.|.=++++..    +..-.|.++-+.-...........
T Consensus        97 iDn~L~lWny~~~~e~~~---~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv----aT~~ei~ilgV~~~~~~~~~~~f~  169 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAE---YDGLSHTILKVGLVKPKPGVFVPEIQHLLVV----ATPVEIVILGVSFDEFTGELSIFN  169 (1311)
T ss_pred             eCCeEEEEEcCCCCcccc---ccchhhhheeeeeecCCCCcchhhhheeEEe----cccceEEEEEEEeccccCcccccc
Confidence            578999999998554322   223334444443        33444444444    233345665554211100000111


Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEecCCcEE--EEEcCCC---CCCccc-------------ccccccCcccceee
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF--LWSLDCS---NKNAQV-------------QSKQSSGMLHYLSG  173 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~--iwd~~~~---~~~~~~-------------~~~~~~~~~~~v~~  173 (351)
                      ...++......|.|+....+|+  ++.++.||.|+  +|....+   .++.++             +......+.++|..
T Consensus       170 ~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  170 TSFKISVDGVSVNCITYTENGR--IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             cceeeecCCceEEEEEeccCCc--EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence            1123333456789999888888  66667777554  2222211   001110             01111244568999


Q ss_pred             eEECCCCCcEEEeecCCeEEEEEccc
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      ++....-..+.+-+..++|.+||+..
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccC
Confidence            99987777777888999999999976

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.11  E-value=27  Score=33.98  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=48.8

Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc--cccccceeeccccceEEEEEeCCCCCceE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (351)
                      ..|.++....-+ .+++..-.||+|.++|..+....... ...+..+..  ...+.-..+. +-..+..++|||++. .+
T Consensus       260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c-~~  335 (753)
T PF11635_consen  260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTMC-SL  335 (753)
T ss_pred             CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc-ccccCCccccccccccccccc-cCCCCceEEECcccc-eE
Confidence            446667766666 78999999999999999874322211 000000000  0001111221 122456799999988 67


Q ss_pred             EEeeeCCeEE
Q 018697          331 ASLSYDGRVV  340 (351)
Q Consensus       331 ~s~~~dg~v~  340 (351)
                      +.-..+|.+.
T Consensus       336 v~~~~~~~~~  345 (753)
T PF11635_consen  336 VQIDEDGKTK  345 (753)
T ss_pred             EEEecCCCce
Confidence            7778888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.01  E-value=12  Score=29.62  Aligned_cols=38  Identities=8%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH  134 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  134 (351)
                      ....|.+|++..       ...+++.++. .-+.|..+.++..|++
T Consensus        36 ~g~~Vev~~l~~-------~~~~~~~~F~-Tv~~V~~l~y~~~GDY   73 (215)
T PF14761_consen   36 SGCKVEVYDLEQ-------EECPLLCTFS-TVGRVLQLVYSEAGDY   73 (215)
T ss_pred             CCCEEEEEEccc-------CCCceeEEEc-chhheeEEEeccccce
Confidence            455799999882       2445666663 4488999999999995

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=87.90  E-value=9.8  Score=32.75  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cce----eEEEEcCCCCCcEEE-----------------
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH----VRNVDYDTKKKHLLV-----------------  225 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~----v~~~~~~~~~~~~l~-----------------  225 (351)
                      .....++|...+..|+++..---+..-+...+.......  .+.    .+.+..+++|. ++.                 
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l  193 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAAL  193 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeee
Confidence            367789999988667776543334444444433111111  111    56666666554 322                 


Q ss_pred             EecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe-eCC-CeEEEE
Q 018697          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTD-STVNLW  280 (351)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d-g~i~iw  280 (351)
                      .+..+|.+.-||..+  +..+.+...-.-.+.++.||++ .+++.+ ..- ...+.|
T Consensus       194 ~g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~-sfvl~~Et~~~ri~ryw  247 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDG-SFVLVAETTTARIKRYW  247 (376)
T ss_pred             cCCCccceEEecCcc--cchhhhhhcccccccccCCCCC-CEEEEEeeccceeeeeE
Confidence            233456777777664  2344444344566889999999 555544 333 344556

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.81  E-value=8.4  Score=27.80  Aligned_cols=107  Identities=9%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             eEECCCCCcEEEeecCCeEEEEEcccCC--------cCceeecce-eEEEEcCC----CCCcEEEEecCCCeEEEEeccc
Q 018697          174 GAWDPHDVNAVAATCESSVQFWDLRSMG--------KTNSIEHAH-VRNVDYDT----KKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      -.|....+.|++++.-|+|.|++.....        .+..+...+ |++++--+    ++...|+.|+. ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            3566667789999999999999877432        233333333 66664433    22336776665 5789999987


Q ss_pred             CCcceeEeeCCCCceeEEEecCC---CCCeEEEeeCCCeEEEEEcCC
Q 018697          241 LKAPIQELPGHTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ......  +.-...|+++.+-.-   .+.+++. +.+..|.-||..-
T Consensus        83 N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G  126 (136)
T PF14781_consen   83 NSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEG  126 (136)
T ss_pred             Cchhhh--hhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCC
Confidence            443222  223466777776322   2144444 4466777777764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.30  E-value=16  Score=30.60  Aligned_cols=30  Identities=7%  Similarity=-0.007  Sum_probs=24.8

Q ss_pred             eEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          316 SVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ...+++.+++|. ++.+--..+.|..|+...
T Consensus       187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             SECEEEEETTTE-EEEEECCCTEEEEEETTT
T ss_pred             CCceEEECCCCc-EEEecCCCCeEEEEeCCC
Confidence            456788889887 788888899999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.06  E-value=3.4  Score=38.32  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=27.2

Q ss_pred             ceeeeEECC----CCCcEEEeecCCeEEEEEcccCCcCcee
Q 018697          170 YLSGGAWDP----HDVNAVAATCESSVQFWDLRSMGKTNSI  206 (351)
Q Consensus       170 ~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~  206 (351)
                      ....++.++    +..++++.+.|+.+++||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            345556665    6778889999999999999999884443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.47  E-value=15  Score=36.76  Aligned_cols=140  Identities=15%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             ceEEEEEcccccCCCCCCcc-eeeee--eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           91 YGAAIWQIPELYGQLNSPQL-ERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~-~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      |.+.|+|+-+.-+....|.. ..++.  .+..+++|..++= -+|.  ++ .+....|.||+++.......+-...   .
T Consensus      1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~--l~-~~~GqKI~v~~l~r~~~ligVaFiD---~ 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH--LL-SSQGQKIIVRKLDRDSELIGVAFID---L 1137 (1366)
T ss_pred             ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE--EE-EccCcEEEEEEeccCCcceeeEEec---c
Confidence            67999998652221111111 11111  1345677777653 3444  44 4445789999995432221111100   0


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee-ecce----eEEEEcCCCCCc-EEEEecCCCeEEEEecc
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHAH----VRNVDYDTKKKH-LLVTAADESGIHLWDLR  239 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~----v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~  239 (351)
                        +++-.+...-.++|+.|.--..|.+.-.........+ ....    +.++.|--+|.+ .++++..+++|++|-..
T Consensus      1138 --~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1138 --PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             --ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence              2222222223456666665556666554432222222 1111    888888777764 36677889999988754

>PHA02790 Kelch-like protein; Provisional

Probab=86.42  E-value=20  Score=32.76  Aligned_cols=59  Identities=10%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             CCCcEEEeecC--CeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecCCC---eEEEEeccc
Q 018697          179 HDVNAVAATCE--SSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAADES---GIHLWDLRM  240 (351)
Q Consensus       179 ~~~~l~~~~~d--~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~  240 (351)
                      ++...++|+.+  ..+..||..+.+  ....+....  ...++.  ++. +.+.|+.++   .+..||.++
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCC
Confidence            45555666643  457788876542  122222111  222222  455 777777543   467788764

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=85.62  E-value=29  Score=31.88  Aligned_cols=234  Identities=14%  Similarity=0.094  Sum_probs=110.1

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecC-CcceeeeeeCCCC-CceEEEEeecCCcceEEEEEcccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH-PNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      ...+..++++++    ++|.++.+.+..++..+... ..+. .....++.+..++ ..|+++.  ...|+.+.-|...  
T Consensus       218 ~~~~~~~~lL~~----e~G~l~~l~l~~~~~~i~i~-~~g~~~~~~s~l~~l~~g~d~lf~gs--~~gds~l~~~~~~--  288 (504)
T PF10433_consen  218 YDKDGDRILLQD----EDGDLYLLTLDNDGGSISIT-YLGTLCSIASSLTYLKNGGDYLFVGS--EFGDSQLLQISLS--  288 (504)
T ss_dssp             SSTTSSEEEEEE----TTSEEEEEEEEEEEEEEEEE-EEEE--S-ESEEEEESTT--EEEEEE--SSS-EEEEEEESE--
T ss_pred             ecCCCCEEEEEe----CCCeEEEEEEEECCCeEEEE-EcCCcCChhheEEEEcCCCEEEEEEE--ecCCcEEEEEeCC--
Confidence            344556677664    67899988888765422222 2232 4455667776655 2444442  3445566666543  


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEEecCC---CC-------CcEEEE--ecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVLWWSS---GR-------HDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~-------~~~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                             ..+.+..+ ..-++|.+++..+.   +.       .++.++  +.+|.+++..-.-+-...........+ ..
T Consensus       289 -------~l~~~~~~-~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~  359 (504)
T PF10433_consen  289 -------NLEVLDSL-PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VT  359 (504)
T ss_dssp             -------SEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EE
T ss_pred             -------CcEEEEec-cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ce
Confidence                   45666666 34578888887532   12       323333  357889887543111100111112222 33


Q ss_pred             ceeeeEECCC-CCcEEEeecCCeEEEEEcc---cCCcCc-----eeecce--eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          170 YLSGGAWDPH-DVNAVAATCESSVQFWDLR---SMGKTN-----SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       170 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~---~~~~~~-----~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      .++.+..... +.+|+.+. ...-+++.+.   ..+.+.     .+....  +.+-.+. ++  .++=-.. ..|++.+.
T Consensus       360 ~iW~l~~~~~~~~~lv~S~-~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~--~ivQVt~-~~i~l~~~  434 (504)
T PF10433_consen  360 GIWTLKLSSSDHSYLVLSF-PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG--RIVQVTP-KGIRLIDL  434 (504)
T ss_dssp             EEEEE-SSSSSBSEEEEEE-SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT--EEEEEES-SEEEEEES
T ss_pred             EEEEeeecCCCceEEEEEc-CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC--eEEEEec-CeEEEEEC
Confidence            5555554432 34455544 3445566654   222221     111111  3333332 22  2332222 35888887


Q ss_pred             ccCCcceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          239 RMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       239 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .. .+....... ....|...+...   .+++.+-.++.+.++.+..
T Consensus       435 ~~-~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~  477 (504)
T PF10433_consen  435 ED-GKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDD  477 (504)
T ss_dssp             SS-TSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEET
T ss_pred             CC-CeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEEC
Confidence            65 444444432 344566665554   4566666678888888876

...

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.00  E-value=19  Score=29.24  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             eeeEECCCCCcEEEeec---CCeEEEEEcccC--CcC-----ceeecce-eEEEEcCCCCCcEEEEecCC-CeEEEEecc
Q 018697          172 SGGAWDPHDVNAVAATC---ESSVQFWDLRSM--GKT-----NSIEHAH-VRNVDYDTKKKHLLVTAADE-SGIHLWDLR  239 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~--~~~-----~~~~~~~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~  239 (351)
                      .+-.+.+||+.+.+|+.   ...+++++....  .+.     ..+..++ -.+...-|||+ +|+.|+.. .+..+|..+
T Consensus        70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~-vlIvGG~~~~t~E~~P~~  148 (243)
T PF07250_consen   70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGR-VLIVGGSNNPTYEFWPPK  148 (243)
T ss_pred             cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCC-EEEEeCcCCCcccccCCc
Confidence            33467889998888863   346888886541  111     1123233 44555668998 56666654 355555543


Q ss_pred             cCCcceeEe--eCC-----C-CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          240 MLKAPIQEL--PGH-----T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       240 ~~~~~~~~~--~~~-----~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ........+  ...     . ..--.+...|+| ++++.+..+.  .|||...
T Consensus       149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~  198 (243)
T PF07250_consen  149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKT  198 (243)
T ss_pred             cCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCC
Confidence            211111111  100     0 111235567999 8888888764  4668776

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.43  E-value=6.2  Score=36.64  Aligned_cols=34  Identities=18%  Similarity=0.407  Sum_probs=23.9

Q ss_pred             ceeEEEecC---CCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          254 WTWAVCCNP---EYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       254 ~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                      .+..+++++   ++..++++.+.|+++|+||+.+...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            345555655   2338999999999999999998543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.41  E-value=38  Score=32.17  Aligned_cols=37  Identities=11%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +..+..+|+.+ .|+-=...|.|.+-+... .+.+..+.
T Consensus       219 ~~ki~VS~n~~-~laLyt~~G~i~~vs~D~-~~~lce~~  255 (829)
T KOG2280|consen  219 VVKISVSPNRR-FLALYTETGKIWVVSIDL-SQILCEFN  255 (829)
T ss_pred             EEEEEEcCCcc-eEEEEecCCcEEEEecch-hhhhhccC
Confidence            88899999998 677778889999988775 55555544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.21  E-value=26  Score=29.39  Aligned_cols=31  Identities=6%  Similarity=0.167  Sum_probs=26.2

Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .....++++++| .++++--..+.|..|+...
T Consensus       186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             -SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred             CCCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence            456778899998 8888999999999999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.33  E-value=33  Score=28.65  Aligned_cols=92  Identities=13%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             CeEEEEEcccCCcCceee--cceeEEEEcCCCCCcEEEEec------CCCeEEEEecccCCcceeEeeC-----CCCcee
Q 018697          190 SSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAA------DESGIHLWDLRMLKAPIQELPG-----HTHWTW  256 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~  256 (351)
                      ..|++||..+.+-...-.  .+.|..+.|..+.+ +++.|.      ....+..||... . ....+..     -.++|.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~-~-~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN-Q-TWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC-C-eeeecCCcccccCCCcEE
Confidence            468999987654222111  13399999986665 777665      356788999875 2 3444443     236788


Q ss_pred             EEEecC-CCCCeEEEee-CCC--eEEEEEcCC
Q 018697          257 AVCCNP-EYDGFILSAG-TDS--TVNLWLVST  284 (351)
Q Consensus       257 ~~~~~~-~~~~~l~s~~-~dg--~i~iwd~~~  284 (351)
                      .+.+.. ++..+.+.|. .++  .|..||-..
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            877743 3324554444 333  566776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		9e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-04

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
           L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
             +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
           LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S     ++  E   E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
                   LL  +  +   +   +W+  EPW+  S+S D
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 127 LWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVN 182
           L W+S     L+S  D+  + LW ++   K  ++   ++  +G    +   AW   H+  
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 183 AVAATCESSVQFWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWD 237
             +   +  +  WD RS    K + +  AH   V+   ++   + +L T + +  + LWD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297
           LR LK  +     H    + V  +P  +  + S+GTD  +N+W +S     ++  E   E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS-----KIGEEQSAE 359
Query: 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336
                   LL  +  +   +   +W+  EPW+  S+S D
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 15/214 (7%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW +    K  +V   ++  +G    +   +W   H+    +   +  + 
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 194 FWDLRSMGKTNSIEH------AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247
            WD RS   T+   H      A V  + ++   + +L T + +  + LWDLR LK  +  
Sbjct: 254 IWDTRS-NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
              H    + V  +P  +  + S+GTD  +N+W +S    ++ P ++    P      LL
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP-----ELL 367
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
             +  +   +   +W+  EPW+  S+S D  + V
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 376
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
            +  +   +   +W+  EPWI  S+S D  + V
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 409

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 374
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
            +  +   +   +W+  EPWI  S+S D  + V
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 407

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Query: 137 LVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAWDP-HDVNAVAATCESSVQ 193
           L + D+  I LW ++ + K  +V   ++  +G    +   AW   H+    +   +  + 
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 194 FWDLRS--MGKTNSIEHAHVRNVD---YDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            WD R+    K +    AH   V+   ++   + +L T + +  + LWDLR LK  +   
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H    + V  +P  +  + S+GTD  +++W +S     ++  E   E        LL 
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-----KIGEEQSTEDAEDGPPELLF 372
Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
            +  +   +   +W+  EPWI  S+S D  + V
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 113 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 167
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 168 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 227 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 269
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 270 QTFTQHQGAVKAVAWC---PWQSNVLATGG 296

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 33  WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 87
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 88  SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 147 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 189
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 190 QTFTQHQGAVKAVAWC---PWQSNVLATGG 216

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           WSSG  + L    + +++LWS    +    +Q +Q      Y+S  AW          T 
Sbjct: 124 WSSG--NVLAVALDNSVYLWSASSGDILQLLQMEQPG---EYISSVAWIKEGNYLAVGTS 178
Query: 189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            + VQ WD++   +  ++  +H   V   +   ++L + +    IH  D+R+ +  +  L
Sbjct: 179 SAEVQLWDVQQQKRLRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 249 PGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307
            GH+     +   P  DG  + S G D+ VN+W          PS     +P +     L
Sbjct: 238 SGHSQEVCGLRWAP--DGRHLASGGNDNLVNVW----------PS-----APGEGGWVPL 280
Query: 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDG 337
            +++ ++ +V  +AW    PW    L+  G
Sbjct: 281 QTFTQHQGAVKAVAWC---PWQSNVLATGG 307

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)
Query: 57  ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116
           + + L  H + +W ++  P  Q    T+ S  +     +W      GQL       +  L
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLW---NRNGQL-------LQTL 217
Query: 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176
             H   +  V +   G+     S D++ + LW     N+N Q+  +  +G    ++G A+
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLW-----NRNGQLL-QTLTGHSSSVNGVAF 270
Query: 177 DPHDVNAVAATCESSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHL 235
            P      +A+ + +V+ W+    + +T +   + V  V + +     + +A+D+  + L
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKL 329
Query: 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295
           W+       +Q L GH+   W V  +P+    I SA  D TV LW               
Sbjct: 330 WNRN--GQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW--------------- 371
Query: 296 VESPNQRANSLLNSYSDYEDSVYGLAWS 323
                 R   LL + + +  SV G+A+S
Sbjct: 372 -----NRNGQLLQTLTGHSSSVRGVAFS 394

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS- 199
           D++ + LW     N+N Q   +  +G    + G A+ P      +A+ + +V+ W+    
Sbjct: 323 DDKTVKLW-----NRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376
Query: 200 MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259
           + +T +   + VR V + +     + +A+D+  + LW+       +Q L GH+   W V 
Sbjct: 377 LLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 433
Query: 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319
            +P+ D  I SA  D TV LW                     R   LL + + +  SV G
Sbjct: 434 FSPD-DQTIASASDDKTVKLW--------------------NRNGQLLQTLTGHSSSVRG 472
Query: 320 LAWS 323
           +A+S
Sbjct: 473 VAFS 476

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
           L+ H G +   L  S+G+ + L+S   +   + W L   ++   V  +   G  H +   
Sbjct: 13  LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
                   A++A+ + +++ WD+ + G+T      H   V +VD D KK  ++++ + + 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
            I +W ++     +  L GH  W   V   P          I+SAG D  V  W ++   
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
                    SN + L   P  +L+ S  +    +L + +          +D V+ LA+S 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
              W+ A+        S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 130 SSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           S+G+ + L+S   +   + W L   ++   V  +   G  H +           A++A+ 
Sbjct: 20  SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 79
Query: 189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245
           + +++ WD+ + G+T      H   V +VD D KK  ++++ + +  I +W ++     +
Sbjct: 80  DKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK--GQCL 135
Query: 246 QELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS-----------TSNHDE 289
             L GH  W   V   P          I+SAG D  V  W ++            SN + 
Sbjct: 136 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 290 L---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSSREPWIFAS------ 332
           L   P  +L+ S  +    +L + +          +D V+ LA+S    W+ A+      
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK 255
Query: 333 -LSYDGRVVVESVKP 346
             S D + +V+ ++P
Sbjct: 256 VFSLDPQYLVDDLRP 270

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
           L+ H G +   L  S+G+ + L+S   +   + W L   ++   V  +   G  H +   
Sbjct: 13  LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
                   A++A+ + +++ WD+ + G+T      H   V +VD D KK  ++++ + + 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
            I +W ++     +  L GH  W   V   P          I+SAG D  V  W ++   
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
                    SN + L   P  +L+ S  +    +L + +          +D V+ LA+S 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
              W+ A+        S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 43/269 (15%)
Query: 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGG 174
           L+ H G +   L  S+G+ + L+S   +   + W L   ++   V  +   G  H +   
Sbjct: 13  LEGHNGWVTS-LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES 231
                   A++A+ + +++ WD+ + G+T      H   V +VD D KK  ++++ + + 
Sbjct: 72  TLTADGAYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDK 129
Query: 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS--- 283
            I +W ++     +  L GH  W   V   P          I+SAG D  V  W ++   
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 284 --------TSNHDEL---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSS 324
                    SN + L   P  +L+ S  +    +L + +          +D V+ LA+S 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 325 REPWIFAS-------LSYDGRVVVESVKP 346
              W+ A+        S D + +V+ ++P
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP 276

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 130 SSGRHDKLVSIDEENIFL-WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188
           S+G+ + L+S   +   + W L   ++   V  +   G  H +           A++A+ 
Sbjct: 26  SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 189 ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245
           + +++ WD+ + G+T      H   V +VD D KK  ++++ + +  I +W ++     +
Sbjct: 86  DKTLRLWDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK--GQCL 141
Query: 246 QELPGHTHWTWAVCCNPEYDG-----FILSAGTDSTVNLWLVS-----------TSNHDE 289
             L GH  W   V   P          I+SAG D  V  W ++            SN + 
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 290 L---PSESLVESPNQRANSLLNSYS--------DYEDSVYGLAWSSREPWIFAS------ 332
           L   P  +L+ S  +    +L + +          +D V+ LA+S    W+ A+      
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIK 261
Query: 333 -LSYDGRVVVESVKP 346
             S D + +V+ ++P
Sbjct: 262 VFSLDPQYLVDDLRP 276

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           E++   +AH   I  +    +  +  L   D+  + LW+ +    N     +   G  H+
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
           +   A++P D +  A+ C + +V+ W L       ++     R V+Y        K  ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
           TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W  ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
           E++   +AH   I  +    +  +  L   D+  + LW+ +    N     +   G  H+
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWE----NNWALEQTFEGHEHF 142
Query: 171 LSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKKKHLLV 225
           +   A++P D +  A+ C + +V+ W L       ++     R V+Y        K  ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284
           TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W  ST
Sbjct: 203 TASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
           G  H++   A++P D +  A+ C + +V+ W L       ++     R V+Y        
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           K  ++TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVSTSNHDELPSESLVES------PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334
             ST   ++  +  L  S      P  R N +    S +++    L+  + EP +  SL 
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA---SGFDNGFTVLSLGNDEPTL--SLD 310
Query: 335 YDGRVV 340
             G++V
Sbjct: 311 PVGKLV 316

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAHVRNVDY----DTKK 220
           G  H++   A++P D +  A+ C + +V+ W L       ++     R V+Y        
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
           K  ++TA+D+  I +WD +  K+ +  L GH         +P     I+S   D T+ +W
Sbjct: 198 KPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 281 LVSTSNHDELPSESLVES------PNQRANSLLNSYSD 312
             ST   ++  +  L  S      P  R N + + + +
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.16
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.02
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.92
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.78
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.75
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.67
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.65
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.63
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.63
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.55
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.49
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.3
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.26
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.1
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.05
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.89
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.81
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.55
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.61
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.51
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.49
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.3
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.24
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.02
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.84
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.02
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.91
3ott_A	758	Two-component system sensor histidine kinase; beta	94.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.55
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.46
3ott_A	758	Two-component system sensor histidine kinase; beta	92.66
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.87
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.57
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.38
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.38
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.47
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.3
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.14
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.84
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	81.73
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	80.48

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.5e-45  Score=318.97  Aligned_cols=280  Identities=16%  Similarity=0.298  Sum_probs=243.6

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.++|+...++.|+    .++.|.+|++.....   ...+.+|.+.|.+++|+|+++.|+++    +.|++|++
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s----~Dg~i~vwd~~~~~~---~~~l~~h~~~V~~v~~~~~~~~l~sg----s~D~~i~i  176 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASC----SADMTIKL  176 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEE----ETTSCCCE
T ss_pred             CCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcE---EEEEeccCCcEEEEEEcCCCCEEEEE----eCCCeEEE
Confidence            44566777888887777764    588999999876432   35677899999999999999888775    79999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||+.         ..+.+..+.+|...|.+++|+|++.. +++++.|++|++||+.++.....     ..+|...+.++.
T Consensus       177 wd~~---------~~~~~~~~~~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~-----~~~h~~~v~~~~  241 (410)
T 1vyh_C          177 WDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKT-----FTGHREWVRMVR  241 (410)
T ss_dssp             EETT---------SSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEE-----EECCSSCEEEEE
T ss_pred             EeCC---------CCceeEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEE-----EeCCCccEEEEE
Confidence            9998         66788889999999999999999984 67778999999999987543322     235777899999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC--------------------CCcEEEEecCCCe
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK--------------------KKHLLVTAADESG  232 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~--------------------~~~~l~~~~~dg~  232 (351)
                      |+|++..+++++.|+.|++||+++++....+. .|   |.+++|+|+                    +. ++++|+.|+.
T Consensus       242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~  319 (410)
T 1vyh_C          242 PNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKT  319 (410)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCe
Confidence            99999999999999999999999988777765 34   999999997                    44 7999999999


Q ss_pred             EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      |++||+++ +.++..+.+|...|.+++|+|++ .+|++++.|+.|++||+..                   ++++..+.+
T Consensus       320 i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~-------------------~~~~~~~~~  378 (410)
T 1vyh_C          320 IKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN-------------------KRCMKTLNA  378 (410)
T ss_dssp             EEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT-------------------SCCCEEEEC
T ss_pred             EEEEECCC-CceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------------------CceEEEEcC
Confidence            99999997 77889999999999999999999 9999999999999999988                   888999999


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |...|++++|+|+++ +|++++.|+.|++|+++
T Consensus       379 h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          379 HEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred             CCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence            999999999999998 89999999999999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=306.54  Aligned_cols=283  Identities=16%  Similarity=0.289  Sum_probs=240.9

Q ss_pred             ceeEeeeecCCCC----cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018697           15 QARCISDVKADTD----HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (351)
Q Consensus        15 ~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d   90 (351)
                      ....|..+.+.++    ...++.|+    .++.+++|++..... .....+.+|...|.+++|+|++..++++    +.|
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs----~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~----s~D  101 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGS----LDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASS----SLD  101 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEE----TTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEE----ETT
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEc----CCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEE----eCC
Confidence            3445555665543    34566554    689999999876432 2334578999999999999999888775    799


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      ++|++||+.         ..+.+..+..|...+.+++|+|+++. +++++.|+.|++|++.++.....+     ..+...
T Consensus       102 ~~i~lWd~~---------~~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~~  166 (321)
T 3ow8_A          102 AHIRLWDLE---------NGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSL-----DTRGKF  166 (321)
T ss_dssp             SEEEEEETT---------TTEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEE-----ECSSSC
T ss_pred             CcEEEEECC---------CCCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEe-----cCCCce
Confidence            999999998         67888888899999999999999994 667788999999999875443222     234558


Q ss_pred             eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      +.+++|+|++++|++++.|+.|++||+++++.+..+. +|   |.+++|+|+++ +|++|+.|+.|++||++. ...+..
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~-~~~~~~  243 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQH-ANLAGT  243 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTT-CCEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCC-cceeEE
Confidence            9999999999999999999999999999988877776 44   99999999998 899999999999999997 667888


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                      +.+|...|.+++|+|++ .+|++++.|++|++||+++                   ++++.++.+|...|++++|+|+++
T Consensus       244 ~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~-------------------~~~~~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          244 LSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT-------------------RTCVHTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC-------------------CEEEEEEcCCCCcEEEEEECCCCC
Confidence            99999999999999999 9999999999999999998                   889999999999999999999998


Q ss_pred             ceEEEeeeCCeEEEeecC
Q 018697          328 WIFASLSYDGRVVVESVK  345 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~  345 (351)
                       +|++++.|+.|++||++
T Consensus       304 -~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          304 -KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -EEEEEETTCCEEEEECC
T ss_pred             -EEEEEeCCCeEEEEeCC
Confidence             89999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=308.40  Aligned_cols=293  Identities=15%  Similarity=0.196  Sum_probs=223.6

Q ss_pred             eEeeeecCCCCcceEEEeeeeeC--CCCEEEEEEeCCCC-CeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLK--EENEVHLLRLSSGG-TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~--~~~~i~~~~~~~~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i   93 (351)
                      +.+..+.+++++..++.++....  -+..+..+.-.... ..........|+..|.+++|+|++ .|+++    +.|++|
T Consensus        31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~----s~dg~v  105 (344)
T 4gqb_B           31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA----SDSGAV  105 (344)
T ss_dssp             SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE----ETTSEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE----ECCCEE
Confidence            45778888999887765541100  01222222211100 011112234577889999999985 56654    689999


Q ss_pred             EEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceee
Q 018697           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (351)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (351)
                      +|||+...     .........+.+|.+.|++++|+|+++. +++++.|++|++||+.++....     ...+|...|.+
T Consensus       106 ~lWd~~~~-----~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~~-----~~~~h~~~V~~  174 (344)
T 4gqb_B          106 ELWELDEN-----ETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVLS-----SYRAHAAQVTC  174 (344)
T ss_dssp             EEEEECTT-----SSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEE
T ss_pred             EEEeccCC-----CceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE-----EEcCcCCceEE
Confidence            99999821     0011222345689999999999999984 6677899999999998653322     23467889999


Q ss_pred             eEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecc---e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          174 GAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       174 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      ++|+|++. .+++++.|+.|++||+++++....+...   + +.+++|+|++..++++|+.|+.|++||+++ .+++..+
T Consensus       175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~  253 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSS  253 (344)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEE
T ss_pred             EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEE
Confidence            99999986 4678899999999999999877766422   2 899999998776899999999999999997 6789999


Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (351)
                      .+|...|++++|+|++..+|++|+.|++|+|||++.                   +++ ..+.+|...|++++|+|+++.
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------------------~~~-~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------------------SEL-FRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-------------------CEE-EEECCCSSCEEEEEECSSSTT
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------------CcE-EEEcCCCCCEEEEEEeCCCCe
Confidence            999999999999999867899999999999999987                   554 456799999999999999987


Q ss_pred             eEEEeeeCCeEEEeecCc
Q 018697          329 IFASLSYDGRVVVESVKP  346 (351)
Q Consensus       329 ~l~s~~~dg~v~vw~~~~  346 (351)
                      +|++++.|++|++|++++
T Consensus       314 llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EEEEEETTSCEEEEECCC
T ss_pred             EEEEEcCCCeEEEEECCC
Confidence            889999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.9e-44  Score=309.37  Aligned_cols=294  Identities=15%  Similarity=0.201  Sum_probs=227.6

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeC--CCCEEEEEEeCCCCC-eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLK--EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~   92 (351)
                      .+.|..+.++|++..++.|+....  -++.+++|+...... ........+|...|.+++|+|++..+ ++    +.|++
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~----s~dg~  116 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VA----SDSGA  116 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EE----ETTSC
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EE----ECCCE
Confidence            456888999999998888753111  156777776554321 11223456799999999999987554 43    57899


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      |+|||+.....     .........+|...|++++|+|+++. +++++.|+.|++||+.++....     ...+|...|.
T Consensus       117 v~lWd~~~~~~-----~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~-----~~~~h~~~v~  185 (357)
T 4g56_B          117 VELWEILEKES-----LLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLK-----SYNAHSSEVN  185 (357)
T ss_dssp             EEEC-------------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEE
T ss_pred             EEEeeccccce-----eEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE-----EEcCCCCCEE
Confidence            99999873100     01112334589999999999999984 6677899999999998643322     2235777999


Q ss_pred             eeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeecc-e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          173 GGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       173 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      +++|+|+++ .+++++.|+.|++||+++++....+... +   +.+++|+|++..+|++|+.|+.|++||+++ .+++..
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~  264 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQT  264 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEE
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEE
Confidence            999999886 6778899999999999998876655422 2   999999999777899999999999999997 668899


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC-CC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-RE  326 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  326 (351)
                      +.+|...|++++|+|++..+|++++.|++|+|||++.                   ++++..+ +|...|++++|+| ++
T Consensus       265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-------------------~~~~~~~-~H~~~V~~vafsP~d~  324 (357)
T 4g56_B          265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-------------------SEVFRDL-SHRDFVTGVAWSPLDH  324 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-------------------CEEEEEC-CCSSCEEEEEECSSST
T ss_pred             EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-------------------CcEeEEC-CCCCCEEEEEEeCCCC
Confidence            9999999999999999867899999999999999998                   6666554 7999999999999 56


Q ss_pred             CceEEEeeeCCeEEEeecCcc
Q 018697          327 PWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      . +|++++.||.|++|+++..
T Consensus       325 ~-~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          325 S-KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             T-EEEEEETTSCEEEEECC--
T ss_pred             C-EEEEEcCCCeEEEEECCCC
Confidence            6 8999999999999999754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-43  Score=297.69  Aligned_cols=250  Identities=15%  Similarity=0.231  Sum_probs=214.9

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      .+.+.+|.+.|.+++|+|+++.|+++    +.|+.|++||+.         +...+..+..|..+|.+++|+|+++. ++
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~----~~dg~v~lWd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~   71 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTT----LYSGRVELWNYE---------TQVEVRSIQVTETPVRAGKFIARKNW-II   71 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEE----ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEEEGGGTE-EE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEE----cCCCcEEEEECC---------CCceeEEeeccCCcEEEEEEeCCCCE-EE
Confidence            35677899999999999999998885    689999999998         66788899999999999999999984 77


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.|+.|++||+.++.....     ..+|...|.+++|+|++++|++++.|+.|++||++++........+|   |.++
T Consensus        72 s~s~d~~i~vwd~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGEKVVD-----FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             EEETTSEEEEEETTTCCEEEE-----EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             EECCCCEEEEEECCCCcEEEE-----EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence            778999999999987654332     23577799999999999999999999999999999875544333355   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecC--CCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      +|+|.+..+|++|+.|++|++||++... +...+ ..|...+..+.|+|  ++ .+|++++.|++|++||++.       
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~-------  217 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT-------  217 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSS-CSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTT-------
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCC-ccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCC-------
Confidence            9999544489999999999999998744 44444 46678899999987  55 7999999999999999998       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                                  ++++.++.+|...|.+++|+|+++ +|++++.||.|++||+.+..
T Consensus       218 ------------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          218 ------------KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             ------------TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC
T ss_pred             ------------CccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc
Confidence                        889999999999999999999998 89999999999999987643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-43  Score=300.23  Aligned_cols=300  Identities=15%  Similarity=0.247  Sum_probs=233.4

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+..+.++|++..++.|.    .++.|++|++.............+|...|.+++|+|+++.|+++    +.|+++++|+
T Consensus        18 ~v~~l~~sp~g~~las~~----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----s~D~~v~iw~   89 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCG----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA----SFDATTCIWK   89 (345)
T ss_dssp             CEEEEEECTTSSCEEEEE----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEc----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE----ECCCcEEEEE
Confidence            566778889998888774    68999999987653222223346899999999999999988885    7999999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      +..       ...+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+.+......  .....+|...|.+++|+
T Consensus        90 ~~~-------~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           90 KNQ-------DDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYEC--VSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             ECC-------C-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEE--EEEECCCCSCEEEEEEC
T ss_pred             ccC-------CCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEE--EEEecCcCCCeEEEEEC
Confidence            872       234667889999999999999999983 66778999999999986433221  12234677799999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcC--ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc---------
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA---------  243 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------  243 (351)
                      |++++|++++.|+.|++||++.++..  ..+. +|   |.+++|+|+++ +|++++.|++|++||......         
T Consensus       160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~  237 (345)
T 3fm0_A          160 PSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGS  237 (345)
T ss_dssp             SSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred             CCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeecc
Confidence            99999999999999999999876532  3343 44   99999999998 899999999999999754221         


Q ss_pred             -----ceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceE
Q 018697          244 -----PIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (351)
Q Consensus       244 -----~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (351)
                           ++..+.+ |...|.+++|+|++ ..|++++.|+.|++|+.........+.          .........+|...|
T Consensus       238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~----------~~~~~~~~~~h~~~V  306 (345)
T 3fm0_A          238 DPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPT----------FSLTAHLHQAHSQDV  306 (345)
T ss_dssp             -CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCC----------EEEEEEETTSSSSCE
T ss_pred             CCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceee----------EEEEeeecccccCcE
Confidence                 2334444 88899999999999 899999999999999987621110000          001122346799999


Q ss_pred             EEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          318 YGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      ++++|+|+++.+|++++.||.|++|++.+..
T Consensus       307 ~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          307 NCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             eEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            9999999986589999999999999997643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.5e-43  Score=293.59  Aligned_cols=284  Identities=17%  Similarity=0.244  Sum_probs=240.7

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...|..+.++|+...++.|.    .++.+++|++...   .....+..|...|.+++|+|+++.|+++    +.|+.|+
T Consensus        12 h~~~V~~~~fsp~~~~l~s~~----~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~----s~d~~i~   80 (304)
T 2ynn_A           12 RSDRVKGIDFHPTEPWVLTTL----YSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVG----SDDFRIR   80 (304)
T ss_dssp             ECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEE----ETTSEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEE----CCCCEEE
Confidence            445688889999998888775    6899999998753   2346677899999999999999998885    7999999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +||+.         +.+.+..+.+|...|.+++|+|+++. +++++.|++|++||+.++....    ....+|...|.++
T Consensus        81 vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~----~~~~~h~~~v~~v  146 (304)
T 2ynn_A           81 VFNYN---------TGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALE----QTFEGHEHFVMCV  146 (304)
T ss_dssp             EEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEE----EEECCCCSCEEEE
T ss_pred             EEECC---------CCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchh----hhhcccCCcEEEE
Confidence            99998         67788899999999999999999984 6777999999999998643322    2234677799999


Q ss_pred             EECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC--CCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          175 AWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       175 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      +|+| ++..|++++.|+.|++||++++.....+...+   +..++|+|  ++. ++++|+.|++|++||+++ .+++..+
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~-~~~~~~~  224 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT-KSCVATL  224 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT-TEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC-Cccceee
Confidence            9999 56789999999999999999887776666444   88888887  565 899999999999999997 7789999


Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (351)
                      .+|...|.+++|+|++ .+|++++.|++|++||+++                   .+++..+..|...+++++|+|++..
T Consensus       225 ~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST-------------------YKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT-------------------CCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             CCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCC-------------------CceeeeccCCCccEEEEEECCCCCc
Confidence            9999999999999999 8999999999999999998                   8889999999999999999998864


Q ss_pred             e-EEEeeeCCeEEEeecCc
Q 018697          329 I-FASLSYDGRVVVESVKP  346 (351)
Q Consensus       329 ~-l~s~~~dg~v~vw~~~~  346 (351)
                      . +++++ |..+.+|++..
T Consensus       285 ~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          285 NYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             GCEEEEE-TTEEEEEECC-
T ss_pred             eEEEEec-CCceEEEEecc
Confidence            4 55555 56688888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-42  Score=297.81  Aligned_cols=282  Identities=14%  Similarity=0.215  Sum_probs=238.7

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...+..+.++++...++.|+    .++.|++|++....   ....+..|...|.+++|+|+++.|+++    +.|+.|+
T Consensus        54 H~~~v~~~~~s~d~~~l~s~s----~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d~~v~  122 (340)
T 1got_B           54 HLAKIYAMHWGTDSRLLLSAS----QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACG----GLDNICS  122 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTSSEEEEE----ETTCEEE
T ss_pred             CCCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCC---cceEeecCCccEEEEEECCCCCEEEEE----eCCCeEE
Confidence            345677788888888888764    68999999987643   335567899999999999999988875    6899999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|++...     .........+.+|...|.++.|++++.  +++++.|+.|++||+.++....     ...+|...|.++
T Consensus       123 iw~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~-----~~~~h~~~v~~~  190 (340)
T 1got_B          123 IYNLKTR-----EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTT-----TFTGHTGDVMSL  190 (340)
T ss_dssp             EEETTTC-----SBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEE
T ss_pred             EEECccC-----CCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEE-----EEcCCCCceEEE
Confidence            9998731     112355667889999999999999887  7888999999999998654322     233577799999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-  250 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  250 (351)
                      +|+|+++++++++.|+.|++||++++.....+. +|   |.+++|+|++. +|++|+.|+.|++||++. .+.+..+.. 
T Consensus       191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~~~~  267 (340)
T 1got_B          191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRA-DQELMTYSHD  267 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCT
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCC-CcEEEEEccC
Confidence            999999999999999999999999988877776 44   99999999998 899999999999999987 555555542 


Q ss_pred             -CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018697          251 -HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       251 -~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (351)
                       +...|.+++|+|++ .+|++|+.|+.|++||+..                   .+.+..+.+|...|.+++|+|++. +
T Consensus       268 ~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~s~dg~-~  326 (340)
T 1got_B          268 NIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK-------------------ADRAGVLAGHDNRVSCLGVTDDGM-A  326 (340)
T ss_dssp             TCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEEEECTTSS-C
T ss_pred             CcccceEEEEECCCC-CEEEEECCCCeEEEEEccc-------------------CcEeeEeecCCCcEEEEEEcCCCC-E
Confidence             33579999999999 9999999999999999998                   788889999999999999999998 8


Q ss_pred             EEEeeeCCeEEEee
Q 018697          330 FASLSYDGRVVVES  343 (351)
Q Consensus       330 l~s~~~dg~v~vw~  343 (351)
                      |++++.|+.|++||
T Consensus       327 l~s~s~D~~i~iWd  340 (340)
T 1got_B          327 VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCccEEecC
Confidence            99999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=294.32  Aligned_cols=266  Identities=17%  Similarity=0.213  Sum_probs=216.6

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC----CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      +..++.........+..+...+|.+.|++++|+|+    +..|++    ++.|++|+||++..       ........+.
T Consensus         9 ~~~~~~~~~~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~t----gs~D~~v~vW~~~~-------~~~~~~~~l~   77 (321)
T 3ow8_A            9 SRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVT----GSLDDLVKVWKWRD-------ERLDLQWSLE   77 (321)
T ss_dssp             ------------CEEEEEETTSSSSCEEEEEEC-------CEEEE----EETTSCEEEEEEET-------TEEEEEEEEC
T ss_pred             chhhHHHhhhhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEE----EcCCCCEEEEECCC-------CCeeeeeeec
Confidence            33344343333334555677899999999999985    345655    47999999999872       2334556788


Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      +|...|.+++|++++. ++++++.|++|++||+.++.....+     ..+...+.+++|+|++++|++++.++.|++||+
T Consensus        78 gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           78 GHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSI-----DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEE-----ECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             cCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEE-----eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            9999999999999998 3666689999999999875433322     234457889999999999999999999999999


Q ss_pred             ccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018697          198 RSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       198 ~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                      ++++....+....  +.+++|+|+++ +|++|+.|+.|++||+++ ++.+..+.+|..+|.+++|+|++ .+|++++.|+
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg  228 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDG  228 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTS-CEEEEECTTS
T ss_pred             CCCceeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCC
Confidence            9988777666333  99999999998 899999999999999997 77888999999999999999999 9999999999


Q ss_pred             eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .|++||++.                   ..++..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+.
T Consensus       229 ~i~iwd~~~-------------------~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          229 YIKIYDVQH-------------------ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred             eEEEEECCC-------------------cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC
Confidence            999999998                   788889999999999999999998 8999999999999999753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-42  Score=301.58  Aligned_cols=298  Identities=12%  Similarity=0.200  Sum_probs=241.5

Q ss_pred             ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018697           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~   92 (351)
                      ..+...|..+.++|+...++.|+    .++.|++|++....   ....+..|...|.+++|+|+++.|++    ++.|+.
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s----~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las----~~~d~~  131 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSAS----QDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVAC----GGLDSA  131 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEE----CCSSSC
T ss_pred             cccccEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEE----eeCCCc
Confidence            33445678888899988888775    68999999986542   34567789999999999999998887    489999


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      +++|++......  .........+.+|.+.|.++.|+|++...+++++.|++|++||+.++............+|...|.
T Consensus       132 v~iw~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          132 CSIFNLSSQADR--DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             CEEEECCCCSSC--CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             EEEEECCCCccc--cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            999998732111  112234556789999999999999876658888999999999999765544333333356788999


Q ss_pred             eeEECC-CCCcEEEeecCCeEEEEEcccC-CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE
Q 018697          173 GGAWDP-HDVNAVAATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       173 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  247 (351)
                      +++|++ ++..+++++.|+.|++||++.. +.+..+. +|   |.+++|+|++. +|++|+.|++|++||+++ +..+..
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~-~~~~~~  286 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRT-GHQLQV  286 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTT-TEEEEE
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCC-CcEEEE
Confidence            999987 7788999999999999999854 4555554 55   99999999998 899999999999999997 656666


Q ss_pred             eeCCC-------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee----ccccce
Q 018697          248 LPGHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SDYEDS  316 (351)
Q Consensus       248 ~~~~~-------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  316 (351)
                      +..+.       ..|++++|+|+| .+|++|+.||.|++||...                   ++.+..+    .+|...
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-------------------~~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLL-------------------AEMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTT-------------------CCEEEEECCSCSSCCCC
T ss_pred             ecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCC-------------------CceEEEEecccCCCCCc
Confidence            65433       348999999999 9999999999999999987                   5665555    679999


Q ss_pred             EEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          317 VYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       317 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |++++|+|++. +|++|+.|+.|++|++...
T Consensus       347 v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          347 ISCLGLSSDGS-ALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCEEEECSSSS-EEEEECTTSCEEEEECCSS
T ss_pred             eEEEEECCCCC-EEEEeeCCCCEEEEecCCC
Confidence            99999999999 8999999999999999754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.4e-42  Score=303.43  Aligned_cols=329  Identities=19%  Similarity=0.306  Sum_probs=252.6

Q ss_pred             eccccceeEeeeecCCC-------CcceEEEeeeeeCCCCEEEEEEeC------------------------CCCCeEEE
Q 018697           10 YGLKYQARCISDVKADT-------DHTSFLTGTLSLKEENEVHLLRLS------------------------SGGTELIC   58 (351)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~i~~~~~~------------------------~~~~~~~~   58 (351)
                      +.+++++-.+.+++..+       ..+++++||++....+.|+++++.                        ...+.+..
T Consensus        42 ~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  121 (430)
T 2xyi_A           42 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEI  121 (430)
T ss_dssp             EECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEE
T ss_pred             cCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEE
Confidence            35555665566655432       137899999988888999998765                        12234555


Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC-CCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL-NSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      .....|.+.|++++|+|++..++++   ++.++.|++|++....... ......++..+.+|...|.+++|+|++..+++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat---~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIAT---KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEE---ECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEE---ECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            6778999999999999985555555   4789999999998321111 01125677888999999999999999986577


Q ss_pred             EEecCCcEEEEEcCCCCCCcccc--cccccCcccceeeeEECC-CCCcEEEeecCCeEEEEEcccC---CcCceeecce-
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQ--SKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH-  210 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~-  210 (351)
                      +++.||.|++|++..........  .....+|...|.+++|+| ++..+++++.|+.|++||++++   +....+. .| 
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~  277 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHT  277 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCC
Confidence            78889999999998643322211  122346777999999999 5667778899999999999987   3444554 34 


Q ss_pred             --eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                        |.+++|+|++++++++|+.||.|++||++....++..+..|...|.+++|+|+++.+|++++.|+.|++||+......
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence              999999999987899999999999999998677899999999999999999999668999999999999999873222


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ........     ...+++..+.+|...|++++|+|+++++|++++.||.|++|++.+.
T Consensus       358 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          358 QSTEDAED-----GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCHHHHHH-----CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cCcccccc-----CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            11110000     0135677778899999999999999888999999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.6e-42  Score=301.97  Aligned_cols=247  Identities=20%  Similarity=0.280  Sum_probs=219.9

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|++++|+|++..|+++    +.|++|+|||+.         +.+....+.+|...|.+++|+|++. ++++
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~----s~Dg~i~vwd~~---------~~~~~~~l~~h~~~V~~v~~~~~~~-~l~s  167 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSA----SEDATIKVWDYE---------TGDFERTLKGHTDSVQDISFDHSGK-LLAS  167 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEE----ESSSCEEEEETT---------TCCCCEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCcEEEEEeccCCcEEEEEEcCCCC-EEEE
Confidence            3467899999999999999888885    799999999998         6677889999999999999999998 3677


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      ++.|++|++||+.+.....     ...+|...|.+++|+|+++.+++++.|+.|++||++++.++..+. +|   +.+++
T Consensus       168 gs~D~~i~iwd~~~~~~~~-----~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~  241 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECIR-----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR  241 (410)
T ss_dssp             EETTSCCCEEETTSSCEEE-----CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE
T ss_pred             EeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEE
Confidence            7899999999998643222     223677799999999999999999999999999999998887776 44   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC-------------------CCeEEEeeCCCe
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY-------------------DGFILSAGTDST  276 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~s~~~dg~  276 (351)
                      ++|++. ++++|+.|+.|++||+++ ......+..|...|.+++|+|++                   ..+|++|+.|+.
T Consensus       242 ~~~~g~-~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          242 PNQDGT-LIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             ECCCCC-EEEEEcCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            999998 899999999999999997 66788899999999999999962                   168999999999


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |++||++.                   +.++..+.+|...|++++|+|+++ +|++++.|+.|++||+.+.
T Consensus       320 i~iwd~~~-------------------~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          320 IKMWDVST-------------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EEEEETTT-------------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTS
T ss_pred             EEEEECCC-------------------CceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Confidence            99999998                   888999999999999999999998 8999999999999998653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.7e-41  Score=289.13  Aligned_cols=286  Identities=15%  Similarity=0.171  Sum_probs=237.2

Q ss_pred             cceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceE
Q 018697           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i   93 (351)
                      .+...|..+.++++..+++.|+    .++.+.+|+.....   ....+..|...|.+++|+|++..++++    +.|+.+
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s----~Dg~v~vWd~~~~~---~~~~~~~~~~~v~~~~~sp~g~~lasg----~~d~~i  130 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSS----QDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAPSGCAIACG----GLDNKC  130 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCC---EEEEEECSSSCCCEEEECTTSSEEEEE----STTSEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEe----CCCeEEEEECCCCC---cceEEecCCCCEEEEEECCCCCEEEEe----eCCCCE
Confidence            3445677888889988888774    68999999976643   234556788999999999999988875    899999


Q ss_pred             EEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceee
Q 018697           94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG  173 (351)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  173 (351)
                      ++|++.....   .........+..|...|.+++|+|++.. +++++.|++|++||+.++.....     ..+|...|.+
T Consensus       131 ~v~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~-----~~~h~~~v~~  201 (354)
T 2pbi_B          131 SVYPLTFDKN---ENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQS-----FHGHGADVLC  201 (354)
T ss_dssp             EEEECCCCTT---CCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEE-----EECCSSCEEE
T ss_pred             EEEEEecccc---ccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEE-----EcCCCCCeEE
Confidence            9999863211   1122445667789999999999999984 77778999999999987543322     2356778999


Q ss_pred             eEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          174 GAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       174 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      ++|+|  +++.|++++.|+.|++||+++++++..+. .|   |.+++|+|++. +|++|+.|++|++||++. .+.+..+
T Consensus       202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~-~~~~~~~  278 (354)
T 2pbi_B          202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGD-AFASGSDDATCRLYDLRA-DREVAIY  278 (354)
T ss_dssp             EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCC-CcEEEEE
Confidence            99987  46789999999999999999998877776 44   99999999998 899999999999999987 5455555


Q ss_pred             eCC--CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          249 PGH--THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       249 ~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                      ..+  ...+.+++|+|++ .+|++++.|+.|++||+..                   ++.+..+.+|...|++++|+|++
T Consensus       279 ~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~-------------------~~~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLK-------------------GSRVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             CCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------------------CSEEEEECCCSSCEEEEEECTTS
T ss_pred             cCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCC-------------------CceEEEEECCCCcEEEEEECCCC
Confidence            433  3578999999999 9999999999999999988                   78888899999999999999999


Q ss_pred             CceEEEeeeCCeEEEee
Q 018697          327 PWIFASLSYDGRVVVES  343 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~  343 (351)
                      + +|++++.|+.|++|+
T Consensus       339 ~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 T-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             S-CEEEEETTSEEEEEC
T ss_pred             C-EEEEEcCCCCEEecC
Confidence            9 899999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-41  Score=294.94  Aligned_cols=282  Identities=19%  Similarity=0.275  Sum_probs=229.1

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeec------------------CCcceeeeeeCCCCCc
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFS------------------HPNEIWDLSSCPFDQR   79 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------h~~~v~~i~~~~~~~~   79 (351)
                      .+..+.++|++..++.|.     ++.+.+|++.....   ...+..                  +...|.+++|+|+++.
T Consensus        66 ~V~~v~fspdg~~la~g~-----~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             EEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            455677888888888763     46788888765432   122222                  2235999999999998


Q ss_pred             eEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccc
Q 018697           80 IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV  159 (351)
Q Consensus        80 l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~  159 (351)
                      |+++    +.|+.|++||+.         ..+.+..+.+|...|.+++|+|++.. +++++.|++|++||+.++......
T Consensus       138 l~s~----~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          138 LATG----AEDRLIRIWDIE---------NRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             EEEE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEE----cCCCeEEEEECC---------CCcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEE
Confidence            8885    689999999998         66788889999999999999999984 677789999999999875432222


Q ss_pred             ccccccCcccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceee------cce---eEEEEcCCCCCcEEEEecC
Q 018697          160 QSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIE------HAH---VRNVDYDTKKKHLLVTAAD  229 (351)
Q Consensus       160 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~---v~~~~~~~~~~~~l~~~~~  229 (351)
                      .      +...+.+++|+| +++++++++.|+.|++||+++++.+..+.      .+|   |.+++|+|+++ +|++|+.
T Consensus       204 ~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~  276 (393)
T 1erj_A          204 S------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSL  276 (393)
T ss_dssp             E------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             E------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeC
Confidence            1      234799999999 88999999999999999999887665552      234   99999999998 8999999


Q ss_pred             CCeEEEEecccCC-----------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          230 ESGIHLWDLRMLK-----------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       230 dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                      |+.|++||++...           .+...+.+|...|.+++|+|++ .+|++++.|+.|++||.+.              
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~--------------  341 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS--------------  341 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT--------------
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC--------------
Confidence            9999999997522           2345677899999999999999 9999999999999999998              


Q ss_pred             CcccccccceeeccccceEEEEEeCC------CCCceEEEeeeCCeEEEeecCcccc
Q 018697          299 PNQRANSLLNSYSDYEDSVYGLAWSS------REPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                           ++++..+.+|...|.+++|++      ++. +|++++.||.|++|++++..+
T Consensus       342 -----~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~~p  392 (393)
T 1erj_A          342 -----GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKIAP  392 (393)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC--
T ss_pred             -----CeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECcccccCC
Confidence                 888899999999999999986      566 899999999999999976544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.6e-41  Score=283.13  Aligned_cols=288  Identities=15%  Similarity=0.248  Sum_probs=241.1

Q ss_pred             eeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .+.+..+...+..+.++++...++.|.    .++.+++|++....   ....+.+|...|.+++|+|+++.|+++    +
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~----~   84 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSA----S   84 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE----E
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEE----C
Confidence            344444556788888999988888774    67899999986543   345677899999999999999888885    6


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .|+.|++||+.         ..+.+..+.+|...|.+++|+|++.. +++++.|+.|++||+.++.....     ...|.
T Consensus        85 ~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~-----~~~~~  149 (312)
T 4ery_A           85 DDKTLKIWDVS---------SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-----LPAHS  149 (312)
T ss_dssp             TTSEEEEEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEE-----ECCCS
T ss_pred             CCCEEEEEECC---------CCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEE-----ecCCC
Confidence            89999999998         56788889999999999999999984 67778999999999986543322     23466


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      ..+.+++|+|+++.+++++.|+.|++||+++++.+..+...+   +..++|+|+++ ++++++.|+.|++||+++ .+.+
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~-~~~~  227 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSK-GKCL  227 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTT-TEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCC-CcEE
Confidence            689999999999999999999999999999988776665333   89999999998 799999999999999997 6678


Q ss_pred             eEeeCCCCceeE--EEec-CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018697          246 QELPGHTHWTWA--VCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       246 ~~~~~~~~~v~~--~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (351)
                      ..+.+|...+..  ..++ +++ .+|++|+.|+.|++||++.                   ++.+..+.+|...|.+++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~  287 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQT-------------------KEIVQKLQGHTDVVISTAC  287 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEE
T ss_pred             EEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCC-------------------chhhhhhhccCCcEEEEee
Confidence            888888765433  3344 455 8999999999999999998                   8889999999999999999


Q ss_pred             CCCCCceEEEee--eCCeEEEeecC
Q 018697          323 SSREPWIFASLS--YDGRVVVESVK  345 (351)
Q Consensus       323 ~~~~~~~l~s~~--~dg~v~vw~~~  345 (351)
                      +|+++ ++++++  .|+.|++|+.+
T Consensus       288 ~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             cCcCC-ceEEEEccCCccEEEecCC
Confidence            99998 788886  69999999964

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-41  Score=285.84  Aligned_cols=297  Identities=17%  Similarity=0.275  Sum_probs=216.8

Q ss_pred             ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEee-ec-CCcceeeeeeCCCCCceEEEEeecC
Q 018697           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGL-FS-HPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .++.....+..+.++++  .++.|    ..++.|++|++........ ..+ .+ |...|.+++|+|+++.|+++    +
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~----~~D~~i~lw~~~~~~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~----s   77 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATG----STDRKIKLVSVKYDDFTLI-DVLDETAHKKAIRSVAWRPHTSLLAAG----S   77 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEE----ESSSCEEEEECSSSCCEEE-EEECTTCCCSCEEEEEECTTSSEEEEE----E
T ss_pred             eeccCCCceeeeccCCC--EEEEE----cCCCEEEEEEecCCCeEEE-EEEecCCccCCEEEEEECCCCCEEEEE----e
Confidence            34444455666666666  55555    3689999999976433332 233 34 99999999999999888875    6


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .|++|+||++.....  .....+.+..+.+|...|.+++|+|+++. +++++.|++|++||+......... .....+|.
T Consensus        78 ~D~~v~iw~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~-~~~~~~h~  153 (330)
T 2hes_X           78 FDSTVSIWAKEESAD--RTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYEC-ISVLQEHS  153 (330)
T ss_dssp             TTSCEEEEEC---------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEE-EEEECCCS
T ss_pred             CCCcEEEEEcccCcC--ccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEE-EEEeccCC
Confidence            899999999852100  00124567788899999999999999984 667789999999999643222111 12234677


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccC--CcCceeecce---eEEEEcCCC--CCcEEEEecCCCeEEEEecccC
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHAH---VRNVDYDTK--KKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~---v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      ..|.+++|+|++.+|++++.|+.|++||++++  +++..+. +|   |.+++|+|+  +. ++++|+.|++|++||++..
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCC
Confidence            89999999999999999999999999999876  3444554 45   999999998  54 7999999999999999752


Q ss_pred             C-------cceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc--ccce-ee
Q 018697          242 K-------APIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN--SLLN-SY  310 (351)
Q Consensus       242 ~-------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~  310 (351)
                      .       .....+.. |...|.+++|+++  .+|++++.|+.|++||...                   +  +.+. ..
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~-------------------~~~~~~~~~~  290 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVD-------------------GEWKVFAKRA  290 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEET-------------------TEEEEEEEES
T ss_pred             CccccceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCC-------------------CceEEEeccc
Confidence            1       23344444 8999999999965  4899999999999999876                   3  2232 23


Q ss_pred             ccccc-eEEEEEeCC--CCCceEEEeeeCCeEEEeecCc
Q 018697          311 SDYED-SVYGLAWSS--REPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       311 ~~~~~-~v~~~~~~~--~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+|.. .|.+++|+|  ++. +|++++.||.|++|++++
T Consensus       291 ~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          291 LCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CTTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             cccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence            56776 899999999  566 899999999999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-40  Score=283.31  Aligned_cols=298  Identities=16%  Similarity=0.261  Sum_probs=223.7

Q ss_pred             ceeEeeeecC-----CC-CcceEEEeeeeeCCCCEEEEEEeCCCCC----eEEEEeeecCCcceeeeeeCCCCCceEEEE
Q 018697           15 QARCISDVKA-----DT-DHTSFLTGTLSLKEENEVHLLRLSSGGT----ELICEGLFSHPNEIWDLSSCPFDQRIFSTV   84 (351)
Q Consensus        15 ~~~~~~~~~~-----~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~   84 (351)
                      +...|..+.+     .+ +...++.|+    .++.|++|++.....    ......+.+|...|.+++|+|++..++++ 
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~-   94 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGS----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-   94 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEE----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE-
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEc----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE-
Confidence            3445555554     44 666677664    689999999976432    23446678999999999999999888875 


Q ss_pred             eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018697           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                         +.|++|++||+.         +.+.+..+.+|...|.+++|+|+++. +++++.|+.|++||+... ..  ......
T Consensus        95 ---s~D~~v~lwd~~---------~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~-~~--~~~~~~  158 (343)
T 2xzm_R           95 ---SWDKTLRLWDLR---------TGTTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGE-CK--FSSAEK  158 (343)
T ss_dssp             ---ETTSEEEEEETT---------SSCEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSC-EE--EECCTT
T ss_pred             ---cCCCcEEEEECC---------CCcEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCC-ce--eeeecc
Confidence               799999999998         56788889999999999999999984 677789999999999732 11  111222


Q ss_pred             cCcccceeeeEECCCC----------CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCC
Q 018697          165 SGMLHYLSGGAWDPHD----------VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       165 ~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg  231 (351)
                      .+|...+.+++|+|++          .++++++.|+.|++||.. .+....+. .|   |.+++|+|+++ +|++|+.|+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~h~~~v~~~~~s~~g~-~l~sgs~dg  235 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-AHESNVNHLSISPNGK-YIATGGKDK  235 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTC
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-CccccceEEEECCCCC-EEEEEcCCC
Confidence            3567789999999987          689999999999999943 34444444 44   99999999998 899999999


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      .|++||++....+...+. +...|.+++|+|++ .++++ +.|+.|++||+..........  ....+    ........
T Consensus       236 ~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~~la~-~~d~~v~iw~~~~~~~~~~~~--~~~~~----~~~~~~~~  306 (343)
T 2xzm_R          236 KLLIWDILNLTYPQREFD-AGSTINQIAFNPKL-QWVAV-GTDQGVKIFNLMTQSKAPVCT--IEAEP----ITKAEGQK  306 (343)
T ss_dssp             EEEEEESSCCSSCSEEEE-CSSCEEEEEECSSS-CEEEE-EESSCEEEEESSSCCSCSEEE--CCCCS----GGGBTTBC
T ss_pred             eEEEEECCCCcccceeec-CCCcEEEEEECCCC-CEEEE-ECCCCEEEEEeCCCCCCceEE--eecCc----chhhhhhc
Confidence            999999965455555553 55679999999998 77664 558889999998622110000  00000    00111223


Q ss_pred             cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          312 DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +|...|.+++|+|+++ +|++|+.||.|++|++++
T Consensus       307 ~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCC-eEEEecCCceEEEEEEEc
Confidence            6788899999999999 899999999999999865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.2e-42  Score=292.37  Aligned_cols=255  Identities=18%  Similarity=0.188  Sum_probs=204.3

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc--cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL--YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      .|+..|.+++|+|+|+.|+++     .|+++++||....  ......+..........|...|.+++|+|++.  +++++
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~-----sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~s  100 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGA-----SSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG--ILVAS  100 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEE-----ECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE--EEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEE-----eCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe--EEEEE
Confidence            577889999999999887764     3667777764210  00000011112222335678899999999976  78889


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                      .||+|+|||+.+++.... ......+|...|++++|+|++++|++++.|+.|++||+++++.+..+. +|   |.+++|+
T Consensus       101 ~dg~v~lWd~~~~~~~~~-~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIV-SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEE-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeE-eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEec
Confidence            999999999997654332 223344788899999999999999999999999999999998888777 55   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      |++..+|++++.|++|++||+++ .++...+.  .|...+.+++|+|++..+|++|+.|+.|++||+++           
T Consensus       179 ~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-----------  246 (344)
T 4gqb_B          179 PHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-----------  246 (344)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------
T ss_pred             CCCCCceeeeccccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-----------
Confidence            99977899999999999999997 55666654  45667999999997768999999999999999998           


Q ss_pred             ccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                              ++++.++.+|...|++++|+|++..+|++++.|++|+|||+..
T Consensus       247 --------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          247 --------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             ----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             --------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence                    8899999999999999999999865899999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-40  Score=280.63  Aligned_cols=286  Identities=14%  Similarity=0.234  Sum_probs=231.9

Q ss_pred             ccccceeEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCe--EEEEeeecCCcceeeeeeCCCCCceEEEEeec
Q 018697           11 GLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFST   87 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~   87 (351)
                      .++.+...+..+.++++. ..++.|    ..++.+++|++......  .....+.+|...|.+++|+|++++|+++    
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~----s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~----   83 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSA----SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA----   83 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEE----ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----
T ss_pred             EEccccceEEEEEccCCCccEEEEe----cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE----
Confidence            344556677788888765 455554    36899999998754332  3346678999999999999999998885    


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      +.|++|++||+.         +.+.+..+.+|...|.+++|+|++.. +++++.|++|++||++. ...     ....+|
T Consensus        84 s~D~~v~~wd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~~-~~~-----~~~~~h  147 (319)
T 3frx_A           84 SWDKTLRLWDVA---------TGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTIKG-QCL-----ATLLGH  147 (319)
T ss_dssp             ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSCE-EEEEETTSCEEEEETTS-CEE-----EEECCC
T ss_pred             eCCCEEEEEECC---------CCCeeEEEccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCC-CeE-----EEEecc
Confidence            799999999998         67888899999999999999999983 67779999999999973 111     122357


Q ss_pred             ccceeeeEECCCC------CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEec
Q 018697          168 LHYLSGGAWDPHD------VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       168 ~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                      ...+.++.|.|..      ..+++++.|+.|++||+++.+....+. +|   |.+++|+|+++ +|++|+.|+.|++||+
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGT-LIASAGKDGEIMLWNL  225 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSS-EEEEEETTCEEEEEET
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEC
Confidence            7789999999854      479999999999999999877666665 44   99999999998 8999999999999999


Q ss_pred             ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee--------
Q 018697          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY--------  310 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  310 (351)
                      +. .+++..+.. ...|.+++|+|++ .+|++++.+ .+++|++..                   ...+..+        
T Consensus       226 ~~-~~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~-------------------~~~~~~~~~~~~~~~  282 (319)
T 3frx_A          226 AA-KKAMYTLSA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDP-------------------QYLVDDLRPEFAGYS  282 (319)
T ss_dssp             TT-TEEEEEEEC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETT-------------------EEEEEEECCCCTTCC
T ss_pred             CC-CcEEEEecC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCc-------------------CeeeeccCccccccc
Confidence            97 667777774 5689999999999 888887755 599999986                   3333332        


Q ss_pred             ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ..|...+.+++|+|+|+ +|++++.|+.|++|++.+
T Consensus       283 ~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             GGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred             cCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence            24566799999999999 899999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-41  Score=290.51  Aligned_cols=256  Identities=19%  Similarity=0.168  Sum_probs=204.9

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecC--CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      ..|+..|.+++|+|||++|+++.....  .|+.|++|+....     .+..........|...|.+++|+|++.  ++++
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~-----~~~~~~~~~~~~~~~~V~~~~~s~d~~--~l~~  111 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG-----APNESLCTAGVQTEAGVTDVAWVSEKG--ILVA  111 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------CGGGCSEEEECSSCEEEEEEETTTE--EEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC-----CcceeEecccCCCCCCEEEEEEcCCCC--EEEE
Confidence            469999999999999999988621000  1778999987621     112233344567899999999999987  7778


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEc
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY  216 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~  216 (351)
                      +.|++|+|||+.+++.... ......+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .|   |.+++|
T Consensus       112 s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~  189 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLV-NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAA  189 (357)
T ss_dssp             ETTSCEEEC--------CC-CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEE
T ss_pred             ECCCEEEEeeccccceeEE-EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEE
Confidence            8899999999987543322 222334678899999999999999999999999999999998887776 44   999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      +|+++.++++++.|+.|++||+++ .+++..+  ..|...+.+++|+|+++.+|++|+.|+.|++||++.          
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~----------  258 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN----------  258 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC----------
T ss_pred             ccCCCceeeeeccCCceEEEECCC-CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC----------
Confidence            999876899999999999999987 4444443  356778999999998768999999999999999998          


Q ss_pred             cccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                               ++++..+.+|...|++++|+|++..+|++++.|++|+|||++.
T Consensus       259 ---------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          259 ---------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             ---------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             ---------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence                     8889999999999999999999866899999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.6e-40  Score=283.07  Aligned_cols=249  Identities=18%  Similarity=0.256  Sum_probs=214.8

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+.+|.+.|.+++|+|+++.|+++    +.|++|++||+.         ..+.+..+..|...|.+++|+|++.. ++
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~----s~Dg~v~iWd~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~  113 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSA----SQDGKLIIWDSY---------TTNKVHAIPLRSSWVMTCAYAPSGNY-VA  113 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTTEEEEEETT---------TCCEEEEEECSSSCEEEEEECTTSSE-EE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEE----eCCCcEEEEECC---------CCCcceEeecCCccEEEEEECCCCCE-EE
Confidence            46678999999999999999988885    799999999988         56778888899999999999999984 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.|+.|++|++.+....... .....+|...+.++.|++++. +++++.|+.|++||+++++....+. +|   |.++
T Consensus       114 s~~~d~~v~iw~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~  190 (340)
T 1got_B          114 CGGLDNICSIYNLKTREGNVRV-SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSL  190 (340)
T ss_dssp             EEETTCEEEEEETTTCSBSCEE-EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEE
T ss_pred             EEeCCCeEEEEECccCCCccee-EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEE
Confidence            7789999999999864332222 223456788999999998765 8899999999999999988877776 44   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                      +|+|+++ ++++|+.|+.|++||+++ ..++..+.+|...|++++|+|++ .+|++++.|++|++||++.          
T Consensus       191 ~~~~~~~-~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~----------  257 (340)
T 1got_B          191 SLAPDTR-LFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRA----------  257 (340)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------
T ss_pred             EECCCCC-EEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCC----------
Confidence            9999998 899999999999999997 66888999999999999999999 9999999999999999997          


Q ss_pred             cccCCcccccccceeec--cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          295 LVESPNQRANSLLNSYS--DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                               .+.+..+.  .+...|.+++|+|+++ +|++++.|+.|++||+.+
T Consensus       258 ---------~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          258 ---------DQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ---------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred             ---------CcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEccc
Confidence                     56555553  2335799999999999 899999999999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-41  Score=294.95  Aligned_cols=303  Identities=18%  Similarity=0.299  Sum_probs=246.4

Q ss_pred             eeEeeeecCCCCcc-eEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697           16 ARCISDVKADTDHT-SFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        16 ~~~~~~~~~~~~~~-~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      ...+..+.++|+.. .++.|+...      ..++.|++|++....... ......|...|.+++|+|+++.|+++    +
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~----~   86 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGA----L   86 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEE----E
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEE----c
Confidence            44677788999876 666664433      578899999988653211 12234689999999999999988885    6


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC----cccccccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN----AQVQSKQS  164 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~~~~~~~  164 (351)
                      .|+.|++|++....     ...+.+..+..|...|.+++|+|++..++++++.|+.|++||+.+....    ........
T Consensus        87 ~dg~v~vw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           87 DNGSLELYSTNEAN-----NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             SSSCEEEECCSSTT-----SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             cCCeEEEeeccccc-----ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            89999999998210     0134777888999999999999994445777788999999999976511    11111223


Q ss_pred             cCcccceeeeEECCC-CCcEEEeecCCeEEEEEcccCCcCceeecc-------e-eEEEEcCCCCCcEEEEecCCC---e
Q 018697          165 SGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEHA-------H-VRNVDYDTKKKHLLVTAADES---G  232 (351)
Q Consensus       165 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~l~~~~~dg---~  232 (351)
                      ..|...+.+++|+|+ +..+++++.|+.|++||+++++.+..+...       . +.+++|+|++..++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            457779999999999 678888999999999999998877766642       2 999999999866899999998   9


Q ss_pred             EEEEecccCCcceeEee-CCCCceeEEEecC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee
Q 018697          233 IHLWDLRMLKAPIQELP-GHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (351)
                      |++||++....++..+. +|...|.+++|+| ++ .+|++++.|+.|++||++.                   ++++..+
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~-------------------~~~~~~~  301 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPES-------------------AEQLSQF  301 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSS-------------------CCEEEEE
T ss_pred             EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCC-------------------Cccceee
Confidence            99999998556788888 8999999999999 77 9999999999999999998                   8889999


Q ss_pred             ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          311 SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       311 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      ..|...|.+++|+|+++.+|++++.|+.|++|++....
T Consensus       302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            99999999999999994499999999999999997643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.1e-40  Score=275.08  Aligned_cols=253  Identities=17%  Similarity=0.283  Sum_probs=202.3

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKL  137 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~  137 (351)
                      .+.+|.+.|++++|+|++++|+++    +.|++|+||++..       ...+.+.++.+|.++|.+++|+++  +. +++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~----s~D~~v~iw~~~~-------~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~   71 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATC----SSDKTIKIFEVEG-------ETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILA   71 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEEBCS-------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEE----eCCCEEEEEecCC-------CCcEEEEEEccccCCeEEEEecCCCcCC-EEE
Confidence            456899999999999999998885    7999999999872       134667889999999999999864  55 466


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcC-ceeecce---e
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKT-NSIEHAH---V  211 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~---v  211 (351)
                      +++.|++|++||+.++.....   ....+|...|.+++|+|+  +..|++++.|+.|++||++++... .....+|   +
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~---~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQI---AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCC---EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             EEcCCCEEEEEEcCCCceEEE---EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            779999999999986432111   122356779999999997  789999999999999999876422 2222244   9


Q ss_pred             EEEEcCCC-------------CCcEEEEecCCCeEEEEecccCCc---ceeEeeCCCCceeEEEecCCC--CCeEEEeeC
Q 018697          212 RNVDYDTK-------------KKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEY--DGFILSAGT  273 (351)
Q Consensus       212 ~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~  273 (351)
                      .+++|+|+             ++ +|++|+.|+.|++||++....   ....+.+|...|.+++|+|++  ..+|++++.
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             ceEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            99999997             34 899999999999999986332   456788999999999999984  379999999


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceee--ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY--SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |++|++||++....                ......+  ..|...|.+++|+|+++ +|++++.|+.|++|+..
T Consensus       228 D~~v~iWd~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          228 DRTCIIWTQDNEQG----------------PWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCEEEEEESSTTS----------------CCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred             CCcEEEEEeCCCCC----------------ccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence            99999999976110                0011122  46778899999999999 89999999999999976

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=280.06  Aligned_cols=314  Identities=16%  Similarity=0.194  Sum_probs=235.0

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC---CCceEEEEeecCCcc
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF---DQRIFSTVFSTGESY   91 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~~~~~d~   91 (351)
                      ....+..+.++|+..++++.......++.+.+|++....  .......+|...|.+++|+|+   +..|+++    +.|+
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~dg   90 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD--LKLLREIEKAKPIKCGTFGATSLQQRYLATG----DFGG   90 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS--EEEEEEEEESSCEEEEECTTCCTTTCCEEEE----ETTS
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc--ccceeeecccCcEEEEEEcCCCCCCceEEEe----cCCC
Confidence            345677888899887776543222247899999998643  333444589999999999998   5777774    6899


Q ss_pred             eEEEEEcccccCCCCCCcce-eeeeeeccccceeEEEe------cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc
Q 018697           92 GAAIWQIPELYGQLNSPQLE-RIAALDAHVGKINCVLW------WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                      .|++|++.         ..+ .+..+.+|...|.+++|      +|+++. +++++.|+.|++||+.++...........
T Consensus        91 ~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  160 (357)
T 3i2n_A           91 NLHIWNLE---------APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQ  160 (357)
T ss_dssp             CEEEECTT---------SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred             eEEEEeCC---------CCCccEEEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence            99999998         344 77888899999999954      677873 67778999999999997653333333222


Q ss_pred             cCcccceeeeE----ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCC---CCCcEEEEecCCCeEEEE
Q 018697          165 SGMLHYLSGGA----WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT---KKKHLLVTAADESGIHLW  236 (351)
Q Consensus       165 ~~~~~~v~~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~---~~~~~l~~~~~dg~i~i~  236 (351)
                      ..+...+.+++    |+|+++.+++++.|+.|++||+++++......... +.+++|+|   ++. ++++++.||.|++|
T Consensus       161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVF  239 (357)
T ss_dssp             TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEE
T ss_pred             CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEE
Confidence            22244788887    78999999999999999999999887654444333 99999999   787 79999999999999


Q ss_pred             ecccCCcceeEee-----CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          237 DLRMLKAPIQELP-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       237 d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                      |++. .+++..+.     +|...|++++|+|+++.+|++++.||.|++||++.....................+++..+.
T Consensus       240 d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  318 (357)
T 3i2n_A          240 DMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT  318 (357)
T ss_dssp             EEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred             eCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence            9987 44554444     89999999999999933899999999999999986432211100000000001135677888


Q ss_pred             cccceEEEEEeCCCCCceEE-EeeeCCeEEEeecCcc
Q 018697          312 DYEDSVYGLAWSSREPWIFA-SLSYDGRVVVESVKPF  347 (351)
Q Consensus       312 ~~~~~v~~~~~~~~~~~~l~-s~~~dg~v~vw~~~~~  347 (351)
                      .|...|++++|+|+++ +|+ +++.|+.|++|++.+.
T Consensus       319 ~~~~~v~~~~~s~~~~-~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          319 LSTQPISSLDWSPDKR-GLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CCSSCEEEEEECSSST-TEEEEEETTSEEEEEEECC-
T ss_pred             cCCCCeeEEEEcCCCC-eEEEEecCCCcEEEEECCCc
Confidence            9999999999999999 565 8999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-39  Score=298.69  Aligned_cols=296  Identities=14%  Similarity=0.160  Sum_probs=230.0

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      ...+.++|++..++.+.     ++.+.+|++....   ....+.+|...|.+++|+|++++|+++    +.|++|+|||+
T Consensus        21 ~~~~~~spdg~~l~~~~-----~~~v~l~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~lasg----~~d~~v~lWd~   88 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCN-----GTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSGYYCASG----DVHGNVRIWDT   88 (611)
T ss_dssp             CCCCEECTTSSEEEEEE-----TTEEEEEETTCSS---CCEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEES
T ss_pred             eeEEeeCCCCCEEEeCC-----CCEEEEecCCCcc---cCeEecCCCCceEEEEECCCCcEEEEE----eCCCCEEEeEC
Confidence            44566789998888764     4689999886432   234567899999999999999998885    78999999998


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC----CcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      ..       ........+..|.++|.+++|+|+++. +++++.+    +.|++||..  ....     ...+|...|.++
T Consensus        89 ~~-------~~~~~~~~~~~~~~~v~~v~fs~dg~~-l~~~~~~~~~~~~v~~wd~~--~~~~-----~l~gh~~~v~~v  153 (611)
T 1nr0_A           89 TQ-------TTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFDTG--TSNG-----NLTGQARAMNSV  153 (611)
T ss_dssp             SS-------TTCCEEEEEECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETTTC--CBCB-----CCCCCSSCEEEE
T ss_pred             CC-------CcceeeEeecccCCceEEEEECCCCCE-EEEEECCCCceeEEEEeeCC--CCcc-----eecCCCCCceEE
Confidence            62       123445678899999999999999995 4444433    467888743  2221     234678899999


Q ss_pred             EECCCCCc-EEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-
Q 018697          175 AWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-  249 (351)
Q Consensus       175 ~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  249 (351)
                      +|+|+++. |++++.|++|++||.++++....+. +|   |.+++|+|+++ +|++++.|++|++||+++ ++.+..+. 
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~-g~~~~~~~~  230 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVD-GTKTGVFED  230 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-CCEEEECBC
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCC-EEEEEECCCcEEEEECCC-CcEeeeecc
Confidence            99999875 8999999999999998877766665 55   99999999998 899999999999999987 55666663 


Q ss_pred             ------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc---------------------cc---cCC
Q 018697          250 ------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES---------------------LV---ESP  299 (351)
Q Consensus       250 ------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------~~---~~~  299 (351)
                            +|...|.+++|+|++ .+|++++.|++|++||+++..........                     .+   ..+
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~  309 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV  309 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence                  799999999999999 99999999999999999864221100000                     00   000


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +...+.+...+.+|...|++++|+|+++ +|++++.|+.|++||+.+
T Consensus       310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          310 NPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIST  355 (611)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             eCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCC
Confidence            0111234556678999999999999999 899999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.4e-39  Score=277.53  Aligned_cols=251  Identities=17%  Similarity=0.209  Sum_probs=213.4

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+.+|.+.|++++|+|+++.|+++    +.|++|+|||..         ..+....+..|...|.+++|+|++.. ++
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~----s~Dg~v~vWd~~---------~~~~~~~~~~~~~~v~~~~~sp~g~~-la  122 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSS----SQDGKVIVWDSF---------TTNKEHAVTMPCTWVMACAYAPSGCA-IA  122 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT---------TCCEEEEEECSSSCCCEEEECTTSSE-EE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEE----eCCCeEEEEECC---------CCCcceEEecCCCCEEEEEECCCCCE-EE
Confidence            45678999999999999999888885    799999999987         55677788889999999999999984 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcc-cccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQ-VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN  213 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~  213 (351)
                      +++.|+.+++|++........ .......+|...|.+++|+|++..|++++.|++|++||+++++.+..+. +|   +.+
T Consensus       123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~  201 (354)
T 2pbi_B          123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLC  201 (354)
T ss_dssp             EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred             EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEE
Confidence            668899999999875322111 1122234677899999999999999999999999999999998887776 44   899


Q ss_pred             EEcCCC--CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          214 VDYDTK--KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       214 ~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      ++|+|+  +. +|++|+.|+.|++||+++ ++++..+.+|...|++++|+|++ .+|++++.|++|++||++.       
T Consensus       202 ~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~-------  271 (354)
T 2pbi_B          202 LDLAPSETGN-TFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRA-------  271 (354)
T ss_dssp             EEECCCSSCC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT-------
T ss_pred             EEEEeCCCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCC-------
Confidence            999874  55 899999999999999998 67888999999999999999999 9999999999999999987       


Q ss_pred             CcccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          292 SESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                  ...+..+..  +...+.+++|+|++. +|++++.|+.|++||+.+
T Consensus       272 ------------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          272 ------------DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             ------------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             ------------CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCC
Confidence                        555555543  334689999999999 899999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-40  Score=293.25  Aligned_cols=328  Identities=9%  Similarity=0.041  Sum_probs=227.6

Q ss_pred             cceeeeccccceeEeeeecCCCC------cceEEEeeee---------------eCCCCEEEEEEeCCCCCeEE-EEeee
Q 018697            5 SSGIGYGLKYQARCISDVKADTD------HTSFLTGTLS---------------LKEENEVHLLRLSSGGTELI-CEGLF   62 (351)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~---------------~~~~~~i~~~~~~~~~~~~~-~~~~~   62 (351)
                      ..+..|........+.+.+..+.      ...+++|+..               ...++.|++|++........ ...+.
T Consensus       125 r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~  204 (524)
T 2j04_B          125 RRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV  204 (524)
T ss_dssp             SCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE
T ss_pred             cceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE
Confidence            33445555444555555554311      2778887632               23568899999876543221 23355


Q ss_pred             cCCcceeeeeeCCC------CCceEEEEeecCCcceEEEEEcccccCCCCC--CcceeeeeeeccccceeEEEecCCCCC
Q 018697           63 SHPNEIWDLSSCPF------DQRIFSTVFSTGESYGAAIWQIPELYGQLNS--PQLERIAALDAHVGKINCVLWWSSGRH  134 (351)
Q Consensus        63 ~h~~~v~~i~~~~~------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~  134 (351)
                      .|.+.|.+++|+|+      +..|+++    +.|++|+|||+.........  ....+...+.+|...|++++|++++  
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~----s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--  278 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFV----SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--  278 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEE----ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEE----ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--
Confidence            67899999999997      3455554    78999999999732110000  0012345678899999999999865  


Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee--EECCCC-CcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--AWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      .+++++.||+|++||+.++.....    ...+|...|.++  .|+|++ ..|++++.|++|++||++++++...+. +| 
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~----~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~  353 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSF----YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRF  353 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSE----EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EEC
T ss_pred             eEEEEeCCCEEEEEECCCCCCceE----EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-ccc
Confidence            377889999999999986533222    123677799999  578887 789999999999999999887666554 22 


Q ss_pred             ----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCC
Q 018697          211 ----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN  286 (351)
Q Consensus       211 ----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  286 (351)
                          +.+++|+|+++ .+++++.|++|++||++. ...+..+.+|...|++++|+|++ .+|++|+.|++|++||+....
T Consensus       354 ~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~  430 (524)
T 2j04_B          354 RGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRL  430 (524)
T ss_dssp             SCCSCCCEEEETTTT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSST
T ss_pred             ccCcccceEeCCCcC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhh
Confidence                67899999998 789999999999999997 55677888999999999999999 899999999999999976431


Q ss_pred             CCC-C---------CCcccccCCcc---------------cccccceeeccccceEEEEEeCCCCC--ceEEEeeeCCeE
Q 018697          287 HDE-L---------PSESLVESPNQ---------------RANSLLNSYSDYEDSVYGLAWSSREP--WIFASLSYDGRV  339 (351)
Q Consensus       287 ~~~-~---------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~v  339 (351)
                      ... .         ....-..++..               ..+.++..+.+|...|++++|+|+++  ..+|+|+.||.|
T Consensus       431 ~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v  510 (524)
T 2j04_B          431 LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL  510 (524)
T ss_dssp             TTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred             ccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceE
Confidence            110 0         00011112211               12456777888999999999999953  279999999999


Q ss_pred             EEeecCc
Q 018697          340 VVESVKP  346 (351)
Q Consensus       340 ~vw~~~~  346 (351)
                      +||++.-
T Consensus       511 rlw~l~~  517 (524)
T 2j04_B          511 TLEYLSL  517 (524)
T ss_dssp             EEEECSC
T ss_pred             EEEEccc
Confidence            9999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.1e-40  Score=285.56  Aligned_cols=257  Identities=16%  Similarity=0.254  Sum_probs=214.8

Q ss_pred             eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC
Q 018697           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH  134 (351)
Q Consensus        55 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  134 (351)
                      ......+.+|.+.|++++|+|+++.|+++    +.|++|+|||+.         ..+....+..|...|.+++|+|+++.
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~----s~D~~v~iWd~~---------~~~~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSA----SQDGRLIVWNAL---------TSQKTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEE----ETTSEEEEEETT---------TTEEEEEEECCCTTCCCCEECTTSSE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCccceEEecCCCCEEEEEECCCCCE
Confidence            34457788999999999999999999885    799999999988         66788889999999999999999984


Q ss_pred             cEEEEecCCcEEEEEcCCCCCCc--ccccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceee----
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNA--QVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIE----  207 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~----  207 (351)
                       +++++.|+.|++|++.+.....  ........+|...+.++.|.|++ ..|++++.|++|++||+++++.+..+.    
T Consensus       123 -las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          123 -VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             -EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             -EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence             6666899999999997532111  11222345788899999999975 468999999999999999988766552    


Q ss_pred             cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          208 HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       208 ~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+|   +.+++|+|.+..++++|+.|+.|++||++....++..+.+|...|++++|+|++ .+|++++.|++|++||++.
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCC
Confidence            234   999999874434899999999999999986567888999999999999999999 9999999999999999998


Q ss_pred             CCCCCCCCcccccCCcccccccceeecccc-------ceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSYSDYE-------DSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                         +.++..+..+.       ..|++++|+|+|+ +|++++.||.|++||+..
T Consensus       281 -------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          281 -------------------GHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             -------------------TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTT
T ss_pred             -------------------CcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCC
Confidence                               66666554432       3489999999999 899999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.1e-39  Score=293.89  Aligned_cols=270  Identities=23%  Similarity=0.388  Sum_probs=229.1

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+..+.++|+...++.+.    .++.+++|++...    ....+.+|...|.+++|+|+++.|+++    +.|+.|++|+
T Consensus       305 ~v~~~~~~~~~~~l~t~~----~d~~i~~w~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~dg~v~~~~  372 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASAS----DDKTVKLWNRNGQ----HLQTLTGHSSSVWGVAFSPDGQTIASA----SDDKTVKLWN  372 (577)
T ss_dssp             CEEEEEECTTSSEEEEEE----TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEe----CCCeEEEEeCCCC----eeEEEeCCCCCEEEEEECCCCCEEEEE----eCCCEEEEEc
Confidence            345566777777777654    5788999986543    235567899999999999999998875    6899999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ..          .+.+..+..|...|.+++|+|+++. +++++.|+.|++||... . ..    ....+|...|.+++|+
T Consensus       373 ~~----------~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~-~-~~----~~~~~~~~~v~~~~~s  435 (577)
T 2ymu_A          373 RN----------GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG-Q-LL----QTLTGHSSSVWGVAFS  435 (577)
T ss_dssp             TT----------CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTC-C-EE----EEEECCSSCEEEEEEC
T ss_pred             CC----------CCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCC-C-EE----EEecCCCCCeEEEEEC
Confidence            64          4667788899999999999999995 67778899999999652 2 11    1233567799999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (351)
                      |++++|++++.|+.|++||+. ++.+..+. +|   +.+++|+|+++ +|++++.|+.|++||..  ++.+..+.+|...
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~--~~~~~~~~~h~~~  510 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSS  510 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSC-EEEEEETTSEEEEEETT--SCEEEEEECCSSC
T ss_pred             CCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCC--CCEEEEEeCCCCC
Confidence            999999999999999999964 45555555 34   99999999998 89999999999999964  6688999999999


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      |++++|+|++ ++|++++.|+.|++||. .                   ++++..+.+|...|++++|+|+++ +|++++
T Consensus       511 v~~l~~s~dg-~~l~s~~~dg~v~lwd~-~-------------------~~~~~~~~~h~~~v~~~~fs~dg~-~l~s~~  568 (577)
T 2ymu_A          511 VRGVAFSPDG-QTIASASDDKTVKLWNR-N-------------------GQLLQTLTGHSSSVWGVAFSPDGQ-TIASAS  568 (577)
T ss_dssp             EEEEEECTTS-SCEEEEETTSEEEEECT-T-------------------SCEEEEEECCSSCEEEEEECTTSS-CEEEEE
T ss_pred             EEEEEEcCCC-CEEEEEECcCEEEEEeC-C-------------------CCEEEEEcCCCCCEEEEEEcCCCC-EEEEEe
Confidence            9999999999 99999999999999996 3                   678889999999999999999999 899999


Q ss_pred             eCCeEEEee
Q 018697          335 YDGRVVVES  343 (351)
Q Consensus       335 ~dg~v~vw~  343 (351)
                      .|+.|++||
T Consensus       569 ~D~~i~~Wd  577 (577)
T 2ymu_A          569 SDKTVKLWN  577 (577)
T ss_dssp             TTSCEEEEC
T ss_pred             CCCEEEEeC
Confidence            999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=275.98  Aligned_cols=267  Identities=18%  Similarity=0.294  Sum_probs=208.0

Q ss_pred             EEEeeecCCc-ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee-eeeeccccceeEEEecCCCCC
Q 018697           57 ICEGLFSHPN-EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRH  134 (351)
Q Consensus        57 ~~~~~~~h~~-~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~  134 (351)
                      ....+.+|.+ .|++++|+|+++.|+++    +.|++|+||++..       ...... ....+|...|.+++|+|+++.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~----~~D~~i~iw~~~~-------~~~~~~~~~~~~h~~~v~~~~~sp~g~~   75 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASC----GGDRRIRIWGTEG-------DSWICKSVLSEGHQRTVRKVAWSPCGNY   75 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEE----ETTSCEEEEEEET-------TEEEEEEEECSSCSSCEEEEEECTTSSE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEE----cCCCeEEEEEcCC-------CcceeeeeeccccCCcEEEEEECCCCCE
Confidence            3466778987 99999999999998885    7999999999872       111122 223689999999999999984


Q ss_pred             cEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc---eeecce-
Q 018697          135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN---SIEHAH-  210 (351)
Q Consensus       135 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~-  210 (351)
                       +++++.|++|++|++......   ......+|...|.+++|+|++++|++++.|+.|++||++++....   .+. .| 
T Consensus        76 -l~s~s~D~~v~iw~~~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~  150 (345)
T 3fm0_A           76 -LASASFDATTCIWKKNQDDFE---CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHT  150 (345)
T ss_dssp             -EEEEETTSCEEEEEECCC-EE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCC
T ss_pred             -EEEEECCCcEEEEEccCCCeE---EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcC
Confidence             667789999999999854211   112334678899999999999999999999999999998765322   222 44 


Q ss_pred             --eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                        |.+++|+|++. +|++++.|+.|++||.+... .+...+.+|...|++++|+|++ .+|++++.|++|++||......
T Consensus       151 ~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          151 QDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             SCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTC
T ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCC
Confidence              99999999998 89999999999999998622 2456788999999999999999 9999999999999999865322


Q ss_pred             CCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          288 DELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .......    .......++..+.+ |...|.+++|+|++. .|++++.|+.|++|+...
T Consensus       229 ~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          229 EQGVACS----GSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             TTCCCCC-------CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred             Cccceee----ccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence            1111000    00011344555554 888999999999998 899999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4e-39  Score=296.57  Aligned_cols=286  Identities=13%  Similarity=0.144  Sum_probs=232.3

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.++|++..++.|.    .++.|++|++..... .....+.+|.+.|.+++|+|+++.|+++......++.|++
T Consensus        59 ~~~v~~~~~spdg~~lasg~----~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           59 SHQTTVAKTSPSGYYCASGD----VHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             CCceEEEEECCCCcEEEEEe----CCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            34567788899998888875    589999999865333 2335677899999999999999999887311111257888


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||..           .....+.+|...|.+++|+|++...+++++.|++|++||..+...     .....+|...|.+++
T Consensus       134 wd~~-----------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-----~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          134 FDTG-----------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KSTFGEHTKFVHSVR  197 (611)
T ss_dssp             TTTC-----------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----EEEECCCSSCEEEEE
T ss_pred             eeCC-----------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-----eeeeccccCceEEEE
Confidence            8754           445678899999999999999986577779999999999875321     123346888999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeec------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc--
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP--  244 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  244 (351)
                      |+|++++|++++.|+.|++||+.+++....+..      +|   |.+++|+|+++ +|++++.|++|++||+++ .+.  
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~-~~~~~  275 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVAT-LKVEK  275 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCC-Cceee
Confidence            999999999999999999999998887666632      45   99999999998 899999999999999875 322  


Q ss_pred             -----------------------------------------eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          245 -----------------------------------------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       245 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                                                               ...+.+|...|++++|+|++ .+|++++.|++|++||+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECC
Confidence                                                     23445799999999999999 999999999999999999


Q ss_pred             CCCCCCCCCcccccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .                   +.....+ ..|...|.+++|++++  .+++++.|+.+++|++..
T Consensus       355 ~-------------------~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          355 T-------------------GISNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             T-------------------CCEEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSS
T ss_pred             C-------------------CceeeecccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCC
Confidence            8                   5555554 5788999999999876  488999999999999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.3e-39  Score=298.97  Aligned_cols=289  Identities=16%  Similarity=0.272  Sum_probs=229.7

Q ss_pred             ccceeEeeeecCCCCcce-EEEeeeeeCCCCEEEEEEeCCCCC--eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCC
Q 018697           13 KYQARCISDVKADTDHTS-FLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~   89 (351)
                      +.+...|..+.++++... ++.|    ..++.|++|++.....  ......+.+|...|.+++|+|+++.|+++    +.
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~----s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg----s~  450 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSA----SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG----SW  450 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEE----ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEE----ET
T ss_pred             ccCCceeEEEEecCCCCCEEEEE----eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEE----eC
Confidence            334566777888876644 4444    3689999999986543  23456788999999999999999988885    79


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      |++|+|||+.         .......+.+|...|.+++|+|++.. +++++.|++|++||+...  ..........+|..
T Consensus       451 Dg~v~vwd~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          451 DGELRLWDLA---------AGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGE--CKYTISEGGEGHRD  518 (694)
T ss_dssp             TSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSC--EEEEECSSTTSCSS
T ss_pred             CCcEEEEECC---------CCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCC--cceeeccCCCCCCC
Confidence            9999999998         66788889999999999999999985 777799999999998642  11222223346778


Q ss_pred             ceeeeEECCCC--CcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          170 YLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       170 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      .|.+++|+|++  ..+++++.|+.|++||+++++....+. +|   |.+++|+|+++ +|++|+.|+.|++||+++ .+.
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~-~~~  595 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE-GKK  595 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT-TEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-Cce
Confidence            99999999987  568999999999999999888776666 45   99999999998 899999999999999997 656


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc------------
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD------------  312 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  312 (351)
                      +..+. +...|.+++|+|++ .++++++ |+.|++||++.                   +..+..+..            
T Consensus       596 ~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          596 LYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLES-------------------KSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             EECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTT-------------------TEEEEEECCCCC---------
T ss_pred             EEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCC-------------------CCChhhhcccccccccccccc
Confidence            66665 45689999999998 7776655 66799999987                   333333321            


Q ss_pred             -------ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          313 -------YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       313 -------~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                             +...+++++|+|+++ +|++|+.||.|++|++..+
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~~  694 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGRY  694 (694)
T ss_dssp             -------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC---
T ss_pred             ccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccCC
Confidence                   122478999999999 8999999999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-39  Score=275.32  Aligned_cols=255  Identities=18%  Similarity=0.305  Sum_probs=197.8

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~  136 (351)
                      ..+.+|.+.|++++|+|+++.|+++    +.|++|+|||+..       .....+..+.+|..+|.+++|+++  +. ++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasg----s~D~~v~lwd~~~-------~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l   74 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATC----SSDRSVKIFDVRN-------GGQILIADLRGHEGPVWQVAWAHPMYGN-IL   74 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEE----ETTTEEEEEEEET-------TEEEEEEEEECCSSCEEEEEECCGGGSS-CE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEE----eCCCeEEEEEecC-------CCcEEEEEEcCCCccEEEEEeCCCCCCC-EE
Confidence            4456899999999999999998885    7999999999972       122456788999999999999864  55 47


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcC--ceeecce--
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKT--NSIEHAH--  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~--  210 (351)
                      ++++.|++|++||+.++.....   ....+|...|.+++|+|+  +.+|++++.|+.|++||++.+...  ......|  
T Consensus        75 ~s~s~D~~v~iWd~~~~~~~~~---~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTWEKS---HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EEEETTSCEEEECCSSSCCCEE---EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EEEECCCEEEEEECCCCcceEE---EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            7779999999999986432111   123467779999999998  778999999999999999876321  1222244  


Q ss_pred             -eEEEEcCCCC-----------------CcEEEEecCCCeEEEEecccCC--cceeEeeCCCCceeEEEecCCC---CCe
Q 018697          211 -VRNVDYDTKK-----------------KHLLVTAADESGIHLWDLRMLK--APIQELPGHTHWTWAVCCNPEY---DGF  267 (351)
Q Consensus       211 -v~~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~~~  267 (351)
                       +.+++|+|+.                 . +|++|+.|+.|++||++...  +++..+.+|...|.+++|+|++   ..+
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence             8899999973                 4 79999999999999997532  3567788999999999999985   368


Q ss_pred             EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       268 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |++++.|++|++||+......               ......+..|...|++++|+|+++ +|++++.|+.|++|+..
T Consensus       231 las~s~D~~v~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSN---------------TWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCC---------------CCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEccCcccc---------------chhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence            999999999999999751100               112234566888999999999998 89999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-38  Score=268.59  Aligned_cols=252  Identities=15%  Similarity=0.254  Sum_probs=206.1

Q ss_pred             EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        56 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      .....+.+|.+.|.+++|+|++..++++   ++.|++|++|++....    .....++..+.+|...|.+++|+|++.. 
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s---~s~D~~v~~W~~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~dg~~-   79 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLS---ASRDKTLISWKLTGDD----QKFGVPVRSFKGHSHIVQDCTLTADGAY-   79 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEE---EETTSEEEEEEEEEET----TEEEEEEEEEECCSSCEEEEEECTTSSE-
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEE---ecCCccEEEecCCCCC----ccccccceEEeCCcccEEEEEECCCCCE-
Confidence            3446678999999999999977544444   4799999999986210    0123567788999999999999999984 


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~  212 (351)
                      +++++.|++|++||+.++....     ...+|...|.+++|+|++..+++++.|+.|++||++. +.+..+. +|   +.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~  152 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQ-----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVS  152 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE-----EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEE
T ss_pred             EEEEeCCCEEEEEECCCCCeeE-----EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEE
Confidence            6777899999999998754322     2346777999999999999999999999999999974 4444444 34   99


Q ss_pred             EEEcCCCCC-----cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          213 NVDYDTKKK-----HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       213 ~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                      +++|+|...     .++++++.|+.|++||++. .+....+.+|...|.+++|+|++ .+|++++.|+.|++||+..   
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~---  227 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAA---  227 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTT---
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---
Confidence            999998532     2799999999999999987 66778888999999999999999 9999999999999999998   


Q ss_pred             CCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                      .+++..+..+ ..|.+++|+|++. ++++++ +..+++|+++.
T Consensus       228 ----------------~~~~~~~~~~-~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~  267 (319)
T 3frx_A          228 ----------------KKAMYTLSAQ-DEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDP  267 (319)
T ss_dssp             ----------------TEEEEEEECC-SCEEEEEECSSSS-EEEEEE-TTEEEEEEETT
T ss_pred             ----------------CcEEEEecCC-CcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCc
Confidence                            7778788655 5699999999998 677665 55699999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=269.64  Aligned_cols=259  Identities=18%  Similarity=0.266  Sum_probs=195.7

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-ec-cccceeEEEecCCCCCc
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DA-HVGKINCVLWWSSGRHD  135 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~  135 (351)
                      ...+.+|.+.|++++|+|+  .|++    ++.|++|++|++..       ........+ .. |...|.+++|+|+++ +
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las----~~~D~~i~lw~~~~-------~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~   72 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILAT----GSTDRKIKLVSVKY-------DDFTLIDVLDETAHKKAIRSVAWRPHTS-L   72 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEE----EESSSCEEEEECSS-------SCCEEEEEECTTCCCSCEEEEEECTTSS-E
T ss_pred             ceeeccCCCceeeeccCCC--EEEE----EcCCCEEEEEEecC-------CCeEEEEEEecCCccCCEEEEEECCCCC-E
Confidence            4667899999999999987  5555    47999999999872       123444555 34 999999999999998 3


Q ss_pred             EEEEecCCcEEEEEcCCCCCC--cccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-C---cCceeecc
Q 018697          136 KLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-G---KTNSIEHA  209 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~---~~~~~~~~  209 (351)
                      +++++.|++|++||+......  .........+|...|.+++|+|++++|++++.|+.|++||++.. .   ++..+. +
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~  151 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-E  151 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-C
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-c
Confidence            666789999999999642211  11112234578889999999999999999999999999999543 2   223333 4


Q ss_pred             e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCC--CCCeEEEeeCCCeEEEEEcC
Q 018697          210 H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPE--YDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       210 ~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~  283 (351)
                      |   |.+++|+|++. +|++++.|++|++||.+... +++..+.+|...|.+++|+|+  + .+|++++.|++|++||++
T Consensus       152 h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          152 HSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEE
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEec
Confidence            4   99999999998 89999999999999987521 467888999999999999998  5 789999999999999997


Q ss_pred             CCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ......           .....+...+.. |...|.+++|++++  +|++++.||.|++|++.+
T Consensus       230 ~~~~~~-----------~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          230 GDDEDD-----------QQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EECTTS-----------CEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEET
T ss_pred             CCCccc-----------cceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCC
Confidence            621100           000133444544 88999999999764  699999999999999753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=267.93  Aligned_cols=293  Identities=12%  Similarity=0.199  Sum_probs=242.0

Q ss_pred             eeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeec
Q 018697            8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST   87 (351)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~   87 (351)
                      ....+..+...+..+.++++...++.|.    .++.|.+|++....   ....+.+|...|.+++|+|+++.|+++    
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~----   92 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTG----   92 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE----
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEE----
Confidence            3444555566788888999988888874    57899999987643   345677899999999999999888875    


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC-----CcEEEEEcCCCCCCcccccc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-----ENIFLWSLDCSNKNAQVQSK  162 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~  162 (351)
                      +.|+.|++||+.         ..+.+..+. |...|.+++|+|++.. +++++.+     +.|++||+............
T Consensus        93 ~~dg~i~iwd~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~  161 (369)
T 3zwl_B           93 SADYSIKLWDVS---------NGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKV  161 (369)
T ss_dssp             ETTTEEEEEETT---------TCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred             eCCCeEEEEECC---------CCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence            689999999998         566777775 8899999999999994 6666667     99999999865433222111


Q ss_pred             ------cccCccc--ceeeeEECCCCCcEEEeecCCeEEEEEccc-CCcCceeecce--eEEEEcCCCCCcEEEEecCCC
Q 018697          163 ------QSSGMLH--YLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       163 ------~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg  231 (351)
                            ....|..  .+.+++|+|+++.+++++.|+.|++||+++ .+....+....  +.+++|+|++. +|++++.|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  240 (369)
T 3zwl_B          162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDT  240 (369)
T ss_dssp             CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCc
Confidence                  1112333  899999999999999999999999999998 55555555222  99999999998 799999999


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC--------------eEEEEEcCCCCCCCCCCccccc
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS--------------TVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      .|++||+++ .+.+..+. +...+..++|+|++ .++++++.++              .+++||...             
T Consensus       241 ~i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------  304 (369)
T 3zwl_B          241 NSFLVDVST-LQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------------  304 (369)
T ss_dssp             EEEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTT-------------
T ss_pred             eEEEEECCC-Cceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCC-------------
Confidence            999999997 66677776 78899999999999 9999999888              899999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                            ++++..+.+|...|++++|+|+++ +|++++.||.|++|++++
T Consensus       305 ------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          305 ------EEEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ------CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECH
T ss_pred             ------CcchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECcc
Confidence                  888899999999999999999998 899999999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.2e-39  Score=278.72  Aligned_cols=300  Identities=10%  Similarity=0.046  Sum_probs=219.5

Q ss_pred             eeccccceeEeeeecCCCCcceEEEeee---eeCCCCEEEEEEeCCCCCe-------EEEEeeecCCcceeeeeeCCCCC
Q 018697            9 GYGLKYQARCISDVKADTDHTSFLTGTL---SLKEENEVHLLRLSSGGTE-------LICEGLFSHPNEIWDLSSCPFDQ   78 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~i~~~~~~~~~~~-------~~~~~~~~h~~~v~~i~~~~~~~   78 (351)
                      .|.+.++   |..+.+.|++..++.|.-   ..+-+|.|++|++......       .....+.+|+..|.+++++  +.
T Consensus        10 ~~~~g~P---V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~   84 (365)
T 4h5i_A           10 SYNVGYP---AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KG   84 (365)
T ss_dssp             EEECSSC---EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TT
T ss_pred             ecCCCCC---EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CC
Confidence            4455544   445556678888877642   1234678999999876442       1223456788888888765  44


Q ss_pred             ceEEEEee-------cCCcceEEEEEcccccCCCCCCcceeeeee-----eccccceeEEEecCCCCCcEEEE-ecCCcE
Q 018697           79 RIFSTVFS-------TGESYGAAIWQIPELYGQLNSPQLERIAAL-----DAHVGKINCVLWWSSGRHDKLVS-IDEENI  145 (351)
Q Consensus        79 ~l~~~~~~-------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v  145 (351)
                      .+++++..       ++.|+.+++|++....     ...+.....     ..+...+.+++|+|||+.+++++ +.|++|
T Consensus        85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i  159 (365)
T 4h5i_A           85 IILVGCNENSTKITQGKGNKHLRKFKYDKVN-----DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM  159 (365)
T ss_dssp             EEEEECCCCHHHHHHTSCCCCEEEEEEETTT-----TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred             EEEEEECCCccEEEEecCCCcEEEEEecCCC-----ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence            55554311       3568889999987311     112222221     23445689999999999755555 568999


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee-ecce---eEEEEcCCCCC
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHAH---VRNVDYDTKKK  221 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~---v~~~~~~~~~~  221 (351)
                      +|||+.+......+      .|...|.+++|+|+++++++++. +.+++|+..+++..... ...|   +.+++|+|++.
T Consensus       160 ~iwd~~~~~~~~~~------~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~  232 (365)
T 4h5i_A          160 RIIDPSDLTEKFEI------ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT  232 (365)
T ss_dssp             EEEETTTTEEEEEE------ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred             EEeECCCCcEEEEe------CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence            99999875443322      24458999999999999888875 45677777766654332 2233   99999999998


Q ss_pred             cEEEEecCCC----eEEEEecccCCc---ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcc
Q 018697          222 HLLVTAADES----GIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES  294 (351)
Q Consensus       222 ~~l~~~~~dg----~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  294 (351)
                       ++++++.|+    .+++|++.....   ....+.+|..+|++++|+|+| .+||+|+.|++|+|||+++          
T Consensus       233 -~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~----------  300 (365)
T 4h5i_A          233 -VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKD----------  300 (365)
T ss_dssp             -EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTT----------
T ss_pred             -EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCC----------
Confidence             788887776    688899875322   234567899999999999999 9999999999999999998          


Q ss_pred             cccCCcccccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          295 LVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       295 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                               ++++..+ .+|...|++++|+|||+ +||+++.|++|+||++++.
T Consensus       301 ---------~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          301 ---------LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ---------TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             ---------CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence                     8888775 78999999999999999 8999999999999999753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-37  Score=265.83  Aligned_cols=280  Identities=16%  Similarity=0.188  Sum_probs=230.8

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEE--eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICE--GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+..+.++++...++.+.     ++.+.+|++..........  ...+|...|.+++|+|+++.|+++    +.|+.|++
T Consensus        53 ~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~  123 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEASTLSI  123 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESSSEEEE
T ss_pred             ceEEEEEecCCcEEEEcC-----CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE----cCCCcEEE
Confidence            455667778887777663     6899999998654322222  233799999999999999888875    68999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |++..       ........+..|...|.+++|+|+++. +++++.|+.|++||+.++.....     ...|...+.+++
T Consensus       124 ~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~-----~~~~~~~i~~~~  190 (337)
T 1gxr_A          124 WDLAA-------PTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQ-----FQGHTDGASCID  190 (337)
T ss_dssp             EECCC-------C--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE-----ECCCSSCEEEEE
T ss_pred             EECCC-------CCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeee-----eecccCceEEEE
Confidence            99982       233366778889999999999999884 66778899999999986432222     234666899999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (351)
                      |+|+++.+++++.|+.|++||+++++....+.... +.+++|+|+++ ++++++.++.|++||++. .+ ...+..|...
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~  267 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNK-PD-KYQLHLHESC  267 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTS-SC-EEEECCCSSC
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCC-CC-eEEEcCCccc
Confidence            99999999999999999999999988777766444 99999999998 789999999999999986 33 4567789999


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      |.+++|+|++ .+|++++.|+.|++||+..                   ++.+.. ..|...|.+++|+|+++ +|++++
T Consensus       268 v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~-------------------~~~~~~-~~~~~~v~~~~~s~~~~-~l~~~~  325 (337)
T 1gxr_A          268 VLSLKFAYCG-KWFVSTGKDNLLNAWRTPY-------------------GASIFQ-SKESSSVLSCDISVDDK-YIVTGS  325 (337)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEE-EECSSCEEEEEECTTSC-EEEEEE
T ss_pred             eeEEEECCCC-CEEEEecCCCcEEEEECCC-------------------CeEEEE-ecCCCcEEEEEECCCCC-EEEEec
Confidence            9999999999 9999999999999999998                   565544 35778899999999998 899999


Q ss_pred             eCCeEEEeec
Q 018697          335 YDGRVVVESV  344 (351)
Q Consensus       335 ~dg~v~vw~~  344 (351)
                      .||.|++|++
T Consensus       326 ~dg~i~iw~~  335 (337)
T 1gxr_A          326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-38  Score=276.67  Aligned_cols=289  Identities=15%  Similarity=0.191  Sum_probs=233.9

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC---eEEEEeeecCCcceeeeeeCCC----C---CceEEEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT---ELICEGLFSHPNEIWDLSSCPF----D---QRIFSTV   84 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~----~---~~l~~~~   84 (351)
                      ....+..+.+++  ..++.|+    .++.|++|++.....   ......+.+|...|.+++|+|+    +   ..|+++ 
T Consensus        15 h~~~i~~~~~~~--~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~-   87 (397)
T 1sq9_A           15 HDADIFSVSACN--SFTVSCS----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT-   87 (397)
T ss_dssp             SSSCEEEEEECS--SEEEEEE----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE-
T ss_pred             hhcCeEEEEecC--CeEEEEc----CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE-
Confidence            344566666766  5566653    589999999987641   1123556689999999999999    8   788775 


Q ss_pred             eecCCcceEEEEEcccccCCCCCCccee-----eeeeecc-----ccceeEEEec----CCCCCcEEEEecCCcEEEEEc
Q 018697           85 FSTGESYGAAIWQIPELYGQLNSPQLER-----IAALDAH-----VGKINCVLWW----SSGRHDKLVSIDEENIFLWSL  150 (351)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~~~~~~~~d~~v~iwd~  150 (351)
                         +.|+.|++|++.         ..+.     ...+..|     ...|.+++|+    |++..++++++.|+.|++||+
T Consensus        88 ---~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           88 ---SFSGDLLFYRIT---------REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             ---ETTSCEEEEEEE---------ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             ---cCCCCEEEEEcc---------CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence               689999999998         3343     6777888     5999999999    988832566688999999999


Q ss_pred             CC------CCCCc-----cccc--ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-------ce
Q 018697          151 DC------SNKNA-----QVQS--KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------AH  210 (351)
Q Consensus       151 ~~------~~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~  210 (351)
                      .+      .....     .+..  .....|...+.+++|+|++ .+++++.|+.|++||+++++.+..+..       ..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence            86      43333     1110  0002356689999999999 999999999999999999888887775       33


Q ss_pred             -eEEEEcCCCCCcEEEEecCC---CeEEEEecccCCcceeEeeC-------------CCCceeEEEecCCCCCeEEEeeC
Q 018697          211 -VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPG-------------HTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                       +.+++|+|++. +|++++.|   +.|++||+++ .+++..+..             |...|.+++|+|++ .+|++++.
T Consensus       235 ~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  311 (397)
T 1sq9_A          235 SIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGW  311 (397)
T ss_dssp             CEEEEEECSSTT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEET
T ss_pred             ccceEEECCCCC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeC
Confidence             99999999998 89999999   9999999997 667888888             99999999999999 99999999


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec------cc---------------cceEEEEEeCCCC------
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS------DY---------------EDSVYGLAWSSRE------  326 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~------  326 (351)
                      |+.|++||++.                   ++++..+.      .|               ...|++++|+|++      
T Consensus       312 dg~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~  372 (397)
T 1sq9_A          312 DGKLRFWDVKT-------------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  372 (397)
T ss_dssp             TSEEEEEETTT-------------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             CCeEEEEEcCC-------------------CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence            99999999998                   77777777      67               8999999999998      


Q ss_pred             ----CceEEEeeeCCeEEEeecCc
Q 018697          327 ----PWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       327 ----~~~l~s~~~dg~v~vw~~~~  346 (351)
                          . +|++++.||.|++|++++
T Consensus       373 ~~~~~-~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          373 ADLNE-SLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CTTSC-EEEEEETTTEEEEEEEEC
T ss_pred             ccccc-eEEEecCCCcEEEEEcCC
Confidence                5 899999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5e-38  Score=274.25  Aligned_cols=257  Identities=16%  Similarity=0.224  Sum_probs=203.2

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc------------------c
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------------G  121 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~------------------~  121 (351)
                      ...+|.+.|.+++|+|++++|+++     .++.+++|++.         .++.+..+..|.                  .
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g-----~~~~v~i~~~~---------~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  124 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATG-----CNKTTQVYRVS---------DGSLVARLSDDSAANKDPENLNTSSSPSSDL  124 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEE-----CBSCEEEEETT---------TCCEEEEECC-----------------CCCC
T ss_pred             EecCCCCEEEEEEECCCCCEEEEE-----cCCcEEEEEec---------CCCEEEEecCccccccccccccccccCCCce
Confidence            345799999999999999988774     46899999987         445555554432                  2


Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      .|.+++|+|+++. +++++.|+.|++||+.++....     ...+|...|.+++|+|+++.|++++.|+.|++||+++++
T Consensus       125 ~v~~v~~s~dg~~-l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          125 YIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             BEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEE-----EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            4999999999984 6677899999999998643221     234677799999999999999999999999999999988


Q ss_pred             cCceeecce-eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcceeEe-------eCCCCceeEEEecCCCCCeEEEee
Q 018697          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQEL-------PGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      ....+.... +.+++|+| ++. ++++|+.|+.|++||+++ +..+..+       .+|...|.+++|+|++ .+|++++
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s  275 (393)
T 1erj_A          199 CSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGS  275 (393)
T ss_dssp             EEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             eEEEEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEe
Confidence            777766444 99999999 676 899999999999999987 5555555       5789999999999999 9999999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .|+.|++||++.........       ....+.+...+.+|...|.+++|+|++. +|++++.|+.|++||+.+.
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSK-------TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             TTSEEEEEEC----------------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEECCCCCCccccc-------CCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCC
Confidence            99999999998632111000       0011345667788999999999999998 8999999999999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-38  Score=274.12  Aligned_cols=291  Identities=12%  Similarity=0.146  Sum_probs=224.3

Q ss_pred             ceeEeeeecCCCC---c-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeee--cCCcceeeeeeCCC----CCceEEEE
Q 018697           15 QARCISDVKADTD---H-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF--SHPNEIWDLSSCPF----DQRIFSTV   84 (351)
Q Consensus        15 ~~~~~~~~~~~~~---~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~----~~~l~~~~   84 (351)
                      +...+..+.++|+   . ..++++.    .++.|.+|++.............  .|...|.+++|+|+    ++.|+++ 
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-   91 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA-   91 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe-
Confidence            3456677777763   3 3344432    35689999998654322222222  37789999999998    4456664 


Q ss_pred             eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC-CCCCcEEEEecCCcEEEEEcCCCCCCccccccc
Q 018697           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ  163 (351)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  163 (351)
                         +.|+.|++||+.         +.+.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+.++.......  .
T Consensus        92 ---~~dg~i~v~d~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~  156 (366)
T 3k26_A           92 ---GSRGIIRIINPI---------TMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFG--G  156 (366)
T ss_dssp             ---ETTCEEEEECTT---------TCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEEC--S
T ss_pred             ---cCCCEEEEEEch---------hceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEec--c
Confidence               789999999998         5678888999999999999999 666 47777889999999998654322221  1


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec---------------------------ce---eEE
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------------------------AH---VRN  213 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~~---v~~  213 (351)
                      ..+|...|.+++|+|+++.|++++.|+.|++||+++++....+..                           .|   |.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence            135677999999999999999999999999999987654433321                           13   899


Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCc-------------ceeEeeCCCCceeEEEecCC--CCCeEEEeeCCCeEE
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKA-------------PIQELPGHTHWTWAVCCNPE--YDGFILSAGTDSTVN  278 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~  278 (351)
                      ++|+  +. ++++++.|+.|++||++....             .+..+..|...|++++|+|+  + .+|++++.||.|+
T Consensus       237 ~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~  312 (366)
T 3k26_A          237 VRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLY  312 (366)
T ss_dssp             EEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEE
T ss_pred             EEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEE
Confidence            9998  55 899999999999999986332             36777889999999999999  8 9999999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +||+......               ......+..|  ...|++++|+|+++ +|++++.||.|++||+.
T Consensus       313 vwd~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPH---------------KAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGG---------------GCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCc---------------cccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEec
Confidence            9999871100               1233466676  78999999999998 89999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-37  Score=283.46  Aligned_cols=273  Identities=22%  Similarity=0.376  Sum_probs=229.2

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+..+.+.++...++.++    .++.+++|+....    ....+.+|...|.+++|+|+++.++++    +.|+.|++|+
T Consensus       264 ~v~~v~~~~d~~~l~~~~----~d~~i~~w~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t~----~~d~~i~~w~  331 (577)
T 2ymu_A          264 SVNGVAFRPDGQTIASAS----DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASA----SDDKTVKLWN  331 (577)
T ss_dssp             CEEEEEECTTSSEEEEEE----TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCc----EEEEEecCCCCeEEEEECCCCCEEEEE----eCCCeEEEEe
Confidence            455666777887777764    5788888885432    345678999999999999999988875    6899999999


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      +.          ...+..+..|...|.+++|+|+++. +++++.|+.|++||... . ...    ...+|...|.+++|+
T Consensus       332 ~~----------~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~~~-~-~~~----~~~~~~~~v~~~~~s  394 (577)
T 2ymu_A          332 RN----------GQHLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNG-Q-LLQ----TLTGHSSSVRGVAFS  394 (577)
T ss_dssp             TT----------SCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTC-C-EEE----EEECCSSCEEEEEEC
T ss_pred             CC----------CCeeEEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcCCC-C-EEE----EecCCCCCeEEEEEC
Confidence            76          2455677899999999999999994 66668899999999652 2 111    223567799999999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (351)
                      |++++|++++.|+.|++||.. ++.+..+. .|   |.+++|+|+++ ++++++.|+.|++||..  .+.+..+.+|...
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~  469 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSS  469 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--SCEEEEEECCSSC
T ss_pred             CCCCEEEEEeCCCEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECC--CCEEEEEcCCCCC
Confidence            999999999999999999964 55555555 34   99999999998 89999999999999975  5678889999999


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      |.+++|+|++ .+|++++.|+.|++||..                    ++++..+.+|...|++++|+|+++ +|++++
T Consensus       470 v~~~~~spd~-~~las~~~d~~i~iw~~~--------------------~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~  527 (577)
T 2ymu_A          470 VRGVAFSPDG-QTIASASDDKTVKLWNRN--------------------GQLLQTLTGHSSSVRGVAFSPDGQ-TIASAS  527 (577)
T ss_dssp             EEEEEECTTS-CEEEEEETTSEEEEEETT--------------------SCEEEEEECCSSCEEEEEECTTSS-CEEEEE
T ss_pred             EEEEEEcCCC-CEEEEEeCCCEEEEEcCC--------------------CCEEEEEeCCCCCEEEEEEcCCCC-EEEEEE
Confidence            9999999999 999999999999999964                    678889999999999999999999 899999


Q ss_pred             eCCeEEEeecCc
Q 018697          335 YDGRVVVESVKP  346 (351)
Q Consensus       335 ~dg~v~vw~~~~  346 (351)
                      .|+.|++||...
T Consensus       528 ~dg~v~lwd~~~  539 (577)
T 2ymu_A          528 DDKTVKLWNRNG  539 (577)
T ss_dssp             TTSEEEEECTTS
T ss_pred             CcCEEEEEeCCC
Confidence            999999999753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.4e-38  Score=265.17  Aligned_cols=249  Identities=18%  Similarity=0.275  Sum_probs=209.4

Q ss_pred             EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcE
Q 018697           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  136 (351)
                      ....+.+|.+.|.+++|+|+++.|+++    +.|+.|++|++.         ..+....+.+|...|.+++|+|+++. +
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~----~~dg~i~iw~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-l   80 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASS----SADKLIKIWGAY---------DGKFEKTISGHKLGISDVAWSSDSNL-L   80 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEEEECCCSSCEEEEEECTTSSE-E
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEe----eCCCeEEEEeCC---------CcccchhhccCCCceEEEEEcCCCCE-E
Confidence            346678999999999999999988885    699999999987         56777888999999999999999984 6


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEE
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNV  214 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~  214 (351)
                      ++++.|+.|++||+.++.....     ..+|...|.+++|+|+++++++++.|+.|++||+++++....+....  +.++
T Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSGKCLKT-----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE-----EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEE-----EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            7778999999999987543322     23567789999999999999999999999999999988777776322  9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                      +|+|++. ++++++.|+.|++||+++ .+.+..+ ..+..++..++|+|++ .+|++++.|+.|++||++.         
T Consensus       156 ~~~~~~~-~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~---------  223 (312)
T 4ery_A          156 HFNRDGS-LIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK---------  223 (312)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------
T ss_pred             EEcCCCC-EEEEEeCCCcEEEEECCC-CceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCC---------
Confidence            9999998 899999999999999997 5555555 3566789999999999 9999999999999999998         


Q ss_pred             ccccCCcccccccceeeccccceEEE--EEeC-CCCCceEEEeeeCCeEEEeecCcc
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSVYG--LAWS-SREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~-~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                ++++..+.+|...+..  ..++ +++. +|++++.||.|++||+.+.
T Consensus       224 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          224 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ----------TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTC
T ss_pred             ----------CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCc
Confidence                      7888888877654332  3344 5566 8999999999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.3e-38  Score=270.38  Aligned_cols=307  Identities=17%  Similarity=0.172  Sum_probs=231.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.++++...+++|.    .++.+++|++.... ......+.+|...|.+++|+|+++.|+++    +.|+.|++
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~~dg~i~v   78 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTC----GTDRNAYV   78 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEE----ETTSCEEE
T ss_pred             CCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEE----cCCCeEEE
Confidence            45577778888988888874    47999999987642 12345667899999999999999888875    68999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      |++..       ........+..|...|.+++|+|+++. +++++.|+.|++||+....... .......+|...+.+++
T Consensus        79 wd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           79 WTLKG-------RTWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEEET-------TEEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEE-EEEEECTTCCSCEEEEE
T ss_pred             EECCC-------CeeeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCEEEEEEecCCCcce-eeeeeecccCCCeeEEE
Confidence            99972       122334445679999999999999984 6677889999999998654211 11122235667999999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcc------------------cCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          176 WDPHDVNAVAATCESSVQFWDLR------------------SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      |+|+++++++++.|+.|++||++                  .++.+..+. .|   +.+++|+|++. ++++++.|+.|+
T Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~  227 (372)
T 1k8k_C          150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGS-RVAWVSHDSTVC  227 (372)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSS-EEEEEETTTEEE
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCC-EEEEEeCCCEEE
Confidence            99999999999999999999964                  344444444 33   99999999998 899999999999


Q ss_pred             EEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC--CCCC---CCCC--cccc------cCC--
Q 018697          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST--SNHD---ELPS--ESLV------ESP--  299 (351)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~---~~~~--~~~~------~~~--  299 (351)
                      +||+++ .+++..+..|..+|.+++|+|++ .+++++ .|+.|++|+++.  +.-.   ....  ....      ..+  
T Consensus       228 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          228 LADADK-KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             EEEGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             EEECCC-CceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence            999998 66889999999999999999999 888877 899999999986  2100   0000  0000      000  


Q ss_pred             cccccccc------eee-ccccceEEEEEeC-CCC---CceEEEeeeCCeEEEeecCc
Q 018697          300 NQRANSLL------NSY-SDYEDSVYGLAWS-SRE---PWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       300 ~~~~~~~~------~~~-~~~~~~v~~~~~~-~~~---~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ....+...      ..+ .+|...|++++|+ +++   . +|++++.||.|++|++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEEEecC
Confidence            00001111      233 4899999999977 555   6 899999999999999865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=274.43  Aligned_cols=305  Identities=15%  Similarity=0.149  Sum_probs=233.2

Q ss_pred             eEeeeecCCCCcc-eEEEeeeeeCCCCEEEEEEe----CCCCCe--E-EEEeeec----------CCcceeeeeeCCCCC
Q 018697           17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRL----SSGGTE--L-ICEGLFS----------HPNEIWDLSSCPFDQ   78 (351)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~----~~~~~~--~-~~~~~~~----------h~~~v~~i~~~~~~~   78 (351)
                      ..+..+.++|+.. .++.|.    .++.+.+|++    ......  + ....+..          |.+.|.+++|+|+++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGE----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEE----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             CceEEEEECCCCCcEEEEec----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            4566788889888 787764    5799999999    544310  0 1111222          678999999999999


Q ss_pred             ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018697           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~  158 (351)
                      .|+++    +.|+.|++|+.          ..+.+..+..|...|.+++|+|+++. +++++.|+.|++||+.++.....
T Consensus       122 ~l~~~----~~dg~i~i~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          122 SIVTG----VENGELRLWNK----------TGALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEEE----ETTSCEEEEET----------TSCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEE----eCCCeEEEEeC----------CCCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEE
Confidence            88885    68999999993          45777888899999999999999984 66778899999999976432211


Q ss_pred             ccc---------------------------------------------------ccccCcccceeeeEECCCCCcEEEee
Q 018697          159 VQS---------------------------------------------------KQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       159 ~~~---------------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                      +..                                                   .....|...+.+++|+|++++|++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            100                                                   01225667899999999999999999


Q ss_pred             cCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC
Q 018697          188 CESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (351)
                      .|+.|++||+++++....+....  +.+++|+|++  ++++++.|+.|++||+++ .+.+..+..|...|.+++|+|++ 
T Consensus       267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~-  342 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDG-  342 (425)
T ss_dssp             TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTS-
T ss_pred             CCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCC-
Confidence            99999999999988887776222  9999999998  688999999999999987 67888889999999999999999 


Q ss_pred             CeEEEeeCCCeEEEEEcCCCCCCCCC-CcccccCCcccccccceeeccccc--eEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          266 GFILSAGTDSTVNLWLVSTSNHDELP-SESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      .+|++++.||.|++||++........ .............+++..+..|..  .|++++|+|+++ +|++++.||.|++|
T Consensus       343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVV  421 (425)
T ss_dssp             SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEE
T ss_pred             CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eEEEEecCceEEEE
Confidence            99999999999999999872100000 000000000001227788888866  899999999999 89999999999999


Q ss_pred             ecC
Q 018697          343 SVK  345 (351)
Q Consensus       343 ~~~  345 (351)
                      +++
T Consensus       422 ~~~  424 (425)
T 1r5m_A          422 AIP  424 (425)
T ss_dssp             ECC
T ss_pred             eec
Confidence            986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.1e-37  Score=260.90  Aligned_cols=296  Identities=17%  Similarity=0.240  Sum_probs=229.7

Q ss_pred             cccceeEeeeecCCCCcc-eEEEeeeeeCCCCEEEEEEeCCCCC--eEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697           12 LKYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      ++.....|..+.++|+.. .|+.|    ..|+.|++|++.....  ......+.+|...|.+++|+|+++.|+++    +
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~----s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~----~  105 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSA----SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG----S  105 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEE----ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE----E
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEE----cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE----c
Confidence            444556788888998754 44444    3689999999986543  33446678999999999999999998885    6


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .|+.|++|+..         ..........+...+..+.+++++.. +++++.|+.+++||+......    .....+|.
T Consensus       106 ~d~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~----~~~~~~~~  171 (340)
T 4aow_A          106 WDGTLRLWDLT---------TGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKY----TVQDESHS  171 (340)
T ss_dssp             TTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEE----EECSSSCS
T ss_pred             ccccceEEeec---------ccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceE----EEEecccc
Confidence            99999999988         55666777788889999999999984 777789999999998743221    22233567


Q ss_pred             cceeeeEECCCCC--cEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          169 HYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       169 ~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      ..+..++|++++.  .+++++.|+.|++||+++++....+. +|   |.+++|+|+++ +|++|+.|+.|++||++. .+
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~-~~  248 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE-GK  248 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTT-TE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEecc-Cc
Confidence            7899999988754  46788899999999999988777766 44   99999999998 899999999999999997 66


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                      ++..+.. ...|.++.|+|++  .+++++.|+.|++||++........          ...........|...|++++|+
T Consensus       249 ~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~s  315 (340)
T 4aow_A          249 HLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDEL----------KQEVISTSSKAEPPQCTSLAWS  315 (340)
T ss_dssp             EEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEE----------CCC-------CCCCCEEEEEEC
T ss_pred             eeeeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEec----------cccceeeeccCCCCCEEEEEEC
Confidence            7777764 5689999999986  4556777999999999871100000          0011122334688899999999


Q ss_pred             CCCCceEEEeeeCCeEEEeecCc
Q 018697          324 SREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |+++ +|++|+.||.|+|||+++
T Consensus       316 ~dg~-~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          316 ADGQ-TLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TTSS-EEEEEETTSCEEEEEEEC
T ss_pred             CCCC-EEEEEeCCCEEEEEeCCC
Confidence            9999 899999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=280.21  Aligned_cols=317  Identities=15%  Similarity=0.240  Sum_probs=231.9

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe-EEEEeeecCCcceeeeeeCCC-CCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCPF-DQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+..+.++++...++.|.    .++.+++|++...... .....+.+|...|.+++|+|+ +..|+++    +.|+.|++
T Consensus        69 ~v~~~~~s~~~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~dg~v~i  140 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGAL----DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG----GNNGEIFI  140 (416)
T ss_dssp             CEEEEEECSSSSCEEEEE----SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE----CSSSCEEB
T ss_pred             ceEEEEECCCCCeEEEEc----cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE----cCCCeEEE
Confidence            456677788888888775    4789999998873221 245667889999999999998 5666663    79999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~  174 (351)
                      ||+.................+..|...|.+++|+|++..++++++.|+.|++||+.++.....+... ...+|...+.++
T Consensus       141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred             EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence            9998321000000011223346799999999999996555777788999999999875433322221 112235689999


Q ss_pred             EECCCC-CcEEEeecCC---eEEEEEcccC-CcCceeecce---eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcce
Q 018697          175 AWDPHD-VNAVAATCES---SVQFWDLRSM-GKTNSIEHAH---VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       175 ~~~~~~-~~l~~~~~d~---~i~iwd~~~~-~~~~~~~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      +|+|++ ..+++++.|+   .|++||++++ .....+...|   +.+++|+| ++. +|++++.|+.|++||+++ .+++
T Consensus       221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~-~~~~  298 (416)
T 2pm9_A          221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES-AEQL  298 (416)
T ss_dssp             EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS-CCEE
T ss_pred             EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC-Cccc
Confidence            999997 4678888888   9999999986 4444444134   99999999 776 899999999999999998 6788


Q ss_pred             eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc---ccccCC--------------cccccccce
Q 018697          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE---SLVESP--------------NQRANSLLN  308 (351)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~--------------~~~~~~~~~  308 (351)
                      ..+..|...|.+++|+|+++.+|++++.|+.|++||+...........   .....+              ....... .
T Consensus       299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  377 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-Q  377 (416)
T ss_dssp             EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-C
T ss_pred             eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-c
Confidence            999999999999999999878999999999999999987543322111   000000              0000011 2


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ....|..++.+++|+|+|+ +|++++.|+.|+||++.+
T Consensus       378 ~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          378 APTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCC
T ss_pred             CCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEecc
Confidence            2233677888999999998 899999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-37  Score=264.14  Aligned_cols=252  Identities=15%  Similarity=0.191  Sum_probs=199.0

Q ss_pred             EEeeecCCcceeeeee-----CC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC
Q 018697           58 CEGLFSHPNEIWDLSS-----CP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS  131 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~-----~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  131 (351)
                      ...+.+|.+.|++++|     ++ +++.|+++    +.|++|++|++.....  ......+...+.+|...|.+++|+|+
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sg----s~D~~v~iWd~~~~~~--~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISG----SRDKTVMIWKLYEEEQ--NGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEE----ETTSCEEEEEECSSCC--SSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEE----cCCCEEEEEECCcCCc--ccccccccchhccCCCceEEEEECCC
Confidence            3567899999999999     76 77777774    7999999999873110  00123566788999999999999999


Q ss_pred             CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cc
Q 018697          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HA  209 (351)
Q Consensus       132 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~  209 (351)
                      +.. +++++.|++|++||+.++.....     ..+|...|.+++|+|++++|++++.|+.|++||+.... .....  ..
T Consensus        88 ~~~-l~s~s~D~~v~lwd~~~~~~~~~-----~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~  160 (343)
T 2xzm_R           88 NCF-AISSSWDKTLRLWDLRTGTTYKR-----FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKEN  160 (343)
T ss_dssp             TTE-EEEEETTSEEEEEETTSSCEEEE-----EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTS
T ss_pred             CCE-EEEEcCCCcEEEEECCCCcEEEE-----EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccC
Confidence            983 66778999999999987543322     23677799999999999999999999999999997432 22221  12


Q ss_pred             e---eEEEEcCCCCC---------cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          210 H---VRNVDYDTKKK---------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       210 ~---v~~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      |   +.+++|+|++.         .++++++.|+.|++||.+  .+....+.+|...|.+++|+|++ .+|++++.|+.|
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v  237 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKL  237 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEE
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeE
Confidence            3   99999999872         279999999999999954  55677888999999999999999 999999999999


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++||+...                  ..+...+ .+...|.+++|+|++. +++ ++.|+.|++|++.+
T Consensus       238 ~iwd~~~~------------------~~~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          238 LIWDILNL------------------TYPQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMT  285 (343)
T ss_dssp             EEEESSCC------------------SSCSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSS
T ss_pred             EEEECCCC------------------cccceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCC
Confidence            99999541                  3333333 3445699999999987 554 55688999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-36  Score=268.35  Aligned_cols=264  Identities=16%  Similarity=0.214  Sum_probs=217.2

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      .++.|++|+..... ......+.+|...|++++|+|++++|+++    +.|+.|+|||+.         +.+.+..+.+|
T Consensus       123 ld~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg~~lasg----s~Dg~v~iWd~~---------~~~~~~~~~~h  188 (420)
T 4gga_A          123 LDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEGNYLAVG----TSSAEVQLWDVQ---------QQKRLRNMTSH  188 (420)
T ss_dssp             ETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TTEEEEEECCC
T ss_pred             eCCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCCCEEEEE----ECCCeEEEEEcC---------CCcEEEEEeCC
Confidence            47899999987642 23334456788999999999999998885    799999999998         67888999999


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      ...+.++.+++  . ++++++.|+.+++||.........    ...+|...+..+.|+|+++.+++++.|+.+++||..+
T Consensus       189 ~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~----~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          189 SARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVA----TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             SSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             CCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeE----EecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            99999998864  3 466678999999999885433322    2336777999999999999999999999999999987


Q ss_pred             CCcCce---eecce---eEEEEcCCCCCcEEEE--ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          200 MGKTNS---IEHAH---VRNVDYDTKKKHLLVT--AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       200 ~~~~~~---~~~~~---v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      ++....   ....+   |.+++|+|.+..++++  |+.|+.|++||+++ ++++..+.. ...+.++.|+|++ ..++++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~-~~~v~~~~~~~~~-~~lv~~  338 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDA-HSQVCSILWSPHY-KELISG  338 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEEC-SSCEEEEEEETTT-TEEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeecc-ccceeeeeecCCC-CeEEEE
Confidence            754321   12233   9999999998877765  45899999999997 667777764 4678899999999 666654


Q ss_pred             e--CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          272 G--TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       272 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +  .|+.|+|||+.+                   ++++.++.+|...|++++|+|+|+ +|++|+.|++|++||+.+.
T Consensus       339 sg~~d~~I~iwd~~~-------------------~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          339 HGFAQNQLVIWKYPT-------------------MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             ECTTTCCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred             EecCCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence            4  799999999998                   899999999999999999999999 8999999999999998654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3e-38  Score=279.32  Aligned_cols=275  Identities=13%  Similarity=0.136  Sum_probs=199.1

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ....+|...|++|+|+|.+..++++   |+.||.|+|||+..       ........+.+|.+.|++|+|+|.+..++++
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~las---Gs~dg~i~lWd~~~-------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAV---GSKGGDIMLWNFGI-------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEE---EETTSCEEEECSSC-------CSCCEEECCCSSSCCCCEEEECSSCTTEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEE---EeCCCEEEEEECCC-------CCceeEEEccCCCCCEEEEEEeCCCCCEEEE
Confidence            3456789999999999976665555   58999999999872       2334455667899999999999854445777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      ++.|++|++||+++.. . .... ....+...+.+++|+|++.+|++++.||.|++||++. +.+..+. .|   |.+++
T Consensus       183 ~s~D~~v~iwd~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~  257 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNI-L-RVFA-SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVA  257 (435)
T ss_dssp             ECSSSCEEEEETTSCE-E-EEEE-CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEE
T ss_pred             EeCCCEEEEeeccCCc-e-eEEe-ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeee
Confidence            7999999999997532 1 1111 1123344688999999999999999999999999975 4455554 44   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC---
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL---  290 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---  290 (351)
                      |+|+++.++++|+.|+.|++||++....  .+....+|..+|++++|+|++ .+|++++.|+.|++||++.......   
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEec
Confidence            9999987899999999999999987432  223345799999999999999 9999999999999999986432100   


Q ss_pred             ----------CCcc----------ccc------------------CCcccccccceee-ccccceEEEE-EeCCCCCceE
Q 018697          291 ----------PSES----------LVE------------------SPNQRANSLLNSY-SDYEDSVYGL-AWSSREPWIF  330 (351)
Q Consensus       291 ----------~~~~----------~~~------------------~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~l  330 (351)
                                ....          ...                  .++...++.+..+ .+|...|.++ +|+|+|. +|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~l  415 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TL  415 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EE
Confidence                      0000          000                  0111223334343 3577778887 6999998 78


Q ss_pred             EEeeeCCeEEEeecCcccccC
Q 018697          331 ASLSYDGRVVVESVKPFLSRK  351 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~~~~~~  351 (351)
                      ++|+ |+.|+||++++..++|
T Consensus       416 asg~-d~~i~iW~~~~gk~rK  435 (435)
T 4e54_B          416 ASAM-GYHILIWSQQEARTRK  435 (435)
T ss_dssp             EEEC-SSEEEECCCC------
T ss_pred             EEEc-CCcEEEEECCcCeeeC
Confidence            8776 8899999999887776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4e-37  Score=263.55  Aligned_cols=275  Identities=15%  Similarity=0.182  Sum_probs=212.2

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~  136 (351)
                      ..+.+|.+.|.+++|+|+++.|+++    +.|+.|++|++...     ....+....+.+|...|.+++|+|.  +. ++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l   74 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATC----SSDQHIKVFKLDKD-----TSNWELSDSWRAHDSSIVAIDWASPEYGR-II   74 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEE----ETTSEEEEEEECSS-----SCCEEEEEEEECCSSCEEEEEECCGGGCS-EE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEe----eCCCeEEEEECCCC-----CCcceecceeccCCCcEEEEEEcCCCCCC-EE
Confidence            3456899999999999999988885    68999999999731     1123567778899999999999994  66 47


Q ss_pred             EEEecCCcEEEEEcCCCCCCcc----cccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcCceeec--
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQ----VQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEH--  208 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--  208 (351)
                      ++++.|+.|++||+.++.....    .......+|...|.+++|+|+  +.++++++.|+.|++||+++++.+..+..  
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  154 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS  154 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred             EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence            7778999999999987542210    112223467779999999999  99999999999999999998876655431  


Q ss_pred             ----------ce---eEEEEcCCC---CCcEEEEecCCCeEEEEecccCCcc--eeEeeCCCCceeEEEecCCCC---Ce
Q 018697          209 ----------AH---VRNVDYDTK---KKHLLVTAADESGIHLWDLRMLKAP--IQELPGHTHWTWAVCCNPEYD---GF  267 (351)
Q Consensus       209 ----------~~---v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~---~~  267 (351)
                                .+   +.+++|+|+   +. ++++++.++.+.+|+... ...  +..+.+|...|++++|+|++.   .+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          155 EMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             EEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred             cccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence                      22   899999997   66 899999999998777765 433  667778999999999999973   58


Q ss_pred             EEEeeCCCeEEEEEcCCCCCCCCCCcc---------------------------cccCCcccccccceeeccccceEEEE
Q 018697          268 ILSAGTDSTVNLWLVSTSNHDELPSES---------------------------LVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       268 l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      |++++.||.|++||++...........                           ....+.....+++..+.+|...|+++
T Consensus       233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  312 (351)
T 3f3f_A          233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV  312 (351)
T ss_dssp             EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE
T ss_pred             EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE
Confidence            999999999999999864221110000                           00001112246677788899999999


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          321 AWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +|+|+++ +|++++.||.|++|++..
T Consensus       313 ~~s~~~~-~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          313 SWNLTGT-ILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             EEcCCCC-EEEEecCCCcEEEEecCc
Confidence            9999998 899999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9e-37  Score=267.14  Aligned_cols=263  Identities=16%  Similarity=0.196  Sum_probs=217.6

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      .++.|++|++....  ........|...|.+++|+|++..|+++    +.|+.|++|++.         ..+.+..+..|
T Consensus       111 ~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~---------~~~~~~~~~~~  175 (401)
T 4aez_A          111 LERNVYVWNADSGS--VSALAETDESTYVASVKWSHDGSFLSVG----LGNGLVDIYDVE---------SQTKLRTMAGH  175 (401)
T ss_dssp             ETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEEEECCC
T ss_pred             CCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCCCCEEEEE----CCCCeEEEEECc---------CCeEEEEecCC
Confidence            57899999987643  2223333489999999999999888885    689999999998         56788889999


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      ...|.+++|++  . .+++++.|+.|++||+.........    ..+|...|.+++|+|+++.|++++.|+.|++||+++
T Consensus       176 ~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          176 QARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGT----LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             SSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeE----EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence            99999999954  3 4777799999999999854332222    235677999999999999999999999999999999


Q ss_pred             CCcCceeecce--eEEEEcCCCCCcEEEEec--CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE--eeC
Q 018697          200 MGKTNSIEHAH--VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS--AGT  273 (351)
Q Consensus       200 ~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~  273 (351)
                      ++....+....  +.+++|+|++..++++++  .|+.|++||+++ .+++..+. +...|.+++|+|++ .++++  |+.
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~  325 (401)
T 4aez_A          249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFP  325 (401)
T ss_dssp             SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECTT
T ss_pred             CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCC-CeEEEEeecC
Confidence            88777665222  999999999887888866  799999999997 66777776 67889999999999 88888  458


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCccccccc--ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |+.|++||+..                   +..  ...+.+|...|.+++|+|+++ +|++++.||.|++|++.+.
T Consensus       326 dg~i~v~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          326 DNNLSIWSYSS-------------------SGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             TCEEEEEEEET-------------------TEEEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC-
T ss_pred             CCcEEEEecCC-------------------ccceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence            99999999987                   433  334678999999999999999 8999999999999999753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.5e-37  Score=266.03  Aligned_cols=280  Identities=12%  Similarity=0.140  Sum_probs=215.7

Q ss_pred             ceeEeeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC-CCCceEEEEeecCCcce
Q 018697           15 QARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYG   92 (351)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~   92 (351)
                      ....+..+.++++. ..++.|.    .++.|++|++...... ......+|...|.+++|+| ++..|+++    +.|+.
T Consensus        72 h~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~d~~  142 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHPTTVAVGS----KGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLFVS----SIRGA  142 (383)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEE----BTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEEEE----ETTTE
T ss_pred             CCCCEEEEEECCCCCCEEEEEc----CCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEEEE----eCCCE
Confidence            34567778888887 6777764    4789999999865432 2233457999999999999 55666664    78999


Q ss_pred             EEEEEcccccCCCCCCcceeeeee---eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           93 AAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      |++||+.         . ..+..+   ..|...|.+++|+|++.. +++++.|+.|++||+. +....     ...+|..
T Consensus       143 i~iwd~~---------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-~~~~~-----~~~~h~~  205 (383)
T 3ei3_B          143 TTLRDFS---------G-SVIQVFAKTDSWDYWYCCVDVSVSRQM-LATGDSTGRLLLLGLD-GHEIF-----KEKLHKA  205 (383)
T ss_dssp             EEEEETT---------S-CEEEEEECCCCSSCCEEEEEEETTTTE-EEEEETTSEEEEEETT-SCEEE-----EEECSSS
T ss_pred             EEEEECC---------C-CceEEEeccCCCCCCeEEEEECCCCCE-EEEECCCCCEEEEECC-CCEEE-----EeccCCC
Confidence            9999997         2 333344   345588999999999984 6777899999999995 22211     2235677


Q ss_pred             ceeeeEECCCCC-cEEEeecCCeEEEEEcccC----CcCceeecce-eEEEEcCC-CCCcEEEEecCCCeEEEEecccCC
Q 018697          170 YLSGGAWDPHDV-NAVAATCESSVQFWDLRSM----GKTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       170 ~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      .|.+++|+|+++ .+++++.|+.|++||+++.    ..+..+.... +.+++|+| ++. +|++++.|+.|++||+++ .
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~-~  283 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYD-W  283 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTB-T
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCC-C
Confidence            999999999999 7889999999999999983    3444443223 99999999 888 899999999999999997 4


Q ss_pred             cceeEeeCCC-----------------CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccc
Q 018697          243 APIQELPGHT-----------------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (351)
Q Consensus       243 ~~~~~~~~~~-----------------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (351)
                      .....+..|.                 ..+..++|+|++ .+  +++.|+.|++||+.+                   ++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~-------------------~~  341 (383)
T 3ei3_B          284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANS-------------------GG  341 (383)
T ss_dssp             TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTT-------------------CC
T ss_pred             ccccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCC-------------------Cc
Confidence            4555555443                 234446777777 55  788999999999998                   78


Q ss_pred             cceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          306 LLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       306 ~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++..+.+  |...+..++|+|+++ +|++++ |+.|++|++++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            8888876  456777789999999 888887 99999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-37  Score=265.15  Aligned_cols=255  Identities=18%  Similarity=0.293  Sum_probs=206.4

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~  136 (351)
                      ..+.+|.+.|.+++|+|+++.|+++    +.|+.|+||++.       ....+.+..+.+|...|.+++|+++  +. ++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~----~~dg~i~iw~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l   72 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATC----SSDKTIKIFEVE-------GETHKLIDTLTGHEGPVWRVDWAHPKFGT-IL   72 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEE----ETTSCEEEEEEE-------TTEEEEEEEECCCSSCEEEEEECCGGGCS-EE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEE----ECCCcEEEEecC-------CCcceeeeEecCCCCcEEEEEeCCCCCCC-EE
Confidence            4567899999999999999988875    689999999997       2355777888999999999999977  66 46


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcCceee-cce---
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIE-HAH---  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~---  210 (351)
                      ++++.|+.|++||+.++...   .......|...|.+++|+|+  +..+++++.|+.|++||++++....... ..|   
T Consensus        73 ~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           73 ASCSYDGKVLIWKEENGRWS---QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEE---EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             EEeccCCEEEEEEcCCCcee---EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            77789999999999864311   11222346679999999999  8999999999999999999875443332 233   


Q ss_pred             eEEEEcCC-------------CCCcEEEEecCCCeEEEEecccCCc---ceeEeeCCCCceeEEEecCC---CCCeEEEe
Q 018697          211 VRNVDYDT-------------KKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPE---YDGFILSA  271 (351)
Q Consensus       211 v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~s~  271 (351)
                      +.+++|+|             ++. ++++++.|+.|++||++....   ....+.+|...|.+++|+|+   + .+|+++
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~  227 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASV  227 (379)
T ss_dssp             EEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEE
Confidence            99999999             576 899999999999999986432   44567789999999999999   7 999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +.||.|++||++......              ...+.....|...|++++|+|+++ +|++++.||.|++|++.
T Consensus       228 ~~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ETTSCEEEEEESSTTSCC--------------EEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccc--------------eeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCC
Confidence            999999999998721000              112223345788999999999999 89999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=249.85  Aligned_cols=277  Identities=15%  Similarity=0.183  Sum_probs=219.6

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      +.++++. .+++|     .++.|++|++... ..+......+|...|.+++|+|+++.|+++    +.|++|++|++.  
T Consensus        31 l~WS~~~-~lAvg-----~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sg----s~Dg~v~iw~~~--   97 (318)
T 4ggc_A           31 VDWSSGN-VLAVA-----LDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVG----TSSAEVQLWDVQ--   97 (318)
T ss_dssp             EEECTTS-EEEEE-----ETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEE----ETTSEEEEEETT--
T ss_pred             EEECCCC-EEEEE-----eCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEE----ECCCcEEEeecC--
Confidence            3345543 45554     3789999998764 233334456788999999999999998885    799999999998  


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV  181 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  181 (351)
                             +.+.+..+.+|...+.++.+.+  . ++++++.++.+++|+..........    ..+|...+..+.+.++++
T Consensus        98 -------~~~~~~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A           98 -------QQKRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVAT----LSGHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             -------TTEEEEEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEE----EECCSSCEEEEEECTTSS
T ss_pred             -------CceeEEEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeEEE----EcCccCceEEEEEcCCCC
Confidence                   6788899999999988776654  3 3666688999999998864433222    235677899999999999


Q ss_pred             cEEEeecCCeEEEEEcccCCcCceee---cce---eEEEEcCCCCCcEE--EEecCCCeEEEEecccCCcceeEeeCCCC
Q 018697          182 NAVAATCESSVQFWDLRSMGKTNSIE---HAH---VRNVDYDTKKKHLL--VTAADESGIHLWDLRMLKAPIQELPGHTH  253 (351)
Q Consensus       182 ~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~---v~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (351)
                      ++++++.|+.|++||+++++......   ..+   +.+++++|++..++  ++++.++.|++||.+. ..... ...+..
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~~~~  241 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVDAHS  241 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEECSS
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-ccccee
Confidence            99999999999999999876433221   122   89999999887655  4567889999999986 43333 345778


Q ss_pred             ceeEEEecCCCCCeEEEe--eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEE
Q 018697          254 WTWAVCCNPEYDGFILSA--GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA  331 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  331 (351)
                      .+..+.|+|.+ ..++++  +.|+.|++||+++                   ++++.++.+|...|++++|+|+++ +|+
T Consensus       242 ~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~-------------------~~~~~~l~gH~~~V~~l~~spdg~-~l~  300 (318)
T 4ggc_A          242 QVCSILWSPHY-KELISGHGFAQNQLVIWKYPT-------------------MAKVAELKGHTSRVLSLTMSPDGA-TVA  300 (318)
T ss_dssp             CEEEEEEETTT-TEEEEEECTTTCCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEE
T ss_pred             eeeeeeecccc-cceEEEEEcCCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEcCCCC-EEE
Confidence            89999999999 665554  4799999999998                   899999999999999999999999 899


Q ss_pred             EeeeCCeEEEeecCccc
Q 018697          332 SLSYDGRVVVESVKPFL  348 (351)
Q Consensus       332 s~~~dg~v~vw~~~~~~  348 (351)
                      +++.||+|+|||+.+..
T Consensus       301 S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          301 SAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTEEEEECCSCCC
T ss_pred             EEecCCeEEEEECCCCC
Confidence            99999999999997654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.7e-38  Score=271.00  Aligned_cols=246  Identities=12%  Similarity=0.165  Sum_probs=194.7

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ..|.+.|.+++|+|+++.|++    ++.|+.|++|++..       ...+.+..+.+|...|.+++|+|+++. +++++.
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~----~~~d~~i~iw~~~~-------~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~   75 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVT----TTATNQVELYEQDG-------NGWKHARTFSDHDKIVTCVDWAPKSNR-IVTCSQ   75 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEEC----CCSSSCBCEEEEET-------TEEEECCCBCCCSSCEEEEEECTTTCC-EEEEET
T ss_pred             ecCCCcEEEEEECCCCCEEEE----ecCCCEEEEEEccC-------CceEEEEEEecCCceEEEEEEeCCCCE-EEEEeC
Confidence            346789999999999988877    47999999999982       122677888999999999999999984 777789


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc---Cceeecce---eEEEE
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRNVD  215 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~---v~~~~  215 (351)
                      |+.|++||+.++......  ....+|...|.+++|+|+++.|++++.|+.|++||+++++.   ...+...|   |.+++
T Consensus        76 d~~v~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQT--LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             TSSEEEC------CCCCE--EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             CCeEEEEEcCCCCceeee--eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            999999999975411111  12235677999999999999999999999999999998763   55555325   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccC-----------------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRML-----------------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      |+|+++ +|++++.|+.|++||++..                 .+++..+ .|...|.+++|+|++ .+|++++.|+.|+
T Consensus       154 ~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~  230 (377)
T 3dwl_C          154 WHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVT  230 (377)
T ss_dssp             ECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC
T ss_pred             EcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEE
Confidence            999998 8999999999999998521                 2345555 899999999999999 9999999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCccccccc----ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSL----LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +||++.                   ++.    +..+..|...|.+++|+|+++ +|++++.|+.+ +|+..
T Consensus       231 iwd~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          231 IAYPSA-------------------PEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -CEECS-------------------TTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred             EEECCC-------------------CCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence            999998                   555    788889999999999999998 78888766666 66654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-38  Score=271.60  Aligned_cols=307  Identities=14%  Similarity=0.107  Sum_probs=216.6

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ..+..+.++++...++.|+    .++.|++|++.... ......+.+|...|.+++|+|+++.|+++    +.|+.|++|
T Consensus        12 ~~v~~~~~s~~g~~l~~~~----~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s~d~~v~vw   82 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTT----ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTC----SQDRNAYVY   82 (377)
T ss_dssp             SCCSCCEECSSSSEEECCC----SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEE----ETTSSEEEC
T ss_pred             CcEEEEEECCCCCEEEEec----CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEE----eCCCeEEEE
Confidence            3577788888888888764    57899999998642 13345677899999999999999988885    689999999


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      |+...      ........+..|...|.+++|+|+++. +++++.|+.|++||+.++...... ......|...|.+++|
T Consensus        83 d~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           83 EKRPD------GTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVS-KHLKRPLRSTILSLDW  154 (377)
T ss_dssp             ------------CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCC-EEECSSCCSCEEEEEE
T ss_pred             EcCCC------CceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceee-eEeecccCCCeEEEEE
Confidence            99821      012356777889999999999999985 777788999999999875431111 1111126779999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccC------------------CcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEe
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSM------------------GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD  237 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~------------------~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d  237 (351)
                      +|++++|++++.|+.|++||++..                  +....+.... |.+++|+|+++ +|++++.|+.|++||
T Consensus       155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAY  233 (377)
T ss_dssp             CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS-CEEEEETTTEEC-CE
T ss_pred             cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC-EEEEEeCCCcEEEEE
Confidence            999999999999999999999632                  2233331112 99999999998 799999999999999


Q ss_pred             cccCCcc----eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC---C--Ccccc-----------c
Q 018697          238 LRMLKAP----IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL---P--SESLV-----------E  297 (351)
Q Consensus       238 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~--~~~~~-----------~  297 (351)
                      ++. .+.    +..+..|..+|.+++|+|++ .+|++++.++.+ +|+.........   .  .....           .
T Consensus       234 ~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (377)
T 3dwl_C          234 PSA-PEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE  310 (377)
T ss_dssp             ECS-TTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred             CCC-CCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence            997 444    77888999999999999999 899998877665 676653221000   0  00000           0


Q ss_pred             --CC-------cc-----c---ccccceeeccccceEEEEEeCCCCCc---eEEEeeeCCeEEEeec
Q 018697          298 --SP-------NQ-----R---ANSLLNSYSDYEDSVYGLAWSSREPW---IFASLSYDGRVVVESV  344 (351)
Q Consensus       298 --~~-------~~-----~---~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~dg~v~vw~~  344 (351)
                        ..       ..     .   ..........|...|+++++.+....   .|+|++.||.|++||+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence              00       00     0   00111122349999999998775543   5999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.2e-36  Score=254.50  Aligned_cols=286  Identities=13%  Similarity=0.135  Sum_probs=225.5

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      ....+..+.+++++..++++..    .+.+.   .+............+|...|.+++|+|+++.++++    + |+.|+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~-dg~i~   75 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFP----PDALI---GPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG----G-KGCVK   75 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCC----TTSSS---STTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEE----C-BSEEE
T ss_pred             cCCceeEEEECCCCCEEEeecC----CCcEe---ccccCCccccceeccCCCceEEEEEecCCcEEEEc----C-CCeEE
Confidence            4566777888899888876641    22221   12222333344556899999999999999888874    5 99999


Q ss_pred             EEEcccccCCCCCCcceeeeeee--ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           95 IWQIPELYGQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      +|++....      ....+..+.  .|...|.+++|+|+++. +++++.|+.|++||+.++.....   .....|...+.
T Consensus        76 iw~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~i~  145 (337)
T 1gxr_A           76 VWDISHPG------NKSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIK---AELTSSAPACY  145 (337)
T ss_dssp             EEETTSTT------CCSCSEEEECSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEE---EEEECSSSCEE
T ss_pred             EEECCCCC------ceeeeecccccCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCCccee---eecccCCCceE
Confidence            99997311      112233333  78999999999999984 66678899999999986542111   12234566899


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      +++|+|+++.+++++.|+.|++||+++++....+....  +.+++|+|+++ ++++++.|+.|++||++. .+.+..+. 
T Consensus       146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~-  222 (337)
T 1gxr_A          146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD-  222 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCC-CceEeeec-
Confidence            99999999999999999999999999988777776322  99999999998 899999999999999997 55666654 


Q ss_pred             CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceE
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  330 (351)
                      +...+.+++|+|++ .+|++++.|+.|++||++.                   .+ ...+..|...|.+++|+|+++ +|
T Consensus       223 ~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~-------------------~~-~~~~~~~~~~v~~~~~~~~~~-~l  280 (337)
T 1gxr_A          223 FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNK-------------------PD-KYQLHLHESCVLSLKFAYCGK-WF  280 (337)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-------------------SC-EEEECCCSSCEEEEEECTTSS-EE
T ss_pred             CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------CC-eEEEcCCccceeEEEECCCCC-EE
Confidence            78899999999999 9999999999999999987                   44 345678899999999999999 89


Q ss_pred             EEeeeCCeEEEeecCcc
Q 018697          331 ASLSYDGRVVVESVKPF  347 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~~  347 (351)
                      ++++.||.|++|+++..
T Consensus       281 ~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEEETTSEEEEEETTTC
T ss_pred             EEecCCCcEEEEECCCC
Confidence            99999999999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=276.14  Aligned_cols=256  Identities=12%  Similarity=0.082  Sum_probs=195.6

Q ss_pred             ecCCcceeeeeeCCCC---------CceEEEEe---------------ecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           62 FSHPNEIWDLSSCPFD---------QRIFSTVF---------------STGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~---------~~l~~~~~---------------~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      ..+.+.|.+++|+|++         ++|+++..               +++.|++|+||++...     .........+.
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~-----~~~~~~~~~l~  204 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS-----TLHCVKVQTIV  204 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETT-----TCCEEEEEEEE
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-----CCCceEEEEEE
Confidence            3478999999999986         56665432               2568899999998721     00111234566


Q ss_pred             ccccceeEEEecCCC-----CCcEEEEecCCcEEEEEcCCCCCCcc----c--ccccccCcccceeeeEECCCCCcEEEe
Q 018697          118 AHVGKINCVLWWSSG-----RHDKLVSIDEENIFLWSLDCSNKNAQ----V--QSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~-----~~~~~~~~~d~~v~iwd~~~~~~~~~----~--~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                      .|.+.|.+++|+|++     ..++++++.|++|++||+..+.....    .  ......+|...|.+++|+++ ..|++|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg  283 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG  283 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE
Confidence            788999999999972     23466668999999999986532210    0  01123467779999999985 479999


Q ss_pred             ecCCeEEEEEcccCCcCc-eeecce---eEEE--EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC--ceeEE
Q 018697          187 TCESSVQFWDLRSMGKTN-SIEHAH---VRNV--DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAV  258 (351)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~-~~~~~~---v~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~  258 (351)
                      +.||+|++||++++.... .+. .|   |.++  +|+|++..+|++++.|++|+|||+++ .+++..+.+|..  .|.++
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCE
T ss_pred             eCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccccccccccCcccce
Confidence            999999999999875443 344 45   9998  67888733899999999999999997 556666766653  58899


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCe
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR  338 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  338 (351)
                      +|+|++ ..+++++.|++|++||++.                   +.++.++.+|...|++++|+|+++ +|++|+.|++
T Consensus       362 ~fsp~~-~~l~s~~~d~tv~lwd~~~-------------------~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgt  420 (524)
T 2j04_B          362 VYCPQI-YSYIYSDGASSLRAVPSRA-------------------AFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGS  420 (524)
T ss_dssp             EEETTT-TEEEEECSSSEEEEEETTC-------------------TTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTE
T ss_pred             EeCCCc-CeEEEeCCCCcEEEEECcc-------------------cccceeeecCCCceEEEEeCCCCC-eEEEEECCCE
Confidence            999999 8899999999999999998                   777888889999999999999999 8999999999


Q ss_pred             EEEeecCc
Q 018697          339 VVVESVKP  346 (351)
Q Consensus       339 v~vw~~~~  346 (351)
                      |++|++..
T Consensus       421 v~lwd~~~  428 (524)
T 2j04_B          421 LIITNAAR  428 (524)
T ss_dssp             EECCBSCS
T ss_pred             EEEEechH
Confidence            99999753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-36  Score=262.84  Aligned_cols=247  Identities=12%  Similarity=0.151  Sum_probs=208.6

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ..|.+.|.+++|+|+++.|+++    +.|+.|++|++..       ...+.+..+.+|...|.+++|+|+++. +++++.
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~----~~d~~v~i~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~   72 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAIC----PNNHEVHIYEKSG-------NKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGT   72 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEE----CSSSEEEEEEEET-------TEEEEEEEEECCSSCEEEEEEETTTTE-EEEEET
T ss_pred             cccCCCeEEEEECCCCCEEEEE----eCCCEEEEEeCCC-------CcEEeeeeecCCCCcccEEEEeCCCCE-EEEEcC
Confidence            4589999999999999888875    7899999999982       122378889999999999999999984 667788


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc---Cceeecce---eEEEE
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRNVD  215 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~---v~~~~  215 (351)
                      |+.|++||+.++......   ....|...+.+++|+|+++++++++.|+.|++||++.+..   ...+...|   +.+++
T Consensus        73 dg~i~vwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTL---VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             TSCEEEEEEETTEEEEEE---ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             CCeEEEEECCCCeeeeeE---EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            999999999764322111   1234566899999999999999999999999999998764   23333344   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEeccc-----------------CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRM-----------------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      |+|++. ++++++.|+.|++||++.                 ..+++..+..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       150 ~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~  227 (372)
T 1k8k_C          150 WHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVC  227 (372)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             EcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEE
Confidence            999998 899999999999999641                 245778888999999999999999 9999999999999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +||++.                   ++++..+..|...|.+++|+|++. +++++ .|+.|++|++..
T Consensus       228 i~d~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          228 LADADK-------------------KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEGGG-------------------TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             EEECCC-------------------CceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence            999998                   888889999999999999999987 67766 899999999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=250.76  Aligned_cols=282  Identities=14%  Similarity=0.155  Sum_probs=227.0

Q ss_pred             ccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCc
Q 018697           11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES   90 (351)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d   90 (351)
                      .+..+...+..+.+ ++...++.|+    .++.+++|++...   .....+..|...|.+++|+|+++.|+++    +.|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~----~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d   80 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVS----RDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFG----GKD   80 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEE----TTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEE----ETT
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEE----cCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEe----cCC
Confidence            34444455666666 6777777764    6899999999553   2345667899999999999999988885    689


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      +.|++|++...      ...+.+..+..|...|.+++|.  +. .+++++.|+.|++||..  . ...    ....|...
T Consensus        81 g~i~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d~~--~-~~~----~~~~~~~~  144 (313)
T 3odt_A           81 TMINGVPLFAT------SGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWKEG--S-LVY----NLQAHNAS  144 (313)
T ss_dssp             SCEEEEETTCC------TTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETT--E-EEE----EEECCSSC
T ss_pred             CeEEEEEeeec------CCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEcCC--c-EEE----ecccCCCc
Confidence            99999998731      1335667788999999999993  44 47777899999999922  1 111    22245668


Q ss_pred             eeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018697          171 LSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       171 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                      +.++.|.| +++.+++++.|+.|++||..  +....+...+   +.+++|+|++.  +++++.|+.|++||+++ .+++.
T Consensus       145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~-~~~~~  219 (313)
T 3odt_A          145 VWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT-GDVLR  219 (313)
T ss_dssp             EEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTT-CCEEE
T ss_pred             eeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCc-hhhhh
Confidence            99999988 88999999999999999943  3444444323   99999999986  78899999999999997 67889


Q ss_pred             EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                      .+..|...|++++|+|++  .|++++.|+.|++||++.                   ++++..+..|...|.+++|+|++
T Consensus       220 ~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKEN-------------------GSLKQVITLPAISIWSVDCMSNG  278 (313)
T ss_dssp             EEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTT-------------------CCEEEEEECSSSCEEEEEECTTS
T ss_pred             hhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCC-------------------CceeEEEeccCceEEEEEEccCC
Confidence            999999999999999998  488999999999999998                   88888999999999999999999


Q ss_pred             CceEEEeeeCCeEEEeecCccc
Q 018697          327 PWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      +  +++++.||.|++|++++..
T Consensus       279 ~--~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          279 D--IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             C--EEEEETTSCEEEEESCGGG
T ss_pred             C--EEEEeCCCcEEEEeCCCCc
Confidence            7  5568899999999998643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-36  Score=263.57  Aligned_cols=256  Identities=14%  Similarity=0.186  Sum_probs=209.6

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC----C-
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS----G-  132 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~-  132 (351)
                      ...+.+|.+.|.+++|+|  +.|+++    +.|+.|++|++.....   ......+..+..|...|.+++|+|+    + 
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~----~~dg~i~iw~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~   79 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSC----SGDGYLKVWDNKLLDN---ENPKDKSYSHFVHKSGLHHVDVLQAIERDAF   79 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEE----ETTSEEEEEESBCCTT---CCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEE----cCCCEEEEEECCCccc---ccCCCcceEEecCCCcEEEEEEecccccCCc
Confidence            355678999999999999  566664    7899999999983110   1113367788899999999999999    7 


Q ss_pred             --CCcEEEEecCCcEEEEEcCCCCCCcccccccccCc-----ccceeeeEEC----CCCCc-EEEeecCCeEEEEEccc-
Q 018697          133 --RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM-----LHYLSGGAWD----PHDVN-AVAATCESSVQFWDLRS-  199 (351)
Q Consensus       133 --~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~-  199 (351)
                        . ++++++.|+.|++||+.++.............|     ...|.+++|+    |+++. |++++.|+.|++||+++ 
T Consensus        80 ~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           80 ELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             ccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence              6 366778899999999997654222222223344     4689999999    99999 99999999999999998 


Q ss_pred             -----CCcCc-----eeec------ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC---C---CCc
Q 018697          200 -----MGKTN-----SIEH------AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---H---THW  254 (351)
Q Consensus       200 -----~~~~~-----~~~~------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~  254 (351)
                           ++.+.     .+..      .+   +.+++|+|++  ++++++.|+.|++||+++ .+++..+..   |   ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCc
Confidence                 76666     5531      22   9999999999  789999999999999997 678888888   9   999


Q ss_pred             eeEEEecCCCCCeEEEeeCC---CeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-------------ccceEE
Q 018697          255 TWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------------YEDSVY  318 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~  318 (351)
                      |.+++|+|++ .+|++++.|   +.|++||++.                   ++++..+..             |...|.
T Consensus       236 i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  295 (397)
T 1sq9_A          236 IRSVKFSPQG-SLLAIAHDSNSFGCITLYETEF-------------------GERIGSLSVPTHSSQASLGEFAHSSWVM  295 (397)
T ss_dssp             EEEEEECSST-TEEEEEEEETTEEEEEEEETTT-------------------CCEEEEECBC--------CCBSBSSCEE
T ss_pred             cceEEECCCC-CEEEEEecCCCCceEEEEECCC-------------------CcccceeccCcccccccccccccCCcEE
Confidence            9999999999 999999999   9999999998                   778888887             999999


Q ss_pred             EEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          319 GLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +++|+|+++ +|++++.||.|++||+...
T Consensus       296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          296 SLSFNDSGE-TLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred             EEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            999999998 8999999999999999754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9e-36  Score=262.27  Aligned_cols=290  Identities=15%  Similarity=0.187  Sum_probs=225.0

Q ss_pred             cCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018697           23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      .++++...++.|.    .++.|.+|++...   .....+.+|.+.|.+++|+|+++.|+++    +.|+.|++||+.   
T Consensus       104 ~~~~~~~~l~~~~----~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~d~~i~iwd~~---  169 (420)
T 3vl1_A          104 TAKLQMRRFILGT----TEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISS----SQDMQLKIWSVK---  169 (420)
T ss_dssp             EECSSSCEEEEEE----TTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT---
T ss_pred             EEecCCCEEEEEE----CCCCEEEEeCCCc---ceeeecccccCccEEEEECCCCCEEEEE----eCCCeEEEEeCC---
Confidence            4566777777764    5788999987642   2334556899999999999999988875    689999999998   


Q ss_pred             CCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-------------------
Q 018697          103 GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-------------------  163 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------------  163 (351)
                            ..+.+..+.+|...|.+++|+|++.. +++++.|+.|++||+.++.....+....                   
T Consensus       170 ------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  242 (420)
T 3vl1_A          170 ------DGSNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL  242 (420)
T ss_dssp             ------TCCCCEEEECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred             ------CCcCceEEcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence                  56777888999999999999999984 6677899999999998754333322111                   


Q ss_pred             ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      ...+...+.+++|+|+++++++++.||.|++||+++++....+...|   +.+++|+|+++.++++|+.||.|++||+++
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            00123466777889999999999999999999999988777776554   999999999986899999999999999998


Q ss_pred             CCcceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          241 LKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       241 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                      ...++..+.. |...|.++.+ +++ .+|++++.|+.|++||+.........          ........+..|...|.+
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~  390 (420)
T 3vl1_A          323 PECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERPA----------IEFETPTFLVSNDDAVSQ  390 (420)
T ss_dssp             TTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSCE----------ECTTSCEEECCSSCCCCE
T ss_pred             CcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCccc----------eeccCccEEccCCcceEE
Confidence            6566777776 6778888855 567 89999999999999999862111000          001222335577888999


Q ss_pred             EEeCCCCC---ceEEEeeeCCeEEEeecCc
Q 018697          320 LAWSSREP---WIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       320 ~~~~~~~~---~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++|+|+++   . +++++.+|.+.+|+++.
T Consensus       391 ~~~s~~~~~~g~-l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          391 FCYVSDDESNGE-VLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEECCSSSSCE-EEEEETTTEEEEEESCC
T ss_pred             EEEccCCCCcce-EEEEcCCceEEEEeccC
Confidence            99999987   4 55566689999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.8e-36  Score=261.31  Aligned_cols=269  Identities=16%  Similarity=0.202  Sum_probs=209.8

Q ss_pred             EeeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-------------ecccccee
Q 018697           59 EGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-------------DAHVGKIN  124 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-------------~~h~~~v~  124 (351)
                      ..+.+|.+.|.+++|+| +++.|+++    +.|+.|++|++..         ......+             .+|...|.
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~----~~dg~i~iw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSG----GSDGVIVLYDLEN---------SSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEE----ETTSCEEEEECCC---------CSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEE----cCCCeEEEEECCC---------CcccceEeccccccccccccccCCCcEE
Confidence            44567999999999999 88888875    6899999999983         2222222             25999999


Q ss_pred             EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC---CcEEEeecCCeEEEEEcccCC
Q 018697          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      +++|+|++..++++++.|+.|++||+.++.......      +...+.++.|+|.+   ..+++++.++.|++||+++++
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            999999555457777889999999998654332222      23478899998854   489999999999999999988


Q ss_pred             cCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe---------------eCCCCceeEEEecCCC
Q 018697          202 KTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---------------PGHTHWTWAVCCNPEY  264 (351)
Q Consensus       202 ~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~  264 (351)
                      ....+....  |.+++|+|++++++++++.||.|++||++....++..+               ..|...|.+++|+|++
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  257 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG  257 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence            887776222  99999999998779999999999999998755455554               5788999999999999


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCccc----------------------------ccCCcccccccceeeccccce
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESL----------------------------VESPNQRANSLLNSYSDYEDS  316 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~  316 (351)
                       .+|++++.|+.|++||+.............                            ...++...++++..+.+|...
T Consensus       258 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          258 -LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             -SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             -CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence             999999999999999998754321110000                            000111345677788889999


Q ss_pred             EEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          317 VYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       317 v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      |++++|+|+++ +|++++.||.|++|+++...
T Consensus       337 v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          337 VDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             EEEEEEETTTT-EEEEEETTSCEEEEEECC--
T ss_pred             EEEEEEcCCCC-EEEEECCCCeEEEEeCCCCC
Confidence            99999999998 89999999999999998643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-36  Score=267.15  Aligned_cols=276  Identities=11%  Similarity=0.137  Sum_probs=219.1

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (351)
                      .+.+++++..++.|..    ++.+++|++......   ..+..| ..+....|+|+++.|+++    +.|+.|++||+. 
T Consensus        61 ~~~~s~~g~~l~~~~~----d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~-  127 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARL----DGHDFLFNTIIRDGS---KMLKRA-DYTAVDTAKLQMRRFILG----TTEGDIKVLDSN-  127 (420)
T ss_dssp             TCEEEEEETTEEEEEE----TTEEEEEECCSEETT---TTSCSC-CEEEEEEECSSSCEEEEE----ETTSCEEEECTT-
T ss_pred             ceeeeecCCeEEEEEc----CCcEEEEEeccccee---eEEecC-CceEEEEEecCCCEEEEE----ECCCCEEEEeCC-
Confidence            4556677777877753    789999997653221   122233 445555789999888875    689999999988 


Q ss_pred             ccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC
Q 018697          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD  180 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  180 (351)
                              ..+....+..|...|.+++|+|++.. +++++.|+.|++||+.++.....+     .+|...|.+++|+|++
T Consensus       128 --------~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          128 --------FNLQREIDQAHVSEITKLKFFPSGEA-LISSSQDMQLKIWSVKDGSNPRTL-----IGHRATVTDIAIIDRG  193 (420)
T ss_dssp             --------SCEEEEETTSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCCCEEE-----ECCSSCEEEEEEETTT
T ss_pred             --------CcceeeecccccCccEEEEECCCCCE-EEEEeCCCeEEEEeCCCCcCceEE-----cCCCCcEEEEEEcCCC
Confidence                    56777777899999999999999983 677789999999999976544332     3567799999999999


Q ss_pred             CcEEEeecCCeEEEEEcccCCcCceeecc-------------------------e-eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          181 VNAVAATCESSVQFWDLRSMGKTNSIEHA-------------------------H-VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       181 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~-v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      +.|++++.|+.|++||+++++....+...                         . +.+++|+|+++ ++++|+.||.|+
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~  272 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVIT  272 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEE
Confidence            99999999999999999988877666521                         1 44566789998 899999999999


Q ss_pred             EEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc-ccceeecc
Q 018697          235 LWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN-SLLNSYSD  312 (351)
Q Consensus       235 i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  312 (351)
                      +||++... .+..+ ..|...|.+++|+|+++.+|++++.||.|++||++.                   + .++..+..
T Consensus       273 i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-------------------~~~~~~~~~~  332 (420)
T 3vl1_A          273 VHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-------------------PECPVGEFLI  332 (420)
T ss_dssp             EEETTTCC-EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-------------------TTSCSEEEEE
T ss_pred             EEECCCCc-eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-------------------CcCchhhhhc
Confidence            99999844 44444 468899999999999933999999999999999997                   4 34666666


Q ss_pred             -ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          313 -YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       313 -~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                       |...|.++.|. ++. +|++++.|+.|++|++..
T Consensus       333 ~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          333 NEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             STTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECC
T ss_pred             cCCCCceEEEeC-CCC-EEEEecCCccEEEEeccC
Confidence             67778888665 566 899999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-35  Score=282.67  Aligned_cols=285  Identities=16%  Similarity=0.249  Sum_probs=244.6

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      ....+..+.++|++..+++|.    .++.|.+|++....   ....+.+|.+.|.+++|+|+++.|+++    +.|+.|+
T Consensus        12 h~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~   80 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVG----SDDFRIR   80 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEE----ETTSEEE
T ss_pred             CCCceEEEEECCCCCEEEEEe----CCCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCCCEEEEE----eCCCeEE
Confidence            445677888999999999875    57899999986632   345677899999999999999998885    6899999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|++.         +.+.+..+..|...|.+++|+|+++. +++++.|+.|++||+.++......    ..+|...+.++
T Consensus        81 vw~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~----~~~~~~~v~~~  146 (814)
T 3mkq_A           81 VFNYN---------TGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQT----FEGHEHFVMCV  146 (814)
T ss_dssp             EEETT---------TCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEE----EECCSSCEEEE
T ss_pred             EEECC---------CCcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEE----EcCCCCcEEEE
Confidence            99998         67788889999999999999999984 667788999999999864322222    23566789999


Q ss_pred             EECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCC--CCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          175 AWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       175 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      +|+| ++..+++++.|+.|++||++++.....+...+   +.+++|+|  ++. ++++++.||.|++||++. .+++..+
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~  224 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT-KSCVATL  224 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTT-TEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCC-CcEEEEE
Confidence            9999 78899999999999999999888777776443   99999999  887 899999999999999987 6788889


Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCc
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  328 (351)
                      .+|...|.+++|+|++ .+|++++.||.|++||+..                   ++.+..+..|...+.+++|+|++..
T Consensus       225 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST-------------------YKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT-------------------CSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             cCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------------------CcEEEEeecCCCcEEEEEEccCCCc
Confidence            9999999999999999 8999999999999999998                   8888899999999999999999876


Q ss_pred             eEEEeeeCCeEEEeecCc
Q 018697          329 IFASLSYDGRVVVESVKP  346 (351)
Q Consensus       329 ~l~s~~~dg~v~vw~~~~  346 (351)
                      ++++++.|+.+.+|++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          285 NYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             GEEEEEETTEEEEEECSC
T ss_pred             eEEEEEeCCCEEEEEcCC
Confidence            656667788899998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-35  Score=251.67  Aligned_cols=252  Identities=15%  Similarity=0.244  Sum_probs=204.5

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+.+|.+.|++|+|+|++..++++   ++.|++|+|||+....    .....+...+.+|...|.+++|+|+++. ++
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S---~s~D~~i~vWd~~~~~----~~~~~~~~~l~~h~~~V~~~~~s~dg~~-l~  102 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILS---ASRDKTIIMWKLTRDE----TNYGIPQRALRGHSHFVSDVVISSDGQF-AL  102 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEE---EETTSCEEEEEECCSS----SCSEEEEEEECCCSSCEEEEEECTTSSE-EE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEE---EcCCCeEEEEECCCCC----cccceeeEEEeCCCCCEEEEEECCCCCE-EE
Confidence            35688999999999999986544443   3799999999987321    1134567788999999999999999984 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      +++.|+.|++|+..........     ..+...+....++++++.+++++.|+.+++||+...........+|   +..+
T Consensus       103 s~~~d~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~  177 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGTTTRRF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV  177 (340)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred             EEcccccceEEeecccceeeee-----cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence            7789999999999854322222     1234478888999999999999999999999988655443333344   8899


Q ss_pred             EcCCCCC-cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          215 DYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       215 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                      +|++++. .++++++.|+.|++||++. .+.+..+.+|..+|++++|+|++ .+|++++.|+.|++||++.         
T Consensus       178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~---------  246 (340)
T 4aow_A          178 RFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNE---------  246 (340)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTT---------
T ss_pred             EEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEecc---------
Confidence            9988754 3678899999999999997 67888899999999999999999 9999999999999999998         


Q ss_pred             ccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                .+++..+..+ ..|..+.|+|++.  +++++.|+.|++||++.
T Consensus       247 ----------~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          247 ----------GKHLYTLDGG-DIINALCFSPNRY--WLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             ----------TEEEEEEECS-SCEEEEEECSSSS--EEEEEETTEEEEEETTT
T ss_pred             ----------CceeeeecCC-ceEEeeecCCCCc--eeeccCCCEEEEEECCC
Confidence                      7777777655 5699999999875  66777899999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-35  Score=252.39  Aligned_cols=252  Identities=14%  Similarity=0.153  Sum_probs=214.8

Q ss_pred             CCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCC
Q 018697           53 GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG  132 (351)
Q Consensus        53 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  132 (351)
                      +.......+.+|.+.|.+++|+|+++.|+++    +.|+.|++||+.         ..+.+..+..|...|.+++|+|++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~----~~dg~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~   86 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSC----SKDSSASVWYSL---------NGERLGTLDGHTGTIWSIDVDCFT   86 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEE----ESSSCEEEEETT---------TCCEEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEE----eCCCEEEEEeCC---------CchhhhhhhhcCCcEEEEEEcCCC
Confidence            4456667788999999999999999988885    689999999998         668888999999999999999998


Q ss_pred             CCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccCCcCceee
Q 018697          133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKTNSIE  207 (351)
Q Consensus       133 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~  207 (351)
                      +. +++++.|+.|++||+.++.......      +...+.+++|+|+++.+++++.+     +.|++||++.......+.
T Consensus        87 ~~-l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           87 KY-CVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             SE-EEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             CE-EEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence            84 6677889999999998755433332      34489999999999999999988     999999998775432221


Q ss_pred             c----------c-----eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          208 H----------A-----HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       208 ~----------~-----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      .          .     .+.+++|+|+++ ++++++.||.|++||++....++..+..|...|.+++|+|++ .+|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  237 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSS  237 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEec
Confidence            0          1     289999999998 799999999999999997567788899999999999999999 9999999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC--------------e
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--------------R  338 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------------~  338 (351)
                      .|+.|++||++.                   ++.+..+. +...+..++|+|+++ ++++++.++              .
T Consensus       238 ~d~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          238 RDTNSFLVDVST-------------------LQVLKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             TTSEEEEEETTT-------------------CCEEEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CE
T ss_pred             CCceEEEEECCC-------------------Cceeeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcce
Confidence            999999999998                   77777776 667899999999999 788888887              8


Q ss_pred             EEEeecCcc
Q 018697          339 VVVESVKPF  347 (351)
Q Consensus       339 v~vw~~~~~  347 (351)
                      +++|++...
T Consensus       297 i~~~d~~~~  305 (369)
T 3zwl_B          297 ARFYHKIFE  305 (369)
T ss_dssp             EEEEETTTC
T ss_pred             eEEEecCCC
Confidence            999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-36  Score=265.52  Aligned_cols=275  Identities=16%  Similarity=0.254  Sum_probs=213.9

Q ss_pred             CCCCEEEEEEeCCCCCe-EEEEeeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           39 KEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      ..++.|.+|++...+.. .....+.+|.+.|.+++|+| ++..|+++    +.|+.|+||++.....  .....+++..+
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~----s~dg~v~vw~~~~~~~--~~~~~~~~~~~  127 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG----SEDCTVMVWEIPDGGL--VLPLREPVITL  127 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEE----ETTSEEEEEECCTTCC--SSCBCSCSEEE
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEE----eCCCeEEEEEccCCCC--ccccCCceEEe
Confidence            46789999998764321 12244678999999999999 77777664    7899999999983100  00011567788


Q ss_pred             eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       117 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      .+|...|.+++|+|++..++++++.|+.|++||+.++.....+.   ..+|...|.+++|+|+++.|++++.|+.|++||
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  204 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE  204 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence            89999999999999986557777899999999998654332221   134667999999999999999999999999999


Q ss_pred             cccCCcCceeecce----eEEEEcCCCCCcEEEEe---cCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeE
Q 018697          197 LRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTA---ADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       197 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l  268 (351)
                      +++++.+..+...|    +.+++|+|++. ++++|   +.|+.|++||++....++.... .|...+.+++|+|++ .+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l  282 (402)
T 2aq5_A          205 PRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIV  282 (402)
T ss_dssp             TTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEE
T ss_pred             CCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEE
Confidence            99988877773344    78999999997 78888   7999999999998555454444 577889999999999 666


Q ss_pred             E-EeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc-ceeecc--ccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          269 L-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL-LNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       269 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      + +++.|+.|++||+..                   ++. +..+..  |...|.+++|+|++. ++++  .++.+++|++
T Consensus       283 ~~~g~~dg~i~i~d~~~-------------------~~~~~~~l~~~~~~~~v~~~~~sp~~~-~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITS-------------------EAPFLHYLSMFSSKESQRGMGYMPKRG-LEVN--KCEIARFYKL  340 (402)
T ss_dssp             EEEETTCSCEEEEEECS-------------------STTCEEEEEEECCSSCCSEEEECCGGG-SCGG--GTEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEecC-------------------CCcceEeecccccCCcccceEEecccc-ccee--cceeEEEEEc
Confidence            5 666899999999997                   443 444443  458899999999988 5543  5679999998


Q ss_pred             Cc
Q 018697          345 KP  346 (351)
Q Consensus       345 ~~  346 (351)
                      .+
T Consensus       341 ~~  342 (402)
T 2aq5_A          341 HE  342 (402)
T ss_dssp             ET
T ss_pred             CC
Confidence            65

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-35  Score=276.65  Aligned_cols=251  Identities=17%  Similarity=0.256  Sum_probs=204.6

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|++++|+|++..++++   ++.|++|++|++....    .........+.+|...|.+++|+|+++. +++
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s---~s~D~~i~~W~~~~~~----~~~~~~~~~~~~h~~~v~~v~~s~~g~~-l~s  447 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVS---ASRDKSIILWKLTKDD----KAYGVAQRRLTGHSHFVEDVVLSSDGQF-ALS  447 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEE---EETTSEEEEEECCCST----TCSCEEEEEEECCSSCEEEEEECTTSSE-EEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEE---EeCCCcEEEEEccCCC----cccccccceecCCCCcEEEEEECCCCCE-EEE
Confidence            4578999999999999987655554   4899999999987311    1123456678899999999999999984 667


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--cce---eEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH---VRN  213 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~---v~~  213 (351)
                      ++.|++|++||+.++....     ...+|...|.+++|+|+++.|++++.|++|++||+..........  .+|   |.+
T Consensus       448 gs~Dg~v~vwd~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          448 GSWDGELRLWDLAAGVSTR-----RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             EETTSEEEEEETTTTEEEE-----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             EeCCCcEEEEECCCCccee-----EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence            7899999999998653322     234677899999999999999999999999999986543221111  234   999


Q ss_pred             EEcCCCCC-cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          214 VDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       214 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      ++|+|++. .++++++.|+.|++||++. .+....+.+|...|++++|+|++ .+|++++.|+.|++||++.        
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~--------  592 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE--------  592 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT--------
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC--------
Confidence            99999873 3799999999999999997 66788899999999999999999 9999999999999999998        


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                 ++.+..+..+ ..|.+++|+|++. ++++ +.|+.|++||+.+
T Consensus       593 -----------~~~~~~~~~~-~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~  632 (694)
T 3dm0_A          593 -----------GKKLYSLEAN-SVIHALCFSPNRY-WLCA-ATEHGIKIWDLES  632 (694)
T ss_dssp             -----------TEEEECCBCS-SCEEEEEECSSSS-EEEE-EETTEEEEEETTT
T ss_pred             -----------CceEEEecCC-CcEEEEEEcCCCc-EEEE-EcCCCEEEEECCC
Confidence                       7777777554 5699999999987 5555 4577899999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=253.25  Aligned_cols=252  Identities=12%  Similarity=0.176  Sum_probs=201.5

Q ss_pred             eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCC---cceEEEEEcccccCCCCCCcceeee-eeeccccceeEEEecC
Q 018697           55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE---SYGAAIWQIPELYGQLNSPQLERIA-ALDAHVGKINCVLWWS  130 (351)
Q Consensus        55 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~  130 (351)
                      .+......+|...|.+++|+|++..++++   ++.   |+.|++|++.         ..+... ....|...|.+++|+|
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~---~s~~~~d~~v~iw~~~---------~~~~~~~~~~~~~~~v~~~~~~~   75 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTM---GNFARGTGVIQLYEIQ---------HGDLKLLREIEKAKPIKCGTFGA   75 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE---EC--CCCEEEEEEEEC---------SSSEEEEEEEEESSCEEEEECTT
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEe---cCccCCCcEEEEEeCC---------CCcccceeeecccCcEEEEEEcC
Confidence            34445567899999999999999888876   354   9999999998         333322 2337899999999999


Q ss_pred             C---CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee------EECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          131 S---GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG------AWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       131 ~---~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      +   +. ++++++.|+.|++||+.++......    ..+|...|.++      +|+|+++.|++++.|+.|++||+++++
T Consensus        76 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           76 TSLQQR-YLATGDFGGNLHIWNLEAPEMPVYS----VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             CCTTTC-CEEEEETTSCEEEECTTSCSSCSEE----ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             CCCCCc-eEEEecCCCeEEEEeCCCCCccEEE----EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            9   45 4777788999999999976522222    23567789999      457899999999999999999999886


Q ss_pred             -cCceeec--c----eeEEEE----cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecC---CCCCe
Q 018697          202 -KTNSIEH--A----HVRNVD----YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP---EYDGF  267 (351)
Q Consensus       202 -~~~~~~~--~----~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  267 (351)
                       ....+..  +    .+.+++    |+|++. ++++++.|+.|++||++. .+. .....|...|.+++|+|   ++ .+
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~-~~  226 (357)
T 3i2n_A          151 DPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISM-NK  226 (357)
T ss_dssp             SCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSC-CE
T ss_pred             CcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCC-CE
Confidence             4555531  1    177777    889998 899999999999999997 444 44456889999999999   88 99


Q ss_pred             EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-----cccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-----DYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       268 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      |++++.|+.|++||++.                   .+.+..+.     .|...|++++|+|+++.+|++++.||.|++|
T Consensus       227 l~~~~~dg~i~i~d~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRT-------------------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEEEESTTEEEEEEEEE-------------------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             EEEECCCCeEEEEeCcC-------------------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            99999999999999987                   55555544     8999999999999987679999999999999


Q ss_pred             ecCc
Q 018697          343 SVKP  346 (351)
Q Consensus       343 ~~~~  346 (351)
                      +++.
T Consensus       288 d~~~  291 (357)
T 3i2n_A          288 KYEY  291 (357)
T ss_dssp             EEEC
T ss_pred             ecCC
Confidence            9874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=265.53  Aligned_cols=307  Identities=8%  Similarity=0.109  Sum_probs=214.6

Q ss_pred             ccceeEeeeecCCC-CcceEEEeeeeeCCCCEEEEEEeCC---CCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697           13 KYQARCISDVKADT-DHTSFLTGTLSLKEENEVHLLRLSS---GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      +.+...|..+.+++ +...++.|+    .++.|++|++..   .. ........+|...|.+++|+|++..|+++    +
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s----~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s  130 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGS----DQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPNFDAFAVS----S  130 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEE----TTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTTSSEEEEE----E
T ss_pred             cCCCCceEEEEECCCCCCEEEEec----CCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCCCCEEEEE----e
Confidence            33456677888888 777888775    689999999875   22 11112223699999999999999888885    6


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeec------------cccceeEEE--ecCCCCCcEEEEecCCcEEEEEcCCCC
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDA------------HVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCSN  154 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~~~--~~~~~~~~~~~~~~d~~v~iwd~~~~~  154 (351)
                      .|+.|++||+....      ..+....+..            +...+.++.  +++++. ++++++.|+.|++||+.++.
T Consensus       131 ~dg~i~vwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          131 KDGQIIVLKVNHYQ------QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             TTSEEEEEEEEEEE------ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCC
T ss_pred             CCCEEEEEEecccc------CCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCe
Confidence            99999999985210      1222222221            445566666  456676 36777889999999998754


Q ss_pred             CCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEc----CCCCCcEEEEe
Q 018697          155 KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY----DTKKKHLLVTA  227 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~----~~~~~~~l~~~  227 (351)
                      ....+...   .|...|.+++|+|++++|++++.||.|++||+++++.+..+...+   |.+++|    +|++. ++++|
T Consensus       204 ~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~  279 (437)
T 3gre_A          204 RLQIIENS---PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGG  279 (437)
T ss_dssp             EEEEEECC---GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEE
T ss_pred             eeEEEccC---CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEE
Confidence            43333221   256699999999999999999999999999999988877775333   999944    55676 89999


Q ss_pred             cCCCeEEEEecccCCcceeEeeC--------------------------CCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          228 ADESGIHLWDLRMLKAPIQELPG--------------------------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                      +.|+.|++||+++ .+.+..+.+                          |...|++++|+ ++ .+|++++.|+.|++||
T Consensus       280 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          280 SSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFS  356 (437)
T ss_dssp             STTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEE
T ss_pred             cCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEE
Confidence            9999999999987 555555553                          45568888888 66 8999999999999999


Q ss_pred             cCCCCCCCCCCccc----ccC--------------CcccccccceeeccccceEEEEEeCCC--CCceEEEeeeCCeEEE
Q 018697          282 VSTSNHDELPSESL----VES--------------PNQRANSLLNSYSDYEDSVYGLAWSSR--EPWIFASLSYDGRVVV  341 (351)
Q Consensus       282 ~~~~~~~~~~~~~~----~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~v~v  341 (351)
                      +.............    ...              ..............|...|++++|+++  +. +|++++.||.|+|
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-~l~s~~~dG~I~i  435 (437)
T 3gre_A          357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP-LLVACDNSGLIGI  435 (437)
T ss_dssp             TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE-EEEEEETTSCEEE
T ss_pred             CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce-EEEEEcCCceEEE
Confidence            98732211100000    000              000001112223348899999999998  55 8999999999999


Q ss_pred             ee
Q 018697          342 ES  343 (351)
Q Consensus       342 w~  343 (351)
                      |+
T Consensus       436 w~  437 (437)
T 3gre_A          436 FQ  437 (437)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.9e-35  Score=249.13  Aligned_cols=277  Identities=12%  Similarity=0.094  Sum_probs=228.0

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCC-ceEEEEeecCCcceE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGA   93 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~~~~~d~~i   93 (351)
                      +...+..+.++++...++.|.    .++.|.+|++.............+|...|.+++|+|+++ .|+++    +.|+.|
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~i   81 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG----TVQGEI   81 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE----ETTSCE
T ss_pred             CCCcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE----cCCCeE
Confidence            345577777888888888774    579999999998775555666779999999999999998 77775    689999


Q ss_pred             EEEEc-ccccCCCCCCcceeeeeeec--cccceeEEEecCCCCCcEEEEecCCcEEEEEcCC---------CCCCccccc
Q 018697           94 AIWQI-PELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC---------SNKNAQVQS  161 (351)
Q Consensus        94 ~vw~~-~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~---------~~~~~~~~~  161 (351)
                      ++|++ .         .. ....+..  |...|.+++|+| +. .+++++.|+.|++||+.+         ......+  
T Consensus        82 ~~wd~~~---------~~-~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--  147 (342)
T 1yfq_A           82 LKVDLIG---------SP-SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--  147 (342)
T ss_dssp             EEECSSS---------SS-SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--
T ss_pred             EEEEecc---------CC-ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE--
Confidence            99999 6         22 3366778  999999999999 66 477778999999999985         3322221  


Q ss_pred             ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc-CCcCc-eeecce---eEEEEcCC-CCCcEEEEecCCCeEEE
Q 018697          162 KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKTN-SIEHAH---VRNVDYDT-KKKHLLVTAADESGIHL  235 (351)
Q Consensus       162 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~-~~~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~i  235 (351)
                          .|...+.+++|+|++  +++++.++.|++||+++ +.... .....+   +.+++|+| ++. ++++++.||.|++
T Consensus       148 ----~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i  220 (342)
T 1yfq_A          148 ----KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAV  220 (342)
T ss_dssp             ----SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEE
T ss_pred             ----eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEE
Confidence                145589999999877  99999999999999998 55432 222233   99999999 998 8999999999999


Q ss_pred             EecccC-----CcceeEeeCCCC---------ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          236 WDLRML-----KAPIQELPGHTH---------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       236 ~d~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      |+++..     .+....+..|..         .|.+++|+|++ .+|++++.||.|++||+..                 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~-----------------  282 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT-----------------  282 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT-----------------
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCcc-----------------
Confidence            999874     267888888865         99999999999 9999999999999999998                 


Q ss_pred             cccccceeeccc-cceEEEEEeCCCCCceEEEeeeCCe-EEEee
Q 018697          302 RANSLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGR-VVVES  343 (351)
Q Consensus       302 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~-v~vw~  343 (351)
                        ++++..+..| ...|.+++  |++. +|++++.||. .+.|.
T Consensus       283 --~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          283 --RKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             --TEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred             --HhHhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence              8888899998 99999999  9988 8999999998 55444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=256.84  Aligned_cols=314  Identities=17%  Similarity=0.304  Sum_probs=220.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC--------eEEEEeeecCC------------cceeeeeeCC
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--------ELICEGLFSHP------------NEIWDLSSCP   75 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~h~------------~~v~~i~~~~   75 (351)
                      ...|..+.+++++..++.|.    .++.|++|++.....        ......+.+|.            ..|.+++|+|
T Consensus        28 ~~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cCcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            45788888999999998875    589999999986531        12346677898            8899999999


Q ss_pred             CC--CceEEEEeecCCcceEEEEEcccccCC---------------------CCCCc---------ceeeee-eeccccc
Q 018697           76 FD--QRIFSTVFSTGESYGAAIWQIPELYGQ---------------------LNSPQ---------LERIAA-LDAHVGK  122 (351)
Q Consensus        76 ~~--~~l~~~~~~~~~d~~i~vw~~~~~~~~---------------------~~~~~---------~~~~~~-~~~h~~~  122 (351)
                      ++  ..|+++    +.|+.|++|++......                     ...+.         ..+... ..+|...
T Consensus       104 ~~~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          104 QKNAAQFLLS----TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CCSSSEEEEE----ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCCcceEEEe----CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            98  567765    68999999998731000                     00000         001112 3679999


Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc---cccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcc
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ---SKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLR  198 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~  198 (351)
                      |.+++|+|+++. ++++ .|+.|++||+..........   .....+|...|.+++|+|++ ..|++++.|+.|++||++
T Consensus       180 v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            999999999983 4444 79999999998433222211   11234677799999999998 899999999999999999


Q ss_pred             cCCc----Cceeecc--------------eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc------
Q 018697          199 SMGK----TNSIEHA--------------HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW------  254 (351)
Q Consensus       199 ~~~~----~~~~~~~--------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------  254 (351)
                      +++.    ...+...              .|.+++|+|+++ +|++++. +.|++||++...+++..+..|...      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence            8875    4444421              389999999998 7888888 999999998756788888888642      


Q ss_pred             ---------eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC-----cc-cccCCc-------ccccccceeecc
Q 018697          255 ---------TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS-----ES-LVESPN-------QRANSLLNSYSD  312 (351)
Q Consensus       255 ---------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~~-------~~~~~~~~~~~~  312 (351)
                               +..++|+|++ .+|++++.||.|++||+..........     .. ....+.       ............
T Consensus       336 ~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD  414 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred             cccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence                     2349999999 999999999999999998742210000     00 000000       000000000113


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +...|..++|+|++. +||+++.++ +++|.-
T Consensus       415 ~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          415 FNKKILHTAWHPKEN-IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TTSCCCEEEECSSSS-EEEEECSSC-EEEEEC
T ss_pred             cCCceeEEEECCCCC-EEEEEecce-eeeecc
Confidence            456789999999998 788887665 778864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.7e-35  Score=254.14  Aligned_cols=248  Identities=11%  Similarity=0.097  Sum_probs=194.1

Q ss_pred             EEEeeecCCcceeeeeeCCCC-CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee--eccccceeEEEecCCCC
Q 018697           57 ICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL--DAHVGKINCVLWWSSGR  133 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~  133 (351)
                      ....+.+|...|.+++|+|++ +.|+++    +.|+.|+|||+.         ..+....+  .+|...|.+++|+|++.
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVG----SKGGDIILWDYD---------VQNKTSFIQGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEE----EBTSCEEEEETT---------STTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEE----cCCCeEEEEeCC---------CcccceeeecCCcCCceeEEEeCCCCC
Confidence            346678999999999999998 666664    789999999998         33333344  47999999999999543


Q ss_pred             CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---
Q 018697          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (351)
Q Consensus       134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---  210 (351)
                      ..+++++.|+.|++||+.. .... ... ....+...+.+++|+|+++.|++++.|+.|++||++ ++.+..+. .|   
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~h~~~  206 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-SVIQ-VFA-KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK-LHKAK  206 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-CEEE-EEE-CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE-CSSSC
T ss_pred             CEEEEEeCCCEEEEEECCC-CceE-EEe-ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec-cCCCc
Confidence            3477778999999999984 2222 111 222345689999999999999999999999999994 55666665 33   


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccC---CcceeEeeCCCCceeEEEecC-CCCCeEEEeeCCCeEEEEEcCCCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRML---KAPIQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSN  286 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~  286 (351)
                      |.+++|+|++++++++++.|+.|++||++..   ..++..+ .|...|.+++|+| ++ .+|++++.|+.|++||++.  
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~--  282 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYD--  282 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTB--
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCC--
Confidence            9999999999878999999999999999863   2244444 6999999999999 88 9999999999999999987  


Q ss_pred             CCCCCCcccccCCcccccccceeeccc-----------------cceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          287 HDELPSESLVESPNQRANSLLNSYSDY-----------------EDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                       +..+..+..|                 ...+..++|+|++. +  +++.|+.|++||+.+
T Consensus       283 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          283 -----------------WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             -----------------TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTT
T ss_pred             -----------------CccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCC
Confidence                             3333333322                 13455577788877 4  788999999999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=262.06  Aligned_cols=257  Identities=13%  Similarity=0.201  Sum_probs=197.8

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC--CCCCCcceeeeeeeccc------------cceeEEEe
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG--QLNSPQLERIAALDAHV------------GKINCVLW  128 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~~h~------------~~v~~~~~  128 (351)
                      .|.+.|.+++|+|+++.|+++    +.|+.|+||++.....  .......+....+.+|.            ..|.+++|
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATG----DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEE----ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEE----cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            467999999999999988885    6899999999983211  00112234677888998            88999999


Q ss_pred             cCCCC-CcEEEEecCCcEEEEEcCCCCCCcc-------------------c----------------ccccccCccccee
Q 018697          129 WSSGR-HDKLVSIDEENIFLWSLDCSNKNAQ-------------------V----------------QSKQSSGMLHYLS  172 (351)
Q Consensus       129 ~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~-------------------~----------------~~~~~~~~~~~v~  172 (351)
                      +|++. ..+++++.|+.|++||+.+......                   +                ......+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            99983 2477778999999999875221100                   0                0011246788999


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccC-CcCcee------ecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSI------EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~------~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      +++|+|+++.|+++ .|+.|++||+++. +....+      ...|   |.+++|+|++..+|++|+.||.|++||++. .
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~  259 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-S  259 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-C
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-C
Confidence            99999999999998 7999999999843 333321      1133   999999999833899999999999999997 4


Q ss_pred             cc----eeEeeCCCC------------ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018697          243 AP----IQELPGHTH------------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       243 ~~----~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      +.    +..+..|..            .|.+++|+|++ .+|++++. +.|++||++.                  .+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~------------------~~~~  319 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNM------------------ENRP  319 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTC------------------CSSC
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCC------------------Cccc
Confidence            44    678888876            89999999999 99999998 9999999985                  1556


Q ss_pred             ceeeccccce---------------EEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          307 LNSYSDYEDS---------------VYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       307 ~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +..+..|...               +..++|+|+++ +|++++.||.|++||+.+
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTT
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCC
Confidence            6677666532               23499999999 889999999999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=277.31  Aligned_cols=256  Identities=18%  Similarity=0.287  Sum_probs=205.8

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDK  136 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~  136 (351)
                      ..+.+|.+.|++++|+|+++.|+++    +.|+.|+||++.       ....+.+..+.+|.++|.+++|+|+  +. .+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg----~~dg~I~vwd~~-------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l   70 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATC----SSDKTIKIFEVE-------GETHKLIDTLTGHEGPVWRVDWAHPKFGT-IL   70 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEE----ETTTEEEEEEEE-------TTEEEEEEEECCCSSCEEEEEECCTTSCS-EE
T ss_pred             eecccCcceeEEEEECCCCCeEEEE----ECCCcEEEEecC-------CCCCccceeccCCcCceEEEEecCCCCCC-EE
Confidence            3457899999999999999988885    689999999987       2356778889999999999999988  66 47


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC--CCcEEEeecCCeEEEEEcccCCcCceee-cce---
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIE-HAH---  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~---  210 (351)
                      ++++.||.|++||+.++...   ......+|...|.+++|+|+  ++.+++++.||.|++||++++....... ..|   
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~---~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWS---QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEE---EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EEEeCCCeEEEEECCCCccc---ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            77789999999999864311   11223456779999999999  8999999999999999999874433222 233   


Q ss_pred             eEEEEcCCC-------------CCcEEEEecCCCeEEEEecccCC---cceeEeeCCCCceeEEEecCC---CCCeEEEe
Q 018697          211 VRNVDYDTK-------------KKHLLVTAADESGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPE---YDGFILSA  271 (351)
Q Consensus       211 v~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~  271 (351)
                      +.+++|+|.             +. ++++|+.||.|++||++...   .+...+.+|..+|++++|+|+   + .+|+++
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~  225 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASV  225 (753)
T ss_dssp             EEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEE
T ss_pred             eEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEE
Confidence            999999994             66 79999999999999998743   355677899999999999999   7 999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.||.|++||++......              ...+.....|...|++++|+|+++ ++++++.||.|++|++..
T Consensus       226 s~Dg~I~iwd~~~~~~~~--------------~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPW--------------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSCEEEEEESSSSSCC--------------BCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred             ecCCEEEEecCCCCCCcc--------------eeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence            999999999998721100              113344456888999999999998 899999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.6e-35  Score=277.52  Aligned_cols=247  Identities=15%  Similarity=0.241  Sum_probs=213.5

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...+.+|.+.|.+++|+|+++.|+++    +.|+.|+|||+.         +++.+..+..|..+|.+++|+|+++. ++
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~----~~~g~v~iwd~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~   71 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTT----LYSGRVEIWNYE---------TQVEVRSIQVTETPVRAGKFIARKNW-II   71 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEE----ETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEEEGGGTE-EE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEE----eCCCEEEEEECC---------CCceEEEEecCCCcEEEEEEeCCCCE-EE
Confidence            35677899999999999999998886    689999999998         67888899999999999999999984 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce---eEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRN  213 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~---v~~  213 (351)
                      +++.|+.|++||+.++......     .+|...|.+++|+|+++.|++++.|+.|++||++++. ....+. .|   +.+
T Consensus        72 ~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~  145 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMC  145 (814)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEE-----ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEE
Confidence            6788999999999876443322     3466799999999999999999999999999999874 333443 44   999


Q ss_pred             EEcCC-CCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecC--CCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018697          214 VDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       214 ~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~  289 (351)
                      ++|+| ++. ++++++.||.|++||++. ..+...+..+. ..+..++|+|  ++ .+|++++.|+.|++||++.     
T Consensus       146 ~~~~p~~~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-----  217 (814)
T 3mkq_A          146 VAFNPKDPS-TFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT-----  217 (814)
T ss_dssp             EEEETTEEE-EEEEEETTSEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTT-----
T ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCC-----
Confidence            99999 665 899999999999999987 44556665544 8999999999  88 8999999999999999998     


Q ss_pred             CCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                    ++.+..+.+|...|.+++|+|+++ ++++++.||.|++||+.+.
T Consensus       218 --------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          218 --------------KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             --------------TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC
T ss_pred             --------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Confidence                          788888999999999999999999 8999999999999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-34  Score=248.36  Aligned_cols=251  Identities=13%  Similarity=0.084  Sum_probs=202.5

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCC-CcEEEE
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVS  139 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~  139 (351)
                      ..+|.+.|.+++|+|+++.|+++    +.|+.|++|++...      ........+..|...|.+++|+|++. . ++++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~----~~d~~v~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~   75 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQ------AKNVDLLQSLRYKHPLLCCNFIDNTDLQ-IYVG   75 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETT------TTEEEEEEEEECSSCEEEEEEEESSSEE-EEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEE----cCCCeEEEEEeCCC------CccccceeeeecCCceEEEEECCCCCcE-EEEE
Confidence            34799999999999999888885    68999999999831      01123455568999999999999987 5 7777


Q ss_pred             ecCCcEEEEEc-CCCCCCcccccccccC--cccceeeeEECCCCCcEEEeecCCeEEEEEccc---------CCcCceee
Q 018697          140 IDEENIFLWSL-DCSNKNAQVQSKQSSG--MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---------MGKTNSIE  207 (351)
Q Consensus       140 ~~d~~v~iwd~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~  207 (351)
                      +.|+.|++||+ .++..      ....+  |...|.+++|+| ++.+++++.|+.|++||+++         ++++..+.
T Consensus        76 ~~dg~i~~wd~~~~~~~------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             ETTSCEEEECSSSSSSE------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             cCCCeEEEEEeccCCce------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence            88999999999 75422      12234  677999999999 99999999999999999998         77777766


Q ss_pred             cce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc-CCcce-eEeeCCCCceeEEEecC-CCCCeEEEeeCCCeEEEEEcC
Q 018697          208 HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM-LKAPI-QELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       208 ~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      ... +.+++|+|++   +++++.|+.|++||++. ..... .....|...+.+++|+| ++ .++++++.||.|++|+++
T Consensus       149 ~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECC
T ss_pred             eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEc
Confidence            444 9999999876   88899999999999986 44333 34446888999999999 99 999999999999999998


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccc---------eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ......             ..+....+..|..         .|.+++|+|+++ +|++++.||.|++||+.+.
T Consensus       225 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          225 DQGDDY-------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TTCCST-------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTT
T ss_pred             CCCccc-------------ccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccH
Confidence            720000             0256666766654         899999999998 8999999999999999753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.5e-34  Score=253.40  Aligned_cols=277  Identities=15%  Similarity=0.276  Sum_probs=219.2

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +..+.+  +...++.|+    .++.|++|++....   ....+.+|.+.|.+++|  +++.|+++    +.|+.|++||+
T Consensus       136 v~~~~~--d~~~l~~g~----~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg----~~dg~i~vwd~  200 (435)
T 1p22_A          136 VYCLQY--DDQKIVSGL----RDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITG----SSDSTVRVWDV  200 (435)
T ss_dssp             EEEEEC--CSSEEEEEE----SSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEE----ETTSCEEEEES
T ss_pred             EEEEEE--CCCEEEEEe----CCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEE----cCCCeEEEEEC
Confidence            444444  556677664    57899999986543   34567789999999999  56677664    79999999999


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (351)
                      .         +.+.+..+..|...|.+++|+++   .+++++.|+.|++||+.++.....  .....+|...|.+++|  
T Consensus       201 ~---------~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          201 N---------TGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITL--RRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             S---------SCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEE--EEEECCCSSCEEEEEE--
T ss_pred             C---------CCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCcee--eeEecCCCCcEEEEEe--
Confidence            8         66788899999999999999753   477779999999999986543321  1223467779999999  


Q ss_pred             CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce
Q 018697          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT  255 (351)
Q Consensus       179 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  255 (351)
                      +++.+++++.|+.|++||+++++.+..+. .|   +.+++++  +. ++++|+.||.|++||+++ ++++..+.+|...|
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v  339 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELV  339 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcE
Confidence            67899999999999999999998888777 44   8899984  44 899999999999999998 67889999999999


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      .+++|  ++ .+|++|+.||.|++||++........          ....++..+.+|...|.+++|  ++. +|++++.
T Consensus       340 ~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~  403 (435)
T 1p22_A          340 RCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAP----------AGTLCLRTLVEHSGRVFRLQF--DEF-QIVSSSH  403 (435)
T ss_dssp             EEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSC----------TTTTEEEEECCCSSCCCCEEE--CSS-CEEECCS
T ss_pred             EEEEe--cC-CEEEEEeCCCcEEEEECCCCCCcccc----------ccchheeeccCCCCCeEEEEe--CCC-EEEEEeC
Confidence            99999  55 89999999999999999762110000          001267788899999999999  566 7999999


Q ss_pred             CCeEEEeecCcc
Q 018697          336 DGRVVVESVKPF  347 (351)
Q Consensus       336 dg~v~vw~~~~~  347 (351)
                      ||.|++||+...
T Consensus       404 Dg~i~iwd~~~~  415 (435)
T 1p22_A          404 DDTILIWDFLND  415 (435)
T ss_dssp             SSEEEEEC----
T ss_pred             CCEEEEEECCCC
Confidence            999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.6e-34  Score=239.68  Aligned_cols=250  Identities=16%  Similarity=0.299  Sum_probs=195.8

Q ss_pred             ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCc
Q 018697           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGES   90 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d   90 (351)
                      ..+...|..+.+++++.+++.|.    .++.|++|++....... ...+.+|.+.|.+++|+|+  ++.|+++    +.|
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~~-~~~l~gH~~~V~~v~~s~~~~g~~l~s~----s~D   76 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASC----SYD   76 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBCC-CEEECCCSSCEEEEEECCGGGCSEEEEE----ETT
T ss_pred             cCCcCceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcEE-EEEEccccCCeEEEEecCCCcCCEEEEE----cCC
Confidence            33455677888899999998875    68999999997543322 3567899999999999864  6666664    799


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ++|+|||+..       .....+..+..|...|.+++|+|+  +. ++++++.|+.|++||+.+......   ....+|.
T Consensus        77 ~~v~iWd~~~-------~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~  145 (297)
T 2pm7_B           77 GKVMIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP---IIIDAHA  145 (297)
T ss_dssp             TEEEEEEBSS-------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC---EEEECCS
T ss_pred             CEEEEEEcCC-------CceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee---eeeeccc
Confidence            9999999972       123456677889999999999997  55 466778999999999986432211   1234677


Q ss_pred             cceeeeEECCC-------------CCcEEEeecCCeEEEEEcccCCc----Cceeecce---eEEEEcCCCC--CcEEEE
Q 018697          169 HYLSGGAWDPH-------------DVNAVAATCESSVQFWDLRSMGK----TNSIEHAH---VRNVDYDTKK--KHLLVT  226 (351)
Q Consensus       169 ~~v~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~---v~~~~~~~~~--~~~l~~  226 (351)
                      ..|.+++|+|+             ++.|++++.|+.|++||+++++.    ...+. +|   |.+++|+|++  ..+|++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEE
Confidence            79999999997             46899999999999999987662    33343 45   9999999995  348999


Q ss_pred             ecCCCeEEEEecccCCcc--eeEe--eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          227 AADESGIHLWDLRMLKAP--IQEL--PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++.|++|++||++.....  ...+  ..|...|.+++|+|++ .+|++++.|+.|++|+...
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence            999999999999863221  1233  4678899999999999 9999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-34  Score=241.27  Aligned_cols=248  Identities=15%  Similarity=0.166  Sum_probs=206.5

Q ss_pred             CCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC
Q 018697           52 GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS  131 (351)
Q Consensus        52 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  131 (351)
                      .........+.+|.+.|.+++| |+++.|+++    +.|+.|++||+.         ..+....+..|...|.+++|+|+
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~----~~dg~v~vw~~~---------~~~~~~~~~~~~~~v~~~~~~~~   70 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASV----SRDGTVRLWSKD---------DQWLGTVVYTGQGFLNSVCYDSE   70 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-EETTEEEEE----ETTSEEEEEEES---------SSEEEEEEEECSSCEEEEEEETT
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEE----EcCCcEEEEECC---------CCEEEEEeecCCccEEEEEECCC
Confidence            3344456778899999999999 989888875    699999999998         56777888899999999999999


Q ss_pred             CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018697          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       132 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      +.. +++++.|+.|++|++.........  ....+|...+.+++|  +++.+++++.|+.|++||  .++....+.... 
T Consensus        71 ~~~-l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~  143 (313)
T 3odt_A           71 KEL-LLFGGKDTMINGVPLFATSGEDPL--YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA  143 (313)
T ss_dssp             TTE-EEEEETTSCEEEEETTCCTTSCC---CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred             CCE-EEEecCCCeEEEEEeeecCCCCcc--cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence            984 677788999999999864332222  223467779999999  567899999999999999  444444554222 


Q ss_pred             -eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          211 -VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       211 -v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                       +.+++|+| ++. ++++++.|+.|++||.   .+....+.. |...+.+++|+|++ . +++++.|+.|++||++.   
T Consensus       144 ~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~---  214 (313)
T 3odt_A          144 SVWDAKVVSFSEN-KFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHT---  214 (313)
T ss_dssp             CEEEEEEEETTTT-EEEEEETTSCEEEEET---TEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTT---
T ss_pred             ceeEEEEccCCCC-EEEEEECCCCEEEEec---CceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCc---
Confidence             99999988 666 8999999999999994   446677776 89999999999998 5 99999999999999998   


Q ss_pred             CCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                      ++++..+..|...|++++|+|++.  +++++.||.|++||+.+.
T Consensus       215 ----------------~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          215 ----------------GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             ----------------CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTC
T ss_pred             ----------------hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCC
Confidence                            888999999999999999999984  889999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=261.17  Aligned_cols=283  Identities=14%  Similarity=0.146  Sum_probs=202.0

Q ss_pred             CCCCCeEEEEeeecCCcceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEe
Q 018697           50 SSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW  128 (351)
Q Consensus        50 ~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  128 (351)
                      |...+.+......+|.+.|++++|+| +++.|+++    +.|++|+|||+.......   ..+....+ .|...|.+++|
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~----s~dg~v~vwd~~~~~~~~---~~~~~~~~-~h~~~v~~~~~  119 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITG----SDQGVIKIWNLKEIIVGE---VYSSSLTY-DCSSTVTQITM  119 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEE----ETTSEEEEEEHHHHHTTC---CCSCSEEE-ECSSCEEEEEE
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEe----cCCceEEEeECcccccCc---ccceeeec-cCCCCEEEEEE
Confidence            34444444333378999999999999 88888875    799999999987311100   02223333 59999999999


Q ss_pred             cCCCCCcEEEEecCCcEEEEEcC---CCCCCccccccc--------ccCcccceeeeE--ECCCCCcEEEeecCCeEEEE
Q 018697          129 WSSGRHDKLVSIDEENIFLWSLD---CSNKNAQVQSKQ--------SSGMLHYLSGGA--WDPHDVNAVAATCESSVQFW  195 (351)
Q Consensus       129 ~~~~~~~~~~~~~d~~v~iwd~~---~~~~~~~~~~~~--------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iw  195 (351)
                      +|++.. +++++.|+.|++||+.   .+... ......        ..++...+.++.  +++++..+++++.|+.|++|
T Consensus       120 ~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          120 IPNFDA-FAVSSKDGQIIVLKVNHYQQESEV-KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             CTTSSE-EEEEETTSEEEEEEEEEEEETTEE-EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             eCCCCE-EEEEeCCCEEEEEEeccccCCcee-eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            998884 6777899999999995   22211 111100        000333566666  66889999999999999999


Q ss_pred             EcccCCcCceeecc-e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEec----CCCCC
Q 018697          196 DLRSMGKTNSIEHA-H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCN----PEYDG  266 (351)
Q Consensus       196 d~~~~~~~~~~~~~-~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~----~~~~~  266 (351)
                      |+++++.+..+... |   |.+++|+|++. +|++|+.||.|++||++. .+++..+. .|..+|.+++|+    |++ .
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~  274 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNS-V  274 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTE-E
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCc-c
Confidence            99999988888742 3   99999999998 899999999999999997 77788776 788899999555    556 7


Q ss_pred             eEEEeeCCCeEEEEEcCCCCCCCCCC------cccccCCcccccccceeecc--ccceEEEEEeCCCCCceEEEeeeCCe
Q 018697          267 FILSAGTDSTVNLWLVSTSNHDELPS------ESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGR  338 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~  338 (351)
                      +|++++.|+.|++||++.........      ......+... ...-..+.+  |...|++++|+ +++ +|++++.|+.
T Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~  351 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK-GLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSS  351 (437)
T ss_dssp             EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS-SGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTE
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc-ccccceecccccCCceEEEEEC-Cce-EEEecCCCCe
Confidence            99999999999999998732111000      0000000000 000012233  77889999999 666 8999999999


Q ss_pred             EEEeecCccc
Q 018697          339 VVVESVKPFL  348 (351)
Q Consensus       339 v~vw~~~~~~  348 (351)
                      |++||+.+..
T Consensus       352 i~~wd~~~~~  361 (437)
T 3gre_A          352 IVMFSLNELS  361 (437)
T ss_dssp             EEEEETTCGG
T ss_pred             EEEEECCCcc
Confidence            9999997643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=253.26  Aligned_cols=247  Identities=17%  Similarity=0.265  Sum_probs=201.3

Q ss_pred             EEEeeecCCcceeeeeeCCCCC-ceEEEEeecCCcceEEEEEc----ccccCCCCCCcce------eeeeeec-------
Q 018697           57 ICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQI----PELYGQLNSPQLE------RIAALDA-------  118 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~----~~~~~~~~~~~~~------~~~~~~~-------  118 (351)
                      .......|.+.|.+++|+|+++ .|+++    +.|+.|++|++    .         ..+      ....+..       
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~----~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  103 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPLDESILAYG----EKNSVARLARIVETDQ---------EGKKYWKLTIIAELRHPFALSAS  103 (425)
T ss_dssp             EECEEEEECSCCSEEEECSSCTTEEEEE----ETBTEEEEEEEEEC---------------CEEEEEEEEEECCCCCC--
T ss_pred             hheeeeeccCceEEEEECCCCCcEEEEe----cCCceEEEEEEecccC---------Ccccccccccccccccccccccc
Confidence            3344456779999999999999 66664    68999999999    5         223      3333333       


Q ss_pred             ---cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEE
Q 018697          119 ---HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (351)
Q Consensus       119 ---h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  195 (351)
                         |...|.+++|+|++.. +++++.|+.|++||.. +... .    ....|...|.+++|+|++++|++++.|+.|++|
T Consensus       104 ~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~~~~-~~~~-~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A          104 SGKTTNQVTCLAWSHDGNS-IVTGVENGELRLWNKT-GALL-N----VLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             ----CBCEEEEEECTTSSE-EEEEETTSCEEEEETT-SCEE-E----EECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ccCCCCceEEEEEcCCCCE-EEEEeCCCeEEEEeCC-CCee-e----eccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence               6889999999999984 6677889999999943 2222 1    223567799999999999999999999999999


Q ss_pred             EcccCCcCceee-------------------------------------------------------cce---eEEEEcC
Q 018697          196 DLRSMGKTNSIE-------------------------------------------------------HAH---VRNVDYD  217 (351)
Q Consensus       196 d~~~~~~~~~~~-------------------------------------------------------~~~---v~~~~~~  217 (351)
                      |+++++....+.                                                       ..|   +.+++|+
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            997654322110                                                       122   8999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      |+++ +|++++.|+.|++||++. .+++..+..|...|.+++|+|++  ++++++.|+.|++||++.             
T Consensus       257 ~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~-------------  319 (425)
T 1r5m_A          257 DTNK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ-------------  319 (425)
T ss_dssp             TTTT-EEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT-------------
T ss_pred             CCCC-EEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC-------------
Confidence            9998 899999999999999997 66788888999999999999987  899999999999999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                            ++.+..+..|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus       320 ------~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          320 ------NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             ------TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHH
T ss_pred             ------CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Confidence                  888888989999999999999998 8999999999999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.3e-34  Score=253.82  Aligned_cols=266  Identities=16%  Similarity=0.262  Sum_probs=216.2

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (351)
                      ..++.|    ..++.|++|++....   ....+.+|.+.|.+++|+|++ .++++    +.|++|++||+.         
T Consensus       133 ~~l~sg----s~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s~----s~dg~i~vwd~~---------  191 (464)
T 3v7d_B          133 NYVITG----ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVSG----STDRTVRVWDIK---------  191 (464)
T ss_dssp             TEEEEE----ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEEE----ETTSCEEEEETT---------
T ss_pred             CEEEEE----cCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEEE----eCCCCEEEEECC---------
Confidence            455555    368999999986642   345677999999999999987 56554    799999999998         


Q ss_pred             cceeeeeeeccccceeEEEecC--CCCCcEEEEecCCcEEEEEcCCCCCCccc------------------ccccccCcc
Q 018697          109 QLERIAALDAHVGKINCVLWWS--SGRHDKLVSIDEENIFLWSLDCSNKNAQV------------------QSKQSSGML  168 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~d~~v~iwd~~~~~~~~~~------------------~~~~~~~~~  168 (351)
                      +.+.+..+.+|...|.+++|++  ++. .+++++.|+.|++||+.+.......                  ......+|.
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            6788889999999999999985  445 4677789999999999875433211                  111234566


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      ..+.++  +++++.+++++.|+.|++||+++++.+..+. +|   +.+++|+|+++ ++++|+.|+.|++||+++ ++++
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~-~~~~  345 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLEN-GELM  345 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTT-TEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcEE
Confidence            667666  5678999999999999999999988877776 34   99999999998 899999999999999997 7789


Q ss_pred             eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      ..+.+|...|.+++|++   .+|++++.||.|++||++.                   ....... .|...+..++|+|+
T Consensus       346 ~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~-------------------~~~~~~~-~~~~~~~~~~~~~~  402 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAND-------------------YSRKFSY-HHTNLSAITTFYVS  402 (464)
T ss_dssp             EEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTT-------------------CCEEEEE-ECTTCCCEEEEEEC
T ss_pred             EEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCC-------------------Cceeeee-cCCCCccEEEEEeC
Confidence            99999999999999983   7999999999999999987                   5544444 35566788899999


Q ss_pred             CCceEEEeeeCCeEEEeecCc
Q 018697          326 EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +. ++++++ ||.|++||+++
T Consensus       403 ~~-~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          403 DN-ILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             SS-EEEEEE-TTEEEEEETTT
T ss_pred             CC-EEEEec-CCeEEEEECCC
Confidence            98 788887 99999999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.6e-34  Score=244.52  Aligned_cols=281  Identities=14%  Similarity=0.169  Sum_probs=219.5

Q ss_pred             ceeEeeeecCCCCc---ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcc
Q 018697           15 QARCISDVKADTDH---TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY   91 (351)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~   91 (351)
                      +...|..+.++++.   ..++.|.    .++.|++|++...+. .....+.+|...|.+++|+|+++.|+++    +.|+
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~----~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg  108 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGS----WANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVFTA----SCDK  108 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEE----TTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEEEE----ETTS
T ss_pred             CCCceEEEEEcCCCCCceEEEEEC----CCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEEEE----cCCC
Confidence            44567788888884   7777764    579999999987443 3336677899999999999999988885    6899


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEe--cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW--WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      .|++||+.         ..+.+. +..|...|.+++|  +|++.. +++++.|+.|++||+.++.....+...      .
T Consensus       109 ~v~iwd~~---------~~~~~~-~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~------~  171 (368)
T 3mmy_A          109 TAKMWDLS---------SNQAIQ-IAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLP------E  171 (368)
T ss_dssp             EEEEEETT---------TTEEEE-EEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSCSSCSEEEECS------S
T ss_pred             cEEEEEcC---------CCCcee-eccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCCCcEEEEEecC------C
Confidence            99999998         444444 5679999999999  888873 667788999999999976544433321      2


Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee---cce-eEEEEcCCCCC---cEEEEecCCCeEEEEecccCC
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH-VRNVDYDTKKK---HLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~-v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      .+.++.+.+  ..+++++.++.+++||++.........   ..+ ..++++.++..   ..+++++.|+.|++||++...
T Consensus       172 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          172 RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            566666654  578889999999999998764332222   112 55555544433   238999999999999998732


Q ss_pred             --cceeEeeCCCC------------ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          243 --APIQELPGHTH------------WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       243 --~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                        ..+..+..|..            +|++++|+|++ .+|++++.||.|++||++.                   ++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~-------------------~~~~~  309 (368)
T 3mmy_A          250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDA-------------------RTKLK  309 (368)
T ss_dssp             HHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTT-------------------TEEEE
T ss_pred             ccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCC-------------------CcEEE
Confidence              45677777776            79999999999 9999999999999999998                   88899


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      .+..|...|++++|+|+++ +|++++.|+..+.|++
T Consensus       310 ~~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          310 TSEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ECCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGGG
T ss_pred             EecCCCCCceEEEECCCCC-eEEEEecccccccccc
Confidence            9999999999999999999 8999998876655554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.7e-34  Score=242.39  Aligned_cols=250  Identities=18%  Similarity=0.315  Sum_probs=194.4

Q ss_pred             cceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcc
Q 018697           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESY   91 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~   91 (351)
                      .+...|..+.+++++..++.|+    .++.|++|++.... ......+.+|.+.|.+++|+|.  +..|+++    +.|+
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~----s~D~   81 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASC----SYDR   81 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEE----ETTS
T ss_pred             cccCeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEE----ECCC
Confidence            3456678888899998888875    68999999997642 2334667899999999999863  6777774    7999


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      +|++||+..       ........+.+|...|.+++|+|+  +. ++++++.|+.|++||+.......  ......+|..
T Consensus        82 ~v~iWd~~~-------~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~--~~~~~~~h~~  151 (316)
T 3bg1_A           82 KVIIWREEN-------GTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWE--VKKINNAHTI  151 (316)
T ss_dssp             CEEEECCSS-------SCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEE--ECCBTTSSSS
T ss_pred             EEEEEECCC-------CcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcc--eeeeeccccC
Confidence            999999872       123456678899999999999998  44 46677899999999998643211  1122346777


Q ss_pred             ceeeeEECCC-----------------CCcEEEeecCCeEEEEEcccCC---cCceeecce---eEEEEcCCCC---CcE
Q 018697          170 YLSGGAWDPH-----------------DVNAVAATCESSVQFWDLRSMG---KTNSIEHAH---VRNVDYDTKK---KHL  223 (351)
Q Consensus       170 ~v~~~~~~~~-----------------~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~---v~~~~~~~~~---~~~  223 (351)
                      .+.+++|+|+                 +++|++++.|+.|++||++...   ....+. +|   |.+++|+|++   ..+
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCce
Confidence            8999999997                 3689999999999999997542   333343 45   9999999986   138


Q ss_pred             EEEecCCCeEEEEecccCC---cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          224 LVTAADESGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      |++++.|++|++||++...   .....+..|...|.+++|+|++ .+|++++.|+.|++|+...
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence            9999999999999987521   1234556789999999999999 9999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-33  Score=280.48  Aligned_cols=282  Identities=17%  Similarity=0.259  Sum_probs=237.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      ...+..+.+++++..++.|+    .++.|.+|++....   ....+.+|.+.|.+++|+|+++.|+++    +.|+.|++
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~----~d~~i~vw~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~d~~v~v  683 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCG----ADKTLQVFKAETGE---KLLDIKAHEDEVLCCAFSSDDSYIATC----SADKKVKI  683 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEE
T ss_pred             cccEEEEEECCCCCEEEEEe----CCCeEEEEECCCCC---EEEEeccCCCCEEEEEEecCCCEEEEE----eCCCeEEE
Confidence            45677788899998888774    67899999987653   345667999999999999999988885    68999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE-EEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL-VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      ||+.         +.+.+..+.+|...|.+++|+|++...++ +++.|+.|++||+.++.....     ..+|...|.++
T Consensus       684 wd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-----~~~h~~~v~~~  749 (1249)
T 3sfz_A          684 WDSA---------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT-----MFGHTNSVNHC  749 (1249)
T ss_dssp             EETT---------TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE-----ECCCSSCEEEE
T ss_pred             EECC---------CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe-----ecCCCCCEEEE
Confidence            9998         67888899999999999999997544344 558899999999987543322     23577799999


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---------------eeEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---------------HVRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      +|+|+++.+++++.||.|++||+++++....+...               .+.+++|+|++. .+++++ ++.+.+||+.
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~  827 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIH  827 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETT
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-EEEEEc-CCcEEEEEec
Confidence            99999999999999999999999987655444311               178899999998 566665 6899999999


Q ss_pred             cCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018697          240 MLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (351)
Q Consensus       240 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (351)
                      + ...+..+. +|...|.+++|+|++ .++++++.|+.|++||+..                   +..+..+.+|...|+
T Consensus       828 ~-~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~-------------------~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          828 T-SGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDS-------------------RLKVADCRGHLSWVH  886 (1249)
T ss_dssp             T-CCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTT-------------------TEEEEEECCCSSCEE
T ss_pred             C-CCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCC-------------------CceeeecCCCccceE
Confidence            8 44455554 899999999999999 9999999999999999998                   888899999999999


Q ss_pred             EEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          319 GLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +++|+|+++ .+++++.|+.|++|++..
T Consensus       887 ~v~~spdg~-~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          887 GVMFSPDGS-SFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEEHHH
T ss_pred             EEEECCCCC-EEEEEeCCCeEEEEEccc
Confidence            999999998 899999999999999764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-33  Score=260.13  Aligned_cols=282  Identities=12%  Similarity=0.136  Sum_probs=214.8

Q ss_pred             eEeeeecCCCCcc-eEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCc---ceeeeeeCCC-CCceEEEEeecCCcc
Q 018697           17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPN---EIWDLSSCPF-DQRIFSTVFSTGESY   91 (351)
Q Consensus        17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~-~~~l~~~~~~~~~d~   91 (351)
                      ..+..+.++++.. .++.+.    .++.+.+|++...   .....+.+|..   .|.+++|+|+ ++.|+++    +.|+
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg  229 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVG----DDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITV----GSDR  229 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEE----TTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEE----ETTC
T ss_pred             ccEEEEEECCCCCcEEEEEe----CCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEE----eCCC
Confidence            3456667777776 566553    6789999986553   23456778998   9999999999 8888775    6899


Q ss_pred             eEEEEEcccccCCCCCCcceeeeee-e---ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-----
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAAL-D---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-----  162 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----  162 (351)
                      .|++||+.         ..+.+..+ .   .|...|.+++|+ ++. .+++++.|+.|++||+.++.........     
T Consensus       230 ~i~vwd~~---------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  298 (615)
T 1pgu_A          230 KISCFDGK---------SGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  298 (615)
T ss_dssp             CEEEEETT---------TCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             eEEEEECC---------CCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc
Confidence            99999998         56777777 6   899999999999 777 3677788999999999864322111100     


Q ss_pred             -----------------------------------ccc---------------------------------Ccccceeee
Q 018697          163 -----------------------------------QSS---------------------------------GMLHYLSGG  174 (351)
Q Consensus       163 -----------------------------------~~~---------------------------------~~~~~v~~~  174 (351)
                                                         ...                                 +|...|.++
T Consensus       299 ~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~  378 (615)
T 1pgu_A          299 NQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL  378 (615)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred             CceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence                                               011                                 233344444


Q ss_pred             EECCCCCcEEEeecCCeEEEEEcc--------------------------------------------------------
Q 018697          175 AWDPHDVNAVAATCESSVQFWDLR--------------------------------------------------------  198 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d~~i~iwd~~--------------------------------------------------------  198 (351)
                      +| +++..+++++.|+.|++||++                                                        
T Consensus       379 ~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (615)
T 1pgu_A          379 DN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN  457 (615)
T ss_dssp             EC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred             EE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCC
Confidence            44 335556666555555555544                                                        


Q ss_pred             ------------------cCCcC-ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-CCCce
Q 018697          199 ------------------SMGKT-NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHWT  255 (351)
Q Consensus       199 ------------------~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v  255 (351)
                                        +++.. ..+. .|   +.+++|+|+++ +|++++.|+.|++||+++ .+++..+.+ |...|
T Consensus       458 ~l~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          458 YVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSET-YIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI  534 (615)
T ss_dssp             EEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE
T ss_pred             EEEEeecCCCeEEEEECCCccccccccC-CccCceEEEEECCCCC-EEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce
Confidence                              22211 1111 23   99999999998 899999999999999987 667777877 99999


Q ss_pred             eEEEecC----------CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc-ccceeeccccceEEEEEeCC
Q 018697          256 WAVCCNP----------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN-SLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       256 ~~~~~~~----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~  324 (351)
                      ++++|+|          ++ .+|++++.|+.|++||+..                   + +++..+.+|...|++++|+|
T Consensus       535 ~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~-------------------~~~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          535 NAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKR-------------------PMKIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             EEEEECCCC------CCSC-CEEEEEETTSCEEEEESSC-------------------TTCCEEETTSSTTCEEEEEEEE
T ss_pred             eEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCC-------------------CceechhhhcCccceEEEEEcC
Confidence            9999999          88 9999999999999999998                   5 77888899999999999999


Q ss_pred             CCCceEEEeeeCCeEEEeecCc
Q 018697          325 REPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +++  |++++.||.|++|+++.
T Consensus       595 ~~~--l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          595 PST--LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TTE--EEEEETTSCEEEEEEC-
T ss_pred             CCC--eEEecCCceEEEEeeec
Confidence            987  88999999999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-34  Score=250.59  Aligned_cols=259  Identities=13%  Similarity=0.160  Sum_probs=200.3

Q ss_pred             eeecCCcceeeeeeCCC---C-CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-----cccceeEEEecC
Q 018697           60 GLFSHPNEIWDLSSCPF---D-QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWS  130 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~---~-~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~  130 (351)
                      ...+|.+.|.+++|+|+   + ..++++    +.++.|++|++.         ..+.+..+..     |...|.+++|+|
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~----~~~~~v~vw~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFAT----VGSNRVTLYECH---------SQGEIRLLQSYVDADADENFYTCAWTY   79 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEE----EETTEEEEEEEC---------GGGCEEEEEEEECSCTTCCEEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEE----CCCCEEEEEEcC---------CCcEEEeeeeccccCCCCcEEEEEecc
Confidence            34589999999999984   3 345554    466699999998         3444444443     567899999999


Q ss_pred             CCC---CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCcee
Q 018697          131 SGR---HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSI  206 (351)
Q Consensus       131 ~~~---~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~  206 (351)
                      ++.   .++++++.|+.|++||+.++.....     ..+|...|.+++|+| ++..|++++.|+.|++||+++++....+
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKH-----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEE-----EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeee-----ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            943   2467778999999999987543322     235677999999999 8899999999999999999998877776


Q ss_pred             e--cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee----------------------------EeeCCCC
Q 018697          207 E--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ----------------------------ELPGHTH  253 (351)
Q Consensus       207 ~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------~~~~~~~  253 (351)
                      .  ..|   |.+++|+|++. ++++++.|+.|++||++. .+.+.                            ....|..
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            2  233   99999999998 899999999999999986 33332                            2234899


Q ss_pred             ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC--CCceEE
Q 018697          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--EPWIFA  331 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~  331 (351)
                      .|.+++|+  + .+|++++.|+.|++||++..........     ........+..+..|...|++++|+|+  +. +|+
T Consensus       233 ~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~  303 (366)
T 3k26_A          233 YVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIK-----PSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLA  303 (366)
T ss_dssp             CCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCC-----TTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEE
T ss_pred             eEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccc-----cCCcchheeccccccCCcEEEEEEcCCCCCc-EEE
Confidence            99999999  5 7999999999999999987322111000     000113456777889999999999999  88 899


Q ss_pred             EeeeCCeEEEeecCcc
Q 018697          332 SLSYDGRVVVESVKPF  347 (351)
Q Consensus       332 s~~~dg~v~vw~~~~~  347 (351)
                      +++.||.|++||+...
T Consensus       304 ~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EECTTSCEEEEECCSS
T ss_pred             EEecCCcEEEEECCCC
Confidence            9999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.3e-33  Score=248.46  Aligned_cols=242  Identities=15%  Similarity=0.212  Sum_probs=202.2

Q ss_pred             EEEeeecCCcce-eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCc
Q 018697           57 ICEGLFSHPNEI-WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD  135 (351)
Q Consensus        57 ~~~~~~~h~~~v-~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  135 (351)
                      ....+.+|...| .++.+  +++.|+++    +.|+.|++||+.         +.+.+..+.+|.+.|.+++|+|++  .
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sg----s~dg~i~vwd~~---------~~~~~~~~~~h~~~V~~l~~~~~~--~  175 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITG----ADDKMIRVYDSI---------NKKFLLQLSGHDGGVWALKYAHGG--I  175 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECSTT--E
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEE----cCCCcEEEEECC---------CCcEEEEEeCCCcCEEEEEEcCCC--E
Confidence            345677898875 66666  45677664    799999999998         678889999999999999999988  3


Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC--CCCCcEEEeecCCeEEEEEcccCCcCce--------
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--PHDVNAVAATCESSVQFWDLRSMGKTNS--------  205 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------  205 (351)
                      +++++.|++|++||+.++....     ...+|...|.+++|+  ++++++++++.|+.|++||++++.....        
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  250 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTH-----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP  250 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS
T ss_pred             EEEEeCCCCEEEEECCCCcEEE-----EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc
Confidence            8888999999999998654322     223567799999998  5778899999999999999997764321        


Q ss_pred             --------------eecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          206 --------------IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       206 --------------~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                                    ...+|   +.++  ++++. ++++++.|+.|++||+++ .+++..+.+|...|.+++|+|++ .++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l  325 (464)
T 3v7d_B          251 LVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHER-KRC  325 (464)
T ss_dssp             EEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTT-TEE
T ss_pred             eEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCC-CEE
Confidence                          12233   5454  56777 899999999999999997 77888999999999999999999 999


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++++.|+.|++||+++                   ++++..+.+|...|.+++|++  . ++++++.||.|++||+.+.
T Consensus       326 ~sg~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          326 ISASMDTTIRIWDLEN-------------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEETTSCEEEEETTT-------------------TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCcEEEEECCC-------------------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCC
Confidence            9999999999999998                   889999999999999999984  4 8999999999999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.8e-34  Score=282.00  Aligned_cols=273  Identities=14%  Similarity=0.259  Sum_probs=232.0

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +..+.++++...+++|+    .++.+.+|++....   ....+.+|...|.+++|+|+++.++++    +.|+.|++|++
T Consensus       964 i~~~~~sp~g~~l~~g~----~~g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~----~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGD----EDGAIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGKTLISS----SEDSVIQVWNW 1032 (1249)
T ss_dssp             EEEEEECTTSSEEEEEE----TTSCCEEEETTTTS---CEEECCCCSSCCCCEEECSSSSCEEEE----CSSSBEEEEET
T ss_pred             EEEEEEcCCCCEEEEEc----CCCCEEEEEcCCCc---eeeecccCCCceEEEEECCCCCEEEEE----cCCCEEEEEEC
Confidence            45566778888888875    57889999987643   235567899999999999999999885    79999999999


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (351)
                      .         ..+.. .+..|...|.++.|+|++.  +++++.|+.|++||+.++.....+     .+|...|.+++|+|
T Consensus      1033 ~---------~~~~~-~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1033 Q---------TGDYV-FLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVITGRIERDF-----TCHQGTVLSCAISS 1095 (1249)
T ss_dssp             T---------TTEEE-CCBCCSSCEEEEEECSSSE--EEEEESSSEEEEEETTTTCCCEEE-----ECCSSCCCCEEECS
T ss_pred             C---------CCceE-EEecCCCcEEEEEEcCCCc--EEEEECCCcEEEEECCCCceeEEE-----cccCCcEEEEEECC
Confidence            8         44443 4558999999999999876  788889999999999876544332     34667899999999


Q ss_pred             CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-------
Q 018697          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-------  248 (351)
Q Consensus       179 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------  248 (351)
                      +++.+++++.|+.|++||+.+++....+. +|   |.+++|+|+++ ++++++.||.|++||+++ ++.+..+       
T Consensus      1096 d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-~h~~~v~~~~~s~dg~-~lat~~~dg~i~vwd~~~-~~~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A         1096 DATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSD-GQLLHSCAPISVEE 1172 (1249)
T ss_dssp             SSSSCEEECCSSCCCEECSSSSSCSBCCC-CCSSCEEEEEECSSSS-EEEEEETTSCCCEEESSS-SCCCCCCCCCC---
T ss_pred             CCCEEEEEcCCCcEEEEECCCcceeeeec-cCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCC-CceEEEeccccccc
Confidence            99999999999999999999998887776 44   99999999998 899999999999999987 4444443       


Q ss_pred             --eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCC
Q 018697          249 --PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       249 --~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  326 (351)
                        ..|...|++++|+|++ .+|++++  |.|++||+.+                   ++.+..+..|...|.+++|+|++
T Consensus      1173 ~~~~~~~~v~~l~fs~dg-~~l~s~~--g~v~vwd~~~-------------------g~~~~~~~~~~~~i~~~~~s~dg 1230 (1249)
T 3sfz_A         1173 GTATHGGWVTDVCFSPDS-KTLVSAG--GYLKWWNVAT-------------------GDSSQTFYTNGTNLKKIHVSPDF 1230 (1249)
T ss_dssp             ----CCSCCCEEEECTTS-SCEEEES--SSEEEBCSSS-------------------CBCCCCCCCSSCCCCCCEECSSS
T ss_pred             cccccCceEEEEEECCCC-CEEEECC--CeEEEEECCC-------------------CceeeeeeccCCcccEEEECCCC
Confidence              5789999999999999 8888886  8999999998                   88888898899999999999999


Q ss_pred             CceEEEeeeCCeEEEeecC
Q 018697          327 PWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~  345 (351)
                      . ++++++.||.|++|++.
T Consensus      1231 ~-~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1231 R-TYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             C-CEEEECTTCCEEEECCC
T ss_pred             C-EEEEecCCcEEEEEeec
Confidence            9 89999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-33  Score=246.32  Aligned_cols=251  Identities=11%  Similarity=0.143  Sum_probs=196.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC-CCCCcEEEEecCCc
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-SGRHDKLVSIDEEN  144 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~d~~  144 (351)
                      .....++++|+...++++   ++.||.|+||++.....     ....+..+.+|.+.|.+++|+| ++. ++++++.|+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~---~~~~g~i~v~~~~~~~~-----~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~  105 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICE---ASGGGAFLVLPLGKTGR-----VDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCT  105 (402)
T ss_dssp             CSSCSEEECSSEEEEEBC---CSSSCCEEEEETTCCEE-----CCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSE
T ss_pred             cCCCcEEECCCeEEEEEE---EcCCCEEEEEECccCCC-----CCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCe
Confidence            344567888877666654   57899999999863100     0124456789999999999999 666 4777789999


Q ss_pred             EEEEEcCCCCCCccc--ccccccCcccceeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCceee-cce---eEEEEcC
Q 018697          145 IFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIE-HAH---VRNVDYD  217 (351)
Q Consensus       145 v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~---v~~~~~~  217 (351)
                      |++||+.++......  ......+|...|.+++|+|++ ..|++++.|+.|++||+++++....+. ..|   |.+++|+
T Consensus       106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence            999999875422111  112234677899999999998 588899999999999999998887773 244   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCc-eeEEEecCCCCCeEEEe---eCCCeEEEEEcCCCCCCCCCC
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHW-TWAVCCNPEYDGFILSA---GTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      |++. +|++++.|+.|++||+++ .+.+..+ ..|... +.++.|+|++ .+|++|   +.|+.|++||++.        
T Consensus       186 ~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~--------  254 (402)
T 2aq5_A          186 RDGA-LICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKH--------  254 (402)
T ss_dssp             TTSS-CEEEEETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTB--------
T ss_pred             CCCC-EEEEEecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCcc--------
Confidence            9998 799999999999999997 6677777 678776 8999999999 899999   7899999999987        


Q ss_pred             cccccCCccccccc-ceeec-cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          293 ESLVESPNQRANSL-LNSYS-DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       293 ~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                 ... +.... .|...+.+++|+|+++.++++++.|+.|++|++.+.
T Consensus       255 -----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          255 -----------LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             -----------CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             -----------ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence                       332 32222 466779999999999944456668999999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.7e-33  Score=238.46  Aligned_cols=224  Identities=13%  Similarity=0.091  Sum_probs=177.5

Q ss_pred             CCCEEEEEEeCCCCCeEEEEe------eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee
Q 018697           40 EENEVHLLRLSSGGTELICEG------LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI  113 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~------~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  113 (351)
                      .++.+++|++......+....      ...+...+.+++|+|||+.++++.  ++.|++|+|||+.         +.+++
T Consensus       102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as--~~~d~~i~iwd~~---------~~~~~  170 (365)
T 4h5i_A          102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS--SKVPAIMRIIDPS---------DLTEK  170 (365)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE--SCSSCEEEEEETT---------TTEEE
T ss_pred             CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE--CCCCCEEEEeECC---------CCcEE
Confidence            567899999887665444322      123445689999999999987664  6789999999998         66777


Q ss_pred             eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC---
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES---  190 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---  190 (351)
                      ..+. |...|.+++|+|+++  +++++.++.+.+|+..++......   ....|...+.+++|+|+++.+++++.++   
T Consensus       171 ~~~~-~~~~V~~v~fspdg~--~l~s~s~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          171 FEIE-TRGEVKDLHFSTDGK--VVAYITGSSLEVISTVTGSCIARK---TDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             EEEE-CSSCCCEEEECTTSS--EEEEECSSCEEEEETTTCCEEEEE---CCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             EEeC-CCCceEEEEEccCCc--eEEeccceeEEEEEeccCcceeee---ecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            7774 778899999999999  455544667788887765433222   2235667899999999999999998776   


Q ss_pred             -eEEEEEcccCCcC----ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEec
Q 018697          191 -SVQFWDLRSMGKT----NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCN  261 (351)
Q Consensus       191 -~i~iwd~~~~~~~----~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~  261 (351)
                       .+++||+......    ..+. .|   |.+++|+|+++ +|++|+.|++|+|||+++ .+++..+ .+|..+|++++|+
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEEC
T ss_pred             eEEeecccccceecceeeeeec-CCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEEC
Confidence             6888998765432    1222 33   99999999998 899999999999999997 6677764 6899999999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEcCC
Q 018697          262 PEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      |+| .+|+|++.|++|+|||+..
T Consensus       322 pdg-~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          322 PDS-TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTS-CEEEEEETTSEEEEEECCT
T ss_pred             CCC-CEEEEEeCCCeEEEEEcCC
Confidence            999 9999999999999999965

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=253.70  Aligned_cols=287  Identities=16%  Similarity=0.192  Sum_probs=229.5

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe-EEEEeeecCCcc-eeeeeeCC--CCCceEEEEeecCCcce
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNE-IWDLSSCP--FDQRIFSTVFSTGESYG   92 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~-v~~i~~~~--~~~~l~~~~~~~~~d~~   92 (351)
                      ..+..+.++|++..++++.     ++.+.+|++.....+ .....+.+|... |.+++|+|  +++.|+++    +.|+.
T Consensus        19 ~~v~~~~~spdg~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~----~~dg~   89 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG----DESGK   89 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE----ETTSE
T ss_pred             CceeEEEECCCCCEEEEec-----CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe----cCCCE
Confidence            4566777888999898875     678999998854111 234667899999 99999999  99988885    68999


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC----CcEEEEEcCCCCCCcccccccccCcc
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      |++|++..... ......+....+..|...|.+++|+|+++. +++++.+    +.|++||..  ...     ....+|.
T Consensus        90 v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d~~--~~~-----~~~~~~~  160 (615)
T 1pgu_A           90 VIVWGWTFDKE-SNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWDSG--NSL-----GEVSGHS  160 (615)
T ss_dssp             EEEEEEEEEGG-GTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETTTC--CEE-----EECCSCS
T ss_pred             EEEEeCCCCcc-cccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEECC--Ccc-----eeeecCC
Confidence            99999961000 000023667788889999999999999995 5555555    688888833  221     1223577


Q ss_pred             cceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceeec--c---eeEEEEcCCC-CCcEEEEecCCCeEEEEecccC
Q 018697          169 HYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEH--A---HVRNVDYDTK-KKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       169 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~--~---~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      ..|.+++|+|+++ .+++++.|+.|++||+++++....+..  .   .+.+++|+|+ ++ ++++++.|+.|++||+++ 
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-  238 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS-  238 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT-
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC-
Confidence            7999999999998 688999999999999998877766651  2   2899999999 87 899999999999999987 


Q ss_pred             CcceeEe-e---CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc----
Q 018697          242 KAPIQEL-P---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY----  313 (351)
Q Consensus       242 ~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  313 (351)
                      .+.+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||++.                   ++.+..+..+    
T Consensus       239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~-------------------~~~~~~~~~~~~~~  297 (615)
T 1pgu_A          239 GEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTT-------------------SKCVQKWTLDKQQL  297 (615)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTT-------------------TEEEEEEECCTTCG
T ss_pred             CCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCC-------------------CcEEEEEcCCCCcc
Confidence            6677887 5   899999999999 88 9999999999999999998                   7777777665    


Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ...+.++.|. ++. ++++++.|+.|++|++..
T Consensus       298 ~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          298 GNQQVGVVAT-GNG-RIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             GGCEEEEEEE-ETT-EEEEEETTSCEEEEETTE
T ss_pred             cCceeEEEeC-CCC-eEEEEECCCCEEEEECCC
Confidence            4678888886 677 899999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-32  Score=240.35  Aligned_cols=248  Identities=8%  Similarity=0.055  Sum_probs=192.1

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee--ccccceeEEEecCCCCCcEEEEe
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      +|.+.|.+++|+|+++.|+++   ++.|+.|+||++..       ...+.+..+.  .|...|.+++|+|++.. +++++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~---~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~  168 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIAC---ADSDKSLLVFDVDK-------TSKNVLKLRKRFCFSKRPNAISIAEDDTT-VIIAD  168 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEE---EGGGTEEEEEEECS-------SSSSCEEEEEEEECSSCEEEEEECTTSSE-EEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEE---ECCCCeEEEEECcC-------CCCceeeeeecccCCCCceEEEEcCCCCE-EEEEe
Confidence            455579999999999997555   47899999999871       1234455554  56789999999999984 66678


Q ss_pred             cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC---CCcEEEeecCCeEEEEEcccCCcCceeecce---eEEE
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH---DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV  214 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~  214 (351)
                      .++.|++|++.+...... ......+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..+|   |.++
T Consensus       169 ~~g~v~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             TTSEEEEEETTSCCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred             CCCcEEEEecCCcccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence            899999999986543320 11122356679999999999   8899999999999999999988777655455   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC-------------------------CCCceeEEEecCCCCCeEE
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------------------------HTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~l~  269 (351)
                      +|+ ++. +|++++.|+.|++||+++ ++++..+..                         ....|.+++|+|++ .+|+
T Consensus       248 ~~s-d~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~  323 (450)
T 2vdu_B          248 CCG-KDY-LLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVA  323 (450)
T ss_dssp             EEC-STT-EEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEE
T ss_pred             EEC-CCC-EEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEE
Confidence            999 887 899999999999999997 666666652                         23568999999999 8888


Q ss_pred             Eee-CCCeEEEEEc--CCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee-------CCeE
Q 018697          270 SAG-TDSTVNLWLV--STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY-------DGRV  339 (351)
Q Consensus       270 s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------dg~v  339 (351)
                      +++ .|+.|++|++  ...                .....+..+..| ..|.+++|+|+ . ++++.+.       +..|
T Consensus       324 ~~~~~d~~i~iw~~~~~~~----------------~~l~~~~~~~~~-~~v~~~~~~~~-~-~~v~~~~~~~~~~~~~~i  384 (450)
T 2vdu_B          324 FFVEATKCIIILEMSEKQK----------------GDLALKQIITFP-YNVISLSAHND-E-FQVTLDNKESSGVQKNFA  384 (450)
T ss_dssp             EEETTCSEEEEEEECSSST----------------TCEEEEEEEECS-SCEEEEEEETT-E-EEEEECCTTCCSSCCCSE
T ss_pred             EEECCCCeEEEEEeccCCC----------------CceeeccEeccC-CceEEEEecCC-c-EEEEEecccCCCCCCcce
Confidence            888 8999999999  430                002566677777 77999999995 3 4544432       5568


Q ss_pred             EEeecC
Q 018697          340 VVESVK  345 (351)
Q Consensus       340 ~vw~~~  345 (351)
                      .+|.+.
T Consensus       385 ~v~~~~  390 (450)
T 2vdu_B          385 KFIEYN  390 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-33  Score=266.05  Aligned_cols=306  Identities=9%  Similarity=0.017  Sum_probs=205.0

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe-EEE-------EeeecCCcceeeeeeCCCCCceEEEEeecCC
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LIC-------EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE   89 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~-------~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~   89 (351)
                      .+..+.++++...++.|+    .++.|++|++...... ...       ....+|.+.|.+++|+|++..++++   ++.
T Consensus       100 ~V~~v~~sp~g~~l~sgs----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~---g~~  172 (902)
T 2oaj_A          100 KITSIDTDASLDWMLIGL----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI---SYE  172 (902)
T ss_dssp             CEEEEECCTTCSEEEEEE----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE---ECS
T ss_pred             CEEEEEECCCCCEEEEEc----CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE---EeC
Confidence            466788889999888875    5899999998764211 000       1235799999999999975444444   478


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeecc------------------ccceeEEEecCCCCCcEEEEecCCcEEEEEcC
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAH------------------VGKINCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~  151 (351)
                      |+.| +||+.         ..+.+..+..|                  ...|.+++|+|++.. +++++.|+.|++||+.
T Consensus       173 dg~v-lWd~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          173 YVTL-TYSLV---------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDAN  241 (902)
T ss_dssp             SCEE-EEETT---------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETT
T ss_pred             CCcE-EEECC---------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECC
Confidence            9999 99998         45666666544                  578999999999984 6677899999999998


Q ss_pred             CCCCCcc-ccc---ccc------c---CcccceeeeEEC----CCC-CcE------------------------------
Q 018697          152 CSNKNAQ-VQS---KQS------S---GMLHYLSGGAWD----PHD-VNA------------------------------  183 (351)
Q Consensus       152 ~~~~~~~-~~~---~~~------~---~~~~~v~~~~~~----~~~-~~l------------------------------  183 (351)
                      +++.... .+.   .+.      .   .|...|.+++|+    |++ ..+                              
T Consensus       242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~  321 (902)
T 2oaj_A          242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY  321 (902)
T ss_dssp             TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred             CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence            7543221 000   000      0   123356666663    332 122                              


Q ss_pred             ----------------------------------------------EEeecCCeEEEEEcccCCcCce-------ee---
Q 018697          184 ----------------------------------------------VAATCESSVQFWDLRSMGKTNS-------IE---  207 (351)
Q Consensus       184 ----------------------------------------------~~~~~d~~i~iwd~~~~~~~~~-------~~---  207 (351)
                                                                    ++++.|+.|++||+.++.....       +.   
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~  401 (902)
T 2oaj_A          322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR  401 (902)
T ss_dssp             HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred             hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence                                                          3333345566666544321110       00   


Q ss_pred             ------------------------------cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce--eEe----
Q 018697          208 ------------------------------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI--QEL----  248 (351)
Q Consensus       208 ------------------------------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~----  248 (351)
                                                    .+|   +.+++|+|+++ +|++|+.|++|++||+... ...  ..+    
T Consensus       402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l  479 (902)
T 2oaj_A          402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHG-DIQDNASFEVNL  479 (902)
T ss_dssp             TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCC-TTTTTBCEEEEH
T ss_pred             CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCc-cccCCceEEeec
Confidence                                          011   34456788887 8999999999999999863 211  111    


Q ss_pred             e-----CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC-----CCCCc----c----cccCC-----------
Q 018697          249 P-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD-----ELPSE----S----LVESP-----------  299 (351)
Q Consensus       249 ~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~----~----~~~~~-----------  299 (351)
                      .     +|...|++++|+|++ .+||+|+.||+|+|||+......     .....    .    ....+           
T Consensus       480 ~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (902)
T 2oaj_A          480 SRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP  558 (902)
T ss_dssp             HHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred             hhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence            1     788999999999999 99999999999999999763110     00000    0    00000           


Q ss_pred             --cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          300 --NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       300 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        .+...+++..+.+|...|++++|+|+|  +||+|+.|++|++||++.
T Consensus       559 ~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          559 TGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             TTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTT
T ss_pred             CCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCC
Confidence              000124567788899999999999998  799999999999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.9e-32  Score=235.64  Aligned_cols=239  Identities=11%  Similarity=0.081  Sum_probs=182.3

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      ....|...|.+++|+|+++.|+++    +.+ .++||++.         ..+......  ...+..+++.++++.+++++
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g----~~~-~~~iw~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILS----TLK-SFEIYNVH---------PVAHIMSQE--MRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEE----CSS-EEEEEEET---------TEEEEEEEE--CSCCCEEEECTTSSEEEEEC
T ss_pred             ccccCCCceEEEEECCCCCEEEEE----cCC-EEEEEecC---------Ccceeeeee--cCCeEEEEEcCCCCEEEEEE
Confidence            446799999999999999888764    444 58899987         444443332  23578888998888645666


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-CcCceeecceeEEEEcCC
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHAHVRNVDYDT  218 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~v~~~~~~~  218 (351)
                      +.|++|++||+.++.....+.      +...|.+++|+++.  +++ ..++.|++||+.++ +.+..+.. ....+++++
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~  147 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR-FGGVCEFSN  147 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE-EEEEEEEET
T ss_pred             CCccEEEEEECCCCcEEEEEE------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc-CCceEEEEc
Confidence            778999999998754433322      33489999998753  333 35889999999988 66666654 433344555


Q ss_pred             CCCcEEEE-ecCCCeEEEEecccCC--------------cc-eeEeeCCCCceeEEEecCCCCCeEEEeeCCCe-EEEEE
Q 018697          219 KKKHLLVT-AADESGIHLWDLRMLK--------------AP-IQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWL  281 (351)
Q Consensus       219 ~~~~~l~~-~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd  281 (351)
                        ..++++ |+.||.|++||++...              .+ +..+.+|...|++++|+|++ .+|++++.|++ |++||
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEE
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEE
Confidence              323443 7899999999998632              12 78889999999999999999 99999999998 99999


Q ss_pred             cCCCCCCCCCCcccccCCcccccccceeec-c-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          282 VSTSNHDELPSESLVESPNQRANSLLNSYS-D-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +++                   ++++..+. + |...|++++|+|+++ +|++++.|+.|++||++..
T Consensus       225 ~~~-------------------~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          225 TED-------------------GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTT-------------------CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCC
T ss_pred             CCC-------------------CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCC
Confidence            998                   88888887 5 999999999999999 8999999999999999753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-33  Score=250.35  Aligned_cols=212  Identities=15%  Similarity=0.230  Sum_probs=173.0

Q ss_pred             eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC-CCCcEEEeecC
Q 018697          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE  189 (351)
Q Consensus       111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  189 (351)
                      ........|...|+||+|+|....++++++.||.|+|||+.++......   ...+|...|++++|+| ++.+|++++.|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            3445567889999999999977666778899999999999865433222   2346788999999998 57889999999


Q ss_pred             CeEEEEEcccCCcCceeecce-----eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      ++|++||++++.. ..+...+     +.+++|+|++. +|++|+.||.|++||++  .+.+..+.+|...|++++|+|++
T Consensus       187 ~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          187 GTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCC
Confidence            9999999986533 2332222     78899999998 89999999999999997  45678888999999999999999


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +.+|++++.|+.|++||++....                ...+....+|...|++++|+|++. +|++++.||.|++||+
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~----------------~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRG----------------KASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCS----------------SSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEES
T ss_pred             ceEEEEecCcceeeEEecccccc----------------cceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEEC
Confidence            67899999999999999987211                122233457899999999999999 8999999999999998


Q ss_pred             Cc
Q 018697          345 KP  346 (351)
Q Consensus       345 ~~  346 (351)
                      .+
T Consensus       326 ~~  327 (435)
T 4e54_B          326 SQ  327 (435)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7.8e-32  Score=234.95  Aligned_cols=262  Identities=14%  Similarity=0.143  Sum_probs=208.6

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.|++|++...  . ....+..| ..+.+++|+|+++.++++   ++.|+.|++||+.         +.+.+..+..
T Consensus         9 ~~d~~v~v~d~~~~--~-~~~~~~~~-~~~~~~~~s~dg~~l~~~---~~~d~~i~v~d~~---------~~~~~~~~~~   72 (391)
T 1l0q_A            9 SESDNISVIDVTSN--K-VTATIPVG-SNPMGAVISPDGTKVYVA---NAHSNDVSIIDTA---------TNNVIATVPA   72 (391)
T ss_dssp             TTTTEEEEEETTTT--E-EEEEEECS-SSEEEEEECTTSSEEEEE---EGGGTEEEEEETT---------TTEEEEEEEC
T ss_pred             CCCCEEEEEECCCC--e-EEEEeecC-CCcceEEECCCCCEEEEE---CCCCCeEEEEECC---------CCeEEEEEEC
Confidence            46789999998753  2 22334444 568999999999988665   4689999999998         5677777765


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE-EEeecCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~  197 (351)
                      +. .+.+++|+|+++.++++++.++.|++||+.++.......      +...+.+++|+|+++.+ ++++.++.|++||+
T Consensus        73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  145 (391)
T 1l0q_A           73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (391)
T ss_dssp             SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            55 899999999999644555678999999998754332222      12368999999999988 56677999999999


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee---C
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---T  273 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~  273 (351)
                      ++++....+.... +.+++|+|+++.++++++.++.|++||+++ .+.+..+. +...+.+++|+|++ .+|++++   .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~  222 (391)
T 1l0q_A          146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKY  222 (391)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSS
T ss_pred             CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCC-CEEEEEecCcC
Confidence            9988777776444 999999999986667888999999999987 55566555 56788999999999 7777777   6


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++.|++||+..                   ++.+..+..|.. +.+++|+|+++.++++++.|+.|++||+.+
T Consensus       223 ~~~v~~~d~~~-------------------~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          223 FNTVSMIDTGT-------------------NKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             CCEEEEEETTT-------------------TEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEECCC-------------------CeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            89999999998                   777777777654 789999999985557888999999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-32  Score=240.52  Aligned_cols=238  Identities=15%  Similarity=0.242  Sum_probs=191.7

Q ss_pred             ecCCcce--eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-cccceeEEEecCCCCCcEEE
Q 018697           62 FSHPNEI--WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        62 ~~h~~~v--~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~  138 (351)
                      .+|...+  .+++|++  ..++++    +.|+.|++|++.         ..+....+.. |...|.+++|+|++.. +++
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~----~~d~~v~lw~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~  151 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAV----ALERNVYVWNAD---------SGSVSALAETDESTYVASVKWSHDGSF-LSV  151 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEE----EETTEEEEEETT---------TCCEEEEEECCTTCCEEEEEECTTSSE-EEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEE----ECCCeEEEeeCC---------CCcEeEeeecCCCCCEEEEEECCCCCE-EEE
Confidence            3555544  3455654  556665    589999999998         4455555544 8899999999999984 667


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce---eEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNV  214 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~---v~~~  214 (351)
                      ++.||.|++||+.++.....+     .+|...|.+++|+  +..+++++.|+.|++||++... ....+. .|   |.++
T Consensus       152 ~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~  223 (401)
T 4aez_A          152 GLGNGLVDIYDVESQTKLRTM-----AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGL  223 (401)
T ss_dssp             EETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEE
T ss_pred             ECCCCeEEEEECcCCeEEEEe-----cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEE
Confidence            788999999999875433222     2567799999994  5789999999999999999543 344444 44   9999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee--CCCeEEEEEcCCCCCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG--TDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~  292 (351)
                      +|+|++. ++++|+.|+.|++||+++ .+++..+..|...|.+++|+|++..++++++  .|+.|++||++.        
T Consensus       224 ~~~~~~~-~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--------  293 (401)
T 4aez_A          224 AWRSDGL-QLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--------  293 (401)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--------
T ss_pred             EEcCCCC-EEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--------
Confidence            9999998 899999999999999997 6678888899999999999998867888866  799999999998        


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCceEEE--eeeCCeEEEeecCc
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS--LSYDGRVVVESVKP  346 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~dg~v~vw~~~~  346 (351)
                                 ++++..+. +...|.+++|+|+++ .+++  |+.||.|++|+++.
T Consensus       294 -----------~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          294 -----------GARVNTVD-AGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             -----------CCEEEEEE-CSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEET
T ss_pred             -----------CCEEEEEe-CCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCC
Confidence                       77777775 556799999999999 6766  44899999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=243.87  Aligned_cols=240  Identities=15%  Similarity=0.172  Sum_probs=187.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-----------------------------
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-----------------------------  116 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----------------------------  116 (351)
                      .++.+++|+|+++.|+++     .++.|++||+....      ..+.+..+                             
T Consensus         5 ~p~~~v~~s~dg~~l~~~-----~~~~i~v~d~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-----IKNCILSFKYQSPN------HWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN   73 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-----ETTEEEEEEEETTT------EEEEEEEEECCC-------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-----eCCeEEEEECCCCC------cceeeeecCCccccccccccccchhhccccccccccc
Confidence            478899999999966554     56789999987311      00022222                             


Q ss_pred             -------------------------eccccceeEEEecCCCCCcEEEEecCCcEEEEEcC--CCCCCcccccccccCccc
Q 018697          117 -------------------------DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD--CSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus       117 -------------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~  169 (351)
                                               ..|...|.+++|+|+++.++++++.|+.|++||+.  ++.....+..   ..|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~  150 (450)
T 2vdu_B           74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSK  150 (450)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSS
T ss_pred             cccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCC
Confidence                                     23555799999999999644666789999999998  5443332221   12345


Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc----eeecce---eEEEEcCCC---CCcEEEEecCCCeEEEEecc
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTK---KKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~---v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~  239 (351)
                      .+.+++|+|++++|++++.++.+++|++.+++...    .+. +|   |.+++|+|+   ++ +|++++.|+.|++||++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYP  228 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEES
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECC
Confidence            89999999999999999999999999998876543    333 33   999999999   87 89999999999999998


Q ss_pred             cCCcceeE-eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-------
Q 018697          240 MLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-------  311 (351)
Q Consensus       240 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  311 (351)
                      . ...+.. +.+|...|.+++|+ ++ .+|++++.|+.|++||++.                   ++++..+.       
T Consensus       229 ~-~~~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          229 Q-CFIVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKT-------------------GKNLSTFDYNSLIKP  286 (450)
T ss_dssp             C-TTCEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTT-------------------CCEEEEEECHHHHGG
T ss_pred             C-CceeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCC-------------------CcEeeeecchhhhhh
Confidence            7 555666 56899999999999 88 9999999999999999998                   55444443       


Q ss_pred             ------------------cccceEEEEEeCCCCCceEEEee-eCCeEEEeec
Q 018697          312 ------------------DYEDSVYGLAWSSREPWIFASLS-YDGRVVVESV  344 (351)
Q Consensus       312 ------------------~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~  344 (351)
                                        .....|.+++|+|+++ ++++++ .|+.|++|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEE
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEe
Confidence                              2235689999999999 677777 8999999999

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.1e-32  Score=236.14  Aligned_cols=287  Identities=14%  Similarity=0.189  Sum_probs=192.1

Q ss_pred             ceeEeeeecCCC-CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEee----------ecCCcceeeeeeCC-CCCceEE
Q 018697           15 QARCISDVKADT-DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGL----------FSHPNEIWDLSSCP-FDQRIFS   82 (351)
Q Consensus        15 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~h~~~v~~i~~~~-~~~~l~~   82 (351)
                      +...+..+.+++ +...++.|+    .++.|.+|++............          .+|...|.+++|+| ++..|++
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGG----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEE----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred             cCCcEEEEEEecCCCCEEEEEc----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence            445677888888 888888775    5789999999875443222111          25999999999999 4555655


Q ss_pred             EEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCC--cEEEEecCCcEEEEEcCCCCCCcccc
Q 018697           83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIFLWSLDCSNKNAQVQ  160 (351)
Q Consensus        83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~d~~v~iwd~~~~~~~~~~~  160 (351)
                      +    +.|+.|++||+.         ..+....+. +...+.++.|+|.+..  ++++++.|+.|++||+.++.....+ 
T Consensus       118 ~----~~d~~i~iwd~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-  182 (408)
T 4a11_B          118 S----SFDKTLKVWDTN---------TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-  182 (408)
T ss_dssp             E----ETTSEEEEEETT---------TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-
T ss_pred             E----eCCCeEEEeeCC---------CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-
Confidence            4    689999999998         556666664 7888999999986532  4777788999999999875443322 


Q ss_pred             cccccCcccceeeeEECCCCCc-EEEeecCCeEEEEEcccCCc-Cceee--------------cce---eEEEEcCCCCC
Q 018697          161 SKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGK-TNSIE--------------HAH---VRNVDYDTKKK  221 (351)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-~~~~~--------------~~~---v~~~~~~~~~~  221 (351)
                          .+|...|.+++|+|+++. +++++.|+.|++||++++.. ...+.              ..|   |.+++|+|+++
T Consensus       183 ----~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          183 ----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             ----CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             ----cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence                246679999999999996 77899999999999987652 22220              123   99999999998


Q ss_pred             cEEEEecCCCeEEEEecccCC----------------------------------------------cceeEeeCCCCce
Q 018697          222 HLLVTAADESGIHLWDLRMLK----------------------------------------------APIQELPGHTHWT  255 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~----------------------------------------------~~~~~~~~~~~~v  255 (351)
                       ++++++.|+.|++||+++..                                              +++..+.+|...|
T Consensus       259 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          259 -HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             -EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             -EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence             79999999999999987522                                              3455667899999


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      ++++|+|++ .+|++++.||.|++||+..                   .+++.....+..   ...+.+.....+.+.+.
T Consensus       338 ~~~~~s~~~-~~l~s~~~dg~i~iw~~~~-------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  394 (408)
T 4a11_B          338 DCCVFQSNF-QELYSGSRDCNILAWVPSL-------------------YEPVPDDDETTT---KSQLNPAFEDAWSSSDE  394 (408)
T ss_dssp             EEEEEETTT-TEEEEEETTSCEEEEEECC---------------------------------------------------
T ss_pred             EEEEEcCCC-CEEEEECCCCeEEEEeCCC-------------------CCccCCCCceEe---ccccccccceeecccCc
Confidence            999999999 9999999999999999998                   555544433322   23344433336677888


Q ss_pred             CCeEEEeecCccc
Q 018697          336 DGRVVVESVKPFL  348 (351)
Q Consensus       336 dg~v~vw~~~~~~  348 (351)
                      |+.+++|+.+.+.
T Consensus       395 ~~~~~~W~~~~~~  407 (408)
T 4a11_B          395 EGGTSAWSHPQFE  407 (408)
T ss_dssp             -------------
T ss_pred             cCceeecCCcccC
Confidence            9999999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-31  Score=229.66  Aligned_cols=259  Identities=14%  Similarity=0.213  Sum_probs=204.2

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCe-EEEEeeecCCcceeeeeeCC--CCCceEEEEeecCCcc
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCP--FDQRIFSTVFSTGESY   91 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~~~~~d~   91 (351)
                      +...|..+.++++...++.|.    .++.|++|++...... .....+.+|...|.+++|+|  ++..|+++    +.|+
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~----~~dg   81 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA----SYDK   81 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE----ETTS
T ss_pred             cccceeEEEEcCCCCEEEEee----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE----cCCC
Confidence            345677888888888888874    6899999999875443 34466778999999999999  57777775    6899


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEecCCcEEEEEcCCCCCCccccc--------
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQS--------  161 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------  161 (351)
                      .|++||+............+.+..+..|...|.+++|+|+  +. ++++++.|+.|++||+.+.........        
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            9999999842221112223667888899999999999999  77 366778899999999987654433221        


Q ss_pred             ccccCcccceeeeEECCC---CCcEEEeecCCeEEEEEcccCCc--Cceeecce---eEEEEcCCCCC---cEEEEecCC
Q 018697          162 KQSSGMLHYLSGGAWDPH---DVNAVAATCESSVQFWDLRSMGK--TNSIEHAH---VRNVDYDTKKK---HLLVTAADE  230 (351)
Q Consensus       162 ~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~---v~~~~~~~~~~---~~l~~~~~d  230 (351)
                      .....|...+.+++|+|+   +..+++++.++.+.+|+...++.  ...+. .|   |.+++|+|++.   .+|++++.|
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCC
Confidence            112256678999999997   88999999999998888776654  33333 34   99999999982   389999999


Q ss_pred             CeEEEEecccCC---------------------------------------------cceeEeeCCCCceeEEEecCCCC
Q 018697          231 SGIHLWDLRMLK---------------------------------------------APIQELPGHTHWTWAVCCNPEYD  265 (351)
Q Consensus       231 g~i~i~d~~~~~---------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~  265 (351)
                      |.|++||++...                                             +++..+.+|...|++++|+|++ 
T Consensus       240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-  318 (351)
T 3f3f_A          240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-  318 (351)
T ss_dssp             SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-
T ss_pred             CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-
Confidence            999999998621                                             4566778899999999999999 


Q ss_pred             CeEEEeeCCCeEEEEEcCC
Q 018697          266 GFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+|++++.||.|++||+..
T Consensus       319 ~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             CCEEEEETTSCEEEEEECT
T ss_pred             CEEEEecCCCcEEEEecCc
Confidence            9999999999999999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=240.26  Aligned_cols=236  Identities=8%  Similarity=-0.057  Sum_probs=180.9

Q ss_pred             eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018697           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (351)
Q Consensus        68 v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i  147 (351)
                      .....+.+++..++++    +.|+.|++||+.         ..+.+..+.  ...|.++.|+|+    +++++.|++|++
T Consensus        39 ~~~~~~~~d~~~l~sg----~~Dg~v~iwd~~---------~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~   99 (343)
T 3lrv_A           39 ELNKSMYYDKWVCMCR----CEDGALHFTQLK---------DSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLL   99 (343)
T ss_dssp             EECSSSSEEEEEEEEE----EETTEEEEEEES---------SSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEE
T ss_pred             hhhhhhcCCCCEEEEE----CCCCcEEEEECC---------CCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEE
Confidence            3444566677777764    799999999998         456666664  567888888887    777789999999


Q ss_pred             EEcCCCC-----CCcccccccccCcccceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          148 WSLDCSN-----KNAQVQSKQSSGMLHYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       148 wd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                      |+.....     ...........+|...|.+++|+|  +++++++++.|+.|++||+++++........+   +.+++|+
T Consensus       100 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             EEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC
Confidence            9876321     011112222234556899999999  99999999999999999999988755443232   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCCcce-eEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLKAPI-QELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      |++. ++++|+.||.|++||+++ .+.+ ..+.. |..+|++++|+|++ .+|++++ |+.|++||++.           
T Consensus       180 pdg~-~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~-----------  244 (343)
T 3lrv_A          180 KDSL-LLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRK-----------  244 (343)
T ss_dssp             TTSC-EEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTS-----------
T ss_pred             CCCC-EEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCC-----------
Confidence            9998 899999999999999998 4444 77887 99999999999999 9999999 55999999998           


Q ss_pred             ccCCcccccccceeecc---ccceEE--EEEeCCCCCceEEEeee-CCeEEEeecCc
Q 018697          296 VESPNQRANSLLNSYSD---YEDSVY--GLAWSSREPWIFASLSY-DGRVVVESVKP  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~l~s~~~-dg~v~vw~~~~  346 (351)
                              .+.+..+..   |...+.  +++|+|+++ +|++++. |+.|++|++.+
T Consensus       245 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          245 --------DVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             --------STTCBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECT
T ss_pred             --------CCcceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcc
Confidence                    444433332   434444  599999999 7888887 99999999854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.4e-32  Score=239.62  Aligned_cols=299  Identities=10%  Similarity=0.049  Sum_probs=192.9

Q ss_pred             eeeccccce--eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC------eEEEEeeecCCcceeeeeeCC----
Q 018697            8 IGYGLKYQA--RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCP----   75 (351)
Q Consensus         8 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~----   75 (351)
                      -.|.+.++.  ..+.+....++...++...    +++.|.+|.+.....      .........+...+..+.|++    
T Consensus         8 ~~~~lpl~~~p~~~~w~~~~~~~~~l~a~g----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T 4gq1_A            8 NQYQLPLNVRPYTTTWCSQSPSCSNLLAIG----HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSY   83 (393)
T ss_dssp             EEEECCTTCCEEEEEECTTSGGGTTEEEEE----ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEE
T ss_pred             CceEecCCCCCeEEEEeCCCCCCCCEEEEE----CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccc
Confidence            345555543  4456666666666665532    467888887664321      112222334445555555443    


Q ss_pred             ----------------CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC--------C
Q 018697           76 ----------------FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--------S  131 (351)
Q Consensus        76 ----------------~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~  131 (351)
                                      ++..|++    ++.|++|+|||+....    ......+..+.+|.+.|++++|+|        +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las----~~~d~~v~lw~~~~~~----~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLAC----VCQDNTVRLIITKNET----IITQHVLGGKSGHHNFVNDIDIADVYSADNRLA  155 (393)
T ss_dssp             ECC----------CCEEEEEEEE----EETTSCEEEEEEETTE----EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred             cccccCCCcceeecCCCCCEEEE----EeCCCcEEEEECCCCc----cceeeeecccCCCCCceEEEEEccccccccCCC
Confidence                            3334444    4799999999987210    001123445789999999999998        5


Q ss_pred             CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceee---
Q 018697          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIE---  207 (351)
Q Consensus       132 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~---  207 (351)
                      ++ ++++++.|++|+|||+.+........     +|...+.+++|+|++. +|++++.|+.|++||+++++......   
T Consensus       156 ~~-~las~s~D~tv~~Wd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~  229 (393)
T 4gq1_A          156 EQ-VIASVGDDCTLIIWRLTDEGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE  229 (393)
T ss_dssp             EE-EEEEEETTSEEEEEEEETTEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------
T ss_pred             CC-EEEEEECCCeEEEEECCCCceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC
Confidence            55 36666999999999998654333322     3556899999999875 68889999999999998875432221   


Q ss_pred             ---------------------cce---eEEEEcC-CCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEe--
Q 018697          208 ---------------------HAH---VRNVDYD-TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--  260 (351)
Q Consensus       208 ---------------------~~~---v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--  260 (351)
                                           .++   +.++.|+ |++. .+++++.|+++++||++. .+....+..|...+..+.+  
T Consensus       230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             -CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSC
T ss_pred             CcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEcc
Confidence                                 112   6778875 7887 899999999999999986 4444444444444433333  


Q ss_pred             ----------------cC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          261 ----------------NP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       261 ----------------~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                                      +| .+..++++|+.|+.|++||+..                   ++++..+..|..+|++++|+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-------------------~~~~~~~~~~~~~V~svafs  368 (393)
T 4gq1_A          308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-------------------KDSNSIPIQLGMPIVDFCWH  368 (393)
T ss_dssp             SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-------------------TTCCEEEEECSSCEEEEEEC
T ss_pred             ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC-------------------CcEEEEecCCCCcEEEEEEc
Confidence                            32 2325677888999999999998                   77788888888999999999


Q ss_pred             CCCCceEEEeeeCCeEEEeecCcc
Q 018697          324 SREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      |+|+ +||+++.|| +.+|.+..+
T Consensus       369 pdG~-~LA~as~~G-v~lvrL~gf  390 (393)
T 4gq1_A          369 QDGS-HLAIATEGS-VLLTRLMGF  390 (393)
T ss_dssp             TTSS-EEEEEESSE-EEEEEEGGG
T ss_pred             CCCC-EEEEEeCCC-eEEEEEeCc
Confidence            9999 899988655 666766543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-31  Score=236.62  Aligned_cols=253  Identities=17%  Similarity=0.364  Sum_probs=210.4

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.|.+|++....   ....+.+|...|.+++|+  +..++++    +.|+.|++||+.         ..+.+..+.+
T Consensus       176 ~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~----s~dg~i~~wd~~---------~~~~~~~~~~  237 (445)
T 2ovr_B          176 STDRTLKVWNAETGE---CIHTLYGHTSTVRCMHLH--EKRVVSG----SRDATLRVWDIE---------TGQCLHVLMG  237 (445)
T ss_dssp             ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEE--TTEEEEE----ETTSEEEEEESS---------SCCEEEEEEC
T ss_pred             eCCCeEEEEECCcCc---EEEEECCCCCcEEEEEec--CCEEEEE----eCCCEEEEEECC---------CCcEEEEEcC
Confidence            467899999987642   345677899999999996  4556664    789999999998         5678888999


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      |...|.+++|  ++. .+++++.|+.|++||+.++.....     ..+|...+.+++|  ++..+++++.|+.|++||++
T Consensus       238 ~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          238 HVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHT-----LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             CSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEE-----ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             CcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEE-----ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            9999999999  455 377778999999999986433222     2356678999999  68899999999999999999


Q ss_pred             cCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEee
Q 018697          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +++.+..+. .|   +.++.++  +. ++++|+.||.|++||+++ .+++..+..   |...|.+++|+  + .+|++++
T Consensus       308 ~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~  379 (445)
T 2ovr_B          308 TGNCIHTLT-GHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSS  379 (445)
T ss_dssp             TCCEEEEEC-CCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEE
T ss_pred             CCCEEEEEc-CCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEe
Confidence            998877776 34   7777774  44 799999999999999987 667888876   88899999996  3 7999999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee-----ccccceEEEEEeCCCCCceEEEeeeCCe----EEEee
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-----SDYEDSVYGLAWSSREPWIFASLSYDGR----VVVES  343 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~----v~vw~  343 (351)
                      .||.|++||+.+                   ++.+..+     ..|...|++++|+|++. ++++++.||.    |.+||
T Consensus       380 ~dg~v~iwd~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          380 DDGTVKLWDLKT-------------------GEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             TTSEEEEEETTT-------------------CCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEE
T ss_pred             CCCeEEEEECCC-------------------CceeeeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEE
Confidence            999999999998                   7777776     46888999999999988 8999999997    99999


Q ss_pred             cCcc
Q 018697          344 VKPF  347 (351)
Q Consensus       344 ~~~~  347 (351)
                      ++..
T Consensus       440 f~~~  443 (445)
T 2ovr_B          440 FDVD  443 (445)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.3e-31  Score=235.03  Aligned_cols=258  Identities=18%  Similarity=0.341  Sum_probs=214.7

Q ss_pred             CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCC
Q 018697           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (351)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (351)
                      ++..++.|+    .++.|++|++....   ....+.+|.+.|.+++|+  +..++++    +.|+.|++||+.       
T Consensus       128 ~g~~l~sg~----~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~----~~dg~i~vwd~~-------  187 (445)
T 2ovr_B          128 CGNRIVSGS----DDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISG----STDRTLKVWNAE-------  187 (445)
T ss_dssp             ETTEEEEEE----TTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEE----ETTSCEEEEETT-------
T ss_pred             cCCEEEEEE----CCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEE----eCCCeEEEEECC-------
Confidence            345566553    68999999987643   345677999999999997  4466664    799999999998       


Q ss_pred             CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe
Q 018697          107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       107 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                        +.+.+..+.+|...|.++.|++  . .+++++.|+.|++||+.++.....     ..+|...+.+++|  +++.++++
T Consensus       188 --~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          188 --TGECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHV-----LMGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             --TTEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEE-----EECCSSCEEEEEE--CSSCEEEE
T ss_pred             --cCcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEE-----EcCCcccEEEEEE--CCCEEEEE
Confidence              6788889999999999999964  3 377778999999999987543322     2356678999999  67899999


Q ss_pred             ecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018697          187 TCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (351)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  263 (351)
                      +.|+.|++||+++++.+..+. .|   +.+++|  ++. .+++++.|+.|++||+++ .+++..+.+|...+.++.++  
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--  328 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--  328 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--
T ss_pred             cCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--
Confidence            999999999999988877776 34   999999  566 799999999999999998 66888999999999988875  


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc---ccceEEEEEeCCCCCceEEEeeeCCeEE
Q 018697          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLSYDGRVV  340 (351)
Q Consensus       264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~v~  340 (351)
                      + .++++++.||.|++||++.                   ++++..+..   |...|.+++|++  . ++++++.||.|+
T Consensus       329 ~-~~l~~~~~dg~i~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~  385 (445)
T 2ovr_B          329 D-NILVSGNADSTVKIWDIKT-------------------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVK  385 (445)
T ss_dssp             T-TEEEEEETTSCEEEEETTT-------------------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEE
T ss_pred             C-CEEEEEeCCCeEEEEECCC-------------------CcEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEE
Confidence            4 7999999999999999998                   777777765   888999999964  4 899999999999


Q ss_pred             EeecCc
Q 018697          341 VESVKP  346 (351)
Q Consensus       341 vw~~~~  346 (351)
                      +||+.+
T Consensus       386 iwd~~~  391 (445)
T 2ovr_B          386 LWDLKT  391 (445)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.1e-31  Score=219.26  Aligned_cols=268  Identities=9%  Similarity=0.051  Sum_probs=190.1

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      .+..+.+|+..+.-..........|+.+|..+.+.|+...|++++.  |.=..-.++.+.-.   .+...........+|
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~v~sla~s---pd~~~~~~~l~s~g~  135 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL--GNLEIREIRALFCS---SDDESEKQVLLKSGN  135 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE--CSSSEEEEEEECC---------CCEEEEEEEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee--ccccccceEEEEEC---CCccccccEEEeCCC
Confidence            4678889998886444556778899999999999999888887753  22222223333210   000011222222456


Q ss_pred             ccceeEEEecCCCCCcEEEEe---cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC---CCCcEEEeecCCeEE
Q 018697          120 VGKINCVLWWSSGRHDKLVSI---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HDVNAVAATCESSVQ  193 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~  193 (351)
                      ...|..+   ++++  ++.++   .|+.|++|++....+....    ...|...+..++|+|   ++..|++++.|++|+
T Consensus       136 ~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s----~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk  206 (356)
T 2w18_A          136 IKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKEN----QFLMPPEETILTFAEVQGMQEALLGTTIMNNIV  206 (356)
T ss_dssp             EEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEE----EEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred             eEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeee----eccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence            6666665   5555  55553   4999999999653332221    124556888899998   778999999999999


Q ss_pred             EEEcccCCcCceeecce-----eEEEEcCCCCCcE-----------EEEecCCCeEEEEecccCCcceeEe-----eCCC
Q 018697          194 FWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHL-----------LVTAADESGIHLWDLRMLKAPIQEL-----PGHT  252 (351)
Q Consensus       194 iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~~~-----------l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~  252 (351)
                      +||+++++.+.++...+     +.+++|+|++..+           +++|+.|++|++||..+ ++.+..+     .+|.
T Consensus       207 IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~  285 (356)
T 2w18_A          207 IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQA  285 (356)
T ss_dssp             EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCC
T ss_pred             EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCc
Confidence            99999999998887332     7788999999732           26688899999999987 6555554     3666


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE-EEEeCCCCCceEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY-GLAWSSREPWIFA  331 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~  331 (351)
                      ..+.+..++  + .++++++.|++|+|||+.+                   ++++.++.+|...+. .++|+|+|+ +|+
T Consensus       286 ~~~lsg~~s--g-~~lASgS~DgTIkIWDl~t-------------------Gk~l~tL~gH~~~vvs~vafSPDG~-~La  342 (356)
T 2w18_A          286 GRFLEGDVK--D-HCAAAILTSGTIAIWDLLL-------------------GQCTALLPPVSDQHWSFVKWSGTDS-HLL  342 (356)
T ss_dssp             CCEEEEEEE--T-TEEEEEETTSCEEEEETTT-------------------CSEEEEECCC--CCCCEEEECSSSS-EEE
T ss_pred             ceeEccccC--C-CEEEEEcCCCcEEEEECCC-------------------CcEEEEecCCCCCeEEEEEECCCCC-EEE
Confidence            555544444  5 7999999999999999999                   999999999987665 589999999 899


Q ss_pred             EeeeCCeEEEeecC
Q 018697          332 SLSYDGRVVVESVK  345 (351)
Q Consensus       332 s~~~dg~v~vw~~~  345 (351)
                      +|+.|++|+|||+.
T Consensus       343 SGS~D~TIklWd~~  356 (356)
T 2w18_A          343 AGQKDGNIFVYHYS  356 (356)
T ss_dssp             EECTTSCEEEEEEC
T ss_pred             EEECCCcEEEecCC
Confidence            99999999999963

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.6e-32  Score=232.63  Aligned_cols=252  Identities=15%  Similarity=0.200  Sum_probs=197.4

Q ss_pred             EEEeeecCCcceeeeeeCCCC---CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCC
Q 018697           57 ICEGLFSHPNEIWDLSSCPFD---QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR  133 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~---~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  133 (351)
                      ....+.+|.+.|.+++|+|++   +.|+++    +.|+.|++|++..       ........+.+|...|.+++|+|+++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~----~~dg~i~iw~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAG----SWANDVRCWEVQD-------SGQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEE----ETTSEEEEEEECT-------TSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEE----CCCCcEEEEEcCC-------CCceeEEEeccccCCEEEEEECcCCC
Confidence            345677899999999999994   677664    7899999999982       12233377889999999999999998


Q ss_pred             CcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE--CCCCCcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018697          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW--DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      . +++++.|+.|++||+.++....      ...|...|.+++|  +|++..+++++.|+.|++||+++++.+..+.... 
T Consensus       100 ~-l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  172 (368)
T 3mmy_A          100 K-VFTASCDKTAKMWDLSSNQAIQ------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER  172 (368)
T ss_dssp             E-EEEEETTSEEEEEETTTTEEEE------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred             E-EEEEcCCCcEEEEEcCCCCcee------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence            4 6677889999999998653222      2246679999999  9999999999999999999999998888887444 


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCe----EEEeeCCCeEEEEEcCCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGF----ILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~----l~s~~~dg~i~iwd~~~~  285 (351)
                      +.++.+.+.   .+++++.++.+++|+++........+. .+...+.++.+.++. ..    +++++.|+.|++||++..
T Consensus       173 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          173 CYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK-QNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             EEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT-TSCEEEEEEEETTSEEEEEESSCS
T ss_pred             ceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC-CCCCCeEEEecCCCcEEEEecCCC
Confidence            777777653   577788899999999987444333332 234556666666555 43    999999999999999871


Q ss_pred             CCCCCCCcccccCCcccccccceeeccccc------------eEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          286 NHDELPSESLVESPNQRANSLLNSYSDYED------------SVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ..                ...+..+..|..            .|++++|+|+++ +|++++.||.|++||+.+.
T Consensus       249 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          249 NP----------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             CH----------------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTT
T ss_pred             Cc----------------cccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCC
Confidence            10                145666666665            799999999998 8999999999999999853

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-31  Score=235.85  Aligned_cols=278  Identities=12%  Similarity=0.084  Sum_probs=214.1

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEE--eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICE--GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      +.+++ ..+++++.   ..++.|++|++..........  .+.+|.+.|.+++|+|++..++++    +.|+.|++||+.
T Consensus       128 ~~~s~-~~~~~~~~---~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----~~d~~v~~~d~~  199 (433)
T 3bws_A          128 VRFID-NTRLAIPL---LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ----MQANAVHVFDLK  199 (433)
T ss_dssp             CEESS-SSEEEEEB---TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE----GGGTEEEEEETT
T ss_pred             EEEeC-CCeEEEEe---CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEE----CCCCEEEEEECC
Confidence            34555 33444332   345779999877543211000  345788999999999988777664    789999999998


Q ss_pred             cccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC
Q 018697          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (351)
                               ..+.+..+..|...+.+++|+|+++.++++++.|+.|++||+.++.....+..      ...+.+++|+|+
T Consensus       200 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~  264 (433)
T 3bws_A          200 ---------TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------IGLPRGLLLSKD  264 (433)
T ss_dssp             ---------TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------CSEEEEEEECTT
T ss_pred             ---------CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------CCCceEEEEcCC
Confidence                     56777888889999999999999996444556799999999986533222211      226899999999


Q ss_pred             CCcEEEee--------cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC
Q 018697          180 DVNAVAAT--------CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG  250 (351)
Q Consensus       180 ~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  250 (351)
                      ++.+++++        .|+.|++||+++++....+.... +.+++|+|+++.++++++.++.|++||+++ .+.+..+. 
T Consensus       265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-  342 (433)
T 3bws_A          265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-  342 (433)
T ss_dssp             SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-
T ss_pred             CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-
Confidence            99999887        48899999999887766654334 899999999986778889999999999986 65666665 


Q ss_pred             CCCceeEEEecCCCCCeEEEeeC---------------CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGT---------------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      +...+.+++|+|++ .++++++.               ||.|++||..+                   ++.+..+..+ .
T Consensus       343 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------------------~~~~~~~~~~-~  401 (433)
T 3bws_A          343 VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------------------DTVKEFWEAG-N  401 (433)
T ss_dssp             CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------------------TEEEEEEECS-S
T ss_pred             CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCC-------------------CcEEEEecCC-C
Confidence            67889999999999 77777765               57999999988                   7777777664 4


Q ss_pred             eEEEEEeCCCCCceEEEee-eCCeEEEeecCc
Q 018697          316 SVYGLAWSSREPWIFASLS-YDGRVVVESVKP  346 (351)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~  346 (351)
                      .+.+++|+|+++ +|++++ .|+.|++|+++.
T Consensus       402 ~~~~~~~s~dg~-~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          402 QPTGLDVSPDNR-YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SEEEEEECTTSC-EEEEEETTTTEEEEEEETT
T ss_pred             CCceEEEcCCCC-EEEEEECCCCeEEEEEecC
Confidence            689999999999 566555 599999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=9.5e-31  Score=224.97  Aligned_cols=290  Identities=11%  Similarity=0.085  Sum_probs=203.0

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      ....+..+.+++++..++.|.     ++.+++|++.+..  ....   .+...+..+++.++++.++.+   ++.|++|+
T Consensus        18 h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~d~~v~   84 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVA--HIMS---QEMRHLSKVRMLHRTNYVAFV---TGVKEVVH   84 (355)
T ss_dssp             -CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEE--EEEE---EECSCCCEEEECTTSSEEEEE---CSSTTEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcc--eeee---eecCCeEEEEEcCCCCEEEEE---ECCccEEE
Confidence            345677788999999888874     3457888877532  1111   222357888899888887665   57889999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCC-CCCcccccccccCcccceee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSG  173 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~  173 (351)
                      +||+.         +.+.+..+. |...|.+++|+++.   +++ +.|+.|++||+.+. .....+..        +...
T Consensus        85 iWd~~---------~~~~~~~~~-~~~~v~~v~~~~~~---~~~-~~~~~i~i~d~~~~~~~~~~~~~--------~~~~  142 (355)
T 3vu4_A           85 IWDDV---------KKQDVSRIK-VDAPVKDLFLSREF---IVV-SYGDVISVFKFGNPWKRITDDIR--------FGGV  142 (355)
T ss_dssp             EEETT---------TTEEEEEEE-CSSCEEEEEECSSE---EEE-EETTEEEEEESSTTCCBSSCCEE--------EEEE
T ss_pred             EEECC---------CCcEEEEEE-CCCceEEEEEcCCE---EEE-EEcCEEEEEECCCCceeeEEecc--------CCce
Confidence            99988         567777775 67799999999863   233 34789999999975 33222221        2334


Q ss_pred             eEECCCCCcEEE--eecCCeEEEEEcccCC----------------cCceeecce---eEEEEcCCCCCcEEEEecCCCe
Q 018697          174 GAWDPHDVNAVA--ATCESSVQFWDLRSMG----------------KTNSIEHAH---VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       174 ~~~~~~~~~l~~--~~~d~~i~iwd~~~~~----------------~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                      +++++  ..+++  ++.+|.|++||++++.                ....+. +|   |.+++|+|++. +|++|+.|++
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~-~l~s~s~d~~  218 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSD-MVATCSQDGT  218 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSS-EEEEEETTCS
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCC-EEEEEeCCCC
Confidence            45666  55665  5789999999999765                134444 55   99999999998 8999999998


Q ss_pred             -EEEEecccCCcceeEee-C-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc-cccccce
Q 018697          233 -IHLWDLRMLKAPIQELP-G-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-RANSLLN  308 (351)
Q Consensus       233 -i~i~d~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~  308 (351)
                       |++||+++ ++++..+. + |...|.+++|+|++ .+|++++.|++|++||++.........-.....+.. .......
T Consensus       219 ~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          219 IIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             EEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             EEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence             99999997 66788888 5 99999999999999 999999999999999998632211100000000000 0000000


Q ss_pred             --ee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          309 --SY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       309 --~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        .+ ..+......++|+++++ .+++++.||.+++|++.+
T Consensus       297 ~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          297 NFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEE
T ss_pred             EEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEc
Confidence              11 11222346699999998 899999999999999865

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-32  Score=258.29  Aligned_cols=242  Identities=10%  Similarity=0.073  Sum_probs=190.8

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ....+|.+.|.+++|+|+++.|+++    +.|+.|+||+..         ..+....+ .|...|.+++|+| ++ ++++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsg----s~Dg~I~lw~~~---------~~~~~~~~-~~~~~V~~l~fsp-g~-~L~S   74 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIA----TVTGEVHIYGQQ---------QVEVVIKL-EDRSAIKEMRFVK-GI-YLVV   74 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEE----ETTSEEEEECST---------TCEEEEEC-SSCCCEEEEEEET-TT-EEEE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEE----eCCCEEEEEeCC---------CcEEEEEc-CCCCCEEEEEEcC-CC-EEEE
Confidence            4456899999999999999888875    799999999987         44444444 5788999999999 66 4777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc----------eeec
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN----------SIEH  208 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----------~~~~  208 (351)
                      ++.|++|++||+.++.....+.      |...|++++|+|+++++++++.||.|++||+++++...          ....
T Consensus        75 ~s~D~~v~lWd~~~~~~~~~~~------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           75 INAKDTVYVLSLYSQKVLTTVF------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             EETTCEEEEEETTTCSEEEEEE------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             EECcCeEEEEECCCCcEEEEEc------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            7899999999998754333221      33489999999999999999999999999999876420          0112


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC------------------CCceeEEEecCCCCCe
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------------------THWTWAVCCNPEYDGF  267 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~  267 (351)
                      +|   |.+++|+|++..++++|+.|+.| +||++. .+++..+..|                  ...|++++|+|+| .+
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~  225 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LH  225 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SE
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CE
Confidence            34   99999999764489999999999 999997 6677777655                  5779999999999 99


Q ss_pred             EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee--e---c-------------cccceEEEEEeC----CC
Q 018697          268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS--Y---S-------------DYEDSVYGLAWS----SR  325 (351)
Q Consensus       268 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-------------~~~~~v~~~~~~----~~  325 (351)
                      |++++.|+.|++||++.                   ++++..  +   .             .|...|++++|+    |+
T Consensus       226 lasgs~Dg~i~lWd~~~-------------------g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd  286 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANS-------------------GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE  286 (902)
T ss_dssp             EEEEETTCCEEEEETTT-------------------CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred             EEEEECCCeEEEEECCC-------------------CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence            99999999999999987                   443321  1   1             245579999995    55


Q ss_pred             CCceEEEeeeC-----CeEEEeec
Q 018697          326 EPWIFASLSYD-----GRVVVESV  344 (351)
Q Consensus       326 ~~~~l~s~~~d-----g~v~vw~~  344 (351)
                      +..++++++.|     ..+.+|++
T Consensus       287 ~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          287 YTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCEEEEeCCCCCCCCCceEEEEec
Confidence            44478888766     37888885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=230.71  Aligned_cols=250  Identities=16%  Similarity=0.301  Sum_probs=198.6

Q ss_pred             ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCc
Q 018697           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGES   90 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d   90 (351)
                      +.+...|..+.++++...++.|.    .++.|++|++..... .....+.+|...|.+++|+|+  +..|+++    +.|
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~d   78 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASC----SYD   78 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETT
T ss_pred             cCCcccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEe----ccC
Confidence            33456678888899998888874    578999999985433 334567789999999999987  7777775    689


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      +.|++||+..       .....+..+..|...|.+++|+|+  +. ++++++.|+.|++||+..........   ...|.
T Consensus        79 g~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~  147 (379)
T 3jrp_A           79 GKVLIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPII---IDAHA  147 (379)
T ss_dssp             SCEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEE---EECCT
T ss_pred             CEEEEEEcCC-------CceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEE---ecCCC
Confidence            9999999982       223377788889999999999999  66 47777899999999998754333222   23566


Q ss_pred             cceeeeEECC-------------CCCcEEEeecCCeEEEEEcccCCcCceee---cce---eEEEEcCCC---CCcEEEE
Q 018697          169 HYLSGGAWDP-------------HDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH---VRNVDYDTK---KKHLLVT  226 (351)
Q Consensus       169 ~~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~---v~~~~~~~~---~~~~l~~  226 (351)
                      ..|.+++|+|             ++..+++++.|+.|++||++++.......   ..|   |.+++|+|+   +. +|++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s  226 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLAS  226 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEE
Confidence            7899999999             68999999999999999999776432221   233   999999999   66 8999


Q ss_pred             ecCCCeEEEEecccCCcc----eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          227 AADESGIHLWDLRMLKAP----IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++.||.|++||++....+    +.....|...|.+++|+|++ .+|++++.||.|++|++..
T Consensus       227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred             EeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence            999999999999874321    22223488899999999999 9999999999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-31  Score=225.91  Aligned_cols=270  Identities=12%  Similarity=0.079  Sum_probs=191.7

Q ss_pred             CCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018697           26 TDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (351)
Q Consensus        26 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (351)
                      .+...++.|.    .++.|++|++.........   .  ...|.++.|+|+   +++    ++.|++|++|+........
T Consensus        46 ~d~~~l~sg~----~Dg~v~iwd~~~~~~~~~~---~--~~~v~~~~~~~~---~~s----~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCRC----EDGALHFTQLKDSKTITTI---T--TPNPRTGGEHPA---IIS----RGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEEE----ETTEEEEEEESSSSCEEEE---E--EECCCTTCCCCS---EEE----ECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEC----CCCcEEEEECCCCcEEEEE---e--cCCceeeeeCCc---eEE----ecCCCeEEEEEccCceEEe
Confidence            3455566654    5899999999875432221   1  567889999997   555    4899999999876211000


Q ss_pred             CCCcceeeeee-eccccceeEEEecC--CCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc
Q 018697          106 NSPQLERIAAL-DAHVGKINCVLWWS--SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (351)
Q Consensus       106 ~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (351)
                      +....+.+..+ ..|.++|.+++|+|  ++.. +++++.|+.|++||+.++... ....   ..+...+.+++|+|++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~-~~~~---~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQY-IVHS---AKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEE-EEEC---CCSSCCCCEEEECTTSCE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEE-EEEe---cCCCCceEEEEECCCCCE
Confidence            00122223333 26778999999999  8883 666789999999999975442 1111   123447999999999999


Q ss_pred             EEEeecCCeEEEEEcccCCcC-ceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC---CCCce
Q 018697          183 AVAATCESSVQFWDLRSMGKT-NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWT  255 (351)
Q Consensus       183 l~~~~~d~~i~iwd~~~~~~~-~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v  255 (351)
                      +++|+.|+.|++||+++++.. ..+...|   |.+++|+|++. +|++++. +.|++||+++ .+.+..+..   |...+
T Consensus       185 lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~~-~~v~iwd~~~-~~~~~~~~~~~~~~~~~  261 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVECD-QTVVCFDLRK-DVGTLAYPTYTIPEFKT  261 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEES-SBEEEEETTS-STTCBSSCCCBC-----
T ss_pred             EEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEeC-CeEEEEEcCC-CCcceeecccccccccc
Confidence            999999999999999999877 5666425   99999999998 7888884 4999999997 444444332   44455


Q ss_pred             e--EEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC---CCCce
Q 018697          256 W--AVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS---REPWI  329 (351)
Q Consensus       256 ~--~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  329 (351)
                      .  +++|+|++ .+|++++. |+.|++|++..                   .......    .++..+.|.+   +.. .
T Consensus       262 ~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~-------------------~~~~~~~----~~~~~~~~~~~~~~~~-~  316 (343)
T 3lrv_A          262 GTVTYDIDDSG-KNMIAYSNESNSLTIYKFDK-------------------KTKNWTK----DEESALCLQSDTADFT-D  316 (343)
T ss_dssp             CCEEEEECTTS-SEEEEEETTTTEEEEEEECT-------------------TTCSEEE----EEEEECCC----CCCC-E
T ss_pred             cceEEEECCCC-CEEEEecCCCCcEEEEEEcc-------------------cccceEe----cCceeEecCccccccc-e
Confidence            4  59999999 99999888 99999999976                   2222222    4678888988   777 7


Q ss_pred             EEEeeeCCeEEEeec
Q 018697          330 FASLSYDGRVVVESV  344 (351)
Q Consensus       330 l~s~~~dg~v~vw~~  344 (351)
                      +++++.|+.+.++-.
T Consensus       317 l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          317 MDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEEEEETTEEEEEEE
T ss_pred             eEEEecCCceEEEEe
Confidence            888888999888753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=238.52  Aligned_cols=264  Identities=9%  Similarity=0.027  Sum_probs=197.1

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      .++..+.++||+..++.+.    .+..|+  +  +...    +.+.+|+..|++++|+|+|           .++.+.+|
T Consensus        16 ~~v~sv~~SpDG~~iASas----~D~TV~--d--~~~~----~~l~gh~~~v~~V~FsPdg-----------~~~~~~~~   72 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTF----PDISIG--Q--PKYA----KDINCNSKNLFHVKEFPLE-----------FENKLDFE   72 (588)
T ss_dssp             SSSCCEEECTTSCEEEECS----SSEEEE--E--ECCC----SCCSSBGGGTEEEEEECCC-----------CCCTTTTS
T ss_pred             ccEEEEEECCCCCEEEEEc----CCceee--c--cccc----ceecCCCccEEEEEECCCC-----------CcceEEEE
Confidence            3566788999999888763    466665  3  1111    2336899999999999987           35555556


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      +..          ......+ .|...|.+++|+|+|.. +++++.||.|++||...   ..........-....+.+++|
T Consensus        73 ~~~----------~~~~~~~-~~~~~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~---~l~~l~~~~~~~~~sv~svaf  137 (588)
T 2j04_A           73 LAQ----------QNGLLNS-QPVCYPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK---MLTNLDSKGNLSSRTYHCFEW  137 (588)
T ss_dssp             CCC----------SSCSSTT-SCSCCEEEEEECSSSSC-EEEEETTSCEEEEETTE---EEEECCCSSCSTTTCEEEEEE
T ss_pred             eCC----------CceEeec-CCCCcEEEEEECCCCCE-EEEEeCCCcEEEEeCCc---eeeeccCCCccccccEEEEEE
Confidence            543          1222233 45789999999999995 66778999999999653   111111110000225999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCc-------Cceee---cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGK-------TNSIE---HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~---~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      +|+|++|++++.||+|++||+.++..       +.++.   .+|   |.+++|+|+|   +++++.|++|++||+.....
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc
Confidence            99999999999999999999998753       34442   344   9999999998   67788899999999986331


Q ss_pred             --ceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          244 --PIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       244 --~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                        ..+++ .+|...|.+++|+  + ..||+++ +++|++||+..                   ........+|...|.++
T Consensus       215 ~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~-------------------~~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          215 QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKN-------------------YSISSLKTGSLENFHII  271 (588)
T ss_dssp             CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTT-------------------TEEEEEECSCCSCCCEE
T ss_pred             ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCC-------------------CeEEEEEcCCCceEEEE
Confidence              23456 4788999999999  5 7888887 69999999987                   55533333799999999


Q ss_pred             Ee--CCCCCceEEEeeeCCeEEEeecCc
Q 018697          321 AW--SSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       321 ~~--~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +|  +|++. .+++++.||. ++|..+.
T Consensus       272 a~~~s~d~~-~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          272 PLNHEKEST-ILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             EETTCSSCE-EEEECSSCEE-EEEESSS
T ss_pred             EeeeCCCCC-EEEEEcCCCC-EEEeecc
Confidence            99  99998 8999999999 9999753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.8e-31  Score=231.58  Aligned_cols=231  Identities=19%  Similarity=0.324  Sum_probs=194.9

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      .+|...|.+++|  +++.++++    +.|+.|++||+.         +.+.+..+.+|...|.+++|  ++. ++++++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g----~~dg~i~iwd~~---------~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~  191 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSG----LRDNTIKIWDKN---------TLECKRILTGHTGSVLCLQY--DER-VIITGSS  191 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEE----ESSSCEEEEESS---------SCCEEEEECCCSSCEEEEEC--CSS-EEEEEET
T ss_pred             cCCCCcEEEEEE--CCCEEEEE----eCCCeEEEEeCC---------CCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcC
Confidence            456778998887  67777775    799999999998         67788889999999999999  455 4777789


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeecce---eEEEEc
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHAH---VRNVDY  216 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~---v~~~~~  216 (351)
                      ||.|++||+.++.....     ..+|...|.+++|++  ..+++++.|+.|++||++++....  ....+|   +.+++|
T Consensus       192 dg~i~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNT-----LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             TSCEEEEESSSCCEEEE-----ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEE-----EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence            99999999997643322     235677899999974  589999999999999999877653  222244   889998


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                        ++. ++++|+.||.|++||+++ .+.+..+.+|...|.++.|+  + .++++|+.|+.|++||+++            
T Consensus       265 --~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~------------  325 (435)
T 1p22_A          265 --DDK-YIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC------------  325 (435)
T ss_dssp             --ETT-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTT------------
T ss_pred             --CCC-EEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCC------------
Confidence              565 799999999999999998 67889999999999999994  4 8999999999999999998            


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                             ++++..+.+|...|.+++|  ++. +|++++.||.|++||+..
T Consensus       326 -------~~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          326 -------GACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             -------CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHH
T ss_pred             -------CCEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCC
Confidence                   8889999999999999999  556 899999999999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-30  Score=227.50  Aligned_cols=245  Identities=19%  Similarity=0.272  Sum_probs=199.1

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...|..+.+++++..++.|+    .++.|.+|++....   ....+.+|...|.+++++  +..|++    ++.|+.++
T Consensus       146 ~~~~V~sv~fspdg~~lasgs----~Dg~v~iWd~~~~~---~~~~~~~h~~~v~~~s~~--~~~l~s----gs~d~~i~  212 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQK---RLRNMTSHSARVGSLSWN--SYILSS----GSRSGHIH  212 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTE---EEEEECCCSSCEEEEEEE--TTEEEE----EETTSEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEE----CCCeEEEEEcCCCc---EEEEEeCCCCceEEEeeC--CCEEEE----EeCCCcee
Confidence            345678888999999998875    58999999987642   346678999999998885  445555    47999999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|+...        ....+..+.+|...+..+.|+|++.. +++++.|+.+++|+..++....... .....|...|.++
T Consensus       213 ~~d~~~--------~~~~~~~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~-~~~~~~~~~V~~~  282 (420)
T 4gga_A          213 HHDVRV--------AEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVKAV  282 (420)
T ss_dssp             EEETTS--------SSCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCCS-EEECCCSSCEEEE
T ss_pred             Eeeecc--------cceeeEEecccccceeeeeecCCCCe-eeeeeccccceEEeeccccccceee-eeecccCCceeee
Confidence            999873        34567788999999999999999994 6666899999999998754332222 2234567789999


Q ss_pred             EECCCCCcEEE---eecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEee
Q 018697          175 AWDPHDVNAVA---ATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       175 ~~~~~~~~l~~---~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +|+|.+..+++   ++.|+.|++||+++++....+.... +.++.|+|++..++++ |..|+.|++||+++ .+++.++.
T Consensus       283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~  361 (420)
T 4gga_A          283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELK  361 (420)
T ss_dssp             EECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEEC
T ss_pred             eeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEc
Confidence            99998776553   3479999999999998888777444 9999999999854433 34799999999998 67899999


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +|...|++++|+|+| .+|+||+.|++|++||+..
T Consensus       362 gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          362 GHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             CCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSC
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Confidence            999999999999999 9999999999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-31  Score=248.43  Aligned_cols=249  Identities=16%  Similarity=0.297  Sum_probs=200.0

Q ss_pred             cceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC--CCceEEEEeecCCcc
Q 018697           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESY   91 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~~~~~d~   91 (351)
                      .+...+..+.+++++..++.|+    .++.|.+|++..... .....+.+|.+.|.+++|+|+  +..|+++    +.|+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~----s~Dg   77 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASC----SYDG   77 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEE----ETTS
T ss_pred             cCcceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEE----eCCC
Confidence            3456688888999998888874    589999999885433 334667899999999999988  7777775    7899


Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC--CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      .|++||+..       .....+..+..|...|.+++|+|+  +. .+++++.||.|++||+.+........   ..+|..
T Consensus        78 ~I~vwd~~~-------~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~  146 (753)
T 3jro_A           78 KVLIWKEEN-------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPII---IDAHAI  146 (753)
T ss_dssp             CEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEE---EECCSS
T ss_pred             eEEEEECCC-------CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeE---eecCCC
Confidence            999999982       223477788899999999999999  66 47777899999999998753332222   235667


Q ss_pred             ceeeeEECC-------------CCCcEEEeecCCeEEEEEcccCCcC----ceeecce---eEEEEcCCC---CCcEEEE
Q 018697          170 YLSGGAWDP-------------HDVNAVAATCESSVQFWDLRSMGKT----NSIEHAH---VRNVDYDTK---KKHLLVT  226 (351)
Q Consensus       170 ~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~---v~~~~~~~~---~~~~l~~  226 (351)
                      .|.+++|+|             ++..+++++.||.|++||++++...    ..+. .|   |.+++|+|+   +. ++++
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~-~l~s  224 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRS-YLAS  224 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSE-EEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCC-EEEE
Confidence            999999999             5889999999999999999987532    2233 34   999999999   66 8999


Q ss_pred             ecCCCeEEEEecccCCc----ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          227 AADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      ++.||.|++||++....    .+.....|...|++++|+|++ .++++++.||.|++||+...
T Consensus       225 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSS
T ss_pred             EecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCC
Confidence            99999999999987321    233344688999999999999 99999999999999999853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-30  Score=229.02  Aligned_cols=253  Identities=17%  Similarity=0.291  Sum_probs=192.1

Q ss_pred             eeeecCCCCc-ceEEEeeeeeCCCCEEEEEEeCCC-------CCeEEEEeeecCCcceeeeeeCCCCC-ceEEEEeecCC
Q 018697           19 ISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSG-------GTELICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGE   89 (351)
Q Consensus        19 ~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~~~~~   89 (351)
                      +..+.+.++. ..++.+    ..++.|++|++...       ........+.+|...|.+++|+|++. .|++    ++.
T Consensus       131 v~~l~~~p~~~~~lat~----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s----~~~  202 (430)
T 2xyi_A          131 VNRARYMPQNACVIATK----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS----ASD  202 (430)
T ss_dssp             CSEEEEETTEEEEEEEE----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE----ECT
T ss_pred             EEEEEECCCCCcEEEEE----CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE----EeC
Confidence            4445566653 344444    35788999999862       11223355678999999999999988 5555    489


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      |+.|++|++.....  ..........+..|...|.+++|+|++..++++++.|+.|++||+++........  ....|..
T Consensus       203 dg~i~vwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~  278 (430)
T 2xyi_A          203 DHTICLWDINATPK--EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH--TVDAHTA  278 (430)
T ss_dssp             TSCEEEEETTSCCB--GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE--EEECCSS
T ss_pred             CCeEEEEeCCCCCC--CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee--EeecCCC
Confidence            99999999973100  0011223566778999999999999766666777899999999999753211111  1125667


Q ss_pred             ceeeeEECCCCCc-EEEeecCCeEEEEEcccC-CcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC--
Q 018697          170 YLSGGAWDPHDVN-AVAATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--  242 (351)
Q Consensus       170 ~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  242 (351)
                      .|.+++|+|+++. +++++.||.|++||+++. ..+..+. .|   |.+++|+|+++.+|++++.|+.|++||++...  
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            8999999999985 778899999999999984 4555655 34   99999999998789999999999999998632  


Q ss_pred             -----------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          243 -----------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       243 -----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                                 +.+..+.+|...|++++|+|+++.+|++++.|+.|++|++..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                       456667789999999999999944999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.2e-30  Score=225.25  Aligned_cols=244  Identities=14%  Similarity=0.141  Sum_probs=181.1

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc-----ceeEEEecCCCCCcEE
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG-----KINCVLWWSSGRHDKL  137 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~  137 (351)
                      .|...|.+++|||+|+.|+++    +.||.|++|+..           ..+..+. |..     .|.+++|+|+|+. ++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~----s~dg~V~iwd~~-----------~~l~~l~-~~~~~~~~sv~svafSPDG~~-LA  145 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVL----SNNGNVSVFKDN-----------KMLTNLD-SKGNLSSRTYHCFEWNPIESS-IV  145 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEE----ETTSCEEEEETT-----------EEEEECC-CSSCSTTTCEEEEEECSSSSC-EE
T ss_pred             CCCCcEEEEEECCCCCEEEEE----eCCCcEEEEeCC-----------ceeeecc-CCCccccccEEEEEEcCCCCE-EE
Confidence            568899999999999999986    799999999965           2566666 665     4999999999995 77


Q ss_pred             EEecCCcEEEEEcCCCCC------CcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC---ceeec
Q 018697          138 VSIDEENIFLWSLDCSNK------NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEH  208 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~  208 (351)
                      +++.||+|++||+.++..      ....+.....+|...|.+++|+|++  +++++.|+.|++||+..+...   ..+..
T Consensus       146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            778999999999987532      1122222345678899999999998  889999999999999887743   24433


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEe--cCCCCCeEEEeeCCCeEEEEEcC
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      +|   |.+++|+  +. .+++++ +++|++||+.. ++......+|...|..++|  +|++ ..+++++.||+ ++|...
T Consensus       224 ~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          224 ASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred             cccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence            44   9999999  45 788777 69999999986 4432333389999999999  9999 99999999999 999986


Q ss_pred             CCC--CCCCCCccc---ccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          284 TSN--HDELPSESL---VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       284 ~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      ...  ++.......   ...|+ ..+..+..+.+ ...|++++|+|+|+ ++|+++.
T Consensus       297 ~~~~spd~~l~a~~d~~v~lW~-~~g~~l~~~~~-~~~I~~va~SPdG~-~lA~~~~  350 (588)
T 2j04_A          297 ELHVTADNIIAPYLEKKFKKWS-TIWNEFNNYET-TLVIHGISLSPDGY-SIAIVYD  350 (588)
T ss_dssp             SEEEECCCSSHHHHHHHHHHTT-TTTTSSSSSCC-EEEEEEEEECTTSS-EEEEEEE
T ss_pred             cEEECCCceEEEEcCCEEEEEE-CCCCceeeecc-ceEEEEEEECCCCC-EEEEEEe
Confidence            311  000000000   01111 12233444444 66799999999998 7888763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.1e-29  Score=218.78  Aligned_cols=261  Identities=11%  Similarity=0.075  Sum_probs=196.5

Q ss_pred             EEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee-----eeec
Q 018697           44 VHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-----ALDA  118 (351)
Q Consensus        44 i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~~  118 (351)
                      +.++.++.....+...........+.+++|+| +..++++   ++.++.|++||+.         ..+...     .+.+
T Consensus       101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~---~~~~~~i~~~d~~---------~g~~~~~~~~~~~~~  167 (433)
T 3bws_A          101 EKLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIP---LLEDEGMDVLDIN---------SGQTVRLSPPEKYKK  167 (433)
T ss_dssp             TCEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEE---BTTSSSEEEEETT---------TCCEEEECCCHHHHT
T ss_pred             eEEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEE---eCCCCeEEEEECC---------CCeEeeecCcccccc
Confidence            35566665443333333333455677999999 5555555   4788899999987         444444     4457


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~  197 (351)
                      |...|.+++|+|++. ++++++.|+.|++||+.++.....+.     .|...+.+++|+|+++.+++++ .++.|++||+
T Consensus       168 ~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          168 KLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             TCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence            889999999999887 35666789999999998654333222     3455899999999999886655 7999999999


Q ss_pred             ccCCcCceeecce-eEEEEcCCCCCcEEEEec--------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA--------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                      ++++....+.... +.+++|+|+++ .+++++        .|+.|++||+++ .+.+..+ .|...+.+++|+|+++.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~  318 (433)
T 3bws_A          242 KTKLEIRKTDKIGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIY  318 (433)
T ss_dssp             TTTEEEEECCCCSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred             CCCcEEEEecCCCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEE
Confidence            9887776666433 99999999998 566665        588999999986 5455444 4566889999999994566


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee-------------
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY-------------  335 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------------  335 (351)
                      ++++.|+.|++||+..                   ++.+..+. +...+.+++|+|+++ ++++++.             
T Consensus       319 ~~~~~~~~v~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          319 VSDMCCSKIEVYDLKE-------------------KKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             EEETTTTEEEEEETTT-------------------TEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCC
T ss_pred             EEecCCCEEEEEECCC-------------------CcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCcccccccccc
Confidence            7779999999999997                   67666664 566799999999998 5666654             


Q ss_pred             --CCeEEEeecCcc
Q 018697          336 --DGRVVVESVKPF  347 (351)
Q Consensus       336 --dg~v~vw~~~~~  347 (351)
                        ||.|++||+.+.
T Consensus       378 ~~dg~v~~~d~~~~  391 (433)
T 3bws_A          378 LVLGKVYVIDTTTD  391 (433)
T ss_dssp             SSCCEEEEEETTTT
T ss_pred             ccceEEEEEECCCC
Confidence              579999998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=6e-30  Score=211.64  Aligned_cols=251  Identities=13%  Similarity=0.098  Sum_probs=166.5

Q ss_pred             eeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCC----CCeEEEEeeecCCcceeeeeeCCCCCceEEEE
Q 018697            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----GTELICEGLFSHPNEIWDLSSCPFDQRIFSTV   84 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~   84 (351)
                      +|.+.+...++..+.+.|+...+++-....-+-+.++.+.++++    +..+..   .+|...|+++   +++ .++.+.
T Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s---~g~~~~v~~l---~~g-~lv~ss  151 (356)
T 2w18_A           79 LYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK---SGNIKAVLGL---TKR-RLVSSS  151 (356)
T ss_dssp             EEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE---EEEEEEEEEE---TTT-EEEEEE
T ss_pred             eEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe---CCCeEEEEec---CCC-cEEEec
Confidence            44555544455555555555555544443344455666666665    322222   2344555554   333 333331


Q ss_pred             eecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecC---CCCCcEEEEecCCcEEEEEcCCCCCCccccc
Q 018697           85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQS  161 (351)
Q Consensus        85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~  161 (351)
                       ..+.|+.|++|++..        .++.+..+..|...+..++|++   ++. ++++++.|++|+|||+.+++....+..
T Consensus       152 -~~g~d~~V~~~~~s~--------dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g  221 (356)
T 2w18_A          152 -GTLSDQQVEVMTFAE--------DGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHI  221 (356)
T ss_dssp             -SSSTTCEEEEEEECT--------TSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -ccCCCCcEEEEEECC--------CCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcC
Confidence             124699999999962        5677788889999999999999   445 355558999999999998765544432


Q ss_pred             ccccCcccceeeeEECCCCCcE------------EEeecCCeEEEEEcccCCcCcee----ecce---eEEEEcCCCCCc
Q 018697          162 KQSSGMLHYLSGGAWDPHDVNA------------VAATCESSVQFWDLRSMGKTNSI----EHAH---VRNVDYDTKKKH  222 (351)
Q Consensus       162 ~~~~~~~~~v~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~----~~~~---v~~~~~~~~~~~  222 (351)
                      ..  .+...+.+++|+|++..+            ++++.|++|++||..+++.+..+    ..+|   +.+..+  ++. 
T Consensus       222 ~~--~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~-  296 (356)
T 2w18_A          222 DD--SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDH-  296 (356)
T ss_dssp             CC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETT-
T ss_pred             CC--cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCC-
Confidence            11  123467788999999876            45678999999999988765543    2244   333333  355 


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEeeCCCCcee-EEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      ++++++.|++|+|||+++ ++.+.++.+|...+. .++|+|+| .+|++|+.|++|+|||+.
T Consensus       297 ~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence            799999999999999998 778999999987665 58999999 999999999999999963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.1e-29  Score=217.76  Aligned_cols=229  Identities=17%  Similarity=0.120  Sum_probs=164.8

Q ss_pred             CCCCEEEEEEeCCCCCe--EEEEeeecCCcceeeeeeCC--------CCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018697           39 KEENEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCP--------FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~--------~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (351)
                      ..++.|++|+.......  .....+.+|.+.|++++|+|        +++.|+++    +.|++|+|||+.         
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~----s~D~tv~~Wd~~---------  174 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV----GDDCTLIIWRLT---------  174 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE----ETTSEEEEEEEE---------
T ss_pred             eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE----ECCCeEEEEECC---------
Confidence            46899999998865322  12234678999999999998        66677664    799999999998         


Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc--------------------ccccCcc
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--------------------KQSSGML  168 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------------------~~~~~~~  168 (351)
                      ...++..+..|..+|.+++|+|++..++++++.|++|++||+.++........                    ....+|.
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            55667777789999999999999876577779999999999987643322111                    1123566


Q ss_pred             cceeeeEEC-CCCCcEEEeecCCeEEEEEcccCCcCceeecce--e-------------------EEEEcCCCCCcEEEE
Q 018697          169 HYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--V-------------------RNVDYDTKKKHLLVT  226 (351)
Q Consensus       169 ~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v-------------------~~~~~~~~~~~~l~~  226 (351)
                      ..+.++.|. |+++.+++++.|+.+++||+..++....+....  +                   ..+.+.+.+..++++
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence            788889886 789999999999999999998776544433111  1                   222233334446778


Q ss_pred             ecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcC
Q 018697          227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      |+.||.|++||+.+ +++...+..|..+|.+++|+|+| ++||+++.+| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEEe
Confidence            89999999999987 56677777899999999999999 9999998776 5566553

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.6e-27  Score=200.24  Aligned_cols=245  Identities=19%  Similarity=0.270  Sum_probs=194.2

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...+..+.++++...++.|+    .++.|++|++....   ....+.+|...+.++.+.  +..++++    +.++.++
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs----~Dg~v~iw~~~~~~---~~~~~~~h~~~~~~~~~~--~~~l~s~----~~~~~~~  132 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQK---RLRNMTSHSARVGSLSWN--SYILSSG----SRSGHIH  132 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEE--TTEEEEE----ETTSEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEE----CCCcEEEeecCCce---eEEEecCccceEEEeecC--CCEEEEE----ecCCceE
Confidence            344577788888888888775    68999999987642   345677899988876654  4556553    7899999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|+...        ....+..+.+|...+.++.+++++.. +++++.|+.|++||+.++....... .....+...+.++
T Consensus       133 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~  202 (318)
T 4ggc_A          133 HHDVRV--------AEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVKAV  202 (318)
T ss_dssp             EEETTS--------SSCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCCS-EEECCCCSCEEEE
T ss_pred             eeecCC--------CceeEEEEcCccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCcccccce-eeecccCCceEEE
Confidence            999873        34667788899999999999999984 6677899999999998754433222 2233456689999


Q ss_pred             EECCCCCcEE---EeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE-ecCCCeEEEEecccCCcceeEee
Q 018697          175 AWDPHDVNAV---AATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       175 ~~~~~~~~l~---~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +++|++..++   +++.++.|++||.+............ +..+.|+|++..++++ |+.|+.|++||+++ .+++.++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~  281 (318)
T 4ggc_A          203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELK  281 (318)
T ss_dssp             EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEEC
T ss_pred             EecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-CcEEEEEc
Confidence            9999887654   34578999999999877666655444 9999999999854433 45899999999998 77899999


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +|...|++++|+|++ .+|+||+.|++|+|||+..
T Consensus       282 gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          282 GHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSC
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Confidence            999999999999999 9999999999999999976

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=9.4e-28  Score=209.10  Aligned_cols=226  Identities=13%  Similarity=0.104  Sum_probs=179.6

Q ss_pred             ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018697           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~  158 (351)
                      +++++   ++.|+.|++||+.         ..+.+..+..|. .+.+++|+|+++.++++++.|+.|++||+.+++....
T Consensus         3 ~l~vs---~~~d~~v~v~d~~---------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~   69 (391)
T 1l0q_A            3 FAYIA---NSESDNISVIDVT---------SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT   69 (391)
T ss_dssp             EEEEE---ETTTTEEEEEETT---------TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEEEE---cCCCCEEEEEECC---------CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE
Confidence            34444   5889999999998         667777787665 5899999999996445667899999999986543332


Q ss_pred             cccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                      +..      ...+.+++|+|+++.|++++ .++.|++||+.+++....+.... +.+++|+|+++.++++++.++.|++|
T Consensus        70 ~~~------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           70 VPA------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             EEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEC------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            221      12799999999999887655 67999999999988777776444 99999999998655889999999999


Q ss_pred             ecccCCcceeEeeCCCCceeEEEecCCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc
Q 018697          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (351)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      |+++ .+.+..+..+ ..+..++|+|++ .++ ++++.|+.|++||++.                   ++.+..+. +..
T Consensus       144 d~~~-~~~~~~~~~~-~~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~-------------------~~~~~~~~-~~~  200 (391)
T 1l0q_A          144 NTVT-KAVINTVSVG-RSPKGIAVTPDG-TKVYVANFDSMSISVIDTVT-------------------NSVIDTVK-VEA  200 (391)
T ss_dssp             ETTT-TEEEEEEECC-SSEEEEEECTTS-SEEEEEETTTTEEEEEETTT-------------------TEEEEEEE-CSS
T ss_pred             ECCC-CcEEEEEecC-CCcceEEECCCC-CEEEEEeCCCCEEEEEECCC-------------------CeEEEEEe-cCC
Confidence            9987 6667777655 456999999999 555 7888899999999998                   66666664 445


Q ss_pred             eEEEEEeCCCCCceEEEee---eCCeEEEeecCcc
Q 018697          316 SVYGLAWSSREPWIFASLS---YDGRVVVESVKPF  347 (351)
Q Consensus       316 ~v~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~~  347 (351)
                      .+.+++|+|+++ .+++++   .++.|++||+...
T Consensus       201 ~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          201 APSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTT
T ss_pred             CccceEECCCCC-EEEEEecCcCCCcEEEEECCCC
Confidence            789999999998 566665   6899999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=7.4e-27  Score=200.20  Aligned_cols=291  Identities=13%  Similarity=0.098  Sum_probs=202.0

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (351)
                      +++++|++....+..+++|.++...+.+.......+...+..++|+|+++ |+++.. .+.++.|.+|++..       .
T Consensus         3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~-~~~~~~v~~~~~~~-------g   73 (347)
T 3hfq_A            3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDK-EDDEGGIAAWQIDG-------Q   73 (347)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEE-ETTEEEEEEEEEET-------T
T ss_pred             cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEe-cCCCceEEEEEecC-------C
Confidence            57889988877788999999998877776655666778888999999998 666531 13478999999962       2


Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC-------cccceeeeEECCCCC
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-------MLHYLSGGAWDPHDV  181 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~  181 (351)
                      ..+.+..+..+...+..++|+|+++.+++++..++.|.+|++........+......+       ....+.+++|+|+++
T Consensus        74 ~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A           74 TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred             cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence            3345556566778899999999999634343478999999997433222221111111       122477899999999


Q ss_pred             cEEEeecCCeEEEEEcc-cCCcCce--ee--cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC-Cc--ceeEeeCCC
Q 018697          182 NAVAATCESSVQFWDLR-SMGKTNS--IE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KA--PIQELPGHT  252 (351)
Q Consensus       182 ~l~~~~~d~~i~iwd~~-~~~~~~~--~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~--~~~~~~~~~  252 (351)
                      .+++...++.|.+||+. +++....  +.  .+. +..++|+|+|+++++++..++.|.+|++... ++  .+..+....
T Consensus       154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  233 (347)
T 3hfq_A          154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP  233 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence            44444568899999998 4432211  11  122 7889999999966666778899999998742 22  122333222


Q ss_pred             ------CceeEEEecCCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCC
Q 018697          253 ------HWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       253 ------~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                            ..+..++|+|+| ++| ++...++.|.+|++....                ....+..+..+...+.+++|+|+
T Consensus       234 ~~~~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~spd  296 (347)
T 3hfq_A          234 ADYTAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADG----------------HLTLIQQISTEGDFPRDFDLDPT  296 (347)
T ss_dssp             TTCCSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGG----------------CEEEEEEEECSSSCCCEEEECTT
T ss_pred             CCCCCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCC----------------cEEEeEEEecCCCCcCeEEECCC
Confidence                  458889999999 655 666678999999997400                03445555555666889999999


Q ss_pred             CCceEEEeeeCCeEEEeecC
Q 018697          326 EPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |++++++...++.|.+|+++
T Consensus       297 g~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          297 EAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEcCCCcEEEEEEe
Confidence            99444444456999999664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.1e-27  Score=205.75  Aligned_cols=276  Identities=11%  Similarity=0.061  Sum_probs=196.5

Q ss_pred             CCcceEE-EeeeeeCCCC----EEEEEEe--CCCCCeEEEEeeecCCcceeeeeeCC--------------CCCceEEEE
Q 018697           26 TDHTSFL-TGTLSLKEEN----EVHLLRL--SSGGTELICEGLFSHPNEIWDLSSCP--------------FDQRIFSTV   84 (351)
Q Consensus        26 ~~~~~~~-~g~~~~~~~~----~i~~~~~--~~~~~~~~~~~~~~h~~~v~~i~~~~--------------~~~~l~~~~   84 (351)
                      +.+..++ .|......++    .+++|++  ... ..+....+.+|...+..+++++              .+..++.+.
T Consensus        72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s  150 (415)
T 2hqs_A           72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVV  150 (415)
T ss_dssp             TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEE
T ss_pred             hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEE
Confidence            3344444 6766555667    7888988  543 3444466788999999888875              255666654


Q ss_pred             eecCCc---ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC---CcEEEEEcCCCCCCcc
Q 018697           85 FSTGES---YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE---ENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        85 ~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~  158 (351)
                      ... .+   +.|++||+.         . .....+..|...+.+++|+|+|+. ++.++.+   ..|++||+.++... .
T Consensus       151 ~~~-~~~~~~~i~i~d~~---------g-~~~~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~  217 (415)
T 2hqs_A          151 QTN-GGQFPYELRVSDYD---------G-YNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVR-Q  217 (415)
T ss_dssp             ECS-SSSCCEEEEEEETT---------S-CSCEEEEEESSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred             ecC-CCCccceEEEEcCC---------C-CCCEEEeCCCCcceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-E
Confidence            221 23   799999986         2 345677789999999999999995 4555555   49999999875432 2


Q ss_pred             cccccccCcccceeeeEECCCCCcEE-EeecCC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecC-CC--
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVNAV-AATCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD-ES--  231 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~-dg--  231 (351)
                      +     ..+...+.+++|+|+++.|+ +++.++  .|++||+++++......... +.+++|+|+|+ .|++++. ++  
T Consensus       218 l-----~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~  291 (415)
T 2hqs_A          218 V-----ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRP  291 (415)
T ss_dssp             E-----ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSC
T ss_pred             e-----ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCC-EEEEEECCCCCc
Confidence            1     12344789999999999888 455444  59999998876532222222 89999999998 4555554 55  


Q ss_pred             eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC---CeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       232 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                      .|++||+.. + ....+..+...+..++|+|+| .+|+.++.+   ..|.+||+..                   ++. .
T Consensus       292 ~i~~~d~~~-~-~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~-------------------~~~-~  348 (415)
T 2hqs_A          292 QVYKVNING-G-APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-Q  348 (415)
T ss_dssp             EEEEEETTS-S-CCEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTT-------------------CCE-E
T ss_pred             EEEEEECCC-C-CEEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCC-------------------CCE-E
Confidence            677778875 3 345566677889999999999 888777764   5899999987                   444 3


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCC---eEEEeecCc
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDG---RVVVESVKP  346 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~  346 (351)
                      .+..+. .+.+++|+|+|+ .|++++.++   .|++|++..
T Consensus       349 ~l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          349 VLSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             ECCCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTS
T ss_pred             EecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCC
Confidence            444554 789999999999 677776666   799999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=2.1e-26  Score=196.68  Aligned_cols=277  Identities=12%  Similarity=0.138  Sum_probs=188.8

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      ..++.|.+|++... +.........|...+.+++|+|+++.|+++.   ..++.|.+|++...     ....+.+..+..
T Consensus        12 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~---~~~~~v~~~~~~~~-----~~~~~~~~~~~~   82 (343)
T 1ri6_A           12 PESQQIHVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGV---RPEFRVLAYRIAPD-----DGALTFAAESAL   82 (343)
T ss_dssp             GGGTEEEEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEE---TTTTEEEEEEECTT-----TCCEEEEEEEEC
T ss_pred             CCCCeEEEEEECCC-CcEEEeeeEecCCCCceEEECCCCCEEEEee---cCCCeEEEEEecCC-----CCceeecccccc
Confidence            35789999999763 3333344456888999999999999888873   44589999998621     113344455544


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~  197 (351)
                      +. .+..++|+|+++.+++++..++.|.+||+..+. ........  .....+.+++|+|+++.+++++ .++.|.+||+
T Consensus        83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            44 789999999999644444558899999995221 11111111  1122588999999999888887 8999999999


Q ss_pred             cc-CCcCc----eee--cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC-Ccc--eeEeeC----C--CCceeEEEe
Q 018697          198 RS-MGKTN----SIE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAP--IQELPG----H--THWTWAVCC  260 (351)
Q Consensus       198 ~~-~~~~~----~~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~----~--~~~v~~~~~  260 (351)
                      .+ ++...    .+.  .+. +..++|+|+++++++++..++.|.+||++.. +..  ...+..    +  ...+..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 54322    112  122 8899999999966666778999999999632 211  222221    1  235668999


Q ss_pred             cCCCCCeEE-EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018697          261 NPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (351)
Q Consensus       261 ~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  339 (351)
                      +|++ .+|+ ++..++.|.+||+.....               ..+.+..+..+.. +.+++|+|+++++++++..++.|
T Consensus       239 s~dg-~~l~v~~~~~~~i~v~d~~~~~~---------------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          239 TPDG-RHLYACDRTASLITVFSVSEDGS---------------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             CTTS-SEEEEEETTTTEEEEEEECTTSC---------------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred             CCCC-CEEEEEecCCCEEEEEEEcCCCC---------------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence            9999 6555 666799999999983100               0344444544444 88999999999444444478999


Q ss_pred             EEeecC
Q 018697          340 VVESVK  345 (351)
Q Consensus       340 ~vw~~~  345 (351)
                      .+|+++
T Consensus       302 ~v~~~d  307 (343)
T 1ri6_A          302 SVYEIV  307 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.95  E-value=5.2e-25  Score=189.76  Aligned_cols=295  Identities=7%  Similarity=0.041  Sum_probs=198.1

Q ss_pred             CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018697           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (351)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (351)
                      .+....+++|+++.+.++.|++|.++...+.+...... +...+..++|+|+++.|+++...+..++.|.+|++...   
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~---   85 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE---   85 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT---
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC---
Confidence            34567889999988888999999999877666555544 77888999999999988887411113479999998721   


Q ss_pred             CCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-c--------cCcccceeeeE
Q 018697          105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-S--------SGMLHYLSGGA  175 (351)
Q Consensus       105 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~--------~~~~~~v~~~~  175 (351)
                        ....+.+.....+......+++  +++.++++...++.|.+|++............. .        ..+...+.+++
T Consensus        86 --~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           86 --KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             --TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             --CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence              0123444455555666777887  777544444568999999998544332221100 0        01122357899


Q ss_pred             ECCCCCcEEEee-cCCeEEEEEcccCCc------Cc------eee--cce-eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          176 WDPHDVNAVAAT-CESSVQFWDLRSMGK------TN------SIE--HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       176 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~------~~------~~~--~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      |+|+++++++++ .++.|.+|++.....      +.      ...  ... +..++|+|++++++++...++.|.+||+.
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~  241 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA  241 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec
Confidence            999999877765 578999999886442      11      111  122 88999999999555555578999999998


Q ss_pred             cCCcc--eeEee---CCCCceeEEEecCCCCCeEEEeeC--CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          240 MLKAP--IQELP---GHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       240 ~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      . +..  +..+.   .+......++|+|+| ++|+++..  ++.|.+|++.....               ....+..+..
T Consensus       242 ~-g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g---------------~~~~~~~~~~  304 (361)
T 3scy_A          242 D-GMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNG---------------TLTKVGYQLT  304 (361)
T ss_dssp             T-TEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTC---------------CEEEEEEEEC
T ss_pred             C-CceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCC---------------cEEEeeEecC
Confidence            5 432  22232   233456899999999 77765554  58999999963100               0223334433


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                       ...+.+++|+|+|++++++...++.|.+|+++
T Consensus       305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             -SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             -CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             44678999999999444444478999998765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=8.3e-25  Score=197.51  Aligned_cols=285  Identities=13%  Similarity=0.099  Sum_probs=211.7

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCC----CCCceEEEEeecCCcceEEEE
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP----FDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~----~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      .+.+++++..++++.    .++.|.+|+++....... ..+. +...+..++|+|    ++++++++.   ..+++|.+|
T Consensus       183 ~v~~spdg~~l~v~~----~d~~V~v~D~~~~t~~~~-~~i~-~g~~p~~va~sp~~~~dg~~l~v~~---~~~~~v~v~  253 (543)
T 1nir_A          183 ISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKV-AEIK-IGIEARSVESSKFKGYEDRYTIAGA---YWPPQFAIM  253 (543)
T ss_dssp             EEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEE-EEEE-CCSEEEEEEECCSTTCTTTEEEEEE---EESSEEEEE
T ss_pred             eEEECCCCCEEEEEC----CCCeEEEEECcCCCCcEE-EEEe-cCCCcceEEeCCCcCCCCCEEEEEE---ccCCeEEEE
Confidence            455788888888875    359999999964333332 3333 566789999999    999998873   357899999


Q ss_pred             EcccccCCCCCCcceeeeeeec----------cc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           97 QIPELYGQLNSPQLERIAALDA----------HV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      |..         +++++..+..          |. ..+.++.++|++..++++...++.|.+||+.+.........    
T Consensus       254 D~~---------t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i----  320 (543)
T 1nir_A          254 DGE---------TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI----  320 (543)
T ss_dssp             ETT---------TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE----
T ss_pred             ecc---------ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe----
Confidence            987         5666666654          22 37889999999986555557789999999986543321111    


Q ss_pred             CcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecc---e---eEEEEcCCCCCcEEEEec-CCCeEEEEe
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA---H---VRNVDYDTKKKHLLVTAA-DESGIHLWD  237 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---~---v~~~~~~~~~~~~l~~~~-~dg~i~i~d  237 (351)
                      .+...+.++.|+|+++++++++ .+++|.+||+.+++....+..+   |   ...+ ++|++..+++++. .|++|.+||
T Consensus       321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence            1233678899999999887765 5899999999999887776632   3   2222 4677444777775 689999999


Q ss_pred             cccC------CcceeEeeCCCCceeEEEecCCCCCeEEEee-------CCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          238 LRML------KAPIQELPGHTHWTWAVCCNPEYDGFILSAG-------TDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       238 ~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      +...      .+.++++..|...+..++++|++ ++|++++       .+++|.+||+.+                   .
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~-------------------~  459 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKN-------------------L  459 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTC-------------------T
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCC-------------------C
Confidence            9862      45788999999899999999999 8898887       267999999998                   4


Q ss_pred             ccc-eee--------ccccceEEEEEeCCCCCceEEEee----eCCeEEEeecCccc
Q 018697          305 SLL-NSY--------SDYEDSVYGLAWSSREPWIFASLS----YDGRVVVESVKPFL  348 (351)
Q Consensus       305 ~~~-~~~--------~~~~~~v~~~~~~~~~~~~l~s~~----~dg~v~vw~~~~~~  348 (351)
                      +.. ..+        ..+...+..+.|+|+|+.++++..    .|+.|.|||..+..
T Consensus       460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence            444 222        345678999999999996555542    47999999988654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=8.5e-25  Score=186.04  Aligned_cols=274  Identities=9%  Similarity=0.039  Sum_probs=189.1

Q ss_pred             CCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCC
Q 018697           25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ  104 (351)
Q Consensus        25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~  104 (351)
                      .++..++++..   ..++.|.+|+.....  +. ..+..+...+ .++|+|+++.++++.   ..++.|.+||+.     
T Consensus         6 ~~~~~~~~v~~---~~~~~v~~~d~~~~~--~~-~~~~~~~~~~-~~~~s~dg~~l~~~~---~~~~~i~~~d~~-----   70 (331)
T 3u4y_A            6 QTTSNFGIVVE---QHLRRISFFSTDTLE--IL-NQITLGYDFV-DTAITSDCSNVVVTS---DFCQTLVQIETQ-----   70 (331)
T ss_dssp             -CCCCEEEEEE---GGGTEEEEEETTTCC--EE-EEEECCCCEE-EEEECSSSCEEEEEE---STTCEEEEEECS-----
T ss_pred             cCCCCEEEEEe---cCCCeEEEEeCcccc--ee-eeEEccCCcc-eEEEcCCCCEEEEEe---CCCCeEEEEECC-----
Confidence            34445544432   356889988876532  22 3333445566 999999999888763   567899999987     


Q ss_pred             CCCCccee-eeeeeccccceeEEEecCCCCCcEEEEecC-C--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCC
Q 018697          105 LNSPQLER-IAALDAHVGKINCVLWWSSGRHDKLVSIDE-E--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD  180 (351)
Q Consensus       105 ~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  180 (351)
                          ..+. ...+..+..+..+++|+|+++. ++++..+ +  .|.+||+.++.....+..      .....+++|+|++
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~spdg  139 (331)
T 3u4y_A           71 ----LEPPKVVAIQEGQSSMADVDITPDDQF-AVTVTGLNHPFNMQSYSFLKNKFISTIPI------PYDAVGIAISPNG  139 (331)
T ss_dssp             ----SSSCEEEEEEECSSCCCCEEECTTSSE-EEECCCSSSSCEEEEEETTTTEEEEEEEC------CTTEEEEEECTTS
T ss_pred             ----CCceeEEecccCCCCccceEECCCCCE-EEEecCCCCcccEEEEECCCCCeEEEEEC------CCCccceEECCCC
Confidence                3444 5666667666666999999995 4444433 3  899999986543322211      1256899999999


Q ss_pred             CcEEEee-cCCe-EEEEEcccCCcCc-----eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEee
Q 018697          181 VNAVAAT-CESS-VQFWDLRSMGKTN-----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELP  249 (351)
Q Consensus       181 ~~l~~~~-~d~~-i~iwd~~~~~~~~-----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~  249 (351)
                      +++++++ .++. |.+|++.....+.     .+..+. +..++|+|+++++++++..++.|++||+++ .+.   +..+.
T Consensus       140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~  218 (331)
T 3u4y_A          140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVG  218 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEE
T ss_pred             CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-Ccccceeeecc
Confidence            9877765 4577 9999987544321     122222 899999999986677777899999999986 555   66666


Q ss_pred             CCCCceeEEEecCCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc--ceeeccc----cc---eEEE
Q 018697          250 GHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDY----ED---SVYG  319 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~---~v~~  319 (351)
                      . ...+..++|+|+| +++ ++...++.|.+||..+                   ++.  +..+..+    ..   ....
T Consensus       219 ~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
T 3u4y_A          219 T-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLS-------------------GTLSFVKSFGHGLLIDPRPLFGANQ  277 (331)
T ss_dssp             C-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTT-------------------TEEEEEEEEECCCCCCCGGGTTCCC
T ss_pred             C-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCC-------------------CceeeecccccccccCCCCcccccc
Confidence            4 4667899999999 655 4555688999999987                   333  2222111    11   2356


Q ss_pred             EEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          320 LAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++|+|+++.+++++..++.|.+|++..
T Consensus       278 ~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          278 MALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             eEECCCCCEEEEecCCCCcEEEEEecC
Confidence            899999995556666788999999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.5e-25  Score=192.40  Aligned_cols=254  Identities=12%  Similarity=0.088  Sum_probs=183.3

Q ss_pred             cceEEEeeeeeCCC--CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018697           28 HTSFLTGTLSLKEE--NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (351)
Q Consensus        28 ~~~~~~g~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (351)
                      ..+++........+  +.|++|++....    ...+.+|...|.+++|+|+++.|+++... +.+..|++||+.      
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----~~~l~~~~~~v~~~~~Spdg~~la~~s~~-~~~~~i~~~d~~------  211 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLA------  211 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----CEEEEEESSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETT------
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----CEEEeCCCCcceeeEEcCCCCEEEEEEec-CCCcEEEEEECC------
Confidence            44566554332221  688888886432    24556799999999999999999887311 112489999997      


Q ss_pred             CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcE
Q 018697          106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA  183 (351)
Q Consensus       106 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  183 (351)
                         +.+. ..+..|...+.+++|+|+|+.++++++.++  .|++||+.++.. ..+     ..|...+.+++|+|+++.|
T Consensus       212 ---tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l-----~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          212 ---NGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV-----TDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             ---TCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC-----CCCSSCEEEEEECTTSSEE
T ss_pred             ---CCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC-----cCCCCcccceEECCCCCEE
Confidence               3343 356678889999999999996444555554  499999986432 111     2344578999999999999


Q ss_pred             EEeec-CC--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCC---CeEEEEecccCCcceeEeeCCCCcee
Q 018697          184 VAATC-ES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPGHTHWTW  256 (351)
Q Consensus       184 ~~~~~-d~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~  256 (351)
                      ++++. ++  .|++||+.+++......... +.+++|+|+|+ +|++++.+   ..|++||+.+ ++ ...+..+. .+.
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~-~~-~~~l~~~~-~~~  357 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLAT-GG-VQVLSSTF-LDE  357 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTT-CC-EEECCCSS-SCE
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCC-CC-EEEecCCC-CcC
Confidence            88875 44  68888988776432222233 88999999999 45555543   5899999986 43 35565554 899


Q ss_pred             EEEecCCCCCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          257 AVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                      +++|+|+| .+|++++.++   .|.+||+..                    .....+..|...|.+++|+|...
T Consensus       358 ~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g--------------------~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          358 TPSLAPNG-TMVIYSSSQGMGSVLNLVSTDG--------------------RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEECTTS-SEEEEEEEETTEEEEEEEETTS--------------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred             CeEEcCCC-CEEEEEEcCCCccEEEEEECCC--------------------CcEEEeeCCCCCCcCCccccccc
Confidence            99999999 8888877766   799999864                    55677888999999999999643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.5e-25  Score=185.74  Aligned_cols=253  Identities=10%  Similarity=0.119  Sum_probs=180.1

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCc-ceeeeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALD  117 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~  117 (351)
                      ..++.|++|++....    ...+..|...|.+++|+|+++.|+++     .++.|.+||+.         . .+......
T Consensus        19 ~~~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~-----~~~~i~~~d~~---------~~~~~~~~~~   80 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDGKYLLLN-----SEGLLYRLSLA---------GDPSPEKVDT   80 (297)
T ss_dssp             CCCEEEEEEETTTTE----EEEEEEESSCCEEEEECTTSSEEEEE-----ETTEEEEEESS---------SCCSCEECCC
T ss_pred             CcceeEEEEeCCCCc----eeeeccCCcceEeeEECCCCCEEEEE-----cCCeEEEEeCC---------CCCCceEecc
Confidence            356788888876532    23456689999999999999988875     47799999987         3 44444444


Q ss_pred             cc-ccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEE-EeecCCeEE
Q 018697          118 AH-VGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQ  193 (351)
Q Consensus       118 ~h-~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~  193 (351)
                      .| ...+.+++|+|+++. +++++  .++...||.++........+..     ...+..++|+|+++.|+ ++..++.++
T Consensus        81 ~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           81 GFATICNNDHGISPDGAL-YAISDKVEFGKSAIYLLPSTGGTPRLMTK-----NLPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             TTCCCBCSCCEECTTSSE-EEEEECTTTSSCEEEEEETTCCCCEECCS-----SSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ccccccccceEECCCCCE-EEEEEeCCCCcceEEEEECCCCceEEeec-----CCCccceEECCCCCEEEEEECCCCceE
Confidence            55 477899999999995 44444  3345555555422222222211     12488899999999887 667899999


Q ss_pred             EEEcccC-CcCceeec-ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          194 FWDLRSM-GKTNSIEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       194 iwd~~~~-~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +|+++.. .....+.. .. +.+++|+|+++.+++++..++.+++|+++.....+..+..|...+..++|+|++ .+|+.
T Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~  233 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVF  233 (297)
T ss_dssp             EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEE
T ss_pred             EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEE
Confidence            9997532 22222221 22 999999999995555555689999999874455677788888889999999999 88877


Q ss_pred             eeCC-----------CeEEEEEcCCCCCCCCCCcccccCCccccccc--ceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          271 AGTD-----------STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       271 ~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      ++.+           +.|.+||+..                   ++.  +..+..|...+..++|+|+++ .|++++.|
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~  292 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDG-------------------GNVETLFDLFGGQGTMNSPNWSPDGD-EFAYVRYF  292 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTS-------------------CSCEEEEEEEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred             EEcCCCCCcccccCceEEEEEecCC-------------------CCceeeeccCCCCcccccceECCCCC-EEEEEEec
Confidence            7765           5699999987                   433  444457777899999999999 56666654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3.2e-24  Score=193.72  Aligned_cols=286  Identities=10%  Similarity=0.067  Sum_probs=203.9

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeee-cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc--cc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI--PE  100 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~--~~  100 (351)
                      ++++.. +++.   ...++.+.+|+....  .+. ..+. ++.  ++.++|+|++++|+++    +.|+.|++||+  . 
T Consensus       145 ~~p~~~-~~vs---~~~d~~V~v~D~~t~--~~~-~~i~~g~~--~~~v~~spdg~~l~v~----~~d~~V~v~D~~~~-  210 (543)
T 1nir_A          145 LDLPNL-FSVT---LRDAGQIALVDGDSK--KIV-KVIDTGYA--VHISRMSASGRYLLVI----GRDARIDMIDLWAK-  210 (543)
T ss_dssp             CCGGGE-EEEE---EGGGTEEEEEETTTC--CEE-EEEECSTT--EEEEEECTTSCEEEEE----ETTSEEEEEETTSS-
T ss_pred             cCCCCE-EEEE---EcCCCeEEEEECCCc--eEE-EEEecCcc--cceEEECCCCCEEEEE----CCCCeEEEEECcCC-
Confidence            455553 3333   235688999876543  232 3444 343  8999999999999987    56799999999  5 


Q ss_pred             ccCCCCCCcceeeeeeeccccceeEEEecC----CCCCcEEEEecCCcEEEEEcCCCCCCccccccccc-----Cc-ccc
Q 018697          101 LYGQLNSPQLERIAALDAHVGKINCVLWWS----SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-----GM-LHY  170 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~~-~~~  170 (351)
                              +.+.+.++. +...+..++|+|    +++.+++++..+++|.+||..+.+....+......     -| ...
T Consensus       211 --------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          211 --------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             --------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             --------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence                    567777776 455679999999    99964444456899999999876544333221100     01 126


Q ss_pred             eeeeEECCCCCcEEE-eecCCeEEEEEcccCCcCc--eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee
Q 018697          171 LSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       171 v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                      +.++.++|+++.+++ ...++.|.+||+.+.+.+.  .+..+. +..++|+|+++++++++..+++|.+||..+ ++.+.
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~  360 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSA  360 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEE
Confidence            889999998876655 4578999999998876554  343333 889999999996666777789999999997 66777


Q ss_pred             EeeC----CCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          247 ELPG----HTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       247 ~~~~----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      .+..    |......+ ++|++..+++++. .|++|.+||+......+            ..++++.++..|...+..++
T Consensus       361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~------------~~~~~v~~l~~~g~~~~~v~  427 (543)
T 1nir_A          361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ------------YAWKKVAELQGQGGGSLFIK  427 (543)
T ss_dssp             EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT------------TBTSEEEEEECSCSCCCCEE
T ss_pred             eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch------------hcCeEEEEEEcCCCCceEEE
Confidence            7764    54433333 4777437778776 68999999998621110            11678889999988889999


Q ss_pred             eCCCCCceEEEee-------eCCeEEEeecCcc
Q 018697          322 WSSREPWIFASLS-------YDGRVVVESVKPF  347 (351)
Q Consensus       322 ~~~~~~~~l~s~~-------~dg~v~vw~~~~~  347 (351)
                      ++|+++ .|++++       .+++|.+||+.+.
T Consensus       428 ~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~  459 (543)
T 1nir_A          428 THPKSS-HLYVDTTFNPDARISQSVAVFDLKNL  459 (543)
T ss_dssp             CCTTCC-EEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             cCCCCC-cEEEecCCCCCcccCceEEEEECCCC
Confidence            999999 677766       3789999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=7.8e-24  Score=180.06  Aligned_cols=239  Identities=8%  Similarity=-0.023  Sum_probs=172.8

Q ss_pred             eeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEc
Q 018697           71 LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSL  150 (351)
Q Consensus        71 i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~  150 (351)
                      ..|.+++..++++   .+.++.|.+||..         +.+....+..+...+ +++|+|+++.+++++..++.|.+||+
T Consensus         3 ~~~~~~~~~~~v~---~~~~~~v~~~d~~---------~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A            3 AMFQTTSNFGIVV---EQHLRRISFFSTD---------TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             ----CCCCEEEEE---EGGGTEEEEEETT---------TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             eeEcCCCCEEEEE---ecCCCeEEEEeCc---------ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            4566777777766   3788999999988         556666666666677 99999999964445555889999999


Q ss_pred             CCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-C--eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEE
Q 018697          151 DCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~  226 (351)
                      .++........    .+..+..+++|+|++++++++..+ +  .|.+||+.+++.+..+.... +.+++|+|++++++++
T Consensus        70 ~~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A           70 QLEPPKVVAIQ----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILI  145 (331)
T ss_dssp             SSSSCEEEEEE----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEE
T ss_pred             CCCceeEEecc----cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEE
Confidence            87543122111    122244449999999999855544 3  99999999988777776544 8999999999866777


Q ss_pred             ecCCCe-EEEEecccCCcce---eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          227 AADESG-IHLWDLRMLKAPI---QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       227 ~~~dg~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                      ...++. |.+|++...+...   .........+..++|+|+|+.+++++..++.|.+||+..                  
T Consensus       146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~------------------  207 (331)
T 3u4y_A          146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN------------------  207 (331)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS------------------
T ss_pred             ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC------------------
Confidence            677788 9999987533221   122234456799999999933556666789999999987                  


Q ss_pred             cccc---ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          303 ANSL---LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       303 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                       ++.   +..+..+ ..+..++|+|+|++++++...++.|.+||+.+
T Consensus       208 -~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          208 -PENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             -TTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             -CcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence             565   5566544 45789999999995556666788999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3.6e-24  Score=201.71  Aligned_cols=284  Identities=13%  Similarity=0.094  Sum_probs=198.4

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCC-----EEEEEEeCCCCCeEEEEeeecCC------------------------c
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEEN-----EVHLLRLSSGGTELICEGLFSHP------------------------N   66 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~h~------------------------~   66 (351)
                      .+.+..+.+++++.+++.+...   ++     .|++|++.....  . ..+..+.                        .
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~---d~~~~~~~i~~~d~~~g~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGK---DSDRNQLDLWSYDIGSGQT--R-LLVDSKVVLPGTETLSDEEKARRERQRIAAMT  109 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECC---SSCTTEEEEEEEETTTCCE--E-EEECGGGTC--------------------CCE
T ss_pred             CCCCCCceEecCCCEEEEEecc---CCCCcccEEEEEECCCCce--e-Eccchhhcccccccccchhhhhhhhhhhcccc
Confidence            4557778889999999887531   33     777887765432  1 2222222                        3


Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce--eeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      .|.+++|+||++.|+++.     ++.|.+||+.         ...  ....+..|...+.+++|+|+|+.  ++...++.
T Consensus       110 ~v~~~~~SpDg~~l~~~~-----~~~i~~~d~~---------~~~~~~~~~l~~~~~~~~~~~~SPDG~~--la~~~~~~  173 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPL-----GGELYLYDLK---------QEGKAAVRQLTHGEGFATDAKLSPKGGF--VSFIRGRN  173 (741)
T ss_dssp             ESCCCEECTTSSEEEEEE-----TTEEEEEESS---------SCSTTSCCBCCCSSSCEEEEEECTTSSE--EEEEETTE
T ss_pred             CcceeEECCCCCEEEEEe-----CCcEEEEECC---------CCCcceEEEcccCCcccccccCCCCCCE--EEEEeCCc
Confidence            489999999999998863     3899999987         221  34456678888999999999994  44434679


Q ss_pred             EEEEEcCCCCCCccccccccc----Cc--------ccceeeeEECCCCCcEEEeecCC----------------------
Q 018697          145 IFLWSLDCSNKNAQVQSKQSS----GM--------LHYLSGGAWDPHDVNAVAATCES----------------------  190 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~----~~--------~~~v~~~~~~~~~~~l~~~~~d~----------------------  190 (351)
                      |++||+.++... .+......    ++        ...+.+++|+||++.|++++.|+                      
T Consensus       174 i~~~d~~~g~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          174 LWVIDLASGRQM-QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EEEEETTTTEEE-ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EEEEecCCCCEE-EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            999999864322 11111100    00        01257899999999999987665                      


Q ss_pred             -----------eEEEEEccc-CCcCceeec---ce-eEEEEcCCCCCcEEEEec-----CCCeEEEEecccCCcceeEee
Q 018697          191 -----------SVQFWDLRS-MGKTNSIEH---AH-VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       191 -----------~i~iwd~~~-~~~~~~~~~---~~-v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~  249 (351)
                                 .|++||+.+ ++.......   .. +..++| |+|+. |+++.     .+..|++||+.+ ++....+.
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~-l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~  329 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH-LSFQRQSRDQKKLDLVEVTLAS-NQQRVLAH  329 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE-EEEEEEETTSSEEEEEEEETTT-CCEEEEEE
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE-EEEEEecccCCeEEEEEEECCC-CceEEEEE
Confidence                       888999988 765433221   22 899999 99994 55433     356899999987 55555555


Q ss_pred             CCCC----ceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE-EeCC
Q 018697          250 GHTH----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL-AWSS  324 (351)
Q Consensus       250 ~~~~----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~  324 (351)
                      .+..    .+..++|+|+| +++++++.|+.++||.+..                  .+. ...+..|...|..+ .|+|
T Consensus       330 ~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~------------------~~~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          330 ETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDS------------------KGK-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             EECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECS------------------SSC-EEESCCSSSCEEEEEEEET
T ss_pred             cCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcC------------------CCC-eeeeeecceEEEeEeEEeC
Confidence            4443    45689999999 7999999999888888764                  034 66677777778887 5999


Q ss_pred             CCCceEEEeeeCC--eEEEeecC
Q 018697          325 REPWIFASLSYDG--RVVVESVK  345 (351)
Q Consensus       325 ~~~~~l~s~~~dg--~v~vw~~~  345 (351)
                      +++.++++++.++  .++||+++
T Consensus       390 dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          390 KAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             TTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCEEEEEEeCCCCceEEEEEEE
Confidence            9985556666666  89999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=9.2e-24  Score=197.84  Aligned_cols=284  Identities=11%  Similarity=0.065  Sum_probs=193.7

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+..+.++++ .+++++.     ++.+++|++...  .  ...+..+...+.+++|+|+++.|+.+     .++.|.+|+
T Consensus        83 ~v~~~~~spd-~~~~~~~-----~~~i~~~d~~~~--~--~~~l~~~~~~~~~~~~SpdG~~la~~-----~~~~i~v~~  147 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLFT-----QGGLVGFDMLAR--K--VTYLFDTNEETASLDFSPVGDRVAYV-----RNHNLYIAR  147 (706)
T ss_dssp             CCEEEEETTT-TEEEEEE-----TTEEEEEETTTT--E--EEEEECCTTCCTTCEECTTSSEEEEE-----ETTEEEEEE
T ss_pred             CceeEEECCC-CeEEEEE-----CCEEEEEECCCC--c--eEEccCCcccccCCcCCCCCCEEEEE-----ECCeEEEEe
Confidence            4667778888 6777653     388999988653  2  23455677889999999999998885     568999999


Q ss_pred             cccccCCCCCCcceeeeeeecccc--------------ceeEEEecCCCCCcEEEEe-----------------------
Q 018697           98 IPELYGQLNSPQLERIAALDAHVG--------------KINCVLWWSSGRHDKLVSI-----------------------  140 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~--------------~v~~~~~~~~~~~~~~~~~-----------------------  140 (351)
                      +....+    ...+.......+..              .+.++.|+|||+. +++++                       
T Consensus       148 ~~~~~~----~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          148 GGKLGE----GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             CBCTTS----CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             cCcccc----cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEE
Confidence            872000    00333332222322              2588999999996 44433                       


Q ss_pred             ----------cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-----eEEEEEcccCCcCce
Q 018697          141 ----------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGKTNS  205 (351)
Q Consensus       141 ----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~  205 (351)
                                .+..|++||+.++... .+..  ...+...+.+++|+|+++.|++++.++     .|++||+.+++....
T Consensus       223 ~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~  299 (706)
T 2z3z_A          223 LYYPMAGTPSHHVTVGIYHLATGKTV-YLQT--GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT  299 (706)
T ss_dssp             ECCCBTTSCCCEEEEEEEETTTTEEE-ECCC--CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred             eeCCCCCCCCCeeEEEEEECCCCceE-eecc--CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence                      3467999999864322 1111  113445789999999999999887665     999999998843333


Q ss_pred             eecc-e------eEEEEcCC--CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeE-EEecCCCCCeEEEeeCCC
Q 018697          206 IEHA-H------VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       206 ~~~~-~------v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg  275 (351)
                      +... +      +..++|+|  +|+ +++++..++.+++|++...+..+..+..+...+.. ++|+|+++.++++++.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          300 LFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             EEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             EEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            3211 1      35789999  998 78889899999999887435567777778777877 799999933445555554


Q ss_pred             ----eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC---CeEEEeecCc
Q 018697          276 ----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD---GRVVVESVKP  346 (351)
Q Consensus       276 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~  346 (351)
                          .|..||...                   +. ...+. |...+.+++|+|+|+.++++++.+   +.|++||+..
T Consensus       379 ~~~~~l~~~d~~~-------------------~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          379 PLERHFYCIDIKG-------------------GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             TTCBEEEEEETTC-------------------CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             CceEEEEEEEcCC-------------------CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence                566666655                   33 23332 556689999999999444444433   5699999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=3e-23  Score=177.94  Aligned_cols=270  Identities=11%  Similarity=0.075  Sum_probs=193.3

Q ss_pred             eecCCCCcceEEEeeeeeC---CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           21 DVKADTDHTSFLTGTLSLK---EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .+.++++..+++++.....   .++.+.+|+....  ... ..+ .....+..++|+|+++.++++   ...++.|.+||
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~-~~~-~~~~~~~~~~~s~dg~~l~v~---~~~~~~v~~~d  117 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVT-QAI-HNDLKPFGATINNTTQTLWFG---NTVNSAVTAID  117 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEE-EEE-EESSCCCSEEEETTTTEEEEE---ETTTTEEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEE-EEE-ecCCCcceEEECCCCCEEEEE---ecCCCEEEEEe
Confidence            4566778777877653221   1456776665543  222 222 234568899999999987776   36778999999


Q ss_pred             cccccCCCCCCcceeeeeeecccc---------ceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           98 IPELYGQLNSPQLERIAALDAHVG---------KINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ..         +.+.+..+..+..         .+.+++|+|+++.++++. +.++.|.+||+.++.....+.     .+
T Consensus       118 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~  183 (353)
T 3vgz_A          118 AK---------TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-----NT  183 (353)
T ss_dssp             TT---------TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-----CC
T ss_pred             CC---------CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-----CC
Confidence            87         5566666655432         278899999999645554 357899999998654332221     11


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                      ...+.+++|+|+++.+++++.++.|.+||+.+++....+..     .+ +..++|+|+++.++++...++.|.+||+.+ 
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-  262 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-  262 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-
Confidence            22578899999999999999999999999999887766653     22 788999999996666666679999999987 


Q ss_pred             CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      .+.+..+....  ...++|+|++..++++...++.|.+||..+                   ++.+..+.... .+.+++
T Consensus       263 ~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~-~~~~~~  320 (353)
T 3vgz_A          263 GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS-------------------YKVVKTFDTPT-HPNSLA  320 (353)
T ss_dssp             CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT-------------------TEEEEEEECCS-EEEEEE
T ss_pred             CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC-------------------CeEEEEEecCC-CCCeEE
Confidence            55666666433  267999999933555555799999999988                   77777665543 579999


Q ss_pred             eCCCCCceEEEee
Q 018697          322 WSSREPWIFASLS  334 (351)
Q Consensus       322 ~~~~~~~~l~s~~  334 (351)
                      |+|+++.++++..
T Consensus       321 ~s~dg~~l~v~~~  333 (353)
T 3vgz_A          321 LSADGKTLYVSVK  333 (353)
T ss_dssp             ECTTSCEEEEEEE
T ss_pred             EcCCCCEEEEEEc
Confidence            9999994444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.1e-23  Score=174.01  Aligned_cols=223  Identities=11%  Similarity=0.068  Sum_probs=164.5

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCC-CCCCccccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDC-SNKNAQVQSKQSS  165 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~  165 (351)
                      ++.++.|++||+.         ..+.. .+..|...|.+++|+|+++.  ++.+.++.|++||+.+ +... ......  
T Consensus        18 ~~~~~~i~~~d~~---------~~~~~-~~~~~~~~v~~~~~spdg~~--l~~~~~~~i~~~d~~~~~~~~-~~~~~~--   82 (297)
T 2ojh_A           18 GSMRSSIEIFNIR---------TRKMR-VVWQTPELFEAPNWSPDGKY--LLLNSEGLLYRLSLAGDPSPE-KVDTGF--   82 (297)
T ss_dssp             CCCCEEEEEEETT---------TTEEE-EEEEESSCCEEEEECTTSSE--EEEEETTEEEEEESSSCCSCE-ECCCTT--
T ss_pred             CCcceeEEEEeCC---------CCcee-eeccCCcceEeeEECCCCCE--EEEEcCCeEEEEeCCCCCCce-Eecccc--
Confidence            4678999999987         33433 45578899999999999994  4444588999999986 4332 222111  


Q ss_pred             CcccceeeeEECCCCCcEEEee--cCCeEEEEEc--ccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDL--RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~--~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                       +...+.+++|+|+++.|++++  .++...+|.+  .+++ ...+.... +..++|+|+++.+++++..++.+++|+++.
T Consensus        83 -~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           83 -ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             -CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             -ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence             234788999999999999988  3345555554  4443 33333233 888999999996565888899999999765


Q ss_pred             CCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                      .......+..+...+.+++|+|++ .+|+.++ .++.+++|++...                  ...+..+..|...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          161 DSGVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVD------------------GSSVERITDSAYGDWF  221 (297)
T ss_dssp             TTCCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETT------------------SSCEEECCCCSEEEEE
T ss_pred             CCCcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCC------------------CCCcEEEecCCcccCC
Confidence            444566777788899999999999 6666554 6899999998731                  4556667777788999


Q ss_pred             EEeCCCCCceEEEeeeC-----------CeEEEeecCc
Q 018697          320 LAWSSREPWIFASLSYD-----------GRVVVESVKP  346 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~  346 (351)
                      ++|+|+++ +|+.++.+           +.|++||+..
T Consensus       222 ~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          222 PHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             EEECTTSS-EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             eEECCCCC-EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            99999999 66666654           5699999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=9.8e-24  Score=179.66  Aligned_cols=262  Identities=9%  Similarity=0.047  Sum_probs=184.8

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCc-ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPN-EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      .++.+.+|++...  ........++.. .+..++|+|+++.++++   +..++.|.+||+.         +.+.+..+..
T Consensus         9 ~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~---~~~~~~v~~~d~~---------~~~~~~~~~~   74 (337)
T 1pby_B            9 RPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYAT---VNKSESLVKIDLV---------TGETLGRIDL   74 (337)
T ss_dssp             TTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEE---ETTTTEEEEEETT---------TCCEEEEEEC
T ss_pred             CCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEE---eCCCCeEEEEECC---------CCCeEeeEEc
Confidence            5788988887643  222222122222 58899999999888776   3678899999987         4455554432


Q ss_pred             -----cccceeEEEecCCCCCcEEEEe-----------cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc
Q 018697          119 -----HVGKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (351)
Q Consensus       119 -----h~~~v~~~~~~~~~~~~~~~~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (351)
                           |...+.+++|+|+++.++++..           .++.|.+||+.++.....+..      ...+.+++|+|++++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~  148 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSK  148 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSC
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCE
Confidence                 1236788999999986333321           479999999986433222211      125788999999998


Q ss_pred             EEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC-----------------------eEEEEec
Q 018697          183 AVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-----------------------GIHLWDL  238 (351)
Q Consensus       183 l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~  238 (351)
                      ++++  ++.|.+||+.+++....+.... ...+.|+|++..+++++..++                       .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8887  6889999999887766555333 234588999985544444444                       4689999


Q ss_pred             ccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018697          239 RMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (351)
                      ++.......+..+...+.+++|+|++ .+++++  ++.|.+||+..                   ++.+..+..+ ..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~-------------------~~~~~~~~~~-~~~~  283 (337)
T 1pby_B          227 ETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK-------------------NASIKRVPLP-HSYY  283 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT-------------------TEEEEEEECS-SCCC
T ss_pred             CCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCC-------------------CcCcceecCC-Ccee
Confidence            87332223344566778899999999 888877  78999999987                   6666666543 3578


Q ss_pred             EEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          319 GLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +++|+|+++ .+++++.++.|++||+.+.
T Consensus       284 ~~~~s~dg~-~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          284 SVNVSTDGS-TVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEECTTSC-EEEEESBSSEEEEEETTTC
T ss_pred             eEEECCCCC-EEEEEcCCCcEEEEECcCC
Confidence            999999999 6667788999999998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=6.4e-23  Score=175.88  Aligned_cols=250  Identities=9%  Similarity=0.001  Sum_probs=184.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecC---CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTG---ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ....+..++|+|+++.++++...+.   .++.|.+||..         +.+.+..+.. ...+..++|+|+++.++++..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~---------~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~  108 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV---------TLEVTQAIHN-DLKPFGATINNTTQTLWFGNT  108 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT---------TCCEEEEEEE-SSCCCSEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC---------CCeEEEEEec-CCCcceEEECCCCCEEEEEec
Confidence            4457889999999998887741111   27789999987         5566666643 345788999999996555556


Q ss_pred             cCCcEEEEEcCCCCCCccccccccc----CcccceeeeEECCCCCcEEEee--cCCeEEEEEcccCCcCceee-cce-eE
Q 018697          141 DEENIFLWSLDCSNKNAQVQSKQSS----GMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIE-HAH-VR  212 (351)
Q Consensus       141 ~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~-~~~-v~  212 (351)
                      .++.|.+||+.++.....+......    .....+.+++|+|+++.+++++  .++.|.+||+.+++....+. .+. +.
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence            6899999999876543332221100    0001268899999999888776  47899999999988777776 333 88


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC----CCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG----HTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~  287 (351)
                      .++|+|+++ .+++++.++.|.+||+.+ .+.+..+..    +...+..++|+|++ .+++. ...++.|.+||..+   
T Consensus       189 ~~~~s~dg~-~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~---  262 (353)
T 3vgz_A          189 GLALDSEGK-RLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRN---  262 (353)
T ss_dssp             CCEEETTTT-EEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTT---
T ss_pred             eEEECCCCC-EEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCC---
Confidence            999999998 677788899999999987 556666553    45568889999999 65554 44569999999988   


Q ss_pred             CCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          288 DELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                      ++.+..+....  ...++|+|+++.++++...++.|.+||+.+.
T Consensus       263 ----------------~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          263 ----------------GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ----------------CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ----------------CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                            66666665433  2579999999866666668999999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2e-22  Score=189.73  Aligned_cols=281  Identities=11%  Similarity=0.038  Sum_probs=197.8

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +..+.++|++..++++..     +.|++|++...... ....+..|...+..++|+|+|+.|+.+     .++.|.+|++
T Consensus       111 v~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~-~~~~l~~~~~~~~~~~~SPDG~~la~~-----~~~~i~~~d~  179 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKA-AVRQLTHGEGFATDAKLSPKGGFVSFI-----RGRNLWVIDL  179 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-----TEEEEEESSSCSTT-SCCBCCCSSSCEEEEEECTTSSEEEEE-----ETTEEEEEET
T ss_pred             cceeEECCCCCEEEEEeC-----CcEEEEECCCCCcc-eEEEcccCCcccccccCCCCCCEEEEE-----eCCcEEEEec
Confidence            566778999999988753     88999998764100 123456788899999999999998886     3568999998


Q ss_pred             ccccCCCCCCcceeeeeeeccccc----------------eeEEEecCCCCCcEEEEecCC-------------------
Q 018697           99 PELYGQLNSPQLERIAALDAHVGK----------------INCVLWWSSGRHDKLVSIDEE-------------------  143 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~~~~~~~~~~~~d~-------------------  143 (351)
                      .         ..+.......+...                +.+++|+|||+. +++++.|+                   
T Consensus       180 ~---------~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          180 A---------SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             T---------TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             C---------CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccce
Confidence            7         33433333333322                478999999997 44444333                   


Q ss_pred             --------------cEEEEEcCC-CCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEcccCCcC
Q 018697          144 --------------NIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRSMGKT  203 (351)
Q Consensus       144 --------------~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~  203 (351)
                                    .|++||+.+ +... .+...  ..+...+..++| ||++.|++++.     +..|++||+.+++..
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQTQ-WIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCCE-EECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCceE-EecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence                          788889876 5422 22111  135568999999 99999987753     578999999988765


Q ss_pred             ceeecce------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEE-EecCCCCCeEEEeeCCC-
Q 018697          204 NSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV-CCNPEYDGFILSAGTDS-  275 (351)
Q Consensus       204 ~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg-  275 (351)
                      ..+....      +..++|+|+|+ ++++++.++.++||.+...+. ...+..|...+..+ .|+|+++.++++++.++ 
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~  403 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA  403 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred             EEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence            5544211      35899999999 888899999888887764344 77777888888887 59999933445666666 


Q ss_pred             -eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC---CeEEEeecC
Q 018697          276 -TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD---GRVVVESVK  345 (351)
Q Consensus       276 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~vw~~~  345 (351)
                       .++||++...                  +.....+.. ...+..++|+|+++.++++.+..   ..+.+|+..
T Consensus       404 ~~~~l~~~~~~------------------g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          404 RESQIYAVPLQ------------------GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             TCBEEEEEETT------------------CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             ceEEEEEEEcC------------------CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence             8999998741                  333444544 45678999999999555554443   457888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=3.2e-22  Score=170.70  Aligned_cols=248  Identities=11%  Similarity=0.156  Sum_probs=167.0

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (351)
                      .+.+++++..++++..   .++.+.+|++....+.+...........+..++|+|+++.++++   +..++.|.+|++..
T Consensus        42 ~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~~~~i~~~d~~~  115 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG---SYNAGNVSVTRLED  115 (343)
T ss_dssp             CEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE---ETTTTEEEEEEEET
T ss_pred             eEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEE---ecCCCeEEEEECCC
Confidence            4557778777777642   34899999998544443322222233488999999999988876   35688999999841


Q ss_pred             ccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc-ccccCcccceeeeEECCC
Q 018697          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  179 (351)
                            ....+....+..+ ..+.+++|+|+++.+++++..++.|.+||+.+......... .........+.+++|+|+
T Consensus       116 ------~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          116 ------GLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             ------TEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             ------CccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence                  0033455555433 45889999999986443334789999999986332221110 000111236788999999


Q ss_pred             CCcEEEee-cCCeEEEEEccc--CCcC--cee---ecc----e-eEEEEcCCCCCcEEEEecCCCeEEEEecccC---Cc
Q 018697          180 DVNAVAAT-CESSVQFWDLRS--MGKT--NSI---EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML---KA  243 (351)
Q Consensus       180 ~~~l~~~~-~d~~i~iwd~~~--~~~~--~~~---~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~  243 (351)
                      ++++++++ .++.|.+||+..  ++..  ..+   ...    . +..++|+|+++++++++..++.|.+||+...   .+
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~  268 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS  268 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence            99887665 789999999964  3221  111   111    1 6689999999866667778999999999831   22


Q ss_pred             ceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcC
Q 018697          244 PIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVS  283 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~  283 (351)
                      .+..+..+.. +..++|+|++ .+|++++ .++.|.+|++.
T Consensus       269 ~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          269 KEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEE
T ss_pred             EeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEc
Confidence            3444554444 8899999999 7666666 68999999665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=2.8e-22  Score=172.86  Aligned_cols=282  Identities=11%  Similarity=0.044  Sum_probs=181.1

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeee--cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLF--SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (351)
                      ..+++|+.+.  .+.|++++++...+.+......  .....+..++|+|+++.|+++    +.+ .|.+|++..      
T Consensus         3 ~~~~vg~~~~--~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~----~~~-~v~~~~~~~------   69 (365)
T 1jof_A            3 HHLMIGTWTP--PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA----AMK-KWSSFAVKS------   69 (365)
T ss_dssp             EEEEEEESSS--SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE----EBT-EEEEEEEEE------
T ss_pred             EEEEEEEccC--CCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEE----ccc-eEEEEEECC------
Confidence            4577887642  2579999998776655433222  344578899999999988776    344 899999851      


Q ss_pred             CCcceeeeeee--ccccceeEEEecCCCCCcEEE-Ee-------------cCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697          107 SPQLERIAALD--AHVGKINCVLWWSSGRHDKLV-SI-------------DEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus       107 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~-~~-------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                        .++......  .+ +.+.+++|+|+++.++++ +.             .++.+.+|++................+...
T Consensus        70 --~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~  146 (365)
T 1jof_A           70 --PTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG  146 (365)
T ss_dssp             --TTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC
T ss_pred             --CCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc
Confidence              123222221  11 235668999999853333 22             589999999974332222111100012346


Q ss_pred             eeeeEECCCCCcEEEee-cCCeEEEEEcc-cCCcC--ceee--c-ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccC-
Q 018697          171 LSGGAWDPHDVNAVAAT-CESSVQFWDLR-SMGKT--NSIE--H-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML-  241 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~--~~~~--~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  241 (351)
                      +.+++|+|++++++++. .++.|++||+. +++..  ..+.  . +. +..++|+|+|++++++...++.|.+|++... 
T Consensus       147 ~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            88999999999888765 46899999998 66542  2232  1 23 8999999999944444445789999987531 


Q ss_pred             Ccce---eEee-------CCCC------ceeEEE-ecCCCCCeEEEeeCC-C-----eEEEEEcCCCCCCCCCCcccccC
Q 018697          242 KAPI---QELP-------GHTH------WTWAVC-CNPEYDGFILSAGTD-S-----TVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       242 ~~~~---~~~~-------~~~~------~v~~~~-~~~~~~~~l~s~~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                      ++..   ..+.       +|..      .+..++ |+|+| ++|+++..+ .     .|.+|++...             
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~-------------  292 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC-------------  292 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT-------------
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC-------------
Confidence            2221   1222       1222      588999 99999 777666542 3     8999999630             


Q ss_pred             Ccccccccce---eeccccceEEEEEeCC---CCCceEEEeee-CCeEEEeecCc
Q 018697          299 PNQRANSLLN---SYSDYEDSVYGLAWSS---REPWIFASLSY-DGRVVVESVKP  346 (351)
Q Consensus       299 ~~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~~~l~s~~~-dg~v~vw~~~~  346 (351)
                           ++...   ....+...+..++|+|   +|+ +|++++. ++.|.+|+++.
T Consensus       293 -----g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          293 -----GSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             -----SCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCEEEEEEEET
T ss_pred             -----CCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCeEEEEEEch
Confidence                 33322   1223444567899999   788 5666654 59999998854

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.5e-22  Score=189.63  Aligned_cols=241  Identities=12%  Similarity=0.114  Sum_probs=169.8

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      ..|.+++|+|+ +.++++     .++.|++||+.         ..+. ..+..+...+.+++|+|+|+.  ++...++.|
T Consensus        82 ~~v~~~~~spd-~~~~~~-----~~~~i~~~d~~---------~~~~-~~l~~~~~~~~~~~~SpdG~~--la~~~~~~i  143 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-----TQGGLVGFDML---------ARKV-TYLFDTNEETASLDFSPVGDR--VAYVRNHNL  143 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-----ETTEEEEEETT---------TTEE-EEEECCTTCCTTCEECTTSSE--EEEEETTEE
T ss_pred             cCceeEEECCC-CeEEEE-----ECCEEEEEECC---------CCce-EEccCCcccccCCcCCCCCCE--EEEEECCeE
Confidence            46999999999 676664     35899999987         3333 344466778899999999994  444568999


Q ss_pred             EEEEcCC-----CCCCccccccccc----------CcccceeeeEECCCCCcEEEee-----------------------
Q 018697          146 FLWSLDC-----SNKNAQVQSKQSS----------GMLHYLSGGAWDPHDVNAVAAT-----------------------  187 (351)
Q Consensus       146 ~iwd~~~-----~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~-----------------------  187 (351)
                      ++||+.+     +.... +......          .+...+.+++|+||+++|++++                       
T Consensus       144 ~v~~~~~~~~~~g~~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          144 YIARGGKLGEGMSRAIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             EEEECBCTTSCCCCCEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             EEEecCcccccCCCcEE-eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence            9999987     44322 1111100          0011258899999999999887                       


Q ss_pred             ----------cCCeEEEEEcccCCcCceeec-c--e-eEEEEcCCCCCcEEEEecCCC-----eEEEEecccCCcceeEe
Q 018697          188 ----------CESSVQFWDLRSMGKTNSIEH-A--H-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       188 ----------~d~~i~iwd~~~~~~~~~~~~-~--~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~  248 (351)
                                .+..|++||+.+++....... .  . +.+++|+|+|+ .+++++.++     .|++||+.+ ++....+
T Consensus       223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~  300 (706)
T 2z3z_A          223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAET-GRFVRTL  300 (706)
T ss_dssp             ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTT-CCEEEEE
T ss_pred             eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCC-CceeeEE
Confidence                      346899999988764333321 2  2 89999999998 566666554     899999987 4223332


Q ss_pred             e--CCCC---ceeEEEecC--CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE-E
Q 018697          249 P--GHTH---WTWAVCCNP--EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-L  320 (351)
Q Consensus       249 ~--~~~~---~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~  320 (351)
                      .  .+..   .+..++|+|  +| .++++++.|+.++||++..                  .+..+..+..|...+.. +
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~------------------~~~~~~~l~~~~~~v~~~~  361 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDT------------------TGRLIRQVTKGEWEVTNFA  361 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEET------------------TSCEEEECCCSSSCEEEEE
T ss_pred             EEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEEC------------------CCCEEEecCCCCeEEEeee
Confidence            2  2222   346789999  99 8999999999999998873                  15556667777777876 7


Q ss_pred             EeCCCCCceEEEeeeCC----eEEEeecCc
Q 018697          321 AWSSREPWIFASLSYDG----RVVVESVKP  346 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg----~v~vw~~~~  346 (351)
                      +|+|+++.++++++.++    .|..|++..
T Consensus       362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          362 GFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             EECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             EEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            99999985556666655    666666643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=7.5e-23  Score=187.42  Aligned_cols=233  Identities=9%  Similarity=-0.010  Sum_probs=169.0

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEec--
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSID--  141 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~--  141 (351)
                      ..+|++++|+|||+.|+.+.   ..|++++||++.         ..+. ..+..|. ..+..++|+|+ + +++++..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s---~~~g~~~lw~~~---------~g~~-~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~   85 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVG---FSEGSVNAYLYD---------GGET-VKLNREPINSVLDPHYGVG-R-VILVRDVSK   85 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEE---EETTEEEEEEEE---------TTEE-EECCSSCCSEECEECTTCS-E-EEEEEECST
T ss_pred             ccchheeecCCCCCeEEEEE---ccCCceeEEEEc---------CCCc-EeeecccccccccccCCCC-e-EEEEeccCC
Confidence            45799999999999998862   348999999986         3344 3444555 68999999999 4 3554443  


Q ss_pred             -CCcEEEEEcCC--CCCCcccccccccCcccceeeeEECCCCCcE-EEeecCCeEEEEEcccCCcCceeecceeEEEEcC
Q 018697          142 -EENIFLWSLDC--SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYD  217 (351)
Q Consensus       142 -d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~  217 (351)
                       +....+|.++.  ......+....      .+...+|+|+++.+ ++.+.++.+.+||+.+++........ ..+++|+
T Consensus        86 g~~~~~l~~~~~~~~g~~~~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~~~~~~s  158 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQRLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-GFGFVSD  158 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCEECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEE
T ss_pred             CCcceEEEEEeccCCCccccccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-CceEEEC
Confidence             45566666543  22222222111      23456888888654 34444555669999987654433322 4789999


Q ss_pred             CCCCcEEEEecCC----CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC--eEEEEEcCCCCCCCCC
Q 018697          218 TKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELP  291 (351)
Q Consensus       218 ~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  291 (351)
                      |||+ .+++++.+    +.|++||+.+ ++ ...+..|...+..++|+||| +.|+++..++  .|++||+..       
T Consensus       159 pDG~-~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~-------  227 (582)
T 3o4h_A          159 IRGD-LIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRD-------  227 (582)
T ss_dssp             EETT-EEEEEEEEETTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTT-------
T ss_pred             CCCC-EEEEEEEcCCCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCC-------
Confidence            9999 67766655    7899999886 43 45777888899999999999 8888888888  899999987       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEE--------eCCCCCceEEEeeeCCeEEEeec
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLA--------WSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                                  ++.. .+..|...+..++        |+|||. ++++++.|+.+++|++
T Consensus       228 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 ------------GSVE-DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID  274 (582)
T ss_dssp             ------------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred             ------------CcEE-EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE
Confidence                        5555 5666666666677        999995 9999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=6.8e-23  Score=180.24  Aligned_cols=204  Identities=11%  Similarity=0.088  Sum_probs=145.1

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC-------cccc---cccccCcccceeeeEECCCCCcEE----E
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-------AQVQ---SKQSSGMLHYLSGGAWDPHDVNAV----A  185 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-------~~~~---~~~~~~~~~~v~~~~~~~~~~~l~----~  185 (351)
                      ...+..+++++++.. +++++.++ +++|+.......       ....   ......+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345788999998883 55556666 999876421100       0000   000112344799999999999999    6


Q ss_pred             eecCCeEEEEEcccC--------CcCceee--cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC
Q 018697          186 ATCESSVQFWDLRSM--------GKTNSIE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       186 ~~~d~~i~iwd~~~~--------~~~~~~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      ++.|+.|++||++++        +.+..+.  .+|   |.+++|+|+...+|++++.||+|++||+++ ...+....+|.
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~  192 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPST  192 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCC
Confidence            778999999999865        2222222  234   999999998444899999999999999997 45555666789


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-------cccceEEEEEeCCC
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-------DYEDSVYGLAWSSR  325 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~  325 (351)
                      ..|.+++|+|+| .+|++|+.||.|++||.+.                    +....+.       .|...|.+++|+++
T Consensus       193 ~~v~~v~wspdg-~~lasgs~dg~v~iwd~~~--------------------~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          193 VAVTSVCWSPKG-KQLAVGKQNGTVVQYLPTL--------------------QEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             GCEEEEEECTTS-SCEEEEETTSCEEEECTTC--------------------CEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             CceeEEEEcCCC-CEEEEEcCCCcEEEEccCC--------------------cccccccCCcccCCCCceeEEEEEEecC
Confidence            999999999999 9999999999999999973                    1111221       23458999999998


Q ss_pred             CCceEEEeeeCC------eEEEeecCcc
Q 018697          326 EPWIFASLSYDG------RVVVESVKPF  347 (351)
Q Consensus       326 ~~~~l~s~~~dg------~v~vw~~~~~  347 (351)
                      +..+++....||      .+++|++.+.
T Consensus       252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          252 YVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceEEEEEccCCCccCCCCceEEEEeccC
Confidence            873334444453      3899998753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2.1e-22  Score=189.11  Aligned_cols=237  Identities=11%  Similarity=0.023  Sum_probs=167.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc---ceeEEEecCCCCCcEEEEec-
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG---KINCVLWWSSGRHDKLVSID-  141 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~-  141 (351)
                      ..+.+++|+|+++.+++     +.|+.|++||+.         +++....+..|..   .|.+++|+|||+. +++++. 
T Consensus        17 ~~~~~~~~spdg~~~~~-----~~dg~i~~~d~~---------~g~~~~~~~~~~~~~~~v~~~~~SpDg~~-l~~~~~~   81 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-----EQKGTVRLWNVE---------TNTSTVLIEGKKIESLRAIRYEISPDREY-ALFSYNV   81 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-----CSSSCEEEBCGG---------GCCCEEEECTTTTTTTTCSEEEECTTSSE-EEEEESC
T ss_pred             ccccccEEcCCCcEEEE-----eCCCCEEEEECC---------CCcEEEEeccccccccccceEEECCCCCE-EEEEecC
Confidence            35778999999986543     578999999998         5555566666654   4999999999996 444443 


Q ss_pred             --------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--e
Q 018697          142 --------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--V  211 (351)
Q Consensus       142 --------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v  211 (351)
                              ++.+++||+.++.. ..+.  ...++...+..++|+|||+.|+.++. +.|++||+.+++.........  +
T Consensus        82 ~~~~~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~  157 (723)
T 1xfd_A           82 EPIYQHSYTGYYVLSKIPHGDP-QSLD--PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV  157 (723)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCC-EECC--CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred             ccceeecceeeEEEEECCCCce-Eecc--CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence                    27899999987543 2221  11234445889999999999998875 799999999877654443222  3


Q ss_pred             ------------------EEEEcCCCCCcEEEEecCCC----------------------------------eEEEEecc
Q 018697          212 ------------------RNVDYDTKKKHLLVTAADES----------------------------------GIHLWDLR  239 (351)
Q Consensus       212 ------------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~  239 (351)
                                        .+++|+|||+ .|++++.++                                  .|++||+.
T Consensus       158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~  236 (723)
T 1xfd_A          158 IYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (723)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence                              6899999999 566655332                                  79999998


Q ss_pred             cCCcceeEeeCC------CCceeEEEecCCCCCeEEEeeC----CCeEEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018697          240 MLKAPIQELPGH------THWTWAVCCNPEYDGFILSAGT----DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (351)
Q Consensus       240 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                      . ++....+..+      ...+..++|+|+| +++++...    +..|++||+.+                   ++....
T Consensus       237 ~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~-------------------g~~~~~  295 (723)
T 1xfd_A          237 G-PTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATT-------------------GVCTKK  295 (723)
T ss_dssp             S-SCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTT-------------------CCEEEE
T ss_pred             C-CceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCC-------------------CcceEE
Confidence            6 4444555544      5678999999999 77766543    35799999987                   555544


Q ss_pred             ecc-ccceE----EEEEeCCCCCceEEE-eeeCC------eEEEee
Q 018697          310 YSD-YEDSV----YGLAWSSREPWIFAS-LSYDG------RVVVES  343 (351)
Q Consensus       310 ~~~-~~~~v----~~~~~~~~~~~~l~s-~~~dg------~v~vw~  343 (351)
                      +.. +...+    ..++|+|+|+.+++. ...++      .|.+|+
T Consensus       296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            433 23333    378999999954444 45677      566676

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=7.8e-22  Score=168.77  Aligned_cols=236  Identities=9%  Similarity=0.017  Sum_probs=166.9

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      .+++++++..+++.    +.++.|.+||+.         +.+.+..+..+. ..+..++|+|+++.++++...++.|.+|
T Consensus         4 g~~~~~~~~~~v~~----~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~   70 (349)
T 1jmx_B            4 GPALKAGHEYMIVT----NYPNNLHVVDVA---------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   70 (349)
T ss_dssp             CCCCCTTCEEEEEE----ETTTEEEEEETT---------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCCEEEEEe----CCCCeEEEEECC---------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence            45777777666664    578999999988         556666665443 2578899999998644555678999999


Q ss_pred             EcCCCCCCccccccccc-CcccceeeeEECCCCCcEEEeecC------------CeEEEEEcccCCcC---ceeecce-e
Q 018697          149 SLDCSNKNAQVQSKQSS-GMLHYLSGGAWDPHDVNAVAATCE------------SSVQFWDLRSMGKT---NSIEHAH-V  211 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~---~~~~~~~-v  211 (351)
                      |+.++.....+...... .....+.+++|+|+++++++++.+            +.|.+||+.+++..   ..+.... +
T Consensus        71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           71 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             eCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence            99865433222211100 002247889999999999988865            89999999985433   3333223 8


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC---------------------------------------
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------------------------------------  252 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------  252 (351)
                      .+++|+|+++ +++ ++.  .|++||+.+ .+.+..+..+.                                       
T Consensus       151 ~~~~~s~dg~-l~~-~~~--~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          151 YLMRAADDGS-LYV-AGP--DIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             CCEEECTTSC-EEE-ESS--SEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             cceeECCCCc-EEE-ccC--cEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            8999999998 665 433  499999986 44444443221                                       


Q ss_pred             -----------------------------CceeEEEecC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          253 -----------------------------HWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       253 -----------------------------~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                                                   ..+..++|+| ++ .+++++  ++.|.+||+.+                  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~------------------  284 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQ------------------  284 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTT------------------
T ss_pred             ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECcc------------------
Confidence                                         1345677889 98 788777  88999999988                  


Q ss_pred             ccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                       ++.+..+... ..+.+++|+|+++ .|++++.++.|++||+.+.
T Consensus       285 -~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          285 -RKLIKAANLD-HTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             -TEEEEEEECS-SCCCEEEECSSSS-CEEEESBSSEEEEEETTTT
T ss_pred             -CeEEEEEcCC-CCccceEECCCCC-EEEEecCCCeEEEEecccc
Confidence             6666666433 3478999999998 5666788899999999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2e-21  Score=182.45  Aligned_cols=285  Identities=11%  Similarity=0.029  Sum_probs=181.1

Q ss_pred             eeeecCCCCcceEEEeeeeeC-----CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceE
Q 018697           19 ISDVKADTDHTSFLTGTLSLK-----EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i   93 (351)
                      +..+.++|++.+++.+.....     .++.+++|++..... .......+|...+..++|||+|+.|+.+     .++.|
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-----~~~~i  136 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-----FENNI  136 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEE-----ECCeE
Confidence            455678899998888753222     137888998876532 1112223455569999999999999886     23789


Q ss_pred             EEEEcccccCCCCCCcceeeeeeeccccc------------------eeEEEecCCCCCcEEEEecC-------------
Q 018697           94 AIWQIPELYGQLNSPQLERIAALDAHVGK------------------INCVLWWSSGRHDKLVSIDE-------------  142 (351)
Q Consensus        94 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~~~~~~~~~~~d-------------  142 (351)
                      .+|++.         ..+.......+...                  +.+++|+|||+.+++++..+             
T Consensus       137 ~~~~~~---------~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          137 YYCAHV---------GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEESSS---------SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEECC---------CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            999987         33443333333332                  37899999999633333221             


Q ss_pred             --------------------CcEEEEEcCCCCCCcccccc-cccCcccceeeeEECCCCCcEEEeec----CCeEEEEEc
Q 018697          143 --------------------ENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDL  197 (351)
Q Consensus       143 --------------------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~  197 (351)
                                          ..|++||+.++.....+... ....+...+..++|+||++.+++...    +..|++||+
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                                17899999875532222211 11122457899999999998876643    368999999


Q ss_pred             ccCCcCceeecce---e----EEEEcCCCCCcEEEE-ecCCC------eEEEEecccCCc--ceeEeeCCCCceeE-EEe
Q 018697          198 RSMGKTNSIEHAH---V----RNVDYDTKKKHLLVT-AADES------GIHLWDLRMLKA--PIQELPGHTHWTWA-VCC  260 (351)
Q Consensus       198 ~~~~~~~~~~~~~---v----~~~~~~~~~~~~l~~-~~~dg------~i~i~d~~~~~~--~~~~~~~~~~~v~~-~~~  260 (351)
                      .+++....+...+   +    ..++|+|+|+.+++. +..++      .|.+||+...+.  ....+..+...+.. ++|
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~  367 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence            9887655543222   3    388999999965554 55667      566677322232  14455433444544 699


Q ss_pred             cCCCCCeEEEee-CC--CeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc---ccceEEEEEeCCCCCceEEEee
Q 018697          261 NPEYDGFILSAG-TD--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       261 ~~~~~~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      +|+| ..|+..+ .+  +.+++|++....                 ......+..   |...+..++|+|+|+.+++..+
T Consensus       368 spdg-~~l~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          368 DEKG-NKIYFLSTEDLPRRRQLYSANTVG-----------------NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             ETTT-TEEEEEESSSCTTCCEEEEECSST-----------------TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             cCCC-CEEEEEEcCCCCcceEEEEEeCCC-----------------CCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            9999 6665544 44  789999987511                 112222322   5666889999999995555554


Q ss_pred             eC
Q 018697          335 YD  336 (351)
Q Consensus       335 ~d  336 (351)
                      ..
T Consensus       430 ~~  431 (723)
T 1xfd_A          430 GP  431 (723)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.2e-22  Score=175.19  Aligned_cols=210  Identities=13%  Similarity=0.054  Sum_probs=145.8

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC----Cc---ceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS----PQ---LERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~----~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ...++.+++++++..++++    +.++ +++|+..........    ..   ......+ .+...|.+++|+|+++.+++
T Consensus        36 ~~~~n~lavs~~~~~l~~~----~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAG----GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEE----ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCCEEEEE----CCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEE
Confidence            4468899999998888875    4565 899886532111000    00   0111122 45678999999999995332


Q ss_pred             ---EEecCCcEEEEEcCCC-----CCCccc-ccccccCcccceeeeEECCC-CCcEEEeecCCeEEEEEcccCCcCceee
Q 018697          138 ---VSIDEENIFLWSLDCS-----NKNAQV-QSKQSSGMLHYLSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIE  207 (351)
Q Consensus       138 ---~~~~d~~v~iwd~~~~-----~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~  207 (351)
                         +++.|+.|++||+.+.     .....+ ......+|...|.+++|+|+ +..|++++.||.|++||++++.......
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence               3467999999998753     110000 11233467789999999998 6788899999999999999875543333


Q ss_pred             c-ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------CCceeEEEecCCCCCeEEE-eeCCC--
Q 018697          208 H-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------THWTWAVCCNPEYDGFILS-AGTDS--  275 (351)
Q Consensus       208 ~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s-~~~dg--  275 (351)
                      . .. +.+++|+|++. +|++|+.||.|++||++  .+....+..|       ...|.+++|++++ .++++ ...||  
T Consensus       190 ~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTL  265 (434)
T ss_dssp             CGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCS
T ss_pred             CCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCcc
Confidence            1 22 99999999998 79999999999999998  2344444433       3389999999988 66644 33443  


Q ss_pred             ----eEEEEEcCC
Q 018697          276 ----TVNLWLVST  284 (351)
Q Consensus       276 ----~i~iwd~~~  284 (351)
                          .+++|+++.
T Consensus       266 ~~~~~v~i~~l~~  278 (434)
T 2oit_A          266 ETSPDVVMALLPK  278 (434)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCCCceEEEEecc
Confidence                389999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.3e-20  Score=183.48  Aligned_cols=293  Identities=8%  Similarity=-0.067  Sum_probs=199.2

Q ss_pred             EeeeecCCCCcceEEEeeeee--CCCCEEEEEEeCCCCCeEEEEeeecCCcce-------eeeeeCCCCCceEEEEeecC
Q 018697           18 CISDVKADTDHTSFLTGTLSL--KEENEVHLLRLSSGGTELICEGLFSHPNEI-------WDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .+..+.++|++.+++.++...  .....|++|++..  +.  ...+..|...+       ..++|+|+++ ++++.   +
T Consensus        54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~--g~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~---~  125 (1045)
T 1k32_A           54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GE--IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST---D  125 (1045)
T ss_dssp             EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TE--EEECCCCCEEEETTEECSEEEEECTTCC-EEEEE---C
T ss_pred             cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC--CC--eEEcccCCCcccccccccccccCCCCCE-EEEEE---C
Confidence            456677899999998875432  1224566666543  32  45677888888       9999999998 44442   3


Q ss_pred             Cc------ceEEEEEcccccCC--CCC--------------------------------------Ccceeeeeeeccccc
Q 018697           89 ES------YGAAIWQIPELYGQ--LNS--------------------------------------PQLERIAALDAHVGK  122 (351)
Q Consensus        89 ~d------~~i~vw~~~~~~~~--~~~--------------------------------------~~~~~~~~~~~h~~~  122 (351)
                      .+      ..|.+|++......  ...                                      +.......+..|...
T Consensus       126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~  205 (1045)
T 1k32_A          126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH  205 (1045)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred             CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence            32      34666766421100  000                                      000122334678888


Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCCC-CCccccccc----------------------------------ccC-
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSKQ----------------------------------SSG-  166 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~----------------------------------~~~-  166 (351)
                      +.++.|+++  .+++++..++.+.||.+.... ....+....                                  ... 
T Consensus       206 v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~  283 (1045)
T 1k32_A          206 VSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIG  283 (1045)
T ss_dssp             CEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCC
T ss_pred             ccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccC
Confidence            899999887  335555677888888765311 111110000                                  000 


Q ss_pred             ----------cccceeeeEEC-CCCCcEEEeecCCeEEEEEcccCCcCceee-cc-eeEEEEcCCCCCcEEEEecCCCeE
Q 018697          167 ----------MLHYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKTNSIE-HA-HVRNVDYDTKKKHLLVTAADESGI  233 (351)
Q Consensus       167 ----------~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~-~v~~~~~~~~~~~~l~~~~~dg~i  233 (351)
                                |...+.+++|+ |+++.|++++ ++.|.+|++..++...... .. .+..++|+ +++ .++.++.+..+
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l  360 (1045)
T 1k32_A          284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV-AFIHGTREGDF  360 (1045)
T ss_dssp             CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE-EEEEEETTEEE
T ss_pred             cccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC-eEEEEECCCce
Confidence                      12257888999 9999888877 7889999988765332211 12 28899999 988 57777778888


Q ss_pred             E-EEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc
Q 018697          234 H-LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD  312 (351)
Q Consensus       234 ~-i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (351)
                      . +||+.. +. ...+..|...+..++|+|+| .+|++++.++.|++||+.+                   ++.......
T Consensus       361 ~~~~d~~~-~~-~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~t-------------------g~~~~~~~~  418 (1045)
T 1k32_A          361 LGIYDYRT-GK-AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLET-------------------GKPTVIERS  418 (1045)
T ss_dssp             EEEEETTT-CC-EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEEEC
T ss_pred             EEEEECCC-CC-ceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCC-------------------CceEEeccC
Confidence            8 899875 33 44555788899999999999 9999999999999999988                   776666667


Q ss_pred             ccceEEEEEeCCCCCceEEEeeeC----------CeEEEeecCc
Q 018697          313 YEDSVYGLAWSSREPWIFASLSYD----------GRVVVESVKP  346 (351)
Q Consensus       313 ~~~~v~~~~~~~~~~~~l~s~~~d----------g~v~vw~~~~  346 (351)
                      |...+.+++|+|||+ +|++++.+          +.|++||+..
T Consensus       419 ~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          419 REAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             SSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             CCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCC
Confidence            888899999999999 66666654          4899999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=4.5e-21  Score=175.60  Aligned_cols=275  Identities=13%  Similarity=0.029  Sum_probs=189.9

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      ...+..+.+++|+.+++.+..   .++.+.+|.+..  +.  ...+..|. ..+..++|+|+ +.++++ ...+.+...+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~---~~g~~~lw~~~~--g~--~~~lt~~~~~~~~~~~~spd-~~l~~~-~~~~g~~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGF---SEGSVNAYLYDG--GE--TVKLNREPINSVLDPHYGVG-RVILVR-DVSKGAEQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEE---ETTEEEEEEEET--TE--EEECCSSCCSEECEECTTCS-EEEEEE-ECSTTSCCEE
T ss_pred             ccchheeecCCCCCeEEEEEc---cCCceeEEEEcC--CC--cEeeecccccccccccCCCC-eEEEEe-ccCCCCcceE
Confidence            345677778899999998753   367888999733  32  24455566 68999999998 444443 1112345567


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      +|.+....      ..... .+..+ ..+...+|+|+++.++++++.++.+.+||+.++.. ..+...       ...++
T Consensus        92 l~~~~~~~------~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~l~~~-------~~~~~  155 (582)
T 3o4h_A           92 LFKVNTSR------PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RELARL-------PGFGF  155 (582)
T ss_dssp             EEEEETTS------TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EEEEEE-------SSCEE
T ss_pred             EEEEeccC------CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EEeecC-------CCceE
Confidence            76665100      11111 22222 23446689999987677776666677999986432 222211       12788


Q ss_pred             EECCCCCcEEEeecC----CeEEEEEcccCCcCceee-cce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCccee
Q 018697          175 AWDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQ  246 (351)
Q Consensus       175 ~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~  246 (351)
                      +|+|||+.|++++.+    ..|++||+.+++.. .+. ... +..++|+|||+ .|+++..++  .|++||+.. ++.. 
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~-~~~~-  231 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRD-GSVE-  231 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTT-CCEE-
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCC-CcEE-
Confidence            999999999988766    78999999987754 333 222 89999999999 677788888  899999986 5444 


Q ss_pred             EeeCCCCceeEEE--------ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018697          247 ELPGHTHWTWAVC--------CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (351)
Q Consensus       247 ~~~~~~~~v~~~~--------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (351)
                      .+..|...+..+.        |+|+| .++++++.|+.+++|++ .                   .. ..   .+...|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g-------------------~~-~~---~~~~~v~  286 (582)
T 3o4h_A          232 DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G-------------------ER-VE---APQGNHG  286 (582)
T ss_dssp             ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T-------------------EE-EC---CCSSEEE
T ss_pred             EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C-------------------Ce-ec---cCCCceE
Confidence            6777888888888        99999 99999999999999999 3                   11 11   1235688


Q ss_pred             EEEeCCCCCceEEEeeeCC---eEEEeecCc
Q 018697          319 GLAWSSREPWIFASLSYDG---RVVVESVKP  346 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~~~dg---~v~vw~~~~  346 (351)
                      +++|+ +++ ++++++.+.   .+.+|+...
T Consensus       287 ~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          287 RVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred             EEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence            99999 887 777777764   467777653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=1.5e-19  Score=155.62  Aligned_cols=251  Identities=8%  Similarity=0.034  Sum_probs=163.9

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEE-EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELI-CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      .+.+++++..++++......++.+.+|++....+.+. ......+......+++  +++.|+++   ...++.|.+|++.
T Consensus        54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~---~~~~~~v~~~~~~  128 (361)
T 3scy_A           54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA---NYSGGSITVFPIG  128 (361)
T ss_dssp             SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE---ETTTTEEEEEEBC
T ss_pred             eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE---ECCCCEEEEEEeC
Confidence            3567788877777654322458999999998744443 2334445667778888  78777776   3578899999987


Q ss_pred             cccCCCCCCcceeeeee-----------eccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC------Cccc--c
Q 018697          100 ELYGQLNSPQLERIAAL-----------DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK------NAQV--Q  160 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~------~~~~--~  160 (351)
                      ...      ....+...           +.+...+.+++|+|+++.++++...++.|.+|++.....      ....  .
T Consensus       129 ~~g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          129 QDG------ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             TTS------CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             CCC------cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            311      11111111           112234688999999996455545688999999985432      1100  0


Q ss_pred             cccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcC--ceee--cc--e-eEEEEcCCCCCcEEEEecC-CC
Q 018697          161 SKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKT--NSIE--HA--H-VRNVDYDTKKKHLLVTAAD-ES  231 (351)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~~--~~--~-v~~~~~~~~~~~~l~~~~~-dg  231 (351)
                      ..........+..++|+|+++++++++ .++.|.+||+.+++..  ..+.  ..  . +..++|+|+|++++++... ++
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence            000111223577899999999888877 6899999999866431  1121  11  1 6799999999954455555 68


Q ss_pred             eEEEEecccC-Cc--ceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          232 GIHLWDLRML-KA--PIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       232 ~i~i~d~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                      .|.+|++... +.  .+..+.. ...+..++|+|+| ++|++++ .++.|.+|++..
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEEC
Confidence            9999999621 22  3344444 5578899999999 7777666 678999976653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=5.5e-21  Score=186.18  Aligned_cols=254  Identities=14%  Similarity=0.077  Sum_probs=187.4

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-  118 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-  118 (351)
                      .++.+.+|.+...+...  ..+..|. .+...+|+|+++.|+.+     .++.|.+|++.         .. .+..+.. 
T Consensus       222 ~dg~~~l~~~~~~g~~~--~~l~~~~-~~~~~~~SpDG~~la~~-----~~~~i~~~d~~---------~~-~l~~l~~~  283 (1045)
T 1k32_A          222 IDGFGQIYSTDLDGKDL--RKHTSFT-DYYPRHLNTDGRRILFS-----KGGSIYIFNPD---------TE-KIEKIEIG  283 (1045)
T ss_dssp             TTSSCEEEEEETTSCSC--EECCCCC-SSCEEEEEESSSCEEEE-----ETTEEEEECTT---------TC-CEEECCCC
T ss_pred             ccCceEEEEEeCCCCcc--eEecCCC-CcceeeEcCCCCEEEEE-----eCCEEEEecCC---------ce-EeeeeccC
Confidence            34556667666544322  2333444 46678999999988875     57899999974         11 1223322 


Q ss_pred             ----------cccceeEEEec-CCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc-ceeeeEECCCCCcEEEe
Q 018697          119 ----------HVGKINCVLWW-SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH-YLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       119 ----------h~~~v~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~  186 (351)
                                |...+.+++|+ |+|+. +++++ ++.|.+|++..+.. ..+     ..+.. .+..++|+ +++.++.+
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~-~~~-----~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          284 DLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYV-LKV-----PEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             CCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBE-EEC-----SCCSCEEEEEECSS-SEEEEEEE
T ss_pred             cccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCce-EEc-----cCCCcceEEeeeEc-CCCeEEEE
Confidence                      45579999999 99995 33334 78999999875431 111     12334 78899999 99999998


Q ss_pred             ecCCeEE-EEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          187 TCESSVQ-FWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       187 ~~d~~i~-iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      +.++.+. +||+.+++......... +..++|+|+|+ .|++++.++.|++||+.+ ++....+..|...+..++|+|+|
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTS
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCC
Confidence            8888888 99988765432222112 99999999999 788899999999999987 55566666899999999999999


Q ss_pred             CCeEEEeeCC----------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          265 DGFILSAGTD----------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       265 ~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                       ++|++++.+          +.|++||+..                   ++ +..+..|...+..++|+|+|+ .|+.++
T Consensus       433 -~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------------------g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s  490 (1045)
T 1k32_A          433 -RFIAYGFPLKHGETDGYVMQAIHVYDMEG-------------------RK-IFAATTENSHDYAPAFDADSK-NLYYLS  490 (1045)
T ss_dssp             -CEEEEEEEECSSTTCSCCEEEEEEEETTT-------------------TE-EEECSCSSSBEEEEEECTTSC-EEEEEE
T ss_pred             -CeEEEEecCccccccCCCCCeEEEEECCC-------------------Cc-EEEeeCCCcccCCceEcCCCC-EEEEEe
Confidence             888877664          3899999987                   55 566777877889999999999 788888


Q ss_pred             eCCeEEEeec
Q 018697          335 YDGRVVVESV  344 (351)
Q Consensus       335 ~dg~v~vw~~  344 (351)
                      .++...+|+.
T Consensus       491 ~~~~~~~~~~  500 (1045)
T 1k32_A          491 YRSLDPSPDR  500 (1045)
T ss_dssp             SCCCCCEECS
T ss_pred             cccCCcCcch
Confidence            8777777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1e-19  Score=155.71  Aligned_cols=248  Identities=8%  Similarity=0.077  Sum_probs=166.5

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      +.+++++. +++... ...++.|.+|++.... ......+..+...+..++|+|+++.|+++   +..++.|.+|++.. 
T Consensus        45 ~a~spdg~-l~~~~~-~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~~l~~~---~~~~~~v~v~~~~~-  117 (347)
T 3hfq_A           45 LALSAKDC-LYSVDK-EDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQLVYSA---NYHKGTAEVMKIAA-  117 (347)
T ss_dssp             EEECTTCE-EEEEEE-ETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTTEEEEE---ETTTTEEEEEEECT-
T ss_pred             EEEccCCe-EEEEEe-cCCCceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCCEEEEE---eCCCCEEEEEEeCC-
Confidence            55677776 555432 1345789999985432 22334445677889999999999988887   35788999999862 


Q ss_pred             cCCCCCCcceeeeeeec---------cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697          102 YGQLNSPQLERIAALDA---------HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~---------h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                           ......+..+..         +...+.+++|+|+++ ++++...++.|.+|++............. ......+.
T Consensus       118 -----~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~  190 (347)
T 3hfq_A          118 -----DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT-MEAGFGPR  190 (347)
T ss_dssp             -----TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE-CCTTCCEE
T ss_pred             -----CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE-cCCCCCCc
Confidence                 112233333322         123488999999999 55555668899999998322222111101 01112567


Q ss_pred             eeEECCCCCcEEEe-ecCCeEEEEEccc--CCc--Cceee---cc----e-eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          173 GGAWDPHDVNAVAA-TCESSVQFWDLRS--MGK--TNSIE---HA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       173 ~~~~~~~~~~l~~~-~~d~~i~iwd~~~--~~~--~~~~~---~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                      .++|+|++++++++ ..++.|.+|++..  ++.  ...+.   ..    . +..++|+|+|++++++...++.|.+||+.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            89999999977765 4688999999885  321  11111   11    2 78899999999655777778999999987


Q ss_pred             cCC--cceeEeeCCCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCC
Q 018697          240 MLK--APIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVST  284 (351)
Q Consensus       240 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~  284 (351)
                      ..+  ..+..+..+...+..++|+|+| ++|++++. ++.|.+|++..
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECT
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeC
Confidence            322  3455566666778999999999 77777665 58999996653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.2e-21  Score=182.07  Aligned_cols=234  Identities=8%  Similarity=-0.019  Sum_probs=159.8

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc---ceeEEEecCCCCCcEEEEec----
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG---KINCVLWWSSGRHDKLVSID----  141 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~----  141 (351)
                      .+++|+|+++ +++.    +.|+.|++||+.         .++....+..|..   .+.+++|+|||+. ++.++.    
T Consensus        19 ~~~~~s~dg~-~~~~----~~d~~i~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~   83 (719)
T 1z68_A           19 FFPNWISGQE-YLHQ----SADNNIVLYNIE---------TGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKL   83 (719)
T ss_dssp             CCCEESSSSE-EEEE----CTTSCEEEEESS---------SCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEEC
T ss_pred             CccEECCCCe-EEEE----cCCCCEEEEEcC---------CCcEEEEEccccccccceeeEEECCCCCe-EEEEecCcee
Confidence            4789999995 4443    468999999998         4555555555543   3899999999996 443333    


Q ss_pred             -----CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---e--
Q 018697          142 -----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---V--  211 (351)
Q Consensus       142 -----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v--  211 (351)
                           ++.|++||+.++........      ...+..++|+|||+.|+.+. ++.|++||+.+++.......++   +  
T Consensus        84 ~~~s~~~~i~~~d~~~g~~~~~~~l------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~  156 (719)
T 1z68_A           84 WRYSYTATYYIYDLSNGEFVRGNEL------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN  156 (719)
T ss_dssp             SSSCEEEEEEEEETTTTEECCSSCC------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE
T ss_pred             EEeecceEEEEEECCCCccccceec------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc
Confidence                 68999999987543110101      12688899999999998875 7899999998876543322222   2  


Q ss_pred             ---------------EEEEcCCCCCcEEEEecCCC----------------------------------eEEEEecccCC
Q 018697          212 ---------------RNVDYDTKKKHLLVTAADES----------------------------------GIHLWDLRMLK  242 (351)
Q Consensus       212 ---------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~  242 (351)
                                     .+++|+|||+ .|++++.|.                                  .|++||+.. +
T Consensus       157 g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~  234 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-P  234 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-H
T ss_pred             ccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-C
Confidence                           4899999999 566665431                                  788999875 3


Q ss_pred             cce--------eEeeCCCCceeEEEecCCCCCeEEEeeCC----CeEEEEE----cCCCCCCCCCCcccccCCccccccc
Q 018697          243 API--------QELPGHTHWTWAVCCNPEYDGFILSAGTD----STVNLWL----VSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       243 ~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      +..        ..+.+|...+..++|+|++ .++++....    ..|.+||    ...                   +++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------g~~  294 (719)
T 1z68_A          235 AYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQT-------------------WDC  294 (719)
T ss_dssp             HHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSS-------------------EEC
T ss_pred             CccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCC-------------------Cce
Confidence            322        1234688889999999998 777774432    2488889    665                   444


Q ss_pred             ceee----ccccceEE-----EEEeCCCCCceEE-EeeeCC--eEEEeecCc
Q 018697          307 LNSY----SDYEDSVY-----GLAWSSREPWIFA-SLSYDG--RVVVESVKP  346 (351)
Q Consensus       307 ~~~~----~~~~~~v~-----~~~~~~~~~~~l~-s~~~dg--~v~vw~~~~  346 (351)
                      ...+    ..|...+.     .+.|+|+|+.+++ +...+|  .|.+|++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence            4444    35666666     7899999985444 333455  466666643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.2e-20  Score=158.91  Aligned_cols=224  Identities=8%  Similarity=0.052  Sum_probs=157.1

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeecccc--ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVG--KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      +.++.|.+||+.         +.+.+..+.....  .+..++|+|+++.+++++..++.|.+||+.++.....+......
T Consensus         8 ~~~~~v~~~d~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            8 ARPDKLVVIDTE---------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             ETTTEEEEEETT---------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             CCCCeEEEEECC---------CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            688999999987         5666666643322  57899999999865555567899999999875543322211100


Q ss_pred             CcccceeeeEECCCCCcEEEee------------cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCe
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT------------CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                      .+...+.+++|+|+++.++++.            .++.|.+||+.+++....+..+. +..++|+|+++. ++++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK-LYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC-EEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE-EEEe--CCe
Confidence            1223577899999999988886            57999999999887776666444 888999999984 5555  688


Q ss_pred             EEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-----------------------eEEEEEcCCCCCCC
Q 018697          233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-----------------------TVNLWLVSTSNHDE  289 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~  289 (351)
                      |++||+.+ .+.+..+..+.. ...+.|+|++..+++++..++                       .|.+||...     
T Consensus       156 i~~~d~~~-~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-----  228 (337)
T 1pby_B          156 LHVMDPEA-GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-----  228 (337)
T ss_dssp             EEEEETTT-TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-----
T ss_pred             EEEEECCC-CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC-----
Confidence            99999987 555666654331 123478999933333333333                       367888887     


Q ss_pred             CCCcccccCCcccccccc-eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          290 LPSESLVESPNQRANSLL-NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                                    ++.. ..+..+...+.+++|+|+++ +++++  ++.|++||+.+.
T Consensus       229 --------------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          229 --------------GEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             --------------CCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT
T ss_pred             --------------CCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCC
Confidence                          4432 23344556688999999998 56665  689999998753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=8.2e-19  Score=149.93  Aligned_cols=229  Identities=9%  Similarity=0.022  Sum_probs=155.8

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      ..++...++.+    ..++.|.+|++...  ... ..+..+. ..+..++|+|+++.++++   +..++.|.+||+.   
T Consensus         7 ~~~~~~~~v~~----~~~~~v~~~d~~~~--~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~---~~~~~~i~~~d~~---   73 (349)
T 1jmx_B            7 LKAGHEYMIVT----NYPNNLHVVDVASD--TVY-KSCVMPDKFGPGTAMMAPDNRTAYVL---NNHYGDIYGIDLD---   73 (349)
T ss_dssp             CCTTCEEEEEE----ETTTEEEEEETTTT--EEE-EEEECSSCCSSCEEEECTTSSEEEEE---ETTTTEEEEEETT---
T ss_pred             ccCCCEEEEEe----CCCCeEEEEECCCC--cEE-EEEecCCCCCCceeEECCCCCEEEEE---eCCCCcEEEEeCC---
Confidence            34444444443    24788999887653  222 2233222 267899999999877765   3678899999987   


Q ss_pred             CCCCCCcceeeeeeecc------ccceeEEEecCCCCCcEEEEec------------CCcEEEEEcCCCCCCcccccccc
Q 018697          103 GQLNSPQLERIAALDAH------VGKINCVLWWSSGRHDKLVSID------------EENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~------------d~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                            +.+.+..+..+      ...+.+++|+|+++. +++++.            ++.|.+||+.++.......... 
T Consensus        74 ------t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  145 (349)
T 1jmx_B           74 ------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-  145 (349)
T ss_dssp             ------TTEEEEEEESCCSTTEEEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred             ------CCcEEEEEEcccccccccccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence                  45555555432      233788999999996 444443            4899999998643222111111 


Q ss_pred             cCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-----------------------------------
Q 018697          165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-----------------------------------  209 (351)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------------------------  209 (351)
                        +...+.+++|+|+++ +++++  +.|.+||+.+++....+...                                   
T Consensus       146 --~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          146 --MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             --CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             --CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence              122588899999999 66654  34999999877654333211                                   


Q ss_pred             -----------------------------------eeEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC
Q 018697          210 -----------------------------------HVRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH  253 (351)
Q Consensus       210 -----------------------------------~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  253 (351)
                                                         .+..++|+| +++ +++++  ++.|.+||+++ .+.+..+.. ..
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~  295 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQ-RKLIKAANL-DH  295 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTT-TEEEEEEEC-SS
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECcc-CeEEEEEcC-CC
Confidence                                               034667789 998 56666  88999999987 556666653 34


Q ss_pred             ceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       254 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+.+++|+|++ .+|++++.++.|++||..+
T Consensus       296 ~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          296 TYYCVAFDKKG-DKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             CCCEEEECSSS-SCEEEESBSSEEEEEETTT
T ss_pred             CccceEECCCC-CEEEEecCCCeEEEEeccc
Confidence            57899999999 7777788899999999988

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.4e-20  Score=175.02  Aligned_cols=280  Identities=11%  Similarity=0.081  Sum_probs=176.3

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCc---ceeeeeeCCCCCceEEEEeec-----CCcce
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPN---EIWDLSSCPFDQRIFSTVFST-----GESYG   92 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~~~~~~~-----~~d~~   92 (351)
                      ...+.+++ +++...    .++.+++|++......   ..+.+|..   .|.+++|||||+.|+.+....     +.++.
T Consensus        20 ~~~~s~dg-~~~~~~----~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWISGQ-EYLHQS----ADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESSSS-EEEEEC----TTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECCCC-eEEEEc----CCCCEEEEEcCCCcEE---EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence            34556677 455443    4778999988764321   22223333   389999999999998864111     12689


Q ss_pred             EEEEEcccccCCCCCCcceee--eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc----ccC
Q 018697           93 AAIWQIPELYGQLNSPQLERI--AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ----SSG  166 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~  166 (351)
                      |++||+.         ..+.+  ..+   ...+..++|+|||+. + +...++.|++|++.++..........    ..+
T Consensus        92 i~~~d~~---------~g~~~~~~~l---~~~~~~~~~SPDG~~-l-a~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           92 YYIYDLS---------NGEFVRGNEL---PRPIQYLCWSPVGSK-L-AYVYQNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             EEEEETT---------TTEECCSSCC---CSSBCCEEECSSTTC-E-EEEETTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             EEEEECC---------CCccccceec---CcccccceECCCCCE-E-EEEECCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence            9999987         33331  122   246889999999995 3 33357899999998654322111110    001


Q ss_pred             ccc---------ceeeeEECCCCCcEEEeecCC----------------------------------eEEEEEcccCCcC
Q 018697          167 MLH---------YLSGGAWDPHDVNAVAATCES----------------------------------SVQFWDLRSMGKT  203 (351)
Q Consensus       167 ~~~---------~v~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~  203 (351)
                      +..         ...+++|+|||+.|++++.|.                                  .|++||+.+++..
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence            111         125899999999999887542                                  7889999887642


Q ss_pred             --cee------e-cce-eEEEEcCCCCCcEEEEecCC----CeEEEEe----cccCCcceeEe----eCCCCcee-----
Q 018697          204 --NSI------E-HAH-VRNVDYDTKKKHLLVTAADE----SGIHLWD----LRMLKAPIQEL----PGHTHWTW-----  256 (351)
Q Consensus       204 --~~~------~-~~~-v~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~----~~~~~~v~-----  256 (351)
                        ..+      . ... +..++|+||++ ++++....    ..|.+||    ..+ ++....+    ..|...+.     
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  315 (719)
T 1z68_A          238 GPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVS  315 (719)
T ss_dssp             CCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCC
T ss_pred             ceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCC
Confidence              111      1 122 89999999986 66664322    3588889    654 3333333    46777776     


Q ss_pred             EEEecCCCCCeEE-EeeCCC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEe
Q 018697          257 AVCCNPEYDGFIL-SAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       257 ~~~~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  333 (351)
                      .+.|+|+|+.+++ +...++  .|.+||+..                   ++ ...+..+...+..+.++ +++.+++++
T Consensus       316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-------------------~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~  374 (719)
T 1z68_A          316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-------------------EN-AIQITSGKWEAINIFRV-TQDSLFYSS  374 (719)
T ss_dssp             CCEECTTSSCEEEEEECTTSCEEEEEESSCS-------------------TT-CEECSCSSSCEEEEEEE-CSSEEEEEE
T ss_pred             ccEECCCCCeEEEEEEccCCceEEEEEECCC-------------------Cc-eEecccCceEEEEEEEE-eCCEEEEEE
Confidence            8999999933333 354566  455666654                   33 34454555557777777 777555555


Q ss_pred             ee----CCeEEEeecC
Q 018697          334 SY----DGRVVVESVK  345 (351)
Q Consensus       334 ~~----dg~v~vw~~~  345 (351)
                      ..    ++.+++|.++
T Consensus       375 ~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          375 NEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SCGGGCTTCBEEEEEE
T ss_pred             ecCCCCCceEEEEEEe
Confidence            44    5888999875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=3e-18  Score=145.44  Aligned_cols=245  Identities=9%  Similarity=0.040  Sum_probs=174.9

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCc------------------------ceEEEEEcccccCCCCCCcceeeeeee-cc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGES------------------------YGAAIWQIPELYGQLNSPQLERIAALD-AH  119 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h  119 (351)
                      -+.+.+++++|+++.+++.    ..+                        +.|.+||..         +++.+..+. .+
T Consensus        23 l~~v~~va~d~~G~l~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---------~g~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFH----RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN---------NAEILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEE----CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT---------TCCEEEEECTTT
T ss_pred             cCCceEEEECCCCCEEEEe----CCCCeEEeeccCcceeecccccccccCCcEEEEECC---------CCeEEeccCCCc
Confidence            3678999999998777664    333                        468999976         445544443 34


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-----ccCcccceeeeEECC-CCCcEEEee-cCCeE
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-----SSGMLHYLSGGAWDP-HDVNAVAAT-CESSV  192 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i  192 (351)
                      -.....++++|++. ++++...++.|++|+..........+...     ..++.....+++++| ++..+++.+ .++.|
T Consensus        90 ~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            45788999999998 45555778999999986432122211110     023344688999999 666666665 68999


Q ss_pred             EEEEcccCCcCceee---------cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEE
Q 018697          193 QFWDLRSMGKTNSIE---------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAV  258 (351)
Q Consensus       193 ~iwd~~~~~~~~~~~---------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~  258 (351)
                      ++|| .+++.+..+.         ..+   +..++++|++..++++...++.|++||..+ ++.+..+.  .+...+..+
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTTCEEEE
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCCCccee
Confidence            9999 4455554442         112   889999999444888888999999999985 55666664  456678899


Q ss_pred             EecCCCCCeEEE-------eeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee---ccccceEEEEEeCCCCCc
Q 018697          259 CCNPEYDGFILS-------AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY---SDYEDSVYGLAWSSREPW  328 (351)
Q Consensus       259 ~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~  328 (351)
                      +|+| + ..+.+       ...+..|++||...                   ++.+..+   ..+...+.+++++|+|. 
T Consensus       247 ~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~-------------------g~~~~~~~~~~~~~~~p~~ia~~~dG~-  304 (329)
T 3fvz_A          247 SYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSS-------------------GEIIDVFKPVRKHFDMPHDIVASEDGT-  304 (329)
T ss_dssp             EEET-T-EEEEEECCCCTTCSCCCCEEEEETTT-------------------CCEEEEECCSSSCCSSEEEEEECTTSE-
T ss_pred             eecC-C-EEEEeCCCEEeccCCCcEEEEEEcCC-------------------CeEEEEEcCCCCccCCeeEEEECCCCC-
Confidence            9999 4 33333       33455899999988                   7777776   35666789999999996 


Q ss_pred             eEEEeeeCCeEEEeecCcc
Q 018697          329 IFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       329 ~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++++...++.|++|++...
T Consensus       305 lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEESSSCCEEEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCcc
Confidence            8999999999999998653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.8e-19  Score=154.46  Aligned_cols=279  Identities=10%  Similarity=0.020  Sum_probs=171.4

Q ss_pred             ecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      ..++|++.++++.... .....+.++++..  +... ....++...+..++|+|+++.|+.+    +.++.|.+||+.  
T Consensus        41 ~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~--g~~~-~lt~~~~~~~~~~~~spdg~~l~~~----~~~~~l~~~d~~--  110 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAF-DGPWNYYLLDLNT--QVAT-QLTEGRGDNTFGGFLSPDDDALFYV----KDGRNLMRVDLA--  110 (388)
T ss_dssp             CCBCTTSCEEEEEECT-TSSCEEEEEETTT--CEEE-ECCCSSCBCSSSCEECTTSSEEEEE----ETTTEEEEEETT--
T ss_pred             ccCCCCCCEEEEEEcC-CCCceEEEEeCCC--CceE-EeeeCCCCCccceEEcCCCCEEEEE----eCCCeEEEEECC--
Confidence            4578899888887531 1122455555543  3322 3334555666678999999999886    467799999998  


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEE--ecCCCCCcEEEE----------------------ecCCcEEEEEcCCCCCCc
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVL--WWSSGRHDKLVS----------------------IDEENIFLWSLDCSNKNA  157 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~~~~----------------------~~d~~v~iwd~~~~~~~~  157 (351)
                             ..+....+..+...+....  ++|++.. ++..                      ..+..|.+||+.++.. .
T Consensus       111 -------~g~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~  181 (388)
T 3pe7_A          111 -------TLEENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-T  181 (388)
T ss_dssp             -------TCCEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-E
T ss_pred             -------CCcceeeeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-E
Confidence                   4444444555555554444  4888884 3221                      1346799999987532 2


Q ss_pred             ccccccccCcccceeeeEECC-CCCcEEEeecC------CeEEEEEcccCCcCceeecc--e-eEEEEcCCCCCcEEEEe
Q 018697          158 QVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE------SSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~  227 (351)
                      .+..     +...+..++|+| +++.|+....+      ..|.++|+..++........  . +..++|+|+|+.+++++
T Consensus       182 ~l~~-----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          182 VILQ-----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEE-----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             Eeec-----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence            2221     223678999999 99988877643      37888887655432222222  2 77889999999554444


Q ss_pred             cCCC----eEEEEecccCCc-ceeEeeCCCCc---eeEEEecCCCCCeEEEe---------eCCCeEEEEEcCCCCCCCC
Q 018697          228 ADES----GIHLWDLRMLKA-PIQELPGHTHW---TWAVCCNPEYDGFILSA---------GTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       228 ~~dg----~i~i~d~~~~~~-~~~~~~~~~~~---v~~~~~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~  290 (351)
                      ..++    .|++||+.+... .+..+..+...   ...+.|+|+| ..|+..         ..+..|.+||+..      
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~------  329 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLYVFNMKN------  329 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEEEEETTT------
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEEEEeccC------
Confidence            4322    399999986321 22222221111   2234799999 555532         4567899999986      


Q ss_pred             CCcccccCCcccccccceeeccccc-----------eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          291 PSESLVESPNQRANSLLNSYSDYED-----------SVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                   ++. ..+..+..           .+.+++|+|||+.+++++..++...||.++
T Consensus       330 -------------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          330 -------------GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             -------------TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             -------------Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                         333 33434433           477889999999555555567777777553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=1.7e-17  Score=137.93  Aligned_cols=239  Identities=11%  Similarity=0.111  Sum_probs=168.5

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee------ccccceeEEEec-CCCCCc
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWW-SSGRHD  135 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~-~~~~~~  135 (351)
                      ++-..+.+++++|++..+++.    ..++.|.+|+..          .+.+..+.      .+...+.++++. +++. +
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~----~~~~~i~~~d~~----------g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVAD----TNNHRIQIFDKE----------GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-I   91 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEE----GGGTEEEEECTT----------SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-E
T ss_pred             CccCCCceEEECCCCCEEEEE----CCCCEEEEECCC----------CcEEEEecccCCCcccccCceEEEEEcCCCe-E
Confidence            455678999999998755553    567899999965          23333332      244578899994 6665 3


Q ss_pred             EEEEe-cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ce---
Q 018697          136 KLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH---  210 (351)
Q Consensus       136 ~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~---  210 (351)
                      +++.. .++.|.+||.. +.....+ ..   .+...+.+++++|+++.+++...++.|.+||.. ++....+.. .+   
T Consensus        92 ~v~~~~~~~~i~~~d~~-g~~~~~~-~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQY-GQFVRKF-GA---TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEF  165 (286)
T ss_dssp             EEEECGGGCEEEEECTT-SCEEEEE-CT---TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSS
T ss_pred             EEEcCCCCCEEEEECCC-CcEEEEe-cC---ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCC
Confidence            44443 37899999944 3322211 11   123367899999999866666678999999965 444444432 12   


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--CCceeEEEecCCCCCeEEEeeCCC-eEEEEEcCCCCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNH  287 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~  287 (351)
                      +..++++|++. ++++...++.|++||..  ++.+..+..+  ...+..++++|+| .++++...++ .|.+||..    
T Consensus       166 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~----  237 (286)
T 1q7f_A          166 PNGVVVNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD----  237 (286)
T ss_dssp             EEEEEECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT----
T ss_pred             cEEEEECCCCC-EEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC----
Confidence            89999999997 78878888999999975  4455666433  3578999999999 8888887776 99999964    


Q ss_pred             CCCCCcccccCCcccccccceeecccc--ceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          288 DELPSESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                                      ++.+..+..+.  ..+.+++++|+|. ++++ +.|+.|++|++....
T Consensus       238 ----------------g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          238 ----------------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ----------------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCC
T ss_pred             ----------------CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccccc
Confidence                            45555554432  2478999999997 6777 569999999986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=9.7e-18  Score=144.44  Aligned_cols=246  Identities=8%  Similarity=-0.036  Sum_probs=153.8

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCce-EEEEe------ecC----C
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRI-FSTVF------STG----E   89 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~------~~~----~   89 (351)
                      .+.+++++..++++..    + .+.+|++...+..........+ +.+..++|+|+++.+ +.++.      .+.    .
T Consensus        44 ~~a~spdg~~l~~~~~----~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           44 WMTFDHERKNIYGAAM----K-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             EEEECTTSSEEEEEEB----T-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             EEEECCCCCEEEEEcc----c-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            4556777777766543    2 7888888632322211111111 346779999999863 33310      000    5


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeee----ccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcC-CCCCCccccccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALD----AHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLD-CSNKNAQVQSKQ  163 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~-~~~~~~~~~~~~  163 (351)
                      ++.+.+|++..        .++....+.    .+...+.+++|+|+|+. ++++ ..++.|++|++. ++.. .......
T Consensus       118 ~g~v~v~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~  187 (365)
T 1jof_A          118 AGYGNVFSVSE--------TGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGEV-ELVGSVD  187 (365)
T ss_dssp             CCEEEEEEECT--------TCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSCE-EEEEEEE
T ss_pred             CceEEEEccCC--------CCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCCCCEEEEEEECCCCCE-EEeeeEe
Confidence            78999999862        122222222    24567899999999985 4444 346899999998 4332 1111111


Q ss_pred             ccCcccceeeeEECCCCCcEEEeec-CCeEEEEEcc--cCCcCc------eeec-----c-------eeEEEE-cCCCCC
Q 018697          164 SSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLR--SMGKTN------SIEH-----A-------HVRNVD-YDTKKK  221 (351)
Q Consensus       164 ~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~------~~~~-----~-------~v~~~~-~~~~~~  221 (351)
                      ...+...+..++|+|+++++++++. ++.|.+|++.  +++...      .+..     .       .+..++ |+|+|+
T Consensus       188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence            0112236889999999999888774 7899999875  344211      1111     1       367899 999999


Q ss_pred             cEEEEecC-CC-----eEEEEecccCCccee---EeeCCCCceeEEEecC---CCCCeEEEeeC-CCeEEEEEcCC
Q 018697          222 HLLVTAAD-ES-----GIHLWDLRMLKAPIQ---ELPGHTHWTWAVCCNP---EYDGFILSAGT-DSTVNLWLVST  284 (351)
Q Consensus       222 ~~l~~~~~-dg-----~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~---~~~~~l~s~~~-dg~i~iwd~~~  284 (351)
                      + |+++.. +.     .|.+|++...++...   ....+...+..++|+|   +| .+|++++. ++.|.+|++..
T Consensus       268 ~-l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          268 Y-MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             E-EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEET
T ss_pred             E-EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCeEEEEEEch
Confidence            4 444443 33     899999963243322   2333555677899999   78 88888876 48999999976

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=2.3e-18  Score=161.86  Aligned_cols=237  Identities=8%  Similarity=0.015  Sum_probs=155.8

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc-----eeEEEecCCCCCcEEEEe
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK-----INCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~~~  140 (351)
                      ....+++|+|+++.+++     + |+.|++|++.         +.+....+..|...     ...+.|||||+. ++.++
T Consensus        17 ~~~~~~~w~~dg~~~~~-----~-~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~-l~~~~   80 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYK-----Q-ENNILVFNAE---------YGNSSVFLENSTFDEFGHSINDYSISPDGQF-ILLEY   80 (740)
T ss_dssp             CCCCCEEECSSSEEEEE-----E-TTEEEEEETT---------TCCEEEEECTTTTTTCCSCCCEEEECTTSSE-EEEEE
T ss_pred             ccccccEECCCCcEEEE-----c-CCcEEEEECC---------CCceEEEEechhhhhhcccccceEECCCCCE-EEEEE
Confidence            45678999999976655     2 8899999998         45555556666532     244789999996 44444


Q ss_pred             cC---------CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-
Q 018697          141 DE---------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       141 ~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      .+         +.+.+||+.++... .+.     .+...+...+|+|||+.|+.+ .++.|++||+.+++.......++ 
T Consensus        81 ~~~~~~r~~~~~~~~~~d~~~~~~~-~l~-----~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           81 NYVKQWRHSYTASYDIYDLNKRQLI-TEE-----RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEEC-CSS-----CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             CCeeeEEEccceEEEEEECCCCcEE-Ecc-----cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCc
Confidence            33         66789999975422 211     233478999999999999887 47899999998876443222122 


Q ss_pred             --e-----------------EEEEcCCCCCcEEEEecCC-C-----------------------------------eEEE
Q 018697          211 --V-----------------RNVDYDTKKKHLLVTAADE-S-----------------------------------GIHL  235 (351)
Q Consensus       211 --v-----------------~~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~i  235 (351)
                        +                 ..+.|+|||+ .|+..+.| +                                   .|++
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence              2                 2489999999 55554321 1                                   5788


Q ss_pred             Eeccc---CCc-ceeEee------CCCCceeEEEecCCCCCeEEEee----CCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          236 WDLRM---LKA-PIQELP------GHTHWTWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       236 ~d~~~---~~~-~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      ||+..   ... ....+.      +|...+..++|+|+| ++++...    .+..|.+||+.+                 
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~t-----------------  294 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDE-----------------  294 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEET-----------------
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCC-----------------
Confidence            88875   321 233343      377889999999999 6555443    234799999987                 


Q ss_pred             cccc----c--ceee--ccccceEE-----EEEeCCCCCceEEEee-eC--CeEEEeecCc
Q 018697          302 RANS----L--LNSY--SDYEDSVY-----GLAWSSREPWIFASLS-YD--GRVVVESVKP  346 (351)
Q Consensus       302 ~~~~----~--~~~~--~~~~~~v~-----~~~~~~~~~~~l~s~~-~d--g~v~vw~~~~  346 (351)
                        ++    +  +..+  ..|...|.     .+.|+|||+.++...+ .+  ..|++|++..
T Consensus       295 --g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          295 --SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             --TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             --CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence              33    1  1222  33444443     7889999995442554 33  4577777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=5.3e-18  Score=157.65  Aligned_cols=251  Identities=10%  Similarity=-0.039  Sum_probs=161.7

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccccee---------EEEec
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKIN---------CVLWW  129 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~  129 (351)
                      ..+.+|...+..++|+++.-.++..  ..+.++...||...         .......+..|...+.         ...|+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~~l~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAP--RPAEAGRATLVRRR---------ADGAEESALPAPWNVRNRVFEYSGFPWAGV   85 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEE--ETTTTTEEEEEEEC---------TTSCEEESSCTTCCBCCCGGGTCCCCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEec--CcccCCcEEEEEEC---------CCCCcceeCCCCccccccccccCCccceee
Confidence            4456789999999999764333332  12567889999864         2233445556655555         56565


Q ss_pred             --CCCCC-cEEEEecCCcEEEEEcC--CCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----------CeEEE
Q 018697          130 --SSGRH-DKLVSIDEENIFLWSLD--CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----------SSVQF  194 (351)
Q Consensus       130 --~~~~~-~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i  194 (351)
                        ||++. +++++..+..|.++++.  .......+.......+...+.+++|+||++.|++++.+          ..|++
T Consensus        86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             CCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             eecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence              99996 34333335667777665  20222222221111134578899999999999988866          58999


Q ss_pred             EEccc------CCcCceee-cce--eEEEEcCCCCCcEEEEecCC--------CeEEEEecccCC---cceeEeeCCCCc
Q 018697          195 WDLRS------MGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLK---APIQELPGHTHW  254 (351)
Q Consensus       195 wd~~~------~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~---~~~~~~~~~~~~  254 (351)
                      ||+.+      ++.. .+. ..+  +..++|+|||+ .|+.++.+        ..|++||+...+   +.......|...
T Consensus       166 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          166 VPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EECCCCccccCCcee-EEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            99987      4432 332 223  88899999999 55555433        479999998313   333334455788


Q ss_pred             eeEEEecCCCCCeEEEeeCCC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce--------EEEEEeCC
Q 018697          255 TWAVCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS--------VYGLAWSS  324 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~  324 (351)
                      +..+.|+|+| +++++++.++  .|.+||...                   ++.......+...        +..++|+|
T Consensus       244 ~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~-------------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~  303 (662)
T 3azo_A          244 IAQAEWAPDG-SLIVATDRTGWWNLHRVDPAT-------------------GAATQLCRREEEFAGPLWTPGMRWFAPLA  303 (662)
T ss_dssp             EEEEEECTTS-CEEEEECTTSSCEEEEECTTT-------------------CCEEESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred             EcceEECCCC-eEEEEECCCCCeEEEEEECCC-------------------CceeecccccccccCccccccCceEeEeC
Confidence            9999999999 6888888888  455555544                   2222222222111        45788999


Q ss_pred             CCCceEEEeeeCCeEEEeec
Q 018697          325 REPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ++. +++++.. +.++||.+
T Consensus       304 ~~~-~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          304 NGL-IAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TSC-EEEEEBS-SSCEEEEE
T ss_pred             CCE-EEEEEEc-CccEEEEE
Confidence            988 8888888 99999944

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=2.9e-17  Score=152.66  Aligned_cols=280  Identities=12%  Similarity=0.023  Sum_probs=169.6

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCccee---------eeeeC--CCCCc-eEEEEe
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW---------DLSSC--PFDQR-IFSTVF   85 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~---------~i~~~--~~~~~-l~~~~~   85 (351)
                      .+..+.++++.  +++.......++...+|.....+ .  ...+..|...+.         ...|+  ||++. |+.+  
T Consensus        25 ~~~~~~~s~~~--~~~~~~~~~~~~~~~l~~~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~--   97 (662)
T 3azo_A           25 RPACVGAVGDE--VWWVAPRPAEAGRATLVRRRADG-A--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT--   97 (662)
T ss_dssp             CCEEEEEETTE--EEEEEEETTTTTEEEEEEECTTS-C--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE--
T ss_pred             ccceeEEcCCe--EEEEecCcccCCcEEEEEECCCC-C--cceeCCCCccccccccccCCccceeeeecCCCeEEEEE--
Confidence            34444444443  33333222445677777764332 2  345566766666         55565  99998 7665  


Q ss_pred             ecCCcceEEEEEcccccCCCCCCcc-eeeeeeec-----cccceeEEEecCCCCCcEEEEecC----------CcEEEEE
Q 018697           86 STGESYGAAIWQIPELYGQLNSPQL-ERIAALDA-----HVGKINCVLWWSSGRHDKLVSIDE----------ENIFLWS  149 (351)
Q Consensus        86 ~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~d----------~~v~iwd  149 (351)
                       ...+..|.++++..        .. .....+..     |...+..++|+|||+. +++++.+          ..|++||
T Consensus        98 -~~~~~~l~~~~~~~--------~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           98 -HFGDQRLYAFEPDA--------PGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             -BTTTCCEEEECTTS--------TTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             -ECCCCeEEEEcCCC--------CCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEE
Confidence             23344455554320        01 22334444     6778899999999996 4444444          5899999


Q ss_pred             cCCC-----CCCcccccccccCcccceeeeEECCCCCcEEEeecC--------CeEEEEEcc-cCC--cCceeecc--e-
Q 018697          150 LDCS-----NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLR-SMG--KTNSIEHA--H-  210 (351)
Q Consensus       150 ~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~--~~~~~~~~--~-  210 (351)
                      +.+.     .....+..    .+...+..++|+|||+.|+.++.+        ..|++||+. ++.  ....+...  . 
T Consensus       168 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          168 LDGSAAADRSAVRELSD----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             TTSTTTTCGGGSEESSC----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             CCCCccccCCceeEEEe----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            9862     12222210    122367889999999999887754        379999998 461  22333322  2 


Q ss_pred             eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeCCCCc---------eeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          211 VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHW---------TWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      +..++|+|+|+ +++++..++  .|.+||+.. ++ ...+..+...         +..++|+|++ .++++++. +.++|
T Consensus       244 ~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l  318 (662)
T 3azo_A          244 IAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVL  318 (662)
T ss_dssp             EEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEE
T ss_pred             EcceEECCCCe-EEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEE
Confidence            89999999999 888888888  566666644 33 3333322221         4678889998 89999988 99999


Q ss_pred             EEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE-EeCCCCCceE-EEeeeCCeEEEee
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL-AWSSREPWIF-ASLSYDGRVVVES  343 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l-~s~~~dg~v~vw~  343 (351)
                      |.+...                  ...+..+..|...+..+ +++  +..++ ++++.+....+|.
T Consensus       319 ~~~d~~------------------~~~~~~l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          319 GILDPE------------------SGELVDAAGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEETT------------------TTEEEECCSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred             EEEECC------------------CCcEEEecCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEE
Confidence            955420                  23356666677777776 554  44344 4444454444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=5.3e-16  Score=145.25  Aligned_cols=250  Identities=10%  Similarity=0.096  Sum_probs=167.0

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      |...+..++||||++.|+.+...+|.+ ..|++||+.         +++..... .....+..++|+|||+. ++.++.+
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~---------tg~~~~~~-~~~~~~~~~~wspDg~~-l~~~~~~  191 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD---------GAKELPDV-LERVKFSCMAWTHDGKG-MFYNAYP  191 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT---------TTEEEEEE-EEEECSCCEEECTTSSE-EEEEECC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC---------CCCCCccc-ccCcccceEEEEeCCCE-EEEEEEC
Confidence            445788999999999998775433332 489999998         44444322 12223678999999996 4444444


Q ss_pred             Cc----------------EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-----CCeEEEEEccc--
Q 018697          143 EN----------------IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS--  199 (351)
Q Consensus       143 ~~----------------v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~--  199 (351)
                      +.                |++|++.++........ ....+...+.++.|+|++++|+.++.     +..|++||+.+  
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~-~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA-EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE-CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEe-ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence            44                99999986542212221 11123335778999999999888764     67899999987  


Q ss_pred             ----CC-cCceeecce--eEEEEcCCCCCcEEEEecCC---CeEEEEecccCCc-ceeEeeCCCC--ceeEEEecCCCCC
Q 018697          200 ----MG-KTNSIEHAH--VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKA-PIQELPGHTH--WTWAVCCNPEYDG  266 (351)
Q Consensus       200 ----~~-~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~  266 (351)
                          +. ....+....  +.. .|+|+|+.+++.+..+   +.|.+||+..... ....+..|..  .+..+.|++++ .
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~  348 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-F  348 (710)
T ss_dssp             SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-E
T ss_pred             cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-E
Confidence                43 344444222  333 4788888555554433   4799999876331 2355555544  68889999777 8


Q ss_pred             eEEEeeCCCe--EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee---eCCeEEE
Q 018697          267 FILSAGTDST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS---YDGRVVV  341 (351)
Q Consensus       267 ~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~v~v  341 (351)
                      ++++...|+.  |.+||+..                   ++.+..+..+...+..++++|++..++++.+   ..+.|++
T Consensus       349 lv~~~~~~g~~~l~~~~~~~-------------------g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  409 (710)
T 2xdw_A          349 LVLCYLHDVKNTLQLHDLAT-------------------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (710)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------------------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             EEEEEEECCEEEEEEEECCC-------------------CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence            8889888885  55566655                   5556666667778899999999874554443   3578999


Q ss_pred             eecCc
Q 018697          342 ESVKP  346 (351)
Q Consensus       342 w~~~~  346 (351)
                      ||+.+
T Consensus       410 ~d~~t  414 (710)
T 2xdw_A          410 CDLTK  414 (710)
T ss_dssp             EETTS
T ss_pred             EECCC
Confidence            99864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.8e-17  Score=143.89  Aligned_cols=247  Identities=9%  Similarity=-0.045  Sum_probs=155.5

Q ss_pred             EeeecCCcceee-----eeeCCCCCceEEEEeecCCcc--eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC
Q 018697           59 EGLFSHPNEIWD-----LSSCPFDQRIFSTVFSTGESY--GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS  131 (351)
Q Consensus        59 ~~~~~h~~~v~~-----i~~~~~~~~l~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  131 (351)
                      ..+..|......     .+|+||++.|+.+.   ..++  .|.+||+.         ..+.......+...+..+.|+|+
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~---~~~g~~~l~~~d~~---------~g~~~~lt~~~~~~~~~~~~spd   91 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGG---AFDGPWNYYLLDLN---------TQVATQLTEGRGDNTFGGFLSPD   91 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEE---CTTSSCEEEEEETT---------TCEEEECCCSSCBCSSSCEECTT
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEE---cCCCCceEEEEeCC---------CCceEEeeeCCCCCccceEEcCC
Confidence            344556655555     89999999998873   3355  47777776         45555555566666667889999


Q ss_pred             CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceee--eEECCCCCcEEEe----------------------e
Q 018697          132 GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG--GAWDPHDVNAVAA----------------------T  187 (351)
Q Consensus       132 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~----------------------~  187 (351)
                      ++. ++.++.++.|++||+.++.... +....    ...+..  ..++|++..++..                      .
T Consensus        92 g~~-l~~~~~~~~l~~~d~~~g~~~~-~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           92 DDA-LFYVKDGRNLMRVDLATLEENV-VYQVP----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             SSE-EEEEETTTEEEEEETTTCCEEE-EEECC----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             CCE-EEEEeCCCeEEEEECCCCccee-eeech----hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            995 5555667899999999754322 21111    112322  3348888877643                      2


Q ss_pred             cCCeEEEEEcccCCcCceeecce-eEEEEcCC-CCCcEEEEecC------CCeEEEEecccCCcceeEeeCCC--CceeE
Q 018697          188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT-KKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHT--HWTWA  257 (351)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~--~~v~~  257 (351)
                      .+..|.+||+.+++......... +..++|+| +++ .++....      ...|.++|... . ....+..+.  ..+..
T Consensus       166 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEE
T ss_pred             CcceEEEEECCCCceEEeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCccccc
Confidence            34689999999886544443333 88999999 998 4554443      33778888764 3 344554444  35788


Q ss_pred             EEecCCCCCeEEE-eeCCC----eEEEEEcCCCCCCCCCCcccccCCcccccc--cceeeccccce---EEEEEeCCCCC
Q 018697          258 VCCNPEYDGFILS-AGTDS----TVNLWLVSTSNHDELPSESLVESPNQRANS--LLNSYSDYEDS---VYGLAWSSREP  327 (351)
Q Consensus       258 ~~~~~~~~~~l~s-~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---v~~~~~~~~~~  327 (351)
                      +.|+|+| ..|+. +..++    .|.+||+..                   ++  .+..+..+...   ...+.|+|+|+
T Consensus       243 ~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~-------------------g~~~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          243 EFWVPDG-SALVYVSYLKGSPDRFIYSADPET-------------------LENRQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             EEECTTS-SCEEEEEEETTCCCEEEEEECTTT-------------------CCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             ceECCCC-CEEEEEecCCCCCcceEEEEecCC-------------------CceEEEEcCCCceeeeecCCCCeEccCCC
Confidence            9999999 65544 33322    399999987                   33  23233321111   12347999998


Q ss_pred             ceEEEe--------eeCCeEEEeecCc
Q 018697          328 WIFASL--------SYDGRVVVESVKP  346 (351)
Q Consensus       328 ~~l~s~--------~~dg~v~vw~~~~  346 (351)
                      .++++.        ..+..|++||+..
T Consensus       303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          303 DAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             CC------------CCCCEEEEEETTT
T ss_pred             cceeEeeeccccccCCCCEEEEEeccC
Confidence            544433        4567899999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=1.4e-17  Score=144.75  Aligned_cols=277  Identities=8%  Similarity=0.018  Sum_probs=165.6

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcce-eeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEI-WDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v-~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      ..+.++|++.++++.... .....++++++..  +..  ..+..+...+ ..+.|+|+++.|+.+    +.++.|.+|++
T Consensus        39 ~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~--~~~--~~l~~~~~~~~~~~~~spdg~~l~~~----~~~~~l~~~d~  109 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDF-DGNRNYYLLNLET--QQA--VQLTEGKGDNTFGGFISTDERAFFYV----KNELNLMKVDL  109 (396)
T ss_dssp             TSCCBCTTSCEEEEEECT-TSSCEEEEEETTT--TEE--EECCCSSCBCTTTCEECTTSSEEEEE----ETTTEEEEEET
T ss_pred             ecCcCCCCCCEEEEEEec-CCCceEEEEECCC--CcE--EEeecCCCCccccceECCCCCEEEEE----EcCCcEEEEEC
Confidence            345577888888776432 2234566666543  322  2333344443 348899999999876    35668999998


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeE-------------------EEecCCCCCcEEEE----ecCCcEEEEEcCCCCC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINC-------------------VLWWSSGRHDKLVS----IDEENIFLWSLDCSNK  155 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~~~~~----~~d~~v~iwd~~~~~~  155 (351)
                      .         ..+.......+......                   +.|+|+++.+++..    ..+..|++||+.++..
T Consensus       110 ~---------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          110 E---------TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             T---------TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             C---------CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            7         33333333333332222                   35788887533332    3467899999986442


Q ss_pred             CcccccccccCcccceeeeEECC-CCCcEEEeecC------CeEEEEEcccCCcCceeec--ce-eEEEEcCCCCCcEEE
Q 018697          156 NAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCE------SSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLLV  225 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l~  225 (351)
                      . .+.     .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.......  .. +..++|+|+++.+++
T Consensus       181 ~-~~~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          181 E-VIH-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             E-EEE-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             E-eec-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEE
Confidence            2 222     1233688899999 78877766543      4688889876543222221  22 888999999985444


Q ss_pred             EecCC----CeEEEEecccCCcceeEeeCCCCceeEEEecC-CCCCeEEEee----------------CCCeEEEEEcCC
Q 018697          226 TAADE----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP-EYDGFILSAG----------------TDSTVNLWLVST  284 (351)
Q Consensus       226 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~----------------~dg~i~iwd~~~  284 (351)
                      ++..+    +.|++||+.+ ++. ..+..... .. +.|+| +| .+++.++                .+..|.+||+..
T Consensus       255 ~~~~~~~~~~~l~~~d~~~-g~~-~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPET-LEN-EEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEEETTTCCEEEEEECTTT-CCE-EEEEECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             EecCCCCccceEEEEECCC-CCe-EEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            43322    4499999976 432 22221222 33 88999 99 6777654                346899999986


Q ss_pred             CCCCCCCCcccccCCcccccccceeeccccc-----------eEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSYSDYED-----------SVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                         ++. ..+..+..           .+..++|+|+|+.++++...++...+|.++
T Consensus       330 -------------------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          330 -------------------KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             -------------------TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             -------------------Cce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                               332 23333332           256688999998444444456666666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=3e-16  Score=134.72  Aligned_cols=276  Identities=8%  Similarity=-0.019  Sum_probs=174.4

Q ss_pred             CcceEEEeeeee--CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEEEEc
Q 018697           27 DHTSFLTGTLSL--KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQI   98 (351)
Q Consensus        27 ~~~~~~~g~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~vw~~   98 (351)
                      +..++++.....  ..++.+++|+...  .++. ..+..+..+  .++|+|++++++++...      |..++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t--~~~~-~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTN--GKFL-GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTT--CCEE-EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCC--CeEE-EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            455666654321  1356888887543  3333 444444444  89999999999887421      124678999998


Q ss_pred             ccccCCCCCCcceeeeeeecc------ccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccccccccCcccce
Q 018697           99 PELYGQLNSPQLERIAALDAH------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .         +.+.+.++...      ......++++|+|++++++... ++.|.+||+.+.+....+....      ..
T Consensus        89 ~---------t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------~~  153 (361)
T 2oiz_A           89 D---------KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA------GC  153 (361)
T ss_dssp             T---------TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT------TE
T ss_pred             c---------CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC------Cc
Confidence            7         55666665432      2456789999999974444443 6899999999753322201111      12


Q ss_pred             eeeEECCCC-CcEEEeecCCeEEEEEccc-CCcCc------eeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          172 SGGAWDPHD-VNAVAATCESSVQFWDLRS-MGKTN------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       172 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-~~~~~------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      ..+.+.|++ ..+++.+.||.+.+|++.. ++...      .+.... ...+.++|++. .++..+.++.+.++|+....
T Consensus       154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~  232 (361)
T 2oiz_A          154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KAHFVSYYGNVYSADFSGDE  232 (361)
T ss_dssp             EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EEEEEBTTSEEEEEECSSSS
T ss_pred             ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EEEEEeCCCeEEEEEecCCC
Confidence            235567766 4567778899999999865 33321      111111 22334456676 44556678899999986422


Q ss_pred             c-ceeEeeCCC----------CceeEEEecCCCCCeEEEeeC-----------CCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          243 A-PIQELPGHT----------HWTWAVCCNPEYDGFILSAGT-----------DSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       243 ~-~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      . .+..+....          .....++|+|++ ..++.+..           .+.|.+||+.+                
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----------------  295 (361)
T 2oiz_A          233 VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----------------  295 (361)
T ss_dssp             CEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTT----------------
T ss_pred             ceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCC----------------
Confidence            1 112221100          111237899998 44444332           34899999998                


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                         .+.+.++..+.  +.+++|+|+|+ +|++++. +.|.+||+.+.
T Consensus       296 ---~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          296 ---KQRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ---TEEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSS
T ss_pred             ---CcEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCC
Confidence               88888888776  89999999999 6666665 99999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=7e-16  Score=128.82  Aligned_cols=240  Identities=8%  Similarity=-0.091  Sum_probs=160.9

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ..+.....+++|+|+++.|+.+   +..++.|.+|+..         ..  ...+..+...+.++++++++. ++++...
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~---~~~~~~i~~~~~~---------~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~   88 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFS---DVRQNRTWAWSDD---------GQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHG   88 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEE---EGGGTEEEEEETT---------SC--EEEEESSCSSEEEEEECTTCC-EEEEETT
T ss_pred             ecCCccccCCeEeCCCCEEEEE---eCCCCEEEEEECC---------CC--eEEEECCCCCcceeeECCCCc-EEEEecC
Confidence            3455667899999999855554   3678899999987         32  455666778899999999998 3444455


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE----ee-------------cCCeEEEEEcccCCcCc
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA----AT-------------CESSVQFWDLRSMGKTN  204 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~  204 (351)
                      ++.|.+||..++... .+...........+.+++++|+|+.+++    ++             ..+.|..++.. ++. .
T Consensus        89 ~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~  165 (296)
T 3e5z_A           89 LRRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S  165 (296)
T ss_dssp             TTEEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred             CCeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence            689999999755422 2211111111225678999999987776    32             13456666654 332 2


Q ss_pred             eeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          205 SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       205 ~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      .+....  +..++|+|+++ ++++.+.++.|++||+...+..   ...+..+...+..++++++| .++++.  ++.|.+
T Consensus       166 ~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~  241 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHV  241 (296)
T ss_dssp             EEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEE
T ss_pred             EeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEE
Confidence            222122  88999999998 5588888899999998732332   22333345567889999999 766655  788999


Q ss_pred             EEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe-CCCCCceEEEeeeCCeEEEeecCc
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ||..                    ++.+..+..+.. +.+++| .|+++ .|..++.+ .+..++..+
T Consensus       242 ~~~~--------------------g~~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          242 LTPD--------------------GDELGRVLTPQT-TSNLCFGGPEGR-TLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             ECTT--------------------SCEEEEEECSSC-CCEEEEESTTSC-EEEEEETT-EEEEEECSC
T ss_pred             ECCC--------------------CCEEEEEECCCC-ceeEEEECCCCC-EEEEEcCC-eEEEEEccc
Confidence            9985                    456666766666 899999 68887 56666655 344445544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=3.4e-15  Score=126.76  Aligned_cols=237  Identities=11%  Similarity=0.012  Sum_probs=155.3

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+..+...+.+++|+|+++.+++.    ..++.|.+|+..         ..+.......+...+.+++++|++. ++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~----~~~~~i~~~d~~---------~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~  103 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLD----VFEGNIFKINPE---------TKEIKRPFVSHKANPAAIKIHKDGR-LFVC  103 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEE----TTTCEEEEECTT---------TCCEEEEEECSSSSEEEEEECTTSC-EEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEE----CCCCEEEEEeCC---------CCcEEEEeeCCCCCcceEEECCCCc-EEEE
Confidence            3445566778999999998755443    577899999976         3333333335667899999999997 3444


Q ss_pred             EecC----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec------CCeEEEEEcccCCcCceeec
Q 018697          139 SIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEH  208 (351)
Q Consensus       139 ~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~  208 (351)
                      +..+    +.|.+||..+.... ......  .....+.+++++|+++.+++...      .+.|..+|..+++.......
T Consensus       104 ~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  180 (333)
T 2dg1_A          104 YLGDFKSTGGIFAATENGDNLQ-DIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN  180 (333)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCE-EEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred             eCCCCCCCceEEEEeCCCCEEE-EEEccC--ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC
Confidence            4444    58999998754322 111111  12336889999999876665543      35666666654443222221


Q ss_pred             ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE--------eeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          209 AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--------LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       209 ~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      .. +..++|+|+++.++++...++.|.+||++..+..+..        +.++ ..+..++++++| .++++...++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEE
Confidence            12 8899999999855566667889999998642322221        1122 467889999999 78887777889999


Q ss_pred             EEcCCCCCCCCCCcccccCCcccccccceeeccccc------eEEEEEeCCCCCceEEEee
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED------SVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~  334 (351)
                      ||..                    ++.+..+..+..      .+.+++|+|++..++++..
T Consensus       259 ~d~~--------------------g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          259 FNKR--------------------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             ECTT--------------------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ECCC--------------------CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            9984                    344444433322      5889999999874444444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=7.8e-16  Score=126.63  Aligned_cols=241  Identities=11%  Similarity=0.002  Sum_probs=163.3

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~  146 (351)
                      ...++++++++..++++   ...++.|.+|+..         ..........+...+.++++.+++. ++++.. ++.|.
T Consensus        25 ~p~~i~~~~~g~l~v~~---~~~~~~i~~~~~~---------~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTS---EGMYGRVVKLATG---------STGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTTCCEEEEE---CSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEE
T ss_pred             CccceEECCCCCEEEEc---cCCCCcEEEecCC---------CcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEE
Confidence            67889999998755413   3567889999865         2221111123335678899999988 344445 88999


Q ss_pred             EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEE
Q 018697          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLL  224 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l  224 (351)
                      +||...... .. ...   .....+.+++++++++.+++...++.|.+|+..+.......... . +..+++++++. ++
T Consensus        91 ~~d~~~~~~-~~-~~~---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  164 (270)
T 1rwi_B           91 TLAAGSNNQ-TV-LPF---DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY  164 (270)
T ss_dssp             EECTTCSCC-EE-CCC---CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred             EEeCCCceE-ee-eec---CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence            999875322 11 111   11236889999999886666567889999976554332211111 2 78999999997 77


Q ss_pred             EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      ++...++.|.+||... .........+...+..++++++| .++++...++.|.+||...                   .
T Consensus       165 v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~-------------------~  223 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS-------------------T  223 (270)
T ss_dssp             EEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC-------------------S
T ss_pred             EEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC-------------------C
Confidence            7777788999999875 32222222333668899999999 8888888888999999865                   2


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                      ........+...+.+++++++|. ++++...++.|+++++.....
T Consensus       224 ~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          224 TSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred             cceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence            22222222334689999999998 888988999999999986543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=7.1e-16  Score=131.72  Aligned_cols=267  Identities=10%  Similarity=0.079  Sum_probs=159.7

Q ss_pred             eEeeeecCCCCcceEEEeeeeeC-----CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC-Cc
Q 018697           17 RCISDVKADTDHTSFLTGTLSLK-----EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG-ES   90 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~-~d   90 (351)
                      +.+....+  ++.++++......     ....|+++++....  .  ..+    ..+..++|+|+++.|+.+...++ ..
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~--~~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA--R--RFI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--E--EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc--e--EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            33444444  6666666433221     13456666655432  2  122    56888999999999887642211 12


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--------------------------CCc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--------------------------EEN  144 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--------------------------d~~  144 (351)
                      ..|.+|++.         ..+..... .+.. +..++|+|+++.+++++..                          ...
T Consensus        85 ~~l~~~~~~---------~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  153 (347)
T 2gop_A           85 SEIWVADLE---------TLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT  153 (347)
T ss_dssp             EEEEEEETT---------TTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred             ceEEEEECC---------CCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence            346677765         33433333 3333 9999999999964444322                          257


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC------C-eEEEEEcccCCcCceeecce-eEEEEc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------S-SVQFWDLRSMGKTNSIEHAH-VRNVDY  216 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~-~i~iwd~~~~~~~~~~~~~~-v~~~~~  216 (351)
                      |++||+.++.....+..      . .+..+.|+|++ .++++..+      . ...+|.+.+++. ..+.... +..+  
T Consensus       154 l~~~d~~~~~~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~~~~~~~--  222 (347)
T 2gop_A          154 FWIFDTESEEVIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEKVSFYAV--  222 (347)
T ss_dssp             EEEEETTTTEEEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEEESEEEE--
T ss_pred             EEEEECCCCeEEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccCcceeeE--
Confidence            88999976432122211      1 57788999999 66666543      2 345554444432 2222113 4444  


Q ss_pred             CCCCCcEEEEecC-------CCeEEEEecccCCcceeEeeCCCCceeE-EEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          217 DTKKKHLLVTAAD-------ESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       217 ~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      +|+|+.+++.+..       ...|.+||  . ++.......+...+.. +.|+ ++  ++++++.++.++|| +..    
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~----  291 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD----  291 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES----
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC----
Confidence            8999854444433       24688888  3 4433334456677886 8999 65  88888999999999 874    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE-EEeecC
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV-VVESVK  345 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v-~vw~~~  345 (351)
                                     ++..... .+...|.+++|+|  . ++++++.++.. .+|.++
T Consensus       292 ---------------g~~~~~~-~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          292 ---------------GEIKPIA-KGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ---------------SSEEEEE-CSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred             ---------------CceEEEe-cCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence                           4433333 3467799999999  5 67777766654 677653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=2.2e-16  Score=148.45  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=150.9

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcce-----eeeeeCCCCCceEEEEeec-----CCc
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEI-----WDLSSCPFDQRIFSTVFST-----GES   90 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~l~~~~~~~-----~~d   90 (351)
                      .+.+.+++..++.+      ++.|.+|++......   ..+.+|....     .+++||||++.|+......     +..
T Consensus        21 ~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CEEECSSSEEEEEE------TTEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccEECCCCcEEEEc------CCcEEEEECCCCceE---EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            34455666544432      688999998765432   3345555332     3467899999988863110     011


Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc----ccC
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ----SSG  166 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~  166 (351)
                      +.+.+||+.         +.+. ..+..|...+..++|||||+. + +...++.|++|++.++..........    ..+
T Consensus        92 ~~~~~~d~~---------~~~~-~~l~~~~~~~~~~~~SPdG~~-l-a~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g  159 (740)
T 4a5s_A           92 ASYDIYDLN---------KRQL-ITEERIPNNTQWVTWSPVGHK-L-AYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (740)
T ss_dssp             EEEEEEETT---------TTEE-CCSSCCCTTEEEEEECSSTTC-E-EEEETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             eEEEEEECC---------CCcE-EEcccCCCcceeeEECCCCCE-E-EEEECCeEEEEECCCCceEEEcCCCCccceecC
Confidence            567799998         3343 346677888999999999996 3 33357899999998654322111111    011


Q ss_pred             cc---------cceeeeEECCCCCcEEEeecC-C-----------------------------------eEEEEEccc--
Q 018697          167 ML---------HYLSGGAWDPHDVNAVAATCE-S-----------------------------------SVQFWDLRS--  199 (351)
Q Consensus       167 ~~---------~~v~~~~~~~~~~~l~~~~~d-~-----------------------------------~i~iwd~~~--  199 (351)
                      +.         ....++.|+|||+.|+.++.| .                                   .|++||+.+  
T Consensus       160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS  239 (740)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred             cccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence            11         122458999999999887522 1                                   588899988  


Q ss_pred             -CCc--Cceeec-------ce-eEEEEcCCCCCcEEEEec----CCCeEEEEecccCCc------ceeEe--eCCCCcee
Q 018697          200 -MGK--TNSIEH-------AH-VRNVDYDTKKKHLLVTAA----DESGIHLWDLRMLKA------PIQEL--PGHTHWTW  256 (351)
Q Consensus       200 -~~~--~~~~~~-------~~-v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~------~~~~~--~~~~~~v~  256 (351)
                       ++.  ...+..       .. +..++|+|+|+ +++...    .+..|++||+.+ ++      .+..+  ..|...|.
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSSCSS
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCceEc
Confidence             632  222321       22 89999999998 455432    234799999987 43      12222  45666655


Q ss_pred             -----EEEecCCCCCeEE-Eee-CCC--eEEEEEcCC
Q 018697          257 -----AVCCNPEYDGFIL-SAG-TDS--TVNLWLVST  284 (351)
Q Consensus       257 -----~~~~~~~~~~~l~-s~~-~dg--~i~iwd~~~  284 (351)
                           .+.|+|+| ..|+ ..+ .+|  .|.+||...
T Consensus       318 ~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          318 RFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             SSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTC
T ss_pred             cCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCC
Confidence                 78999999 6554 554 444  577778765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=6.8e-16  Score=144.12  Aligned_cols=285  Identities=8%  Similarity=-0.048  Sum_probs=176.2

Q ss_pred             CCcceEEEeeeeeCCC-CEEEEEEeCCCCCeEEEE---eeecCCcceeeeeeCCCCCceEEEEee-cCCcceEEEEEccc
Q 018697           26 TDHTSFLTGTLSLKEE-NEVHLLRLSSGGTELICE---GLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYGAAIWQIPE  100 (351)
Q Consensus        26 ~~~~~~~~g~~~~~~~-~~i~~~~~~~~~~~~~~~---~~~~h~~~v~~i~~~~~~~~l~~~~~~-~~~d~~i~vw~~~~  100 (351)
                      +++.+++......+.+ ..++...........+..   ...+|...+..++|||||+.|+.+... |+.+..|++||+. 
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-  155 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-  155 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-
Confidence            5677777655433322 333333332222222211   012455679999999999998876543 3446789999998 


Q ss_pred             ccCCCCCCcceeeeeeeccccce--eEEEecCCCCCcEEEEecCCc-------------EEEEEcCCCCCCccccccccc
Q 018697          101 LYGQLNSPQLERIAALDAHVGKI--NCVLWWSSGRHDKLVSIDEEN-------------IFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~~d~~-------------v~iwd~~~~~~~~~~~~~~~~  165 (351)
                              +++.+.  ..+...+  ..++|+|||+. ++.++.|..             |++|++.++.....+.. ...
T Consensus       156 --------tg~~~~--~~~~~~~~~~~~~wspDg~~-l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~~~  223 (695)
T 2bkl_A          156 --------SGEWSK--VDVIEGGKYATPKWTPDSKG-FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-ERT  223 (695)
T ss_dssp             --------TCCBCS--SCCBSCCTTCCCEECTTSSE-EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-CCC
T ss_pred             --------CCCCcC--CcccCcccccceEEecCCCE-EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-ecC
Confidence                    333320  1111122  67899999995 555555554             99999987543222221 122


Q ss_pred             CcccceeeeEECCCCCcEEEeecCC----eEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEec---CCCeEEEE
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCES----SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA---DESGIHLW  236 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~---~dg~i~i~  236 (351)
                      ++...+.++.|+|+|++|+.++.++    .|++||..+++. ..+....  +....+ +++. +++...   .++.|.+|
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEE
Confidence            3334678999999999998887655    677776655433 3333222  455555 6777 666655   35899999


Q ss_pred             ecccCCc-ceeEeeCC--CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018697          237 DLRMLKA-PIQELPGH--THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (351)
Q Consensus       237 d~~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      |+..... ....+..+  ...+..++|+ ++ .++++...|+..+||.+...                  +.....+..+
T Consensus       301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~------------------g~~~~~l~~~  360 (695)
T 2bkl_A          301 DPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLK------------------GKPVRTVQLP  360 (695)
T ss_dssp             BTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETT------------------CCEEEECCCS
T ss_pred             eCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCC------------------CCeeEEecCC
Confidence            9976321 12444433  4567888888 55 78899999999988877630                  3334444444


Q ss_pred             -cceEEEEEeCCCCCceEEEee---eCCeEEEeecCc
Q 018697          314 -EDSVYGLAWSSREPWIFASLS---YDGRVVVESVKP  346 (351)
Q Consensus       314 -~~~v~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~  346 (351)
                       ...+..++++|+++.++++.+   ..+.|++||+.+
T Consensus       361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence             566888999999874444443   357899999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=2.5e-15  Score=128.96  Aligned_cols=266  Identities=12%  Similarity=0.036  Sum_probs=176.6

Q ss_pred             eecCCCCcceEEEeeeeeC------CCCEEEEEEeCCCCCeEEEEeeec------CCcceeeeeeCCCCCceEEEEeecC
Q 018697           21 DVKADTDHTSFLTGTLSLK------EENEVHLLRLSSGGTELICEGLFS------HPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .+.+++++.+++++.....      .++.|.+|+....  ... ..+..      +......++++|++++|+++.  .+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~-~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n--~~  128 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFE-KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN--AS  128 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEE-EEEEECTTBCCBCCCGGGEEECTTSSEEEEEE--ES
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEE-EEEEcCccccccCCCcceEEECCCCCEEEEEC--CC
Confidence            6778899988888753211      2456887876532  222 22221      234677899999999998873  12


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc--cccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--KQSS  165 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~  165 (351)
                      .++.|.+||+.         +.+.+.. +.. . ....+.+.|++...+++.+.||.+.+|++...........  ....
T Consensus       129 ~~~~v~v~d~~---------~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          129 PATSIGIVDVA---------KGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             SSEEEEEEETT---------TTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             CCCeEEEEECC---------CCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            36799999998         5566665 432 2 2233567888765566668899999999875333221100  0000


Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC--ceee--c------c---e-eEEEEcCCCCCcEEEEec---
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIE--H------A---H-VRNVDYDTKKKHLLVTAA---  228 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~--~------~---~-v~~~~~~~~~~~~l~~~~---  228 (351)
                      ....+ ..+.+++++..++..+.++.+.++|+......  ..+.  .      .   . ...++++|+++.++++..   
T Consensus       198 ~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~  276 (361)
T 2oiz_A          198 VKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG  276 (361)
T ss_dssp             TTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred             CCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence            00111 23344567777777778899999998754321  1111  0      0   0 223789999885555443   


Q ss_pred             -------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          229 -------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       229 -------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                             ..+.|.+||+.+ .+.+.++..+.  +..++|+|+| ++|++++. +.|.+||..+                 
T Consensus       277 ~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t-----------------  334 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQ-----------------  334 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSS-----------------
T ss_pred             CcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCC-----------------
Confidence                   135899999998 67888888776  8999999999 78888876 9999999998                 


Q ss_pred             ccc--ccceeeccccceEEEEEeCCCCC
Q 018697          302 RAN--SLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       302 ~~~--~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                        +  +.+..+..+....+.++++|+|.
T Consensus       335 --~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          335 --PEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             --SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             --CcceeeEEeccCCCCcEEEEecCCCC
Confidence              7  88888766666788999999986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=6e-15  Score=124.10  Aligned_cols=247  Identities=7%  Similarity=-0.036  Sum_probs=162.1

Q ss_pred             CcceeeeeeCCCCCceEEE---EeecCCcceEEEEEcccccCCCCCCcceeeeeee-----ccccceeEEEecCC-CCCc
Q 018697           65 PNEIWDLSSCPFDQRIFST---VFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-----AHVGKINCVLWWSS-GRHD  135 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~---~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~-~~~~  135 (351)
                      -....+++|.+++..+++.   ...+..++.|.+|+..         ..+.. .+.     ++...+.+++++++ +.  
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~---------~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~--   84 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK---------TGKKT-VICKPEVNGYGGIPAGCQCDRDANQ--   84 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT---------TCCEE-EEECCEETTEECCEEEEEECSSSSE--
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC---------CCcEE-EEEecccCCCCCCCceEEEecCCCc--
Confidence            3466789999888665550   0001256789999875         22221 222     24567899999999 66  


Q ss_pred             EEEEecCCcEEEEEcCCCCCCccc-ccccccCcccceeeeEECCCCCcEEEeecC---------------CeEEEEEccc
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------------SSVQFWDLRS  199 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~  199 (351)
                      ++++.....|.+||.. +. ...+ ...........+.+++++++++.+++...+               +.|..||.. 
T Consensus        85 l~v~~~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           85 LFVADMRLGLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EEEEETTTEEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EEEEECCCCEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            4444434579999987 33 2222 111111112358899999999876665544               567777765 


Q ss_pred             CCcCceeecce-eEEEEcC----CCCCcEEEEecCCCeEEEEecccCCc-----ceeEeeCCC-CceeEEEecCCCCCeE
Q 018697          200 MGKTNSIEHAH-VRNVDYD----TKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPGHT-HWTWAVCCNPEYDGFI  268 (351)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~l  268 (351)
                      ++......... ...++++    |+++.++++...++.|.+||+...+.     ....+..+. ..+..++++++| .++
T Consensus       162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~  240 (314)
T 1pjx_A          162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLL  240 (314)
T ss_dssp             SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEE
T ss_pred             CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEE
Confidence            44322222112 7888999    99974566667789999999863232     222333333 567889999999 888


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++...++.|.+||..+                   ++.+..+..+...+.+++|+|++..++++...++.|..|++..
T Consensus       241 v~~~~~~~i~~~d~~~-------------------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDG-------------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTEEEEECTTC-------------------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCEEEEEcCCC-------------------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8877788999999986                   5555566556567899999999985556666678999999763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=2.9e-16  Score=136.48  Aligned_cols=236  Identities=8%  Similarity=-0.022  Sum_probs=147.6

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc-eeEEEecCCCCCcEEEEecCCcE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK-INCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      .+..++|+|+|+.|+.+... +.+..|.+|++.         ..+.. .+..+... ...+.|+|+++. ++..+.++.|
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~---------~~~~~-~l~~~~~~~~~~~~~spdg~~-l~~~~~~~~l  104 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLE---------TQQAV-QLTEGKGDNTFGGFISTDERA-FFYVKNELNL  104 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECT-TSSCEEEEEETT---------TTEEE-ECCCSSCBCTTTCEECTTSSE-EEEEETTTEE
T ss_pred             eeecCcCCCCCCEEEEEEec-CCCceEEEEECC---------CCcEE-EeecCCCCccccceECCCCCE-EEEEEcCCcE
Confidence            47889999999998876411 123467777876         33333 23333333 334789999995 5555667789


Q ss_pred             EEEEcCCCCCCcccccccccCcccceee-------------------eEECCCCCcEEEe-----ecCCeEEEEEcccCC
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSG-------------------GAWDPHDVNAVAA-----TCESSVQFWDLRSMG  201 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~  201 (351)
                      ++||+.++... .+.... .+   ....                   ..|+|+++.++..     ..+..|++||+.+++
T Consensus       105 ~~~d~~~~~~~-~~~~~~-~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          105 MKVDLETLEEQ-VIYTVD-EE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             EEEETTTCCEE-EEEECC-TT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             EEEECCCCCcE-EEEecc-cc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence            99999865422 221111 01   1111                   4678888877654     356789999998876


Q ss_pred             cCceeecce-eEEEEcCC-CCCcEEEEecCC------CeEEEEecccCCcceeEeeCC--CCceeEEEecCCCCCeEEEe
Q 018697          202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADE------SGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~  271 (351)
                      ......... +..+.|+| ++. .++..+.+      ..|.+||+.. .. ...+..+  ...+..+.|+|+| .+|+..
T Consensus       180 ~~~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg-~~l~~~  255 (396)
T 3c5m_A          180 LEVIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDG-SAMAYV  255 (396)
T ss_dssp             EEEEEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTS-SCEEEE
T ss_pred             EEeeccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCC-CEEEEE
Confidence            544443233 88999999 776 34443333      4688888864 32 3333333  2357889999999 666655


Q ss_pred             eCC-----CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC-CCCceEEEee-----------
Q 018697          272 GTD-----STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLS-----------  334 (351)
Q Consensus       272 ~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~-----------  334 (351)
                      +.+     +.|.+||+..                   ++...... ... .. +.|+| +|+ +++.++           
T Consensus       256 ~~~~~~~~~~l~~~d~~~-------------------g~~~~l~~-~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          256 SYFKGQTDRVIYKANPET-------------------LENEEVMV-MPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EEETTTCCEEEEEECTTT-------------------CCEEEEEE-CCS-EE-EEEECSSSS-EEEEEECCC--------
T ss_pred             ecCCCCccceEEEEECCC-------------------CCeEEeee-CCC-CC-CCccCCCCc-eEEEecCCcceeecccc
Confidence            443     4599999986                   43322111 111 22 88999 998 666543           


Q ss_pred             -----eCCeEEEeecCc
Q 018697          335 -----YDGRVVVESVKP  346 (351)
Q Consensus       335 -----~dg~v~vw~~~~  346 (351)
                           .+..|++||+..
T Consensus       313 ~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             --CCCCCCEEEEEETTT
T ss_pred             ccccCCCCcEEEEeccc
Confidence                 347899999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=5.8e-15  Score=125.03  Aligned_cols=238  Identities=9%  Similarity=0.013  Sum_probs=162.3

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      .....+.+.  +..+.++.   ..++.|.+||..         +.+.+.++. .......+++++++. ++++...++.|
T Consensus        44 ~~~~~i~~~--~~~lyv~~---~~~~~v~viD~~---------t~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v  107 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVV---NNSHVIFAIDIN---------TFKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRI  107 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEE---GGGTEEEEEETT---------TCCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEE
T ss_pred             ccceEEEEE--CCEEEEEE---cCCCEEEEEECc---------ccEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeE
Confidence            345677774  44555542   567899999988         667777774 346688999999884 34444478999


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCc
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH  222 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~  222 (351)
                      .+||+.+......+......+.......+++  ++..++++.  .++.|.++|+.+++....+..+. +..++++|+|+ 
T Consensus       108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-  184 (328)
T 3dsm_A          108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-  184 (328)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-
T ss_pred             EEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-
Confidence            9999986543322221111111124556777  455566655  48899999999988777776544 78899999998 


Q ss_pred             EEEEecCC----------CeEEEEecccCCcceeEeeCC-CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          223 LLVTAADE----------SGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       223 ~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      +++++..+          +.|.++|..+ .+....+... ......++|+|++ ..|+.+..  .|.+||..+       
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t-------  253 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEA-------  253 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTC-------
T ss_pred             EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCC-------
Confidence            66666554          7899999886 5555555432 2467899999998 66666554  899999987       


Q ss_pred             CcccccCCcccccccce--eeccccceEEEEEeCCCCCceEEEe----eeCCeEEEeecC
Q 018697          292 SESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSREPWIFASL----SYDGRVVVESVK  345 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~v~vw~~~  345 (351)
                                  ++...  .+..+.....+++++|++..++++.    ..++.|.+|+..
T Consensus       254 ------------~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          254 ------------DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             ------------SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ------------CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence                        33221  1111235678999999555477777    678999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=5.2e-15  Score=125.66  Aligned_cols=235  Identities=9%  Similarity=0.043  Sum_probs=159.8

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      ...|.+++|+++...++..    ..++.++.|.-            .....+..+...+.+++|++++. +++++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~   67 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPI----ISESELQTITA------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGN   67 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCC----CCGGGSCEEEC------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCE
T ss_pred             ccccceeeecCCccceeEE----eecccCccccc------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCE
Confidence            3467889999988777664    57888999932            33455666667789999999998 4455567889


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC----CeEEEEEcccCCcCceee---cce-eEEEEc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIE---HAH-VRNVDY  216 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~---~~~-v~~~~~  216 (351)
                      |.+||..++... ....    .+...+.+++++|+++.+++...+    +.|.+||..++.....+.   ... +..+++
T Consensus        68 i~~~d~~~~~~~-~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A           68 IFKINPETKEIK-RPFV----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             EEEECTTTCCEE-EEEE----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             EEEEeCCCCcEE-EEee----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence            999998864322 2111    123478999999999866666555    689999988765432222   122 899999


Q ss_pred             CCCCCcEEEEecC------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCC
Q 018697          217 DTKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       217 ~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  289 (351)
                      +|++. ++++...      .+.|..+|... + .+..+..+...+..++|+|++ . ++++.+.++.|.+||....    
T Consensus       143 d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~----  214 (333)
T 2dg1_A          143 DSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-R-TVTPIIQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDD----  214 (333)
T ss_dssp             CTTSC-EEEEECCCBTTBCCEEEEEECTTS-C-CEEEEEEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTT----
T ss_pred             CCCCC-EEEEeccccccCCCceEEEEeCCC-C-EEEEeecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCC----
Confidence            99997 6665543      35566666543 2 233333334457899999999 6 4455566889999999641    


Q ss_pred             CCCcccccCCcccccccc--------eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          290 LPSESLVESPNQRANSLL--------NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                    +..+        ..+.++ ..+..++++++|. ++++...++.|.+|+.+
T Consensus       215 --------------g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          215 --------------GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             --------------SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             --------------CcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence                          1111        112222 3578899999998 77777778899999874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=3e-14  Score=133.93  Aligned_cols=249  Identities=13%  Similarity=0.050  Sum_probs=156.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      |...+..++|||||+.|+.+...+|.+ ..|++||+.         .++.+.. ..+...+..++|+|| +. ++.++.+
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~---------tg~~~~~-~~~~~~~~~~~wspD-~~-l~~~~~~  228 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA---------DGKPLAD-ELKWVKFSGLAWLGN-DA-LLYSRFA  228 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT---------TCCEEEE-EEEEEESCCCEESTT-SE-EEEEECC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC---------CCCCCCc-cCCCceeccEEEECC-CE-EEEEEec
Confidence            445788999999999998875443333 579999998         3343322 122223467899999 75 4444433


Q ss_pred             C--------------cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccC--C
Q 018697          143 E--------------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSM--G  201 (351)
Q Consensus       143 ~--------------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~--~  201 (351)
                      +              .|++|++.++.....+.. ....+...+.++.|+|||++|+..+.+     ..|++||+.++  +
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF-ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGCEEEE-CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhCEEEe-ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence            3              388999876542222221 112222347889999999998887754     38999999876  3


Q ss_pred             cCceeecce--eEEEEcCCCCCcEEEEecC---CCeEEEEecccC-CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC
Q 018697          202 KTNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       202 ~~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                      ....+....  ..... +|+++.+++....   ++.|.+||+... ......+..+...+..+.|+ ++ .++++...|+
T Consensus       308 ~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg  384 (741)
T 1yr2_A          308 PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDA  384 (741)
T ss_dssp             CCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETT
T ss_pred             ccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECC
Confidence            134443222  33333 3888844444332   456999998753 12233334444556677777 44 7888899999


Q ss_pred             eEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCCCceEEEee---eCCeEEEeecCc
Q 018697          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLS---YDGRVVVESVKP  346 (351)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~  346 (351)
                      ..+||.+...                  +.....+.. +...+..++++|+++.++++.+   ..+.|++||+.+
T Consensus       385 ~~~l~~~~~~------------------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          385 KSQVLAFDLD------------------GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEEEETT------------------SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEEeCC------------------CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            8888866530                  334444443 3567889999999874544443   457899999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=6.4e-13  Score=110.68  Aligned_cols=275  Identities=9%  Similarity=-0.016  Sum_probs=174.5

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      ..+..+..++++. +.+++   ..++.+..++..   +.+.......+...+.++++.+++..+++.    ..++.|..|
T Consensus        15 ~~~~~i~~d~~g~-l~v~~---~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~   83 (299)
T 2z2n_A           15 TGPYGITVSDKGK-VWITQ---HKANMISCINLD---GKITEYPLPTPDAKVMCLTISSDGEVWFTE----NAANKIGRI   83 (299)
T ss_dssp             CCEEEEEECTTSC-EEEEE---TTTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEE
T ss_pred             CCccceEECCCCC-EEEEe---cCCCcEEEEcCC---CCeEEecCCcccCceeeEEECCCCCEEEeC----CCCCeEEEE
Confidence            3455566666654 44443   234666665544   223222223345789999999988766664    456788888


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      +...        ... ...+......+.++++.+++. ++++...++.|.+||. ++. ......   ......+.++++
T Consensus        84 ~~~g--------~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~-~~~~~~---~~~~~~~~~i~~  148 (299)
T 2z2n_A           84 TKKG--------IIK-EYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGK-IREYEL---PNKGSYPSFITL  148 (299)
T ss_dssp             CTTS--------CEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCC-EEEEEC---SSTTCCEEEEEE
T ss_pred             CCCC--------cEE-EEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCC-EEEecC---CCCCCCCceEEE
Confidence            8651        111 111222455788999999887 3444456789999998 332 221111   112236889999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCce-eec-ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCC
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNS-IEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGH  251 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~  251 (351)
                      .+++..+++...++.|..||. +++.... ... .. +..+++++++. ++++...++.|.+||. + +. +..+  ..+
T Consensus       149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~-g~-~~~~~~~~~  223 (299)
T 2z2n_A          149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-S-GE-ITEFKIPTP  223 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-T-CC-EEEEECSST
T ss_pred             cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-C-Cc-EEEEECCCC
Confidence            999876666656789999998 5544322 111 12 88999999997 7776767889999998 4 33 2223  334


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc-eeeccccceEEEEEeCCCCCceE
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL-NSYSDYEDSVYGLAWSSREPWIF  330 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l  330 (351)
                      ...+.+++++++| .++++...++.|..||..                    +... ..+..+...+.++++ +++. ++
T Consensus       224 ~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~--------------------g~~~~~~~~~~~~~~~~i~~-~~g~-l~  280 (299)
T 2z2n_A          224 NARPHAITAGAGI-DLWFTEWGANKIGRLTSN--------------------NIIEEYPIQIKSAEPHGICF-DGET-IW  280 (299)
T ss_dssp             TCCEEEEEECSTT-CEEEEETTTTEEEEEETT--------------------TEEEEEECSSSSCCEEEEEE-CSSC-EE
T ss_pred             CCCceeEEECCCC-CEEEeccCCceEEEECCC--------------------CceEEEeCCCCCCccceEEe-cCCC-EE
Confidence            5678999999999 777766678899999983                    2211 112334456899999 8887 66


Q ss_pred             EEeeeCCeEEEeecCc
Q 018697          331 ASLSYDGRVVVESVKP  346 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~  346 (351)
                      ++.. .+.|..++.++
T Consensus       281 v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          281 FAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EEET-TTEEEEEEEC-
T ss_pred             EEec-CCcEEEEEcCc
Confidence            6554 56677777654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.4e-14  Score=122.72  Aligned_cols=222  Identities=13%  Similarity=0.047  Sum_probs=148.8

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee------
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL------  116 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~------  116 (351)
                      .|.+++  ...+.+....-.++-..+..++++|+++.+++    ...++.|++|+...        ....+..+      
T Consensus        70 ~i~~~d--~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~----d~~~~~v~~~~~~g--------~~~~~~~~~~~~~~  135 (329)
T 3fvz_A           70 TILVID--PNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT----DVALHQVFKLDPHS--------KEGPLLILGRSMQP  135 (329)
T ss_dssp             CEEEEC--TTTCCEEEEECTTTCSSEEEEEECTTSCEEEE----ETTTTEEEEECTTC--------SSCCSEEESBTTBC
T ss_pred             cEEEEE--CCCCeEEeccCCCccCCceEEEECCCCCEEEE----ECCCCEEEEEeCCC--------CeEEEEEecccCCC
Confidence            455444  43344432222244467899999999985554    36778999999762        11133343      


Q ss_pred             ---eccccceeEEEecC-CCCCcEEEEe-cCCcEEEEEcCCCCCCcccccccc-----cCcccceeeeEECCC-CCcEEE
Q 018697          117 ---DAHVGKINCVLWWS-SGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQS-----SGMLHYLSGGAWDPH-DVNAVA  185 (351)
Q Consensus       117 ---~~h~~~v~~~~~~~-~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~l~~  185 (351)
                         ..+-.....++++| ++. ++++.+ .++.|++|+.. +...........     .++.....+++++|+ +..+++
T Consensus       136 g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~  213 (329)
T 3fvz_A          136 GSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA  213 (329)
T ss_dssp             CCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred             CCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence               23445688999999 565 455555 58999999954 222221111100     122335889999998 555555


Q ss_pred             eecCCeEEEEEcccCCcCceeecc---e-eEEEEcCCCCCcEEEE-------ecCCCeEEEEecccCCcceeEee---CC
Q 018697          186 ATCESSVQFWDLRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVT-------AADESGIHLWDLRMLKAPIQELP---GH  251 (351)
Q Consensus       186 ~~~d~~i~iwd~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~---~~  251 (351)
                      ...++.|++||..+++.+..+...   . +..++++| +. ++++       ...+..|++||..+ ++.+..+.   .+
T Consensus       214 d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~  290 (329)
T 3fvz_A          214 DRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH  290 (329)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC
T ss_pred             ECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc
Confidence            567899999999988777766422   2 88999999 32 3333       33455899999887 66677663   56


Q ss_pred             CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ...+..|+++|+| .++++...++.|++|++..
T Consensus       291 ~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          291 FDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred             cCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence            6778999999999 8999999999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=2.9e-14  Score=118.29  Aligned_cols=200  Identities=12%  Similarity=0.124  Sum_probs=142.3

Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc-ccccCcccceeeeEE-CCCCCcEEEeec-CCeEEE
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSSGMLHYLSGGAW-DPHDVNAVAATC-ESSVQF  194 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~i  194 (351)
                      ++-..+.++++++++. ++++...++.|.+||... ........ ....++...+.++++ .+++..+++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCC-EEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3446788999999987 455557789999999872 22221111 011233446889999 466655555433 889999


Q ss_pred             EEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEE
Q 018697          195 WDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFIL  269 (351)
Q Consensus       195 wd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  269 (351)
                      || .+++.+..+...+   +..++++|++. ++++...++.|.+||..  ++.+..+.  .+...+..++++|+| .+++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v  179 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFI  179 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCC-CEEE
Confidence            99 5566555554322   89999999997 78888888999999965  44555554  344568999999999 7888


Q ss_pred             EeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeeeCC-eEEEeecC
Q 018697          270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDG-RVVVESVK  345 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg-~v~vw~~~  345 (351)
                      +...++.|++||..                    ++.+..+..+  ...+.+++++++|. ++++...++ .|.+|+..
T Consensus       180 ~~~~~~~i~~~~~~--------------------g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          180 SDNRAHCVKVFNYE--------------------GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEGGGTEEEEEETT--------------------CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT
T ss_pred             EECCCCEEEEEcCC--------------------CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC
Confidence            88889999999975                    3444445332  35688999999998 788877776 99999965

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=7.8e-13  Score=110.16  Aligned_cols=239  Identities=5%  Similarity=-0.075  Sum_probs=161.9

Q ss_pred             ecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        62 ~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ..+...+.++++.+++..+++.    ..++.|.+|+...        ... ...+..+...+.++++.+++. ++++...
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~----~~~~~v~~~d~~~--------~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~   76 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQ----HKANMISCINLDG--------KIT-EYPLPTPDAKVMCLTISSDGE-VWFTENA   76 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEE----TTTTEEEEECTTC--------CEE-EEECSSTTCCEEEEEECTTSC-EEEEETT
T ss_pred             CCcCCCccceEECCCCCEEEEe----cCCCcEEEEcCCC--------CeE-EecCCcccCceeeEEECCCCC-EEEeCCC
Confidence            3455789999999998766664    4567899998651        111 111223456789999999988 3444455


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec--ce-eEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~-v~~~~~~~  218 (351)
                      ++.|..|+...  .......   ......+.++++.+++..+++...++.|..||. +++.......  .. +..+++++
T Consensus        77 ~~~i~~~~~~g--~~~~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~  150 (299)
T 2z2n_A           77 ANKIGRITKKG--IIKEYTL---PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS  150 (299)
T ss_dssp             TTEEEEECTTS--CEEEEEC---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             CCeEEEECCCC--cEEEEeC---CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence            78899999762  2211111   112336889999998876666667889999998 4443222111  12 89999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeE-eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      ++. ++++...++.|..||. + ++.... +......+..++++++| .++++...++.|.+||. .             
T Consensus       151 ~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~-------------  212 (299)
T 2z2n_A          151 DNA-LWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-S-------------  212 (299)
T ss_dssp             TSC-EEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-T-------------
T ss_pred             CCC-EEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-C-------------
Confidence            997 7777777789999998 4 433221 23344568899999998 77777767889999998 5             


Q ss_pred             CCcccccccce-eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          298 SPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       298 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                            +.... ....+...+.+++++++|. ++++...++.|..|+..
T Consensus       213 ------g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          213 ------GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             ------CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT
T ss_pred             ------CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC
Confidence                  33221 1223445688999999988 77776677889999864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.66  E-value=1.1e-13  Score=115.55  Aligned_cols=233  Identities=9%  Similarity=0.041  Sum_probs=154.6

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      .-.....|+|++..|+.+   ...++.|..|+..         .... ..+ .....+.+++++++++  ++++. +..|
T Consensus        13 ~~~Egp~w~~~~~~l~~~---d~~~~~i~~~d~~---------~~~~-~~~-~~~~~~~~i~~~~dG~--l~v~~-~~~l   75 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFV---DIPAKKVCRWDSF---------TKQV-QRV-TMDAPVSSVALRQSGG--YVATI-GTKF   75 (297)
T ss_dssp             SBEEEEEEETTTTEEEEE---ETTTTEEEEEETT---------TCCE-EEE-ECSSCEEEEEEBTTSS--EEEEE-TTEE
T ss_pred             ccccCCeEECCCCEEEEE---ECCCCEEEEEECC---------CCcE-EEE-eCCCceEEEEECCCCC--EEEEE-CCeE
Confidence            344578899977777665   3667899999976         2222 223 3456789999999999  45544 5689


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---------CeEEEEEcccCCcCceeecc-e-eEEE
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIEHA-H-VRNV  214 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~-~-v~~~  214 (351)
                      .+||..++.. ..+...........+++++++|+++.+++....         ..-.+|.+........+... . .+.+
T Consensus        76 ~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           76 CALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL  154 (297)
T ss_dssp             EEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred             EEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence            9999875432 111111111112358899999999865554321         23345554432222222211 2 7899


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecc-cCCcc-----eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLR-MLKAP-----IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      +|+|+++.++++.+.++.|.+||+. ..+..     +..+..+......++++++| .+.++...++.|..||..+    
T Consensus       155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~t----  229 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVT----  229 (297)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTT----
T ss_pred             EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCC----
Confidence            9999998666777778999999974 21221     22222334567899999999 8888877788999999987    


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeC-CCCCceEEEeeeC
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (351)
                                     ++.+..+..+...+++++|. |+++.++++...+
T Consensus       230 ---------------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          230 ---------------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             ---------------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             ---------------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence                           78887887776679999998 8887566666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.66  E-value=3.3e-14  Score=121.35  Aligned_cols=224  Identities=10%  Similarity=0.105  Sum_probs=143.8

Q ss_pred             cceeeeeeCCCCCceEEEEeec-----CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe
Q 018697           66 NEIWDLSSCPFDQRIFSTVFST-----GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI  140 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  140 (351)
                      ..+..+++  +|+.++.+....     ..++.|.+|++.         ..+. ..+    ..+..++|+|+|+.+++++.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~---------~~~~-~~l----~~~~~~~~SpDg~~la~~~~   78 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK---------NNAR-RFI----ENATMPRISPDGKKIAFMRA   78 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT---------TCCE-EEE----ESCEEEEECTTSSEEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC---------CCce-EEc----ccCCCeEECCCCCEEEEEEe
Confidence            45666777  788877653211     125678889887         2222 223    46788999999996444443


Q ss_pred             cC--C--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---------------------------
Q 018697          141 DE--E--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------------------------  189 (351)
Q Consensus       141 ~d--~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------  189 (351)
                      .+  +  .|.+|++.++. ...+...     .. +..++|+|+++.|+.++.+                           
T Consensus        79 ~~~~~~~~l~~~~~~~g~-~~~l~~~-----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  151 (347)
T 2gop_A           79 NEEKKVSEIWVADLETLS-SKKILEA-----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK  151 (347)
T ss_dssp             ETTTTEEEEEEEETTTTE-EEEEEEE-----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred             ccCCCcceEEEEECCCCc-eEEEEcC-----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence            32  3  37777877532 2222211     12 8899999999998887642                           


Q ss_pred             CeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCC------C-eEEEEecccCCcceeEeeCCCCceeEEEecC
Q 018697          190 SSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADE------S-GIHLWDLRMLKAPIQELPGHTHWTWAVCCNP  262 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  262 (351)
                      ..|++||+.+++.+..+....+..++|+|++  +++++..+      . ...+|.+.. ++ ...+..+ ..+..+  +|
T Consensus       152 ~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--sp  224 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DS  224 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EE
T ss_pred             ceEEEEECCCCeEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CC
Confidence            5789999988765233332147788999999  56656543      2 345555442 43 4444444 455544  99


Q ss_pred             CCCCeEEEeeCC--------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE-EEeCCCCCceEEEe
Q 018697          263 EYDGFILSAGTD--------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWSSREPWIFASL  333 (351)
Q Consensus       263 ~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~  333 (351)
                      +| .+|+.++.+        ..|.+||  .                   ++.......+...+.. +.|+ ++  +++++
T Consensus       225 dg-~~l~~~~~~~~~~~~~~~~l~~~d--~-------------------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~  279 (347)
T 2gop_A          225 DG-ERILLYGKPEKKYMSEHNKLYIYD--G-------------------KEVMGILDEVDRGVGQAKIKD-GK--VYFTL  279 (347)
T ss_dssp             CS-SCEEEEECCSSSCCCSSCEEEEEC--S-------------------SCEEESSTTCCSEEEEEEEET-TE--EEEEE
T ss_pred             CC-CEEEEEEccccCCccccceEEEEC--C-------------------CceEeccccCCcccCCccEEc-Cc--EEEEE
Confidence            99 777666543        3688888  4                   4444444556667886 9999 76  78899


Q ss_pred             eeCCeEEEeecC
Q 018697          334 SYDGRVVVESVK  345 (351)
Q Consensus       334 ~~dg~v~vw~~~  345 (351)
                      +.++.++|| +.
T Consensus       280 ~~~~~~~l~-~~  290 (347)
T 2gop_A          280 FEEGSVNLY-IW  290 (347)
T ss_dssp             EETTEEEEE-EE
T ss_pred             ecCCcEEEE-Ec
Confidence            999999999 75

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=3.2e-13  Score=121.90  Aligned_cols=292  Identities=11%  Similarity=0.069  Sum_probs=191.8

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC----CCCCceEEEEeecCCcceEEEE
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC----PFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~----~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      .+.+++++..++++.    .++.+.+++++....... ..+.. ......++|+    |++++++++.   ..++.|.|+
T Consensus       201 ~v~~SpDGr~lyv~~----~dg~V~viD~~~~t~~~v-~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n---~~~~~v~Vi  271 (567)
T 1qks_A          201 ISRLSASGRYLFVIG----RDGKVNMIDLWMKEPTTV-AEIKI-GSEARSIETSKMEGWEDKYAIAGA---YWPPQYVIM  271 (567)
T ss_dssp             EEEECTTSCEEEEEE----TTSEEEEEETTSSSCCEE-EEEEC-CSEEEEEEECCSTTCTTTEEEEEE---EETTEEEEE
T ss_pred             ceEECCCCCEEEEEc----CCCeEEEEECCCCCCcEe-EEEec-CCCCceeEEccccCCCCCEEEEEE---ccCCeEEEE
Confidence            456778888877764    478899999873333333 33333 3346799999    6999998874   456899999


Q ss_pred             EcccccCCCCCCcceeeeeeec----------ccc-ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           97 QIPELYGQLNSPQLERIAALDA----------HVG-KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      |..         +++.+..+..          |.. .+..+..++++...++....+|.|.++|........ +....  
T Consensus       272 D~~---------t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-v~~i~--  339 (567)
T 1qks_A          272 DGE---------TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TTEIS--  339 (567)
T ss_dssp             ETT---------TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EEEEE--
T ss_pred             ECC---------CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-eeeee--
Confidence            977         5566655432          222 677888899887534444667999999987532111 11111  


Q ss_pred             CcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeec-c---e-eEEEE-cCCCCCcEEEEec-CCCeEEEEe
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEH-A---H-VRNVD-YDTKKKHLLVTAA-DESGIHLWD  237 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~---~-v~~~~-~~~~~~~~l~~~~-~dg~i~i~d  237 (351)
                       ......++.|+|++++++++. .++.|.++|+.+++....+.. +   | -.... ++|++..+++++. .++.|.++|
T Consensus       340 -~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          340 -AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             -CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             -ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEec
Confidence             112466789999999988776 578999999999887666654 2   2 11222 5787554566554 568999999


Q ss_pred             cccC------CcceeEeeCCCCceeEEEecCCCCCeEEEeeC-------CCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          238 LRML------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-------DSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       238 ~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      ....      .+.++++......-..+..+|++ +++.....       ..+|.++|+.+....-             ..
T Consensus       419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g-------------~~  484 (567)
T 1qks_A          419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDG-------------SD  484 (567)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSS-------------SC
T ss_pred             CCCCCCccccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccccc-------------cC
Confidence            8752      23566666544444567899999 67766552       3589999998720000             00


Q ss_pred             ccceeec--------cccceEEEEEeCCCCCceEEEee----eCCeEEEeecCccc
Q 018697          305 SLLNSYS--------DYEDSVYGLAWSSREPWIFASLS----YDGRVVVESVKPFL  348 (351)
Q Consensus       305 ~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~----~dg~v~vw~~~~~~  348 (351)
                      .....+.        .....+..+.|+|+|..++++..    .++.|.|+|..+..
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence            1111221        12346889999999997777754    37999999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=4.7e-13  Score=120.80  Aligned_cols=220  Identities=13%  Similarity=0.068  Sum_probs=154.7

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcC--CCCCCcccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD--CSNKNAQVQSKQS  164 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~  164 (351)
                      ...++.|.++|..         +.+.+.++... ..+..+.|+|++++ +++++.|+.|.+||+.  +......+..   
T Consensus       173 ~~~~~~V~viD~~---------t~~v~~~i~~g-~~p~~v~~SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~---  238 (567)
T 1qks_A          173 LRDAGQIALIDGS---------TYEIKTVLDTG-YAVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKI---  238 (567)
T ss_dssp             ETTTTEEEEEETT---------TCCEEEEEECS-SCEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEEC---
T ss_pred             eCCCCeEEEEECC---------CCeEEEEEeCC-CCccceEECCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEec---
Confidence            3678999999988         66777777543 35668999999996 5556778999999995  4332222221   


Q ss_pred             cCcccceeeeEEC----CCCCcEEEee-cCCeEEEEEcccCCcCceeecc-------------eeEEEEcCCCCCcEEEE
Q 018697          165 SGMLHYLSGGAWD----PHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-------------HVRNVDYDTKKKHLLVT  226 (351)
Q Consensus       165 ~~~~~~v~~~~~~----~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~l~~  226 (351)
                       +  .....++|+    |++++++++. .++.|.++|..+.+.+..+...             ++..+..+++++.+++.
T Consensus       239 -G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          239 -G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             -C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             -C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence             1  146789999    6999988876 5699999999888877665421             26788889988867777


Q ss_pred             ecCCCeEEEEecccCCcc-eeEeeCCCCceeEEEecCCCCCeEE-EeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          227 AADESGIHLWDLRMLKAP-IQELPGHTHWTWAVCCNPEYDGFIL-SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      ..++|.|.++|....... +..+ ........+.|+|++ ++++ +...++.|.++|+.+                   +
T Consensus       316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t-------------------~  374 (567)
T 1qks_A          316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKE-------------------G  374 (567)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTT-------------------T
T ss_pred             ecCCCeEEEEecCCCccceeeee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCC-------------------C
Confidence            778899999998763322 2222 234556788999999 6554 555688999999998                   5


Q ss_pred             ccceeecc-----ccceEEEEE-eCCCCCceEEEee-eCCeEEEeecCc
Q 018697          305 SLLNSYSD-----YEDSVYGLA-WSSREPWIFASLS-YDGRVVVESVKP  346 (351)
Q Consensus       305 ~~~~~~~~-----~~~~v~~~~-~~~~~~~~l~s~~-~dg~v~vw~~~~  346 (351)
                      +.+..+..     |..  .... ++|++..++++.. .++.|.+++..+
T Consensus       375 kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          375 KLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            55544432     322  1222 5887554666654 568999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=2.5e-13  Score=111.81  Aligned_cols=204  Identities=11%  Similarity=-0.010  Sum_probs=152.7

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccc-cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccccc
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                      ++.++.|.+||.+         +++.+-++..+. ..+.++.+.|+|+  +++ +.++.|..||. +++....+...   
T Consensus        11 ~~~~~~v~~~d~~---------tG~~~w~~~~~~~~~~~~~~~~pdG~--ilv-s~~~~V~~~d~-~G~~~W~~~~~---   74 (276)
T 3no2_A           11 GSGWNKIAIINKD---------TKEIVWEYPLEKGWECNSVAATKAGE--ILF-SYSKGAKMITR-DGRELWNIAAP---   74 (276)
T ss_dssp             CTTCSEEEEEETT---------TTEEEEEEECCTTCCCCEEEECTTSC--EEE-ECBSEEEEECT-TSCEEEEEECC---
T ss_pred             eCCCCEEEEEECC---------CCeEEEEeCCCccCCCcCeEECCCCC--EEE-eCCCCEEEECC-CCCEEEEEcCC---
Confidence            5889999999987         678888887765 5789999999998  455 44678999998 55544443321   


Q ss_pred             CcccceeeeEECCCCCcEEEeec-CCeEEEEEcccCCcCceeec------ce--eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEH------AH--VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~------~~--v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                       ....+.++.+.++++.+++.+. ++.|..+|. +++.+..+..      .+  ...+++.++|. ++++...++.|..|
T Consensus        75 -~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~  151 (276)
T 3no2_A           75 -AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREI  151 (276)
T ss_dssp             -TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEE
T ss_pred             -CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEE
Confidence             1226788899999999998877 778888876 5665555431      11  55667889998 78889999999999


Q ss_pred             ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc--
Q 018697          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE--  314 (351)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  314 (351)
                      |..  ++.+.++... ..+.++...++| .+++++..++.|..+|..+                   ++.+..+..+.  
T Consensus       152 d~~--G~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~t-------------------G~~~w~~~~~~~~  208 (276)
T 3no2_A          152 APN--GQLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLES-------------------NRIVRRVNANDIE  208 (276)
T ss_dssp             CTT--SCEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTT-------------------CCEEEEEEGGGSB
T ss_pred             CCC--CCEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcC-------------------CcEEEEecCCCCC
Confidence            986  6677777754 455677888998 8899888888999999998                   77777765332  


Q ss_pred             ----ceEEEEEeCCCCCceEEEe
Q 018697          315 ----DSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       315 ----~~v~~~~~~~~~~~~l~s~  333 (351)
                          ..+.++...++|. ++++.
T Consensus       209 ~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             SCCCSEEEEEEECTTSC-EEEEE
T ss_pred             CccccccccceEcCCCC-EEEEe
Confidence                2377888888888 56555

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=1.9e-13  Score=128.01  Aligned_cols=236  Identities=8%  Similarity=-0.001  Sum_probs=148.2

Q ss_pred             CCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee---e-eeccccceeEEEecCCCCCcEEEEecCC----cEE
Q 018697           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA---A-LDAHVGKINCVLWWSSGRHDKLVSIDEE----NIF  146 (351)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~----~v~  146 (351)
                      |+|++++.....++.. .-.+|.....     .+..+.+.   . -.+|...+..++|||||+.++++...+|    .|+
T Consensus        81 ~dG~~~~~~~~~~~~~-~~~l~~~~~~-----~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~  154 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQN-QRVLYVQDSL-----EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK  154 (710)
T ss_dssp             EETTEEEEEEECSSCS-SCEEEEESST-----TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred             EECCEEEEEEEcCCce-EEEEEEEcCC-----CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence            8898888765332221 2245554421     01112111   1 1234456889999999996444444444    899


Q ss_pred             EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe----------------EEEEEcccCCcC--ceeec
Q 018697          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS----------------VQFWDLRSMGKT--NSIEH  208 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~~--~~~~~  208 (351)
                      +||+.++.........      ..+.+++|+||++.|+.++.++.                |++|++.+++..  ..+..
T Consensus       155 v~d~~tg~~~~~~~~~------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~  228 (710)
T 2xdw_A          155 FMKVDGAKELPDVLER------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF  228 (710)
T ss_dssp             EEETTTTEEEEEEEEE------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             EEECCCCCCCcccccC------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence            9999875433222211      13678999999999999887655                999999877633  22221


Q ss_pred             -ce---eEEEEcCCCCCcEEEEecC----CCeEEEEeccc------CCcceeEeeCCCCceeEEEecCCCCCeEEEeeC-
Q 018697          209 -AH---VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRM------LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-  273 (351)
Q Consensus       209 -~~---v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-  273 (351)
                       .+   +..+.|+|+|++++++...    +..|++||+..      .......+..+...+.. .|+|+| ..|+..+. 
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s~~  306 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG-TVFTFKTNR  306 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET-TEEEEEECT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccC-CEEEEEECC
Confidence             12   7789999999954444431    56899999975      32246667666666655 488988 55544433 


Q ss_pred             C---CeEEEEEcCCCCCCCCCCcccccCCcccccc--cceeeccccc--eEEEEEeCCCCCceEEEeeeCCeE--EEeec
Q 018697          274 D---STVNLWLVSTSNHDELPSESLVESPNQRANS--LLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRV--VVESV  344 (351)
Q Consensus       274 d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v--~vw~~  344 (351)
                      +   +.|.+||+..                   +.  ....+..|..  .+..++|++++. ++++...|+..  .+|++
T Consensus       307 ~~~~~~l~~~d~~~-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          307 HSPNYRLINIDFTD-------------------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             TCTTCEEEEEETTS-------------------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEET
T ss_pred             CCCCCEEEEEeCCC-------------------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEEC
Confidence            3   3699999876                   32  2334444433  688899997665 88888889865  55565

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=1.2e-13  Score=115.26  Aligned_cols=202  Identities=9%  Similarity=0.009  Sum_probs=140.2

Q ss_pred             eeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018697          112 RIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (351)
Q Consensus       112 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (351)
                      .+..+..+.....+++|+|+++.+++++..++.|..|+..++  . ....    .+...+.+++++|+++.+++...++.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~~~~----~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-SPEM----HPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-EEEE----SSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-EEEE----CCCCCcceeeECCCCcEEEEecCCCe
Confidence            334455566677899999999865666677899999999864  2 2221    12346889999999987666666789


Q ss_pred             EEEEEcccCCcCceeec--ce----eEEEEcCCCCCcEEEE----ec-------------CCCeEEEEecccCCcceeEe
Q 018697          192 VQFWDLRSMGKTNSIEH--AH----VRNVDYDTKKKHLLVT----AA-------------DESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~--~~----v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~  248 (351)
                      |.+||..+++.......  ..    +..++++|+|+ ++++    |.             ..+.|..++..  + .+..+
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~  167 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAP  167 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEE
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEe
Confidence            99999977764332211  11    67899999998 6776    33             13456555543  3 34555


Q ss_pred             eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc---ceeeccccceEEEEEeCCC
Q 018697          249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       249 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~  325 (351)
                      ..+......++|+|++ .++++.+.++.|.+||+...                  +..   ...+..+...+.+++++++
T Consensus       168 ~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~------------------g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNAR------------------GETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSS------------------SCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCC------------------CcCcCCCeEeeCCCCCCCeEEECCC
Confidence            5666778999999999 77788888899999999730                  222   1222234455678999999


Q ss_pred             CCceEEEeeeCCeEEEeecCc
Q 018697          326 EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |. ++++.  ++.|.+|+.+.
T Consensus       229 G~-l~v~~--~~~v~~~~~~g  246 (296)
T 3e5z_A          229 GL-IWASA--GDGVHVLTPDG  246 (296)
T ss_dssp             SC-EEEEE--TTEEEEECTTS
T ss_pred             CC-EEEEc--CCeEEEECCCC
Confidence            98 66665  78999999753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=4.6e-13  Score=125.04  Aligned_cols=235  Identities=11%  Similarity=0.021  Sum_probs=146.8

Q ss_pred             CCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee----eccccceeEEEecCCCCCcEEEEec----CCcE
Q 018697           74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL----DAHVGKINCVLWWSSGRHDKLVSID----EENI  145 (351)
Q Consensus        74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~----d~~v  145 (351)
                      +|+|++++.....++. ..-.||.....     .+..+.+...    .+|...+..++|||||+.++++.+.    +..|
T Consensus        76 ~~dG~~~~~~~~~~~~-~~~~l~~~~~~-----~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i  149 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDK-EKAILYWRQGE-----SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVL  149 (695)
T ss_dssp             EEETTEEEEEEECTTC-SSCEEEEEEST-----TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEE
T ss_pred             EEECCEEEEEEEcCCC-eEEEEEEEcCC-----CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEE
Confidence            4889888876533322 13455655421     1111222111    2455678999999999964444433    3579


Q ss_pred             EEEEcCCCCCC-cccccccccCcccceeeeEECCCCCcEEEeecCCe-------------EEEEEcccCCcC--ceeec-
Q 018697          146 FLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS-------------VQFWDLRSMGKT--NSIEH-  208 (351)
Q Consensus       146 ~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~--~~~~~-  208 (351)
                      ++||+.++... .....    ..  ....++|+||++.|+.++.+..             |++|++.+++..  ..+.. 
T Consensus       150 ~v~dl~tg~~~~~~~~~----~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~  223 (695)
T 2bkl_A          150 HVIDVDSGEWSKVDVIE----GG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT  223 (695)
T ss_dssp             EEEETTTCCBCSSCCBS----CC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred             EEEECCCCCCcCCcccC----cc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence            99999976543 11111    10  1268899999999999887665             999999887632  22221 


Q ss_pred             ce---eEEEEcCCCCCcEEEEecCC-C--eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee---CCCeEEE
Q 018697          209 AH---VRNVDYDTKKKHLLVTAADE-S--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---TDSTVNL  279 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~i  279 (351)
                      .+   +..+.|+|+|++++++...+ +  .|+++|... + ....+..+...+....+ ++| .+++...   .++.|.+
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~  299 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFE  299 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEE
Confidence            11   78999999999544444333 2  566665543 2 45556656666666666 777 4555544   2578999


Q ss_pred             EEcCCCCCCCCCCcccccCCccccccc--ceeecc-c-cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSL--LNSYSD-Y-EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ||+..                   +..  ...+.. + ...+..++|+ ++. ++++...|+..+||.++
T Consensus       300 ~d~~~-------------------~~~~~~~~l~~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          300 VDPAK-------------------PARASWKEIVPEDSSASLLSVSIV-GGH-LSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EBTTB-------------------CSGGGCEEEECCCSSCEEEEEEEE-TTE-EEEEEEETTEEEEEEEE
T ss_pred             EeCCC-------------------CCccCCeEEecCCCCCeEEEEEEE-CCE-EEEEEEECCEEEEEEEe
Confidence            99876                   321  223322 2 4467888888 454 88999999998888654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=1.2e-11  Score=102.88  Aligned_cols=272  Identities=7%  Similarity=-0.031  Sum_probs=168.5

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      ..+..++++. +.++.   ..++.+..++..   +.+....+..+...+..+++.+++...++.    ..++.|..|+..
T Consensus        23 ~~i~~d~~g~-l~v~~---~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~v~~~d~~   91 (300)
T 2qc5_A           23 YGITSSEDGK-VWFTQ---HKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTE----NGANKIGKLSKK   91 (300)
T ss_dssp             EEEEECTTSC-EEEEE---TTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECTT
T ss_pred             ceeeECCCCC-EEEEc---CCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEe----cCCCeEEEECCC
Confidence            3444455543 44432   234666555533   333322223344678999999988766553    456788888865


Q ss_pred             cccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC
Q 018697          100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  179 (351)
                      .        .. ....+......+.++++.+++. ++++...++.|..++.. +. ......   ......+.++++.++
T Consensus        92 g--------~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~-~~~~~~---~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           92 G--------GF-TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT-IYEYDL---PNKGSYPAFITLGSD  156 (300)
T ss_dssp             S--------CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC-EEEEEC---SSTTCCEEEEEECTT
T ss_pred             C--------Ce-EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC-EEEccC---CCCCCCceeEEECCC
Confidence            1        11 1112222346788999999887 34444557889999876 32 221111   112236889999999


Q ss_pred             CCcEEEeecCCeEEEEEcccCCcCceeec-c--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee-EeeCCCCc
Q 018697          180 DVNAVAATCESSVQFWDLRSMGKTNSIEH-A--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHW  254 (351)
Q Consensus       180 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~  254 (351)
                      ++..++...++.|..+|. +++... +.. .  . +..+++++++. ++++....+.|.+||..  +.... .+..+...
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~  231 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTT--GEISEYDIPTPNAR  231 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT--CCEEEEECSSTTCC
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCC--CcEEEEECCCCCCC
Confidence            885555555788999998 444332 221 1  1 88999999987 77766677889999983  33222 22334566


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      +.+++++++| .++++...++.|..||...                   ......+......+.+++++++|. ++++..
T Consensus       232 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g-------------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~  290 (300)
T 2qc5_A          232 PHAITAGKNS-EIWFTEWGANQIGRITNDN-------------------TIQEYQLQTENAEPHGITFGKDGS-VWFALK  290 (300)
T ss_dssp             EEEEEECSTT-CEEEEETTTTEEEEECTTS-------------------CEEEEECCSTTCCCCCEEECTTSC-EEEECS
T ss_pred             ceEEEECCCC-CEEEeccCCCeEEEECCCC-------------------cEEEEECCccCCccceeEeCCCCC-EEEEcc
Confidence            8899999999 7777766678999999842                   111111222344578999999988 666555


Q ss_pred             eCCeEEEeecC
Q 018697          335 YDGRVVVESVK  345 (351)
Q Consensus       335 ~dg~v~vw~~~  345 (351)
                       . .|..++.+
T Consensus       291 -~-~i~~~~p~  299 (300)
T 2qc5_A          291 -C-KIGKLNLN  299 (300)
T ss_dssp             -S-EEEEEEEC
T ss_pred             -C-ceEEeCCC
Confidence             4 67666653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=1.2e-12  Score=113.94  Aligned_cols=237  Identities=6%  Similarity=0.031  Sum_probs=157.1

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--  143 (351)
                      .....++|+++++.+++    ...++.|++|+..         .......... ..... ++|++++.. ++++..++  
T Consensus       131 ~~P~~la~d~~g~lyv~----d~~~~~I~~id~~---------~g~~~~~~~~-~~~~~-ia~~~~g~~-l~~~d~~~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAY----QRDDPRVRLISVD---------DNKVTTVHPG-FKGGK-PAVTKDKQR-VYSIGWEGTH  194 (409)
T ss_dssp             CCEEEEEECSTTEEEEE----ETTTTEEEEEETT---------TTEEEEEEET-CCBCB-CEECTTSSE-EEEEBSSTTC
T ss_pred             CCceEEEEeCCCCEEEE----ecCCCcEEEEECC---------CCEEEEeecc-CCCCc-eeEecCCCc-EEEEecCCCc
Confidence            46778999998874444    2567899999987         3333333333 23334 999999985 45554433  


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee----ecce--e--E-EE
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI----EHAH--V--R-NV  214 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~--v--~-~~  214 (351)
                      .|.+++.......... ..........+.+++++|++..|+++..++.|+.||..++... .+    ..+.  .  . .+
T Consensus       195 ~I~~~d~~~~~~~~~~-g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRI-GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             EEEEEEGGGTTCEEEE-EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEE
T ss_pred             eEEEEEcCCCceeEEe-eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccE
Confidence            7888888754321111 0000112236788999996666777777889999999876532 22    1111  2  3 99


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC---------------CceeEEEecCCCCCeEEEee-CCCeEE
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------------HWTWAVCCNPEYDGFILSAG-TDSTVN  278 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~l~s~~-~dg~i~  278 (351)
                      +|+|++.+++++...++.|+.|+...  . +..+.++.               .....++++|+| .++++-. .++.|+
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~  348 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLR  348 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEE
Confidence            99996555788778889999999763  2 33443332               347899999999 7888877 889999


Q ss_pred             EEEcCCCCCCCCCCcccccCCcccccccceeeccc---------------cceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY---------------EDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .|+...                   +. +.++.++               -....++++++++. ++++-..++.|+.++
T Consensus       349 ~~~~~~-------------------G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          349 KLDILD-------------------GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYA  407 (409)
T ss_dssp             EEETTT-------------------TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEE
T ss_pred             EEECCC-------------------CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEE
Confidence            999765                   22 1222111               23578999999976 888888889999887


Q ss_pred             cC
Q 018697          344 VK  345 (351)
Q Consensus       344 ~~  345 (351)
                      ++
T Consensus       408 ~e  409 (409)
T 3hrp_A          408 VE  409 (409)
T ss_dssp             EC
T ss_pred             eC
Confidence            63

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.59  E-value=1.6e-12  Score=109.92  Aligned_cols=226  Identities=8%  Similarity=-0.028  Sum_probs=146.3

Q ss_pred             eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEE
Q 018697           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL  147 (351)
Q Consensus        68 v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~i  147 (351)
                      ....+|+|+++.++.+   +..++.|.+|+..         ..+. ..+ .....+.+++|++++.  ++++.. ..|.+
T Consensus        51 ~egp~~~~~~~~l~~~---d~~~~~i~~~d~~---------~~~~-~~~-~~~~~v~~i~~~~dg~--l~v~~~-~gl~~  113 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWF---NILERELHELHLA---------SGRK-TVH-ALPFMGSALAKISDSK--QLIASD-DGLFL  113 (326)
T ss_dssp             EEEEEEETTTTEEEEE---EGGGTEEEEEETT---------TTEE-EEE-ECSSCEEEEEEEETTE--EEEEET-TEEEE
T ss_pred             CcCCeEeCCCCEEEEE---ECCCCEEEEEECC---------CCcE-EEE-ECCCcceEEEEeCCCe--EEEEEC-CCEEE
Confidence            4577899987777665   3567789999976         2222 223 2346799999999998  444443 45999


Q ss_pred             EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec------CCeEEEEEcccCCcCceeecc-e-eEEEEcCCC
Q 018697          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTK  219 (351)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~  219 (351)
                      ||..++.. ..+...........+.+++++|+++.+++...      .+.|..+|  +++. ..+... . ...++|+|+
T Consensus       114 ~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          114 RDTATGVL-TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPD  189 (326)
T ss_dssp             EETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTT
T ss_pred             EECCCCcE-EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCC
Confidence            99876442 11211110111236889999999986554432      24555555  3432 222212 2 789999999


Q ss_pred             CCcEEEEecCCCeEEEEecc--cCC-c-----ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          220 KKHLLVTAADESGIHLWDLR--MLK-A-----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~--~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                      ++.++++...++.|.+||+.  + + .     .+..+.........++++++| .++++...++.|..||. .       
T Consensus       190 g~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~-------  259 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-D-------  259 (326)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-T-------
T ss_pred             CCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-C-------
Confidence            98555666678899999985  3 2 2     122222234567889999999 77777666788999998 4       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeC-CCCCceEEEeeeC
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD  336 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d  336 (351)
                                  ++.+..+..+...+++++|+ +++..++++...+
T Consensus       260 ------------g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          260 ------------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ------------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             ------------CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence                        45566666666679999998 8877555555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=2.3e-11  Score=104.48  Aligned_cols=276  Identities=8%  Similarity=-0.101  Sum_probs=166.3

Q ss_pred             CCcceEEEeeeeeCCCC--EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEEEE
Q 018697           26 TDHTSFLTGTLSLKEEN--EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQ   97 (351)
Q Consensus        26 ~~~~~~~~g~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~vw~   97 (351)
                      ++.+++++.... ..++  .+.+++...  ..+. ..+..-..  ..++++|+++.++++...      +..++.|.+||
T Consensus        30 ~~~~~~yv~~~~-~~~~~~~v~v~D~~t--~~~~-~~i~~g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           30 ADGRRSYINLPA-HHSAIIQQWVLDAGS--GSIL-GHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCEEEEeCCc-ccCCccEEEEEECCC--CeEE-EEecCCCC--CCeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            566666665320 1111  566666654  3333 33332222  299999999999886310      12367899999


Q ss_pred             cccccCCCCCCcceeeeeeecc-------ccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccccccccCccc
Q 018697           98 IPELYGQLNSPQLERIAALDAH-------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      ..         +.+.+..+...       ......+.|+|+|++++++... ++.|.++| .+++....+....      
T Consensus       104 ~~---------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------  167 (373)
T 2mad_H          104 PV---------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------  167 (373)
T ss_pred             CC---------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------
Confidence            87         45555544321       1234578999999975555433 58899999 8654332201111      


Q ss_pred             ceeeeEECCCCC-cEEEeecCCeEEEEEcccCCcCceee-----cce---eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          170 YLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIE-----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       170 ~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                        .++.+.|+++ .+++.+.||.+.++|. +++......     ...   .....+.+++..++++. ..+.+.+.|+..
T Consensus       168 --~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~  243 (373)
T 2mad_H          168 --TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISA  243 (373)
T ss_pred             --ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccC
Confidence              1234455554 3455678999999999 766542221     111   23355666665344444 678999999864


Q ss_pred             CC-cceeEeeC----------CCCceeEEEecCCCCCeEEEeeC----------CCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          241 LK-APIQELPG----------HTHWTWAVCCNPEYDGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       241 ~~-~~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      .. ..+..+..          .......+.++|++ ..++.+..          .+.|.++|..+               
T Consensus       244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t---------------  307 (373)
T 2mad_H          244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLV---------------  307 (373)
T ss_pred             CcceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCC---------------
Confidence            22 11222211          01223447889998 55544432          35799999998               


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEee-eCCeEEEeecCccc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS-YDGRVVVESVKPFL  348 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~~  348 (351)
                          .+.+..+... ....+++|+|||+.+++++. .++.|.++|+.+..
T Consensus       308 ----~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          308 ----GQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ----CEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence                7777777543 35789999999984555655 58999999997644

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=2.3e-11  Score=101.27  Aligned_cols=237  Identities=6%  Similarity=-0.048  Sum_probs=159.6

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      ....+.++++.+++...++.    ..++.|.+|+...        .... ..+..+...+.++++.+++. ++++...++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~----~~~~~v~~~~~~~--------~~~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~   83 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQ----HKANKISSLDQSG--------RIKE-FEVPTPDAKVMCLIVSSLGD-IWFTENGAN   83 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEE----TTTTEEEEECTTS--------CEEE-EECSSTTCCEEEEEECTTSC-EEEEETTTT
T ss_pred             CCCCcceeeECCCCCEEEEc----CCCCeEEEECCCC--------ceEE-EECCCCCCcceeEEECCCCC-EEEEecCCC
Confidence            45678899999998766653    4678899998651        1111 12223346788999999987 344445578


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-ee-cce-eEEEEcCCCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IE-HAH-VRNVDYDTKK  220 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~-~~~-v~~~~~~~~~  220 (351)
                      .|..+|.. +.. ......   .....+.++++.+++..+++...++.|..+|.. ++.... +. ... +..+++.+++
T Consensus        84 ~v~~~d~~-g~~-~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g  157 (300)
T 2qc5_A           84 KIGKLSKK-GGF-TEYPLP---QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN  157 (300)
T ss_dssp             EEEEECTT-SCE-EEEECS---STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred             eEEEECCC-CCe-EEecCC---CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence            89999987 332 211111   112368899999988866666667899999987 543321 11 112 8999999999


Q ss_pred             CcEEEEecCCCeEEEEecccCCccee-EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      . ++++...++.|..||..  ++... ....+...+..++++++| .++++....+.|.+||..                
T Consensus       158 ~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~----------------  217 (300)
T 2qc5_A          158 A-LWFTENQNNSIGRITNT--GKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT----------------  217 (300)
T ss_dssp             S-EEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT----------------
T ss_pred             C-EEEEecCCCeEEEECCC--CcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC----------------
Confidence            8 77777778899999983  33222 122344568899999998 777777777889999983                


Q ss_pred             cccccccce-eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          300 NQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       300 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                          +.... ....+...+.+++++++|. ++++...++.|..|+..
T Consensus       218 ----g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          218 ----GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND  259 (300)
T ss_dssp             ----CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred             ----CcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC
Confidence                22221 1223345688999999988 77776667889998864

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=2e-12  Score=120.61  Aligned_cols=248  Identities=10%  Similarity=0.060  Sum_probs=153.5

Q ss_pred             cCCcceeeeeeCCCCCceEEEEeecC-CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           63 SHPNEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        63 ~h~~~v~~i~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      +|...+..++||||+++|+.+...+| ....|++||+.         +++.+.. ..+......++|+ |++. ++.++.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~---------tg~~~~~-~~~~~k~~~~~Ws-Dg~~-l~y~~~  193 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE---------SKQPLET-PLKDVKFSGISWL-GNEG-FFYSSY  193 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT---------TCSEEEE-EEEEEESCCCEEE-TTTE-EEEEES
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC---------CCCCCcc-ccCCceeccEEEe-CCCE-EEEEEe
Confidence            35567889999999999887654333 34689999998         3443322 1111123578899 9986 444443


Q ss_pred             C-------------CcEEEEEcCCCCCCcccccccccC-cccceeeeEECCCCCcEEEeec----CCeEEEEEcccCC-c
Q 018697          142 E-------------ENIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMG-K  202 (351)
Q Consensus       142 d-------------~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~  202 (351)
                      +             ..|++|++.+.......+... .. +.....++.|+|++++|+....    ...|+++|+.++. .
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~  272 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP  272 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence            4             349999998654322222211 12 2234678899999998876542    3589999998764 3


Q ss_pred             Cceeecce--eEEEEcCCCCCcEEEEecCC---CeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCeEEEeeCCC-
Q 018697          203 TNSIEHAH--VRNVDYDTKKKHLLVTAADE---SGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-  275 (351)
Q Consensus       203 ~~~~~~~~--v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-  275 (351)
                      ...+....  .... +++++..+++....+   +.|..+|+..... ..+.+..|...+.  .|++++..++++...++ 
T Consensus       273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred             eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence            33443222  3333 566666566666544   6899999886331 2356666766665  88999833444444555 


Q ss_pred             -eEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCceEEEeee---CCeEEEeecCc
Q 018697          276 -TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWIFASLSY---DGRVVVESVKP  346 (351)
Q Consensus       276 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~vw~~~~  346 (351)
                       .|++||+..                   .. ...+. .....+..+.+++++..++++.+.   -+.|..||+.+
T Consensus       350 ~~l~~~d~~g-------------------~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          350 ARVEQFDYEG-------------------KR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EEEEEECTTS-------------------CE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             eEEEEEECCC-------------------Ce-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence             678888764                   22 22222 234567788889888844444432   27888888754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=4.3e-12  Score=104.11  Aligned_cols=233  Identities=12%  Similarity=-0.021  Sum_probs=149.5

Q ss_pred             eeecCCCCcceEEE-eeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           20 SDVKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        20 ~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      ..+..++++. +++ +.   ..++.|..++.  .+.... .....+...+.++++.+++..+++.    . ++.|.+|+.
T Consensus        27 ~~i~~~~~g~-l~v~~~---~~~~~i~~~~~--~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~----~-~~~i~~~d~   94 (270)
T 1rwi_B           27 SGVAVDSAGN-VYVTSE---GMYGRVVKLAT--GSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTD----F-NNRVVTLAA   94 (270)
T ss_dssp             EEEEECTTCC-EEEEEC---SSSCEEEEECC-------E-ECCCCSCCSCCCEEECTTCCEEEEE----T-TTEEEEECT
T ss_pred             cceEECCCCC-EEEEcc---CCCCcEEEecC--CCcccc-eEeeCCcCCcceeEECCCCCEEEEc----C-CCEEEEEeC
Confidence            3445556654 444 32   23466665543  222211 1112334578899999988744442    3 778999997


Q ss_pred             ccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           99 PELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ..         . ....+. .....+.++++.+++. ++++...++.|.+|+..+....  ....   .....+.+++++
T Consensus        95 ~~---------~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~--~~~~---~~~~~p~~i~~~  158 (270)
T 1rwi_B           95 GS---------N-NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQT--VLPF---TGLNDPDGVAVD  158 (270)
T ss_dssp             TC---------S-CCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCE--ECCC---CSCCSCCCEEEC
T ss_pred             CC---------c-eEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeE--eecc---ccCCCceeEEEe
Confidence            62         1 122222 2235688999999987 4555566789999976532211  1111   112357889999


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCc
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHW  254 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~  254 (351)
                      ++++.+++...++.|.+||............. . +..++++++|. ++++...++.|.+||... .. ..... .+...
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~  235 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS-TT-STVLPFTGLNT  235 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTC-SC-CEECCCCSCSC
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCC-Cc-ceeeccCCCCC
Confidence            99985555566789999998765433222212 2 88999999996 788777889999999875 32 22222 23356


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +.+++++|+| .++++...++.|++++...
T Consensus       236 p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          236 PLAVAVDSDR-TVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEEECTTC-CEEEEEGGGTEEEEECCCG
T ss_pred             ceeEEECCCC-CEEEEECCCCEEEEEcCCC
Confidence            8999999999 8888889999999999986

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=5.3e-12  Score=105.71  Aligned_cols=235  Identities=8%  Similarity=-0.040  Sum_probs=149.0

Q ss_pred             eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-
Q 018697           61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-  139 (351)
Q Consensus        61 ~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-  139 (351)
                      +...........|+|+++.|+.+   +..++.|..|+..         . + ...+..+...+..++++++|+  ++++ 
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~---d~~~~~i~~~~~~---------g-~-~~~~~~~~~~~~gl~~d~dG~--l~v~~  103 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWS---DLVGRRVLGWRED---------G-T-VDVLLDATAFTNGNAVDAQQR--LVHCE  103 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEE---ETTTTEEEEEETT---------S-C-EEEEEESCSCEEEEEECTTSC--EEEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEE---ECCCCEEEEEeCC---------C-C-EEEEeCCCCccceeeECCCCC--EEEEE
Confidence            33445567789999999866665   3677889999864         1 1 334555667789999999998  4554 


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE----eec-------------CCeEEEEEcccCCc
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA----ATC-------------ESSVQFWDLRSMGK  202 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~  202 (351)
                      ..++.|.+|+.+ +. ...+...........+.+++++|+++..++    +..             .+.|..+|..+++.
T Consensus       104 ~~~~~v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          104 HGRRAITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             TTTTEEEEECTT-SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             CCCCEEEEECCC-CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            445789999975 22 222211111111235778999999987775    321             25677788766654


Q ss_pred             Cceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEecccCCccee---Ee-eCCCCceeEEEecCCCCCeEEEe
Q 018697          203 TNSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRMLKAPIQ---EL-PGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       203 ~~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      .... ... ...++|+|+++ .|+.+...      +.|++|++.. .. +.   .+ .........++++++| ++.+ +
T Consensus       182 ~~~~-~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~-~~-l~~~~~~~~~~~~~pdgi~~d~~G-~lwv-~  255 (305)
T 3dr2_A          182 QRMA-DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRD-GA-LHDRRHFASVPDGLPDGFCVDRGG-WLWS-S  255 (305)
T ss_dssp             EEEE-EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEET-TE-EEEEEEEECCSSSCCCSEEECTTS-CEEE-C
T ss_pred             EEEe-cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecC-CC-ccCCeEEEECCCCCCCeEEECCCC-CEEE-e
Confidence            3332 122 88999999998 45544443      7899999874 22 21   11 1123445678999999 6444 4


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ..+ .|.+|+..                    ++.+..+..+. .+.+++|+|+++ .|..++.++ +..++
T Consensus       256 ~~~-gv~~~~~~--------------------g~~~~~~~~~~-~~~~~~f~~d~~-~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          256 SGT-GVCVFDSD--------------------GQLLGHIPTPG-TASNCTFDQAQQ-RLFITGGPC-LWMLP  303 (305)
T ss_dssp             CSS-EEEEECTT--------------------SCEEEEEECSS-CCCEEEECTTSC-EEEEEETTE-EEEEE
T ss_pred             cCC-cEEEECCC--------------------CCEEEEEECCC-ceeEEEEeCCCC-EEEEEcCCe-EEEEE
Confidence            444 48999984                    45565665444 488999999888 455555444 43333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=5.2e-12  Score=106.85  Aligned_cols=223  Identities=8%  Similarity=-0.016  Sum_probs=146.4

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP  108 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~  108 (351)
                      .+++++..   .++.+.+++.....  +. ..+ ........+++++++ .++++   ...++.|.+||..         
T Consensus        54 ~~lyv~~~---~~~~v~viD~~t~~--~~-~~i-~~~~~p~~i~~~~~g-~lyv~---~~~~~~v~~iD~~---------  113 (328)
T 3dsm_A           54 GIGWIVVN---NSHVIFAIDINTFK--EV-GRI-TGFTSPRYIHFLSDE-KAYVT---QIWDYRIFIINPK---------  113 (328)
T ss_dssp             TEEEEEEG---GGTEEEEEETTTCC--EE-EEE-ECCSSEEEEEEEETT-EEEEE---EBSCSEEEEEETT---------
T ss_pred             CEEEEEEc---CCCEEEEEECcccE--EE-EEc-CCCCCCcEEEEeCCC-eEEEE---ECCCCeEEEEECC---------
Confidence            44444432   35777777765432  22 222 345678899999988 55554   2368899999987         


Q ss_pred             cceeeeeeeccc-----cceeEEEecCCCCCcEEEEe-cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc
Q 018697          109 QLERIAALDAHV-----GKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN  182 (351)
Q Consensus       109 ~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  182 (351)
                      +.+....+....     .....+++  ++..++++.. .++.|.++|+.++.....+...      .....+.++|+++.
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l  185 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKM  185 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEE
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCE
Confidence            555555554332     14556777  3444444444 4889999999875433332221      14578899999986


Q ss_pred             EEEeecC----------CeEEEEEcccCCcCceeec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee-E-
Q 018697          183 AVAATCE----------SSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-E-  247 (351)
Q Consensus       183 l~~~~~d----------~~i~iwd~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-  247 (351)
                      +++...+          +.|.++|..+++....+..  +. +..++++|+++ .++++..  .|.+||..+ .+... . 
T Consensus       186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t-~~~~~~~~  261 (328)
T 3dsm_A          186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEA-DRVPVRPF  261 (328)
T ss_dssp             EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTC-SSCCSSCS
T ss_pred             EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCC-Cceeeeee
Confidence            6665544          7899999998876666553  23 89999999998 4555544  899999876 33221 1 


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEe----eCCCeEEEEEcC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSA----GTDSTVNLWLVS  283 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~  283 (351)
                      +.........++++|++..++++.    ..++.|.+||..
T Consensus       262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            121245688999999553777776    678899999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=8.3e-12  Score=106.11  Aligned_cols=281  Identities=8%  Similarity=-0.040  Sum_probs=171.0

Q ss_pred             cCCCCcceEEEeeee-eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEe------ecCCcceEEE
Q 018697           23 KADTDHTSFLTGTLS-LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF------STGESYGAAI   95 (351)
Q Consensus        23 ~~~~~~~~~~~g~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~------~~~~d~~i~v   95 (351)
                      ...|+..++++.... ....+.+.+++...  ..+. ..+..-..+ . ++++|+++.++++..      .|..++.|.+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~-~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVI-GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEE-EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCC--CeEE-EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            346889999988653 12246777776554  3333 333322333 4 999999999887631      0123578999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccc-------cceeEEEecCCCCCcEEEEe-cCCcEEEEEcCCCCCCcccccccccCc
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ||..         +.+.+.++....       .....+.++|+|++++++.. .++.|.++|+.+.+....+.. .  + 
T Consensus       114 iD~~---------t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~--g-  180 (386)
T 3sjl_D          114 FDPV---------TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-P--D-  180 (386)
T ss_dssp             ECTT---------TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-C--S-
T ss_pred             EECC---------CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-C--C-
Confidence            9998         566666664321       24567899999997555543 378999999997544333321 1  1 


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEccc-CCcCc----eeec--ce-eEEEEc-CCCCCcEEEEecCCCeEEEEec
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-MGKTN----SIEH--AH-VRNVDY-DTKKKHLLVTAADESGIHLWDL  238 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~----~~~~--~~-v~~~~~-~~~~~~~l~~~~~dg~i~i~d~  238 (351)
                         . ...+....+.+++.+.||.+.+.++.+ ++...    .+..  .. ....+| .++|+ +++ .+.+|.|++.|+
T Consensus       181 ---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          181 ---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             ---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEEC
T ss_pred             ---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEE-EeCCCEEEEEEC
Confidence               1 112222234456667777777777765 33311    1111  11 223455 46776 444 455799999999


Q ss_pred             ccCC-cceeEeeC----------CCCceeEEEecCCCCCeEEEeeC----------CCeEEEEEcCCCCCCCCCCccccc
Q 018697          239 RMLK-APIQELPG----------HTHWTWAVCCNPEYDGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       239 ~~~~-~~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      .... +.+..+..          .......++++|++ ..++....          .+.|.+.|+.+             
T Consensus       255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t-------------  320 (386)
T 3sjl_D          255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKT-------------  320 (386)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTT-------------
T ss_pred             CCCcceeecceeccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCC-------------
Confidence            7522 12222210          11233457788988 55544432          25799999998             


Q ss_pred             CCcccccccceeeccccceEEEEEeCCCCC-ceEEEeeeCCeEEEeecCccc
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~  348 (351)
                            .+.+..+... ..++++++++|++ .++++...++.|.++|..+..
T Consensus       321 ------~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          321 ------GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             ------CCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ------CeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence                  7888777543 3688999999986 344555669999999987643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=8.8e-12  Score=117.22  Aligned_cols=239  Identities=10%  Similarity=0.034  Sum_probs=143.2

Q ss_pred             CCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee----eeccccceeEEEecCCCCCcEEEEecCC----cE
Q 018697           74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA----LDAHVGKINCVLWWSSGRHDKLVSIDEE----NI  145 (351)
Q Consensus        74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~d~----~v  145 (351)
                      +|+|++++.....++.+ .-.+|.......  ..+..+.+..    -.+|...+..++|||||+.++++...+|    .|
T Consensus       115 ~pdG~~~~~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i  191 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMN-QSQLLVRPADAP--VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV  191 (741)
T ss_dssp             EEETTEEEEEEECSSCS-SCEEEEEETTSC--TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred             EEECCEEEEEEEcCCCe-EEEEEEEcCCcc--CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence            48999988775333322 356676542100  0011121110    1234447889999999996444444433    59


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC--------------eEEEEEcccCCcC--ceeec-
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES--------------SVQFWDLRSMGKT--NSIEH-  208 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~~~--~~~~~-  208 (351)
                      ++||+.++........      ...+..++|+|| +.|+.++.++              .|++|++.++...  ..+.. 
T Consensus       192 ~v~dl~tg~~~~~~~~------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~  264 (741)
T 1yr2_A          192 KFVGVADGKPLADELK------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP  264 (741)
T ss_dssp             EEEETTTCCEEEEEEE------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             EEEECCCCCCCCccCC------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC
Confidence            9999997654321111      112468899999 9888887654              3889998776532  12221 


Q ss_pred             ce---eEEEEcCCCCCcEEEEecC----CCeEEEEecccCCcc-eeEeeCCCCceeEEEecCCCCCeEEEeeC----CCe
Q 018697          209 AH---VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAP-IQELPGHTHWTWAVCCNPEYDGFILSAGT----DST  276 (351)
Q Consensus       209 ~~---v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~  276 (351)
                      .+   +..+.|+|+|++++++...    ...|++||+...... ...+..+...+.... +|+| ..|+..+.    ++.
T Consensus       265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~  342 (741)
T 1yr2_A          265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKK  342 (741)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCE
Confidence            11   7889999999954444432    348999999863112 556665655555553 4888 66665554    345


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCccccc--ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRAN--SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |.+||+..                   +  .....+..+...+.+++|+ ++. ++++...|+..+||.++
T Consensus       343 l~~~d~~~-------------------~~~~~~~l~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          343 IVRVDLSG-------------------STPRFDTVVPESKDNLESVGIA-GNR-LFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECSS-------------------SSCEEEEEECCCSSEEEEEEEE-BTE-EEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCC-------------------CccccEEEecCCCCeEEEEEEE-CCE-EEEEEEECCEEEEEEEe
Confidence            99999875                   2  1122233445557778887 344 88899999988887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.3e-11  Score=106.86  Aligned_cols=279  Identities=8%  Similarity=-0.065  Sum_probs=167.7

Q ss_pred             CCcceEEEeeeeeCCC-CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEEEEc
Q 018697           26 TDHTSFLTGTLSLKEE-NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQI   98 (351)
Q Consensus        26 ~~~~~~~~g~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~vw~~   98 (351)
                      ++..++++........ +.+.+++...  .++. ..+..-..+  .++++|+++.++++...      |..++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv-~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST--GRIL-GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT--TEEE-EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC--CEEE-EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            5667777765321111 6777777655  3333 333322233  89999999999887421      114678999998


Q ss_pred             ccccCCCCCCcceeeeeeecc-------ccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           99 PELYGQLNSPQLERIAALDAH-------VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      .         +.+.+..+...       ......+.++|++++++++... ++.|.+.|+.+.+....+...   +    
T Consensus       157 ~---------t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---g----  220 (426)
T 3c75_H          157 V---------TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---D----  220 (426)
T ss_dssp             T---------TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S----
T ss_pred             C---------CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---C----
Confidence            8         56666665421       1235678999999975555433 689999999975433332211   1    


Q ss_pred             eeeeEECCCC-CcEEEeecCCeEEEEEcccCCcCc----eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          171 LSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       171 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                      .  ....|++ ..+++.+.||.+.+.++.+++...    .+....   ...+.+.+++..+++ ....+.+.+.|+....
T Consensus       221 ~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          221 C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEG  297 (426)
T ss_dssp             E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSC
T ss_pred             c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCc
Confidence            1  1223333 334555667777777774443321    111111   234567888874444 4567899999986422


Q ss_pred             c-ceeEeeC----------CCCceeEEEecCCCCCeEEEee---------CCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          243 A-PIQELPG----------HTHWTWAVCCNPEYDGFILSAG---------TDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       243 ~-~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                      . .+..+..          .......++++|++.+++++..         .++.|.+.|..+                  
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T------------------  359 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET------------------  359 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT------------------
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC------------------
Confidence            1 1111110          0111223789999844444432         135799999998                  


Q ss_pred             ccccceeeccccceEEEEEeCCCCCceEEEee-eCCeEEEeecCccc
Q 018697          303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLS-YDGRVVVESVKPFL  348 (351)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~vw~~~~~~  348 (351)
                       .+.+..+.... ...++.|+|+++.++++.. .++.|.++|+.+..
T Consensus       360 -~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          360 -GERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             -CCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             -CeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence             78888876433 4789999999983444444 69999999998654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=7.6e-11  Score=96.93  Aligned_cols=209  Identities=11%  Similarity=0.030  Sum_probs=144.4

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCC-cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      ..++.|++++...  +++... +..+. ..++++.+.|+++.+++      .++.|..||..          ++.+-.+.
T Consensus        12 ~~~~~v~~~d~~t--G~~~w~-~~~~~~~~~~~~~~~pdG~ilvs------~~~~V~~~d~~----------G~~~W~~~   72 (276)
T 3no2_A           12 SGWNKIAIINKDT--KEIVWE-YPLEKGWECNSVAATKAGEILFS------YSKGAKMITRD----------GRELWNIA   72 (276)
T ss_dssp             TTCSEEEEEETTT--TEEEEE-EECCTTCCCCEEEECTTSCEEEE------CBSEEEEECTT----------SCEEEEEE
T ss_pred             CCCCEEEEEECCC--CeEEEE-eCCCccCCCcCeEECCCCCEEEe------CCCCEEEECCC----------CCEEEEEc
Confidence            3568888776433  444433 33343 57899999999987763      35678888863          45666665


Q ss_pred             cc-ccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCccccccc-ccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          118 AH-VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       118 ~h-~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+ ...+.++.+.++|+. +++.+. ++.|..+|.+ ++......... ...+......+++.++++++++...++.|..
T Consensus        73 ~~~~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           73 APAGCEMQTARILPDGNA-LVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE  150 (276)
T ss_dssp             CCTTCEEEEEEECTTSCE-EEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred             CCCCccccccEECCCCCE-EEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence            54 357889999999993 444454 6677777653 33222221111 0122234566788999999999889999999


Q ss_pred             EEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC------CceeEEEecCCCCCe
Q 018697          195 WDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT------HWTWAVCCNPEYDGF  267 (351)
Q Consensus       195 wd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~  267 (351)
                      ||.+ ++.+..+.... +.++...+++. +++++..++.|..+|..+ ++.+.++..+.      ..+..++..++| .+
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i  226 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLES-NRIVRRVNANDIEGVQLFFVAQLFPLQNG-GL  226 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTT-CCEEEEEEGGGSBSCCCSEEEEEEECTTS-CE
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcC-CcEEEEecCCCCCCccccccccceEcCCC-CE
Confidence            9998 98888887544 77788889997 788888888999999887 66777775332      237888889999 77


Q ss_pred             EEEee
Q 018697          268 ILSAG  272 (351)
Q Consensus       268 l~s~~  272 (351)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=1.1e-12  Score=111.81  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=119.7

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC-----cccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEE
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD  196 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  196 (351)
                      ++..+++++... ++++++.+ .+.+|++......     ..........+.. |+.++|  ++..|+++ .++.|++||
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999988 35555554 6777987642200     0011101112344 999999  88888888 889999999


Q ss_pred             cccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          197 LRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       197 ~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      +++.........-.  +.++.+.+.  + ++++..||.|.+||+.. .....    +...|++++|+|+|   ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG---~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ---LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE---EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc---eEEEEcC
Confidence            98765433332111  667666544  2 77789999999999986 43332    45689999999998   6778899


Q ss_pred             CeEEEEEcCCCCCCCCCCcccccCCccccccc--ceee------c---cccceEEEEEeCCCCCceEEE
Q 018697          275 STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSY------S---DYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       275 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      |.+++|+...                   .+.  ..++      .   +|...|.+|.|.+++. ++++
T Consensus       182 g~i~~~~~~~-------------------~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~  230 (388)
T 1xip_A          182 RSFQSFAWRN-------------------GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV  230 (388)
T ss_dssp             SCEEEEEEET-------------------TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred             CcEEEEcCCC-------------------ccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence            9999998876                   332  2333      2   3678899999999887 4544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.44  E-value=5e-10  Score=95.98  Aligned_cols=231  Identities=11%  Similarity=0.095  Sum_probs=145.6

Q ss_pred             CCCEEEEEEeCCCCC---eEEEEeeecCC-cceeeeee-----------C--CCCCceEEEEeecCCcceEEEEEccccc
Q 018697           40 EENEVHLLRLSSGGT---ELICEGLFSHP-NEIWDLSS-----------C--PFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~---~~~~~~~~~h~-~~v~~i~~-----------~--~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      ....+.++++.+++.   +++......+. ++.+.+.|           +  +++++|++.   +..++.|.++|+....
T Consensus        41 ~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~---~l~s~~I~viD~~t~p  117 (462)
T 2ece_A           41 RADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP---GLRSSRIYIIDTKPNP  117 (462)
T ss_dssp             CCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE---BTTTCCEEEEECCSCT
T ss_pred             CCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc---cCCCCeEEEEECCCCC
Confidence            456788888886432   33333332332 24444444           6  788888887   5778899999986321


Q ss_pred             CCCCCCcceeeeeee------c-cccceeEEEecCCCCCcEEEEecC------CcEEEEEcCCCCCCcccccccccCccc
Q 018697          103 GQLNSPQLERIAALD------A-HVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      .     ..+...+++      . .......+...|+|  +++++..+      +.|.++|..+.+.........  +...
T Consensus       118 ~-----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~--~~~~  188 (462)
T 2ece_A          118 R-----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR--GDQY  188 (462)
T ss_dssp             T-----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC--TTCC
T ss_pred             C-----CceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC--CCcc
Confidence            1     234445552      1 11244567788998  46666433      789999998765444433221  1112


Q ss_pred             ceeeeEECCCCCcEEEee-------------------cCCeEEEEEcccCCcCceeecc---e-eEEE--EcCCCCCcEE
Q 018697          170 YLSGGAWDPHDVNAVAAT-------------------CESSVQFWDLRSMGKTNSIEHA---H-VRNV--DYDTKKKHLL  224 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~---~-v~~~--~~~~~~~~~l  224 (351)
                      .-+.+.|+|+++.++++.                   ....|.+||+.+++.+.++..+   . ...+  +|+|++++.+
T Consensus       189 ~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          189 LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred             ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence            355688899999888774                   3689999999988777777754   2 5555  4599999656


Q ss_pred             EEec-----CCCeEEEEecccCCc--ceeEe--eCC----------------CCceeEEEecCCCCCeEEEe-eCCCeEE
Q 018697          225 VTAA-----DESGIHLWDLRMLKA--PIQEL--PGH----------------THWTWAVCCNPEYDGFILSA-GTDSTVN  278 (351)
Q Consensus       225 ~~~~-----~dg~i~i~d~~~~~~--~~~~~--~~~----------------~~~v~~~~~~~~~~~~l~s~-~~dg~i~  278 (351)
                      +++.     .+++|.+|.... +.  ..+.+  ...                ......|.++|+| ++|+.+ -..+.|.
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~Va  346 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVR  346 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEE
T ss_pred             EEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEE
Confidence            6555     677888776553 21  01111  100                2346789999999 655554 4578999


Q ss_pred             EEEcCC
Q 018697          279 LWLVST  284 (351)
Q Consensus       279 iwd~~~  284 (351)
                      +||+..
T Consensus       347 vfdV~d  352 (462)
T 2ece_A          347 QYDISN  352 (462)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            999964

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=1.1e-11  Score=105.67  Aligned_cols=180  Identities=13%  Similarity=0.098  Sum_probs=123.1

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC--CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL--NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      .+..+++++....++++    +.+ .+.+|++.......  .....++.... .+.. |+.++|  ++.. ++++ .++.
T Consensus        39 ~~nlLais~~~gll~a~----~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~-L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQ-VLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTE-EEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEe----CCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCE-EEEE-cCCc
Confidence            68999999999888875    445 66779987432000  00002222223 4566 999999  7773 4444 7899


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEE
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLL  224 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l  224 (351)
                      |++||+.+.......     ..+...+.++.+.+.  .+++++.||.|.+||+.++.... +. ..|.+++|+|+|   +
T Consensus       108 l~v~dv~sl~~~~~~-----~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~-~~Vs~v~WSpkG---~  175 (388)
T 1xip_A          108 LYSLDLEELSEFRTV-----TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA-QNVTSFDVTNSQ---L  175 (388)
T ss_dssp             EEEEESSSTTCEEEE-----EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE-ESEEEEEECSSE---E
T ss_pred             EEEEEchhhhccCcc-----ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc-CCceEEEEcCCc---e
Confidence            999999864422211     122335777777653  38888999999999999776532 11 129999999999   4


Q ss_pred             EEecCCCeEEEEecccCCcc--eeEe------e---CCCCceeEEEecCCCCCeEEEe
Q 018697          225 VTAADESGIHLWDLRMLKAP--IQEL------P---GHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      +.|..||++++|+... ...  ..++      .   +|...|.+|.|.+++ .++++-
T Consensus       176 ~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y  231 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVF  231 (388)
T ss_dssp             EEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             EEEEcCCcEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEE
Confidence            5688999999998875 332  3445      2   478899999999988 777763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.40  E-value=3.7e-11  Score=102.21  Aligned_cols=222  Identities=9%  Similarity=-0.121  Sum_probs=136.7

Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe---------cCCcEEEEEcCCCCCCcccccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---------DEENIFLWSLDCSNKNAQVQSK  162 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---------~d~~v~iwd~~~~~~~~~~~~~  162 (351)
                      .|.+.|..         +.+.+.++.....+  .+.++|+++.++++..         .++.|.+||+.+.+....+...
T Consensus        47 ~vsvID~~---------t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAG---------CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEEEETT---------TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eEEEEECC---------CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            78899988         77888888766666  7999999998666653         3688999999987655554322


Q ss_pred             cccC--cccceeeeEECCCCCcEEEeec--CCeEEE--EEcccCCcCceeecce---------eEEEEcCCCCCc-----
Q 018697          163 QSSG--MLHYLSGGAWDPHDVNAVAATC--ESSVQF--WDLRSMGKTNSIEHAH---------VRNVDYDTKKKH-----  222 (351)
Q Consensus       163 ~~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~---------v~~~~~~~~~~~-----  222 (351)
                      ....  .......++++||+++++++..  +..+.+  +|+.+   +..+..+.         -.-++++++++.     
T Consensus       116 ~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             TSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             CccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEEC
Confidence            0000  0124668899999999998864  467888  99866   22221100         011222233221     


Q ss_pred             -------------------------------EEEEecCCCeEEEEecccCC-cceeEeeC-------CC---CceeEEEe
Q 018697          223 -------------------------------LLVTAADESGIHLWDLRMLK-APIQELPG-------HT---HWTWAVCC  260 (351)
Q Consensus       223 -------------------------------~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-------~~---~~v~~~~~  260 (351)
                                                     .++..+. +.+.+.|+.... ..+..+..       +.   .....+++
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             ccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence                                           1111222 556666654311 11111110       00   11122689


Q ss_pred             cCCCCCeEEEee---C-----CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018697          261 NPEYDGFILSAG---T-----DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       261 ~~~~~~~l~s~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      +|++.+++++..   .     ++.+.++|+.+                   .+.+..+.... ...+++|+|+|+.++++
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-------------------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASV-------------------GQTSGPISNGH-DSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-------------------CCEEECCEEEE-EECEEEECCSSSCEEEE
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCC-------------------CeEEEEEECCC-CcceEEECCCCCEEEEE
Confidence            999944444333   2     23566999998                   77777776544 58899999999867777


Q ss_pred             ee-eCCeEEEeecCccc
Q 018697          333 LS-YDGRVVVESVKPFL  348 (351)
Q Consensus       333 ~~-~dg~v~vw~~~~~~  348 (351)
                      .. .++.|.++|+.+..
T Consensus       332 ~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          332 NSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EETTTTEEEEEESSSCE
T ss_pred             ccCCCCeEEEEECCCCc
Confidence            77 69999999998643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=6.7e-11  Score=100.67  Aligned_cols=240  Identities=7%  Similarity=-0.051  Sum_probs=145.2

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee----eeeeccccceeEEEecCCCCCcEEEEec
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI----AALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ..+..++++|+++.+++..  ...++.++||.+..       ....+.    .....|-..+.++++.++++ ++++...
T Consensus        17 ~~p~~va~~~~g~~~v~~~--~~~~~~~~l~~~~~-------g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g   86 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLH--QFYQPEMQVAELTQ-------DGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNG   86 (343)
T ss_dssp             SCEEEEEECTTSCEEEEEC--GGGCCSCSEEEEET-------TEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECH
T ss_pred             CCcceEEECCCCCEEEEeC--CCCCCceEEEEECC-------CCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCC
Confidence            6788999999997766641  11223367777651       011100    11223556899999999987 3444433


Q ss_pred             -----CCcEEEEEcCCCCCCcccccc-cccCcccceeeeEECCCCCcEEEe-e---cCCeEEEEEcccCCcCceeec---
Q 018697          142 -----EENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAA-T---CESSVQFWDLRSMGKTNSIEH---  208 (351)
Q Consensus       142 -----d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~iwd~~~~~~~~~~~~---  208 (351)
                           +..|.+||+.++.....+... ....+...+..+++++++..++++ .   .++.|.+||+.+++....+..   
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence                 578999999865433222111 111122356889999866555544 3   578999999886643222110   


Q ss_pred             ---------------------------ce-eEEEEcCCCCCcEEEEecCC-CeEEEEecccCC--c-----cee--EeeC
Q 018697          209 ---------------------------AH-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLK--A-----PIQ--ELPG  250 (351)
Q Consensus       209 ---------------------------~~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~--~-----~~~--~~~~  250 (351)
                                                 .. +..++|+|+++ .|+.+..+ ..+..++.....  .     ...  ...+
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g  245 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS  245 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence                                       01 57899999998 45555444 466666643110  0     000  1123


Q ss_pred             CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec-cccceEEEEEeCCCCCce
Q 018697          251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       251 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  329 (351)
                      +......++++++| .++++...++.|.+||...                   ++...... .+...+.+++|.+++. +
T Consensus       246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~-------------------G~~~~~~~~~~~~~p~~va~~~~g~-l  304 (343)
T 2qe8_A          246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD-------------------RAYKLLVTDEKLSWTDSFNFGSDGY-L  304 (343)
T ss_dssp             ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT-------------------TEEEEEEECGGGSCEEEEEECTTSC-E
T ss_pred             cCCCCceEEECCCC-CEEEEccCCCeEEEEECCC-------------------CCEEEEEECCceecCCeeEECCCCc-E
Confidence            34456789999999 8999998899999999844                   33222221 1234588999999987 6


Q ss_pred             EEEeeeCC
Q 018697          330 FASLSYDG  337 (351)
Q Consensus       330 l~s~~~dg  337 (351)
                      +++.+..+
T Consensus       305 ~v~~~~~~  312 (343)
T 2qe8_A          305 YFDCNQLH  312 (343)
T ss_dssp             EEEECCGG
T ss_pred             EEEeCccc
Confidence            66665433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=2.1e-10  Score=95.51  Aligned_cols=203  Identities=10%  Similarity=0.037  Sum_probs=128.7

Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR  198 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  198 (351)
                      +..-..+..|++++..++++...++.|..||..++..  ....     ....+.+++++++++ ++++. ++.|.+||..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-----~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRVT-----MDAPVSSVALRQSGG-YVATI-GTKFCALNWK   81 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEE-----CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEEe-----CCCceEEEEECCCCC-EEEEE-CCeEEEEECC
Confidence            3344567889997776555556789999999986432  1111     123688999999998 44444 6789999998


Q ss_pred             cCCcCceeec-----ce-eEEEEcCCCCCcEEEEecC---------CCeEEEEecccCCcceeEeeCCCCceeEEEecCC
Q 018697          199 SMGKTNSIEH-----AH-VRNVDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE  263 (351)
Q Consensus       199 ~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  263 (351)
                      +++.......     .. ++.++++|+|+ ++++...         ...-.+|.+...++ +..+..+....+.++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCC
Confidence            7654322211     12 88999999998 5554321         12334554443232 3333333455689999999


Q ss_pred             CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       264 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      +..++++.+.++.|.+||+.......            ...+.+..+..+...+.+++++++|. ++++...++.|.+|+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~------------~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQI------------SNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLD  226 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCE------------EEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEEC
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcc------------cCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEc
Confidence            93355666778899999984200000            00122233333445678999999997 777777788899999


Q ss_pred             cC
Q 018697          344 VK  345 (351)
Q Consensus       344 ~~  345 (351)
                      .+
T Consensus       227 ~~  228 (297)
T 3g4e_A          227 PV  228 (297)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=9e-11  Score=109.44  Aligned_cols=198  Identities=14%  Similarity=0.131  Sum_probs=130.3

Q ss_pred             cccceeEEEecCCCCCcEEEEecC----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC----
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES----  190 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----  190 (351)
                      |...+..++|||||+.++++.+..    ..|++||+.+++.......    +  .....++|+ |++.|+.++.+.    
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~----~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK----D--VKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE----E--EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC----C--ceeccEEEe-CCCEEEEEEecCcccc
Confidence            555788899999999644444332    5799999997653222111    0  024678999 999999887663    


Q ss_pred             ---------eEEEEEcccCCcC--ceee-cc-e---eEEEEcCCCCCcEEEEecC---CCeEEEEecccCCcceeEeeCC
Q 018697          191 ---------SVQFWDLRSMGKT--NSIE-HA-H---VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELPGH  251 (351)
Q Consensus       191 ---------~i~iwd~~~~~~~--~~~~-~~-~---v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~  251 (351)
                               .|++|++.++...  ..+. .. +   ...+.|+|+|++++++...   +..|+++|+.........+..+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     4999998876532  1121 12 2   6789999999966565543   3589999998644356667766


Q ss_pred             CCceeEEEecCCCCCeEEEeeCC---CeEEEEEcCCCCCCCCCCcccccCCccccccc--ceeeccccceEEEEEeCCCC
Q 018697          252 THWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWSSRE  326 (351)
Q Consensus       252 ~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~  326 (351)
                      ....... ++++|..+++....+   +.|..+|+..                   +..  ...+..|...+.  .|++++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-------------------~~~~~~~~l~~~~~~~~--~~s~~g  337 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-------------------PGPAHWRDLIPERQQVL--TVHSGS  337 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-------------------CCGGGCEEEECCCSSCE--EEEEET
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-------------------CCccccEEEecCCCCEE--EEEEEC
Confidence            6666555 667764555555544   5788899876                   222  334555555554  888988


Q ss_pred             CceEEEeeeCC--eEEEeecC
Q 018697          327 PWIFASLSYDG--RVVVESVK  345 (351)
Q Consensus       327 ~~~l~s~~~dg--~v~vw~~~  345 (351)
                      ..++++...++  .|++|++.
T Consensus       338 ~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          338 GYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             TEEEEEEEETTEEEEEEECTT
T ss_pred             CEEEEEEEECCeeEEEEEECC
Confidence            85555555665  57888875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.36  E-value=3e-09  Score=91.28  Aligned_cols=242  Identities=8%  Similarity=0.016  Sum_probs=149.6

Q ss_pred             eecCCCCcceEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeee-c------CCcceeeeeeCCCCCceEEEEeec
Q 018697           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLF-S------HPNEIWDLSSCPFDQRIFSTVFST   87 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~-~------h~~~v~~i~~~~~~~~l~~~~~~~   87 (351)
                      .+.++|++.++++.....      ..++.+.+++.....  .. ..+. +      +......++|+|++++|+++.  .
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~-~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n--~  144 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PI-ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ--F  144 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EE-EEEECCCccccccCCCccceEECCCCCEEEEEe--c
Confidence            566778888888875321      124677777765422  11 1111 1      112345899999999999873  1


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeee-eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc-cccc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSS  165 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~  165 (351)
                      ..++.|.++| .         +.+.+.. +...    .++.+.|++...+++.+.||.+.++|. ++........ ....
T Consensus       145 ~~~~~v~viD-~---------t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~  209 (373)
T 2mad_H          145 AAGPAVGLVV-Q---------GGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT  209 (373)
T ss_pred             CCCCeEEEEE-C---------CCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence            1257899999 7         5566555 4321    135566777665666678999999999 5543311110 0001


Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc--Cceeec-----------ce-eEEEEcCCCCCcEEEEec---
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEH-----------AH-VRNVDYDTKKKHLLVTAA---  228 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~-----------~~-v~~~~~~~~~~~~l~~~~---  228 (351)
                      +.........+.+++..++..+..+.+.+.|+.....  ...+..           +. ...++++|+++.++++..   
T Consensus       210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence            1111122345666666666656788999999875431  112210           11 445789999885444433   


Q ss_pred             ------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          229 ------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       229 ------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                            .++.|.++|..+ .+.+.++.. ......+.|+|+|+.+++++. .++.|.++|..+
T Consensus       290 ~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             cccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                  135899999987 666777753 346799999999932777776 589999999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=3.1e-09  Score=92.47  Aligned_cols=192  Identities=10%  Similarity=-0.005  Sum_probs=128.8

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC--eEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES--SVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~  198 (351)
                      .....|+|++++. ++++...++.|++||+.++.. ..+....     .... ++|+|+++.|+++..++  .|.++|..
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~-~~~~~~~-----~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKV-TTVHPGF-----KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEE-EEEEETC-----CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEE-EEeeccC-----CCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            3578899999988 455556678999999985322 2222111     1233 89999999888887655  89999987


Q ss_pred             cCCcCcee----e-cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-----eCCCCce--eEEEecCCCC
Q 018697          199 SMGKTNSI----E-HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-----PGHTHWT--WAVCCNPEYD  265 (351)
Q Consensus       199 ~~~~~~~~----~-~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v--~~~~~~~~~~  265 (351)
                      .+.....+    . ... +.+++++|++..+++ +..++.|+.||... .. ...+     .++...-  ..++|+|++.
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~-~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKT-QE-VTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTT-CC-EEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCC-CC-EEEEecccccCCCCCCccccEEEeCCCC
Confidence            66543333    1 122 889999995443444 66788999999875 32 2222     1222222  3999999643


Q ss_pred             CeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc---------------cceEEEEEeCCCCCceE
Q 018697          266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY---------------EDSVYGLAWSSREPWIF  330 (351)
Q Consensus       266 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l  330 (351)
                      .++++-..++.|+.|+....                     +..+.++               -....+++++|+|. ++
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~---------------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-ly  337 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGE---------------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FY  337 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCC---------------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EE
T ss_pred             EEEEEeCCCCEEEEEecCCC---------------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EE
Confidence            77777778889999987641                     1111111               13478999999998 88


Q ss_pred             EEee-eCCeEEEeecC
Q 018697          331 ASLS-YDGRVVVESVK  345 (351)
Q Consensus       331 ~s~~-~dg~v~vw~~~  345 (351)
                      ++-. .++.|+.|+++
T Consensus       338 vad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EEETTTTCEEEEEETT
T ss_pred             EEeCCCCCEEEEEECC
Confidence            8887 88999999954

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=3.9e-10  Score=94.47  Aligned_cols=205  Identities=8%  Similarity=0.058  Sum_probs=129.2

Q ss_pred             ccccceeEEEecCCCCCcEEE-------EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCC-CCcEEEeecC
Q 018697          118 AHVGKINCVLWWSSGRHDKLV-------SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DVNAVAATCE  189 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~-------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  189 (351)
                      ..-....+++|++++. ++++       ...++.|.+||..++... ........++...+.+++++++ ++ +++++..
T Consensus        15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~   91 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADMR   91 (314)
T ss_dssp             CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEETT
T ss_pred             ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEECC
Confidence            3344567899999887 3555       356789999998754322 1111111123346889999998 55 5555545


Q ss_pred             CeEEEEEcccCCcCce-ee--c---ce-eEEEEcCCCCCcEEEEecCC---------------CeEEEEecccCCcceeE
Q 018697          190 SSVQFWDLRSMGKTNS-IE--H---AH-VRNVDYDTKKKHLLVTAADE---------------SGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~-~~--~---~~-v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~  247 (351)
                      +.|.+||.. ++.... ..  .   .. +.++++++++. ++++...+               +.|..||..  ++ +..
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~  166 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQ  166 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CC-EEE
Confidence            589999988 554322 11  0   12 88999999997 66655544               567777754  33 233


Q ss_pred             eeCCCCceeEEEec----CCCCCeE-EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEE
Q 018697          248 LPGHTHWTWAVCCN----PEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLA  321 (351)
Q Consensus       248 ~~~~~~~v~~~~~~----~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  321 (351)
                      +..+......++|+    |++ ..+ ++...++.|.+||.......             ........+..+. ..+..++
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKI-------------ENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEE-------------EEEEEEEECCCCSSCEEEEEE
T ss_pred             eccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcc-------------ccceEEEECCCCCCCCCCceE
Confidence            33333456889999    998 554 55566889999997620000             0011223333343 5678899


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecC
Q 018697          322 WSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++++|. ++++...++.|.+|+.+
T Consensus       233 ~d~~G~-l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          233 FDEDNN-LLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EBTTCC-EEEEEETTTEEEEECTT
T ss_pred             ECCCCC-EEEEEcCCCEEEEEcCC
Confidence            999998 77777778899999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=2.6e-09  Score=90.83  Aligned_cols=264  Identities=9%  Similarity=0.050  Sum_probs=159.2

Q ss_pred             ecCCCCcceEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeeecC------CcceeeeeeCCCCCceEEEEeecCC
Q 018697           22 VKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSH------PNEIWDLSSCPFDQRIFSTVFSTGE   89 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~~~~~~~~~   89 (351)
                      +..+|++..++++....      ..++.+.+|+....  ........+.      ......++|+|++++++++.  ...
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan--~~~  158 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ--FSP  158 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE--CSS
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEE--cCC
Confidence            66788888888865321      12355666665543  2222211111      12466899999999988863  123


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      ++.|.++|+.         +.+.+.++....    |....|.+...+++.+.||.+.+.++.+..............-..
T Consensus       159 ~~~VsVID~~---------t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~  225 (386)
T 3sjl_D          159 APAVGVVDLE---------GKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  225 (386)
T ss_dssp             SCEEEEEETT---------TTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             CCeEEEEECC---------CCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence            6799999998         677777774322    122335555445566788999888887533321111101000011


Q ss_pred             ce-eeeEEC-CCCCcEEEeecCCeEEEEEcccCC--cCceee--------cc----eeEEEEcCCCCCcEEEEecC----
Q 018697          170 YL-SGGAWD-PHDVNAVAATCESSVQFWDLRSMG--KTNSIE--------HA----HVRNVDYDTKKKHLLVTAAD----  229 (351)
Q Consensus       170 ~v-~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~--------~~----~v~~~~~~~~~~~~l~~~~~----  229 (351)
                      ++ ....|. ++++.++ .+.+|.|++.|+.+..  ....+.        .+    ....++++|++..++++-..    
T Consensus       226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            22 224564 5665444 6668999999997654  222221        01    14557778998855554321    


Q ss_pred             -----CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE-eeCCCeEEEEEcCCCCCCCCCCcccccCCcccc
Q 018697          230 -----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDELPSESLVESPNQRA  303 (351)
Q Consensus       230 -----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                           ...|.++|+.+ .+.+..+.. ...+..+++++++..+|++ ...++.|.++|..+                   
T Consensus       305 ~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-------------------  363 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-------------------  363 (386)
T ss_dssp             CTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTT-------------------
T ss_pred             ccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-------------------
Confidence                 25799999998 666777653 3478899999999435555 45689999999998                   


Q ss_pred             cccceeeccccceEEEEEeCCC
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                      ++.+.++..-.. .+.+.+++|
T Consensus       364 ~k~~~~i~~~~~-p~~l~~s~d  384 (386)
T 3sjl_D          364 GEELRSVNQLGH-GPQVITTAD  384 (386)
T ss_dssp             CCEEEEECCCCS-SCCEEEECC
T ss_pred             CcEEEEecCCCC-CceeEECCc
Confidence            788777754322 344555554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.28  E-value=2.2e-10  Score=101.59  Aligned_cols=239  Identities=14%  Similarity=0.042  Sum_probs=154.9

Q ss_pred             ceeeeeeCC-----CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEe-c-CCCCCcEEE
Q 018697           67 EIWDLSSCP-----FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLW-W-SSGRHDKLV  138 (351)
Q Consensus        67 ~v~~i~~~~-----~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-~-~~~~~~~~~  138 (351)
                      .......|.     ||++++..   ...+..|.+.|+.         ..+....+... ...+..+++ . |++.+++++
T Consensus        86 d~hh~~~s~t~g~~DG~~lfVn---d~~~~rVavIdl~---------t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~  153 (595)
T 1fwx_A           86 DLHHVHMSFTEGKYDGRFLFMN---DKANTRVARVRCD---------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCN  153 (595)
T ss_dssp             CBCCEEEEEETTEEEEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred             CCCccccCCCCCCcCCCEEEEE---cCCCCEEEEEECC---------CceEeeEEeCCCCCCCcceeeeecCCCcEEEEe
Confidence            334455555     88888886   3667789999998         66766644322 345778887 4 899874444


Q ss_pred             E-----------------ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC-----------
Q 018697          139 S-----------------IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----------  190 (351)
Q Consensus       139 ~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------  190 (351)
                      +                 -.++.+.+.|..+.+...++....      ....++++|+++++++++.+.           
T Consensus       154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~  227 (595)
T 1fwx_A          154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA  227 (595)
T ss_dssp             ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred             cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccc
Confidence            3                 224678899988643333332211      345678899999888887432           


Q ss_pred             ---------------------------eEEEEEccc--CCc-Cceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecc
Q 018697          191 ---------------------------SVQFWDLRS--MGK-TNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLR  239 (351)
Q Consensus       191 ---------------------------~i~iwd~~~--~~~-~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  239 (351)
                                                 .|.+.|.++  ++. +..+..+. ..++.++|||+++++++..+.+|.++|+.
T Consensus       228 ~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          228 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             cccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence                                       467788877  444 44555444 88999999999888888889999999998


Q ss_pred             cCC-----------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          240 MLK-----------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       240 ~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                      +..           ..+.+.. -......++|+|+| ....+.-.|++|.+||+.......      .+   ....+.+.
T Consensus       308 ~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~------~g---~~~~~vi~  376 (595)
T 1fwx_A          308 RFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAY------AG---EKVDPIKD  376 (595)
T ss_dssp             GHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHH------HT---CSCCCEEE
T ss_pred             ccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhh------cc---cccceeEE
Confidence            531           1222332 23557889999999 878888889999999987510000      00   00023444


Q ss_pred             eeccccce-----EEEEEeCCCCCceEEEee
Q 018697          309 SYSDYEDS-----VYGLAWSSREPWIFASLS  334 (351)
Q Consensus       309 ~~~~~~~~-----v~~~~~~~~~~~~l~s~~  334 (351)
                      .+..|-.+     -.++..+|||++++++..
T Consensus       377 kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          377 KLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EeecccccccceeccceEeCCCCCEEEEcCC
Confidence            55444332     234567899996555554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.28  E-value=1.3e-08  Score=83.24  Aligned_cols=245  Identities=12%  Similarity=0.077  Sum_probs=151.2

Q ss_pred             CEEEEEEeCCCCCeE-E-EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           42 NEVHLLRLSSGGTEL-I-CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~-~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      +.|+.+++....... . ...+......+..++|.+++..|+.+   ....+.|.+++...         ......+...
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~---d~~~~~I~~~~~~g---------~~~~~~~~~~   77 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT---DISEPSIGRASLHG---------GEPTTIIRQD   77 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE---ETTTTEEEEEESSS---------CCCEEEECTT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE---ECCCCEEEEEecCC---------CCcEEEEECC
Confidence            466667766533210 0 01111123467899999988888776   35677899998762         1222222222


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---CCeEEEEE
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWD  196 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd  196 (351)
                      ......+++.+++..++++....+.|.+++++... ...+.. .  + ......++++|++..|+.+..   .+.|..++
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~-~--~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFD-T--G-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-S--S-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEE-C--C-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            24678999999877555555667899999987422 111111 1  1 125688999997777766653   36888888


Q ss_pred             cccCCcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018697          197 LRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       197 ~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      +... ....+...  . ...++++|++..++++-...+.|.++|+.. ......+.. ......++.. .+ .++++...
T Consensus       153 ~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d-~~-~lyva~~~  227 (267)
T 1npe_A          153 MDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY-GK-NLYYTDWK  227 (267)
T ss_dssp             TTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE-TT-EEEEEETT
T ss_pred             cCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe-CC-EEEEEECC
Confidence            7643 22333211  2 889999998776777777788999999874 322222332 2334566654 33 56666666


Q ss_pred             CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCC
Q 018697          274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREP  327 (351)
Q Consensus       274 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  327 (351)
                      .+.|..+|...                   ++.+..+.... ....++++.|++.
T Consensus       228 ~~~v~~~d~~~-------------------g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          228 TNSVIAMDLAI-------------------SKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTT-------------------TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCeEEEEeCCC-------------------CCceEEEccccccccceeeecCccC
Confidence            78999999987                   67776665432 2367788887753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=1.2e-09  Score=92.31  Aligned_cols=193  Identities=10%  Similarity=0.010  Sum_probs=122.2

Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK  202 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  202 (351)
                      ..+..|+|++..++++...++.|..||..++.. .. ..  .   ...+.+++|+|+++.+++ + +..|.+||..+++.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~-~~--~---~~~v~~i~~~~dg~l~v~-~-~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TV-HA--L---PFMGSALAKISDSKQLIA-S-DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EE-EE--C---SSCEEEEEEEETTEEEEE-E-TTEEEEEETTTCCE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EE-EE--C---CCcceEEEEeCCCeEEEE-E-CCCEEEEECCCCcE
Confidence            456789998776556666678999999885422 11 11  1   126889999999886655 3 34599999887764


Q ss_pred             Cceeec-----ce-eEEEEcCCCCCcEEEEecC------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE-E
Q 018697          203 TNSIEH-----AH-VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI-L  269 (351)
Q Consensus       203 ~~~~~~-----~~-v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~  269 (351)
                      ......     .. +..++++|+|+ ++++...      .+.|..++  . ++ +..+..+......++|+|++ ..+ +
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~-~~~~~~~~~~~~~i~~s~dg-~~lyv  195 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GK-VTKLFADISIPNSICFSPDG-TTGYF  195 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TE-EEEEEEEESSEEEEEECTTS-CEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-Cc-EEEeeCCCcccCCeEEcCCC-CEEEE
Confidence            322111     12 88999999998 5554332      24555555  2 43 33333333456889999999 554 5


Q ss_pred             EeeCCCeEEEEEcC--CC-CCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          270 SAGTDSTVNLWLVS--TS-NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       270 s~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +.+.++.|.+||+.  .+ ...              ....+..+......+.+++++++|. ++++...++.|.+|+..
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~--------------~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTG--------------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSS--------------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT
T ss_pred             EECCCCEEEEEEcccccCCccc--------------CceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCC
Confidence            55667899999986  31 000              0011222222334567899999997 67766667889999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=7.9e-09  Score=89.41  Aligned_cols=244  Identities=10%  Similarity=0.069  Sum_probs=152.0

Q ss_pred             eecCCCCcceEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeeec------CCcceeeeeeCCCCCceEEEEeecC
Q 018697           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFS------HPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .+..++++.+++++....      ..++.|.+++....  ........+      .......++|+|++++++++.  ..
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n--~~  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ--FS  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEE--CS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEe--cC
Confidence            567888888888875321      12456666655443  232211111      123456899999999998863  12


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc-ccccCc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSSGM  167 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~  167 (351)
                      .++.|.+.|+.         +.+.+.++....    +....|++...+++.+.||.+.+.++.++. ...... ....+.
T Consensus       198 ~~~~VsVID~~---------t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~-v~~~~~~~~~v~~  263 (426)
T 3c75_H          198 PAPAVGVVDLE---------GKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGE-TKVTNTEVFHTED  263 (426)
T ss_dssp             SSCEEEEEETT---------TTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTC-CEEEECCCCSCTT
T ss_pred             CCCeEEEEECC---------CCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCc-EEEEeeeeeccCC
Confidence            35789999998         667776665422    134456665545555778888888884332 221100 000000


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc--Cceee--------cce----eEEEEcCCCCCcEEEEec-----
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIE--------HAH----VRNVDYDTKKKHLLVTAA-----  228 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--------~~~----v~~~~~~~~~~~~l~~~~-----  228 (351)
                      ......+.+.+++..++.....+.+.+.|+.....  ...+.        .+.    ...++++|+++.++++..     
T Consensus       264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g  343 (426)
T 3c75_H          264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW  343 (426)
T ss_dssp             SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred             CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence            11123456788988888888889999999865431  11111        011    234789999885555432     


Q ss_pred             ----CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          229 ----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       229 ----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                          .++.|.++|..+ .+.+.++.. ......+.|+|+++.++++.. .++.|.++|+.+
T Consensus       344 thk~~s~~VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          344 KHKAASRFVVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             CTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             cccCCCCEEEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence                135799999998 566777763 235789999999932777776 599999999998

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=2.5e-09  Score=90.99  Aligned_cols=242  Identities=9%  Similarity=-0.035  Sum_probs=145.7

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      .+.+++...  .+..-..-.+. .+  .+.++|+++.++++...      |..++.|.+||..         +.+.+.++
T Consensus        47 ~vsvID~~t--~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~---------T~~vv~~I  112 (368)
T 1mda_H           47 ENWVSCAGC--GVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---------TFLPIADI  112 (368)
T ss_dssp             EEEEEETTT--TEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---------TCCEEEEE
T ss_pred             eEEEEECCC--CeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC---------CCCEEEEE
Confidence            666666443  44443322333 34  79999999999887311      1246889999998         67777777


Q ss_pred             ecc-------ccceeEEEecCCCCCcEEEEec-CCcEEE--EEcCCCCCCccccccc----ccCc---------ccceee
Q 018697          117 DAH-------VGKINCVLWWSSGRHDKLVSID-EENIFL--WSLDCSNKNAQVQSKQ----SSGM---------LHYLSG  173 (351)
Q Consensus       117 ~~h-------~~~v~~~~~~~~~~~~~~~~~~-d~~v~i--wd~~~~~~~~~~~~~~----~~~~---------~~~v~~  173 (351)
                      ...       ......++++|||++++++... +..|.+  +|+.+   ...+....    ....         ...+..
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence            543       1245689999999985555433 467888  88854   11110000    0000         000000


Q ss_pred             eE--------------------------ECCCCCcEEEeecCCeEEEEEcccCC--cCceeec--------ce----eEE
Q 018697          174 GA--------------------------WDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEH--------AH----VRN  213 (351)
Q Consensus       174 ~~--------------------------~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~--------~~----v~~  213 (351)
                      +.                          ..+++..++..+. +.+.+.|+.+..  ....+..        +.    ...
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence            00                          0333444444445 778888876432  1111110        00    223


Q ss_pred             EEcCCCCCcEEEEec---C-----CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCC
Q 018697          214 VDYDTKKKHLLVTAA---D-----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST  284 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  284 (351)
                      ++++|+++.++++..   .     ++.+.++|+.+ .+.+..+... .....++|+|+|..++++.. .++.|.++|+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            789999985555433   2     23566999998 5566666533 36789999999955677777 699999999999


Q ss_pred             CCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                                         .+.+.++..... .+.+++.+
T Consensus       347 -------------------~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          347 -------------------DQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             -------------------CEEEEECCCCSC-CCEEECCC
T ss_pred             -------------------CcEEEEEECCCC-CCEEEeec
Confidence                               888888875544 46676654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=1.2e-09  Score=92.92  Aligned_cols=208  Identities=11%  Similarity=0.038  Sum_probs=127.3

Q ss_pred             cceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCccccc--ccccCcccceeeeEECCCCCcEEEeec-----CCe
Q 018697          121 GKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQS--KQSSGMLHYLSGGAWDPHDVNAVAATC-----ESS  191 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~  191 (351)
                      ..+..++++++|+ ++++..  .++.++||.+.++ ....+..  ....++...+.+++++++++.+++-..     +..
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            6789999999998 344432  2343556665422 2111100  111234557899999999875555433     579


Q ss_pred             EEEEEcccCCcCceeecc-------e-eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCcceeEeeCCC--------
Q 018697          192 VQFWDLRSMGKTNSIEHA-------H-VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHT--------  252 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~--------  252 (351)
                      |.+||+.+++.+..+...       . +..++++|++..++++..   .++.|.+||+.+ ++..+.+..|.        
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSCCSCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccccccc
Confidence            999999988765555421       1 689999987654666655   678999999875 43333332211        


Q ss_pred             ---------------------CceeEEEecCCCCCeEEEeeCCC-eEEEEEcCCCCCCCCCCcccccCCcccccccce--
Q 018697          253 ---------------------HWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHDELPSESLVESPNQRANSLLN--  308 (351)
Q Consensus       253 ---------------------~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--  308 (351)
                                           ..+..|+|+|++ ..|+.+..++ .+..++.........        .   ..+...  
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~--------~---~~~~~~~~  241 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQL--------T---DAELGSKI  241 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTC--------C---HHHHHTTC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCC--------C---hhhhhcce
Confidence                                 235889999999 7777776655 444444321000000        0   011111  


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ...++......++++++|. ++++...++.|.+|+.
T Consensus       242 ~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEET
T ss_pred             EecccCCCCceEEECCCCC-EEEEccCCCeEEEEEC
Confidence            1112333467899999987 8888888999999997

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=2.7e-09  Score=85.98  Aligned_cols=206  Identities=11%  Similarity=0.008  Sum_probs=139.0

Q ss_pred             ceeeeeeecccc--ceeEEEecCCCCCcEEEEec--CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE
Q 018697          110 LERIAALDAHVG--KINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (351)
Q Consensus       110 ~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (351)
                      .+.+.++ .|..  ....+.|++++. ++++++.  ++.|.++|+.+++....+....    ......+++.  ++.|+.
T Consensus         9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~--g~~lyv   80 (266)
T 2iwa_A            9 VEVLNEF-PHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDD----SYFGEGLTLL--NEKLYQ   80 (266)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCT----TCCEEEEEEE--TTEEEE
T ss_pred             ceEEEEE-ECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCC----CcceEEEEEe--CCEEEE
Confidence            3455555 4543  357999999864 4444443  6899999999866544432211    1122345554  456665


Q ss_pred             ee-cCCeEEEEEcccCCcCceeecc-eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--CC---ceeEE
Q 018697          186 AT-CESSVQFWDLRSMGKTNSIEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--TH---WTWAV  258 (351)
Q Consensus       186 ~~-~d~~i~iwd~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~---~v~~~  258 (351)
                      +. .++.+.++|..+.+.+.++..+ . ....++++++.+++ +..++.|.++|..+ .+.+..+..-  ..   .++.+
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~v-s~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQMK-DGWGLATDGKILYG-SDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNEL  157 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECCSS-SCCEEEECSSSEEE-ECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEE
T ss_pred             EEecCCEEEEEECCCCcEEEEEECCCC-CeEEEEECCCEEEE-ECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeE
Confidence            54 6899999999998888887644 2 11224457774555 45688999999987 4456665521  12   36788


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-------------cceEEEEEeCCC
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------------EDSVYGLAWSSR  325 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~  325 (351)
                      .|. ++ .+++....++.|.+-|..+                   ++.+..+...             ....++++|+|+
T Consensus       158 e~~-dg-~lyvn~~~~~~V~vID~~t-------------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~  216 (266)
T 2iwa_A          158 EYI-NG-EVWANIWQTDCIARISAKD-------------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE  216 (266)
T ss_dssp             EEE-TT-EEEEEETTSSEEEEEETTT-------------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred             EEE-CC-EEEEecCCCCeEEEEECCC-------------------CcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence            888 66 6666666788999999998                   7766666421             135689999999


Q ss_pred             CCceEEEeeeCCeEEEeecCcc
Q 018697          326 EPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++.+++++...+.|.+-++.+.
T Consensus       217 ~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          217 NKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCEEEEECCCCCeEEEEEEecc
Confidence            9878899988999998887653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.16  E-value=3.3e-09  Score=88.60  Aligned_cols=201  Identities=10%  Similarity=0.069  Sum_probs=124.3

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeE
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV  192 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  192 (351)
                      +..+...........|+|+++.++++...++.|..|+.. +. .. ....    ....+.+++++++++.+++...++.|
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~-~~~~----~~~~~~gl~~d~dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD-VLLD----ATAFTNGNAVDAQQRLVHCEHGRRAI  109 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE-EEEE----SCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE-EEeC----CCCccceeeECCCCCEEEEECCCCEE
Confidence            334444555667899999998656666678899999874 22 21 1111    12368899999999855554556889


Q ss_pred             EEEEcccCCcCceee--cce----eEEEEcCCCCCcEEEE----ecC-------------CCeEEEEecccCCcceeEee
Q 018697          193 QFWDLRSMGKTNSIE--HAH----VRNVDYDTKKKHLLVT----AAD-------------ESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       193 ~iwd~~~~~~~~~~~--~~~----v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~  249 (351)
                      .+|+.. ++......  ...    +..++++|+|. ++++    |..             .+.|..||..+ ++ +..+.
T Consensus       110 ~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~-~~~~~  185 (305)
T 3dr2_A          110 TRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SP-LQRMA  185 (305)
T ss_dssp             EEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CC-CEEEE
T ss_pred             EEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC-Cc-EEEEe
Confidence            999976 44221111  111    67899999998 6665    332             25677777654 33 23333


Q ss_pred             CCCCceeEEEecCCCCCeEEEeeCC------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          250 GHTHWTWAVCCNPEYDGFILSAGTD------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       250 ~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                       .....+.++|+|++ ..|+.+...      +.|.+|++.....              ........  .....+..++++
T Consensus       186 -~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l--------------~~~~~~~~--~~~~~pdgi~~d  247 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL--------------HDRRHFAS--VPDGLPDGFCVD  247 (305)
T ss_dssp             -EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE--------------EEEEEEEC--CSSSCCCSEEEC
T ss_pred             -cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc--------------cCCeEEEE--CCCCCCCeEEEC
Confidence             34556889999999 766666554      7899999875100              00011111  112335678899


Q ss_pred             CCCCceEEEeeeCCeEEEeecC
Q 018697          324 SREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++|. ++++. .+ .|.+|+..
T Consensus       248 ~~G~-lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          248 RGGW-LWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             TTSC-EEECC-SS-EEEEECTT
T ss_pred             CCCC-EEEec-CC-cEEEECCC
Confidence            9998 55544 34 48888864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.16  E-value=9.7e-09  Score=82.73  Aligned_cols=199  Identities=7%  Similarity=-0.081  Sum_probs=136.4

Q ss_pred             ecCCc--ceeeeeeCCCCCceEEEEeec-CCcceEEEEEcccccCCCCCCcceeeeeeecccc-ceeEEEecCCCCCcEE
Q 018697           62 FSHPN--EIWDLSSCPFDQRIFSTVFST-GESYGAAIWQIPELYGQLNSPQLERIAALDAHVG-KINCVLWWSSGRHDKL  137 (351)
Q Consensus        62 ~~h~~--~v~~i~~~~~~~~l~~~~~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~  137 (351)
                      ..|..  ....+.|+|++ .|+.+.  + ..++.|++.|+.         +++.+..+..... ....+++.  +..+++
T Consensus        15 ~p~~~~~f~~Gl~~~~dg-~Lyvst--g~~~~s~v~~iD~~---------tg~v~~~i~l~~~~fgeGi~~~--g~~lyv   80 (266)
T 2iwa_A           15 FPHDPYAFTQGLVYAEND-TLFEST--GLYGRSSVRQVALQ---------TGKVENIHKMDDSYFGEGLTLL--NEKLYQ   80 (266)
T ss_dssp             EECCTTCCEEEEEECSTT-EEEEEE--CSTTTCEEEEEETT---------TCCEEEEEECCTTCCEEEEEEE--TTEEEE
T ss_pred             EECCCCCCcccEEEeCCC-eEEEEC--CCCCCCEEEEEECC---------CCCEEEEEecCCCcceEEEEEe--CCEEEE
Confidence            34554  35799999986 555542  2 125789999998         5666666542221 22234444  555555


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-------
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-------  210 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  210 (351)
                      +.-.++.+.++|..+.+....+...  .+   .  ...++++++.++++..++.|.++|..+.+....+..+.       
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g--~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~  153 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQ--MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR  153 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECC--SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             EEecCCEEEEEECCCCcEEEEEECC--CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence            5567899999999875444433221  01   1  23355678888888778999999999988777766331       


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------------CCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------------THWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ++.+.|. ++. +++....++.|.+.|..+ .+.+..+...             ....+.|+|+|++.++++++...+.+
T Consensus       154 ~nele~~-dg~-lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          154 LNELEYI-NGE-VWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             EEEEEEE-TTE-EEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ceeEEEE-CCE-EEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            6678887 665 667666788999999998 6667776531             12458999999997788888888999


Q ss_pred             EEEEcCC
Q 018697          278 NLWLVST  284 (351)
Q Consensus       278 ~iwd~~~  284 (351)
                      ...++..
T Consensus       231 ~~i~l~~  237 (266)
T 2iwa_A          231 FEIKLHL  237 (266)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9988876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=1.6e-07  Score=76.75  Aligned_cols=197  Identities=9%  Similarity=-0.032  Sum_probs=124.8

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEccc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRS  199 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  199 (351)
                      ..+..++|++++..++++...++.|..+++.... .......    ......++++++++..|+.+. ..+.|.++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~----~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQ----DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECT----TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEEC----CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            4578999999877655555667899999997532 2222111    112578899999777666654 568999999875


Q ss_pred             CCcCceeecc-e-eEEEEcCCCCCcEEEEecC--CCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCC
Q 018697          200 MGKTNSIEHA-H-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       200 ~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .......... . ...++++|++.+++++...  .+.|..+++.. . ....+. ........++++|++..++++-...
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            4322222222 2 8899999976645555443  47888888763 2 233332 2334578999999873555666667


Q ss_pred             CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       275 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +.|..+|...                   .......... ....+++..  +..++++....+.|.+++..+
T Consensus       189 ~~I~~~~~~g-------------------~~~~~~~~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          189 HRAECLNPAQ-------------------PGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             TEEEEEETTE-------------------EEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEecCC-------------------CceEEEecCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCC
Confidence            8999999875                   2222222221 224566654  343666666678899988763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=3.9e-08  Score=84.41  Aligned_cols=211  Identities=15%  Similarity=0.166  Sum_probs=128.9

Q ss_pred             Eec--CCCCCcEEEEecCCcEEEEEcCCCCCCccccccc-------ccCcccceeeeEECCCCCcEEEeecC------Ce
Q 018697          127 LWW--SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-------SSGMLHYLSGGAWDPHDVNAVAATCE------SS  191 (351)
Q Consensus       127 ~~~--~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d------~~  191 (351)
                      .++  ++++++++.+..++.|+++|+.+.....++....       ..+ ......+...|++ .+++...+      +.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCe
Confidence            446  7788755556678999999997543222221111       001 1134556788998 55555444      78


Q ss_pred             EEEEEcccCCcCceeecce-----eEEEEcCCCCCcEEEEec-------------------CCCeEEEEecccCCcceeE
Q 018697          192 VQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAA-------------------DESGIHLWDLRMLKAPIQE  247 (351)
Q Consensus       192 i~iwd~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~  247 (351)
                      |.++|.++.+.+..+..+.     ...+.|+|+++ .+++..                   ...+|.+||+.+ .+.+.+
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHS  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeE
Confidence            9999999998888776432     55688899998 677663                   368999999987 666777


Q ss_pred             eeCC-C-CceeEEEe--cCCCCCeEEEee------CCCeEEEEEcCCCCCCCCCCcccccCCcccccccc----eeeccc
Q 018697          248 LPGH-T-HWTWAVCC--NPEYDGFILSAG------TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL----NSYSDY  313 (351)
Q Consensus       248 ~~~~-~-~~v~~~~~--~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  313 (351)
                      +..- . .....+.|  +|++ .+++.+.      .+++|.+|....+.-+  ....-+.......+ .+    ..+.+-
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~-~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEG-NLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCS-SCCGGGGGGTEE
T ss_pred             EecCCCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccc-cccccccccccC
Confidence            7642 1 23445555  9999 6655554      5678887766431000  00000000000000 00    000111


Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ......|.++|||+++.++.-..+.|.+||+.
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            23468899999999777777788999999985

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=5e-11  Score=102.38  Aligned_cols=174  Identities=11%  Similarity=0.022  Sum_probs=95.7

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eE
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR  212 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~  212 (351)
                      +++++.|+.|+.||..+++....... .      .+.+..+..++..+++++.|+.|+.||.++++.+.......   +.
T Consensus        12 v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A           12 LFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            67778899999999998766554432 1      34444555667777777899999999999988765554221   21


Q ss_pred             -EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCC
Q 018697          213 -NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP  291 (351)
Q Consensus       213 -~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  291 (351)
                       +..+. .+. .+++++.++.|+.||.++ ++.+..+..+.    ...++|++ ..+++++.|+.|+.||.++       
T Consensus        85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t-------  149 (369)
T 2hz6_A           85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT-------  149 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSS-------
T ss_pred             cCceEe-cCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCC-------
Confidence             11121 233 577788899999999987 65666665443    23456777 7888899999999999998       


Q ss_pred             CcccccCCcccccccceeeccccceEEEEEeCCCC---CceEEEeeeCCeEEEeecCc
Q 018697          292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE---PWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~  346 (351)
                                  ++.+..+..+.  .....+.++.   . .++.++.||.|+.||..+
T Consensus       150 ------------G~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          150 ------------RELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             ------------SSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTT
T ss_pred             ------------CCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCC
Confidence                        66655553221  2233344431   3 466778899999999864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=1.6e-10  Score=99.31  Aligned_cols=182  Identities=9%  Similarity=-0.051  Sum_probs=95.3

Q ss_pred             CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC
Q 018697           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK  155 (351)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  155 (351)
                      ++..++++    +.|+.|..||..         +++.+-.+..  +.+.+..+..++. ++++++.|+.|+.||..+++.
T Consensus         8 ~~~~v~~g----s~dg~v~a~d~~---------tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVS----TLDGSLHAVSKR---------TGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEE----ETTSEEEEEETT---------TCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEE----cCCCEEEEEECC---------CCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCce
Confidence            35566664    578999999987         5666656654  4555555566665 355557899999999987665


Q ss_pred             CcccccccccCcccceee-eEECCCCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCCCeEE
Q 018697          156 NAQVQSKQSSGMLHYLSG-GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      .........    ..+.+ ..+. .+..+++++.++.|+.||.++++.+..+....  ...++|++. .+++++.++.|+
T Consensus        72 ~w~~~~~~~----~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~-~v~~~~~dg~v~  143 (369)
T 2hz6_A           72 LTKLPFTIP----ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTS-LLYLGRTEYTIT  143 (369)
T ss_dssp             SEECSCCHH----HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEE
T ss_pred             eeeeeccCc----cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCC-EEEEEecCCEEE
Confidence            433221110    01111 1111 34567788889999999999999887776432  234556666 688889999999


Q ss_pred             EEecccCCcceeEeeCCCCceeEEEecCCC--CCeEEEeeCCCeEEEEEcCC
Q 018697          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .||.++ ++.+..+..+  ......++++.  ...++.++.||.|..||..+
T Consensus       144 a~d~~t-G~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          144 MYDTKT-RELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             CCCSSS-SSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEECCC-CCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            999987 5555554421  12233344421  13566788899999999988

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=2e-08  Score=79.92  Aligned_cols=189  Identities=11%  Similarity=0.082  Sum_probs=121.9

Q ss_pred             eeeeeeccccc--eeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee
Q 018697          112 RIAALDAHVGK--INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       112 ~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                      .+.++ .|...  ...+.|+ ++ .++.+++.+|  .|+++|+.+++.........      ........++++.|+...
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~------~~FgeGit~~g~~ly~lt  103 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK------RYFGEGISDWKDKIVGLT  103 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT------TCCEEEEEEETTEEEEEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC------ccceeEEEEeCCEEEEEE
Confidence            34455 45433  4788888 55 4555667765  89999999876554443211      232222222455666554


Q ss_pred             -cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--C---CceeEEEe
Q 018697          188 -CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--T---HWTWAVCC  260 (351)
Q Consensus       188 -~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~~v~~~~~  260 (351)
                       .++.+.+||..+.+.+.++..+. -..++  +++.. |+.+..++.|.++|..+ .+.+.++...  .   ..++.+.|
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~-L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~  179 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQY-LIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEW  179 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSC-EEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEE
T ss_pred             eeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCE-EEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEE
Confidence             68999999999999888887543 22333  46663 44455578899999987 4456665532  2   23456777


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc------------cceEEEEEeCCCCCc
Q 018697          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY------------EDSVYGLAWSSREPW  328 (351)
Q Consensus       261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~  328 (351)
                      . +| .+++..-.+..|.+.|..+                   ++.+..+...            ....++|+|+|++..
T Consensus       180 ~-~G-~lyan~w~~~~I~vIDp~t-------------------G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~  238 (262)
T 3nol_A          180 V-DG-EIFANVWQTNKIVRIDPET-------------------GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR  238 (262)
T ss_dssp             E-TT-EEEEEETTSSEEEEECTTT-------------------CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred             E-CC-EEEEEEccCCeEEEEECCC-------------------CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence            6 66 6666666788999999988                   5555544321            235689999999886


Q ss_pred             eEEEee
Q 018697          329 IFASLS  334 (351)
Q Consensus       329 ~l~s~~  334 (351)
                      ++++|-
T Consensus       239 lfVTGK  244 (262)
T 3nol_A          239 LFVTGK  244 (262)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            777764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=2.5e-08  Score=79.42  Aligned_cols=185  Identities=8%  Similarity=0.044  Sum_probs=122.4

Q ss_pred             eecCCcc--eeeeeeCCCCCceEEEEeecCCcc--eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcE
Q 018697           61 LFSHPNE--IWDLSSCPFDQRIFSTVFSTGESY--GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        61 ~~~h~~~--v~~i~~~~~~~~l~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  136 (351)
                      ...|...  ...+.|+ ++ .|..+.   |.++  .|+++|+.         +++.+..+... .........+++..++
T Consensus        36 ~~phd~~~ftqGL~~~-~~-~Lyest---G~~g~S~v~~vD~~---------Tgkv~~~~~l~-~~~FgeGit~~g~~ly  100 (262)
T 3nol_A           36 SYPHDTKAFTEGFFYR-NG-YFYEST---GLNGRSSIRKVDIE---------SGKTLQQIELG-KRYFGEGISDWKDKIV  100 (262)
T ss_dssp             EEECCTTCEEEEEEEE-TT-EEEEEE---EETTEEEEEEECTT---------TCCEEEEEECC-TTCCEEEEEEETTEEE
T ss_pred             EecCCCCcccceEEEE-CC-EEEEEC---CCCCCceEEEEECC---------CCcEEEEEecC-CccceeEEEEeCCEEE
Confidence            3456643  3688888 45 444432   4544  89999998         66776666443 3344433344566656


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---e---
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H---  210 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~---  210 (351)
                      ++.-.++.+.+||..+.+....+....        ....++++++.|+.+..++.|.++|..+.+....+...   .   
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            666678999999999765554443211        22233457788888877889999999998877776642   2   


Q ss_pred             -eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC------------CCceeEEEecCCCCCeEEEe
Q 018697          211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------------THWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~s~  271 (351)
                       ++.+.|. +|. +++..-.+..|.+.|.++ ++.+..+...            ....+.|+|+|+++++++||
T Consensus       173 ~lNELe~~-~G~-lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          173 ELNELEWV-DGE-IFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CEEEEEEE-TTE-EEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccceeEEE-CCE-EEEEEccCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence             5667776 675 676666788999999987 6666666531            13458999999984444544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=2.8e-08  Score=79.08  Aligned_cols=185  Identities=11%  Similarity=0.097  Sum_probs=124.1

Q ss_pred             eecCCcc--eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           61 LFSHPNE--IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        61 ~~~h~~~--v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ...|...  ...+.|+.  ..|..+   .+.++.|+++|+.         +++.+..+ . ..........+++..++++
T Consensus        48 ~~phd~~~ftqGL~~~~--~~Ly~s---tG~~g~v~~iD~~---------Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~l  111 (268)
T 3nok_A           48 EYPHATNAFTQGLVFHQ--GHFFES---TGHQGTLRQLSLE---------SAQPVWME-R-LGNIFAEGLASDGERLYQL  111 (268)
T ss_dssp             EEECCTTCCEEEEEEET--TEEEEE---ETTTTEEEECCSS---------CSSCSEEE-E-CTTCCEEEEEECSSCEEEE
T ss_pred             EEcCCCccccceEEEEC--CEEEEE---cCCCCEEEEEECC---------CCcEEeEE-C-CCCcceeEEEEeCCEEEEE
Confidence            3456543  35778863  455555   3788889999988         55666555 2 2233333334456666666


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-------e
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-------V  211 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------v  211 (351)
                      +-.++.+.+||..+.+....+...   +   .-..++  ++++.|+.+..++.|.++|..+.+....+....       +
T Consensus       112 tw~~~~v~V~D~~Tl~~~~ti~~~---~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          112 TWTEGLLFTWSGMPPQRERTTRYS---G---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             ESSSCEEEEEETTTTEEEEEEECS---S---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EccCCEEEEEECCcCcEEEEEeCC---C---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            677899999999976554444321   1   223444  467888888779999999999988777776322       5


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------------CCceeEEEecCCCCCeEEEee
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------------THWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +.+.|. +|. +++..-.+..|.+.|.++ ++.+..+...             ..-.+.|+++|+++++++||-
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            677776 665 676666788999999987 6666665421             135689999999856666653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.03  E-value=2.9e-07  Score=77.38  Aligned_cols=240  Identities=9%  Similarity=0.030  Sum_probs=140.9

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee--------------------ccccceeE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--------------------AHVGKINC  125 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--------------------~h~~~v~~  125 (351)
                      ....+++|.+++..+++.    ..++.|..|+..         ... +..+.                    .....+..
T Consensus        19 ~~p~~i~~d~~g~~l~v~----~~~~~i~~~~~~---------~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g   84 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTS----VQDGRVIKYEGP---------NSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYD   84 (322)
T ss_dssp             SCCCCEECCTTCSSEEEE----CTTSEEEEECCT---------TTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred             CCceEEEEcCCCCEEEEE----cCCCeEEEECCC---------CCc-eEEEecccccccccccccccchhccccCCCCce
Confidence            345678899988766664    567888888765         111 11111                    01135788


Q ss_pred             EEecC-CCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC-CCCcEEEeec---------------
Q 018697          126 VLWWS-SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATC---------------  188 (351)
Q Consensus       126 ~~~~~-~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---------------  188 (351)
                      +++.+ ++.  ++++...+.|..+|..++. ...+..............+++.+ ++...++...               
T Consensus        85 i~~~~~~g~--l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           85 ISYNLQNNQ--LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEETTTTE--EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             EEEcCCCCc--EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            99997 665  4555334558888876432 11111111001112467899999 8875555322               


Q ss_pred             --CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC-cceeEeeCCCCceeEEEecCCC
Q 018697          189 --ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       189 --d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                        ++.|..+|..+++......... ...++++|+++.++++-..++.|.+|++.... .....+..... ...++++++|
T Consensus       162 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G  240 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG  240 (322)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS
T ss_pred             CCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC
Confidence              3678888877654322222112 77899999998555555677899999987421 11222221223 7889999999


Q ss_pred             CCeEEEeeC----------CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc----cceEEEEEeCCCCCceE
Q 018697          265 DGFILSAGT----------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY----EDSVYGLAWSSREPWIF  330 (351)
Q Consensus       265 ~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l  330 (351)
                       .+.++...          .+.|..+|..                    ++.+..+...    -..+..+++ .++. ++
T Consensus       241 -~l~va~~~~~~~~~~~~~~~~v~~~d~~--------------------G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~  297 (322)
T 2fp8_A          241 -HFWVSSSEELDGNMHGRVDPKGIKFDEF--------------------GNILEVIPLPPPFAGEHFEQIQE-HDGL-LY  297 (322)
T ss_dssp             -CEEEEEEEETTSSTTSCEEEEEEEECTT--------------------SCEEEEEECCTTTTTSCCCEEEE-ETTE-EE
T ss_pred             -CEEEEecCcccccccCCCccEEEEECCC--------------------CCEEEEEECCCCCccccceEEEE-eCCE-EE
Confidence             66665544          4567777754                    3444444322    134566666 3455 77


Q ss_pred             EEeeeCCeEEEeecCc
Q 018697          331 ASLSYDGRVVVESVKP  346 (351)
Q Consensus       331 ~s~~~dg~v~vw~~~~  346 (351)
                      ++....+.|.++++..
T Consensus       298 v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          298 IGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECSSCSEEEEEEC--
T ss_pred             EeecCCCceEEEeccc
Confidence            7777788999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=5e-08  Score=90.39  Aligned_cols=197  Identities=9%  Similarity=-0.031  Sum_probs=126.4

Q ss_pred             EEEecCCCCCcEEEEecCC-------------------cEEEEEcCCCCCCcccccccccC----cccceeeeEECCCC-
Q 018697          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSG----MLHYLSGGAWDPHD-  180 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~-  180 (351)
                      .+++.|++.. ++++..++                   .|..+|..+++............    ......-+....+| 
T Consensus       247 ~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            5678888774 44443332                   58999998876655443221100    01112222233356 


Q ss_pred             --CcEEEeecCCeEEEEEcccCCcCceeecce-------------------------------------eEEEEcCCCCC
Q 018697          181 --VNAVAATCESSVQFWDLRSMGKTNSIEHAH-------------------------------------VRNVDYDTKKK  221 (351)
Q Consensus       181 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------v~~~~~~~~~~  221 (351)
                        +.++.++.+|.++++|.++++.+..+....                                     -..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              578888899999999999998765554211                                     12567888887


Q ss_pred             cEEEEecC-------------------------------------------CCeEEEEecccCCcceeEeeCCCCceeEE
Q 018697          222 HLLVTAAD-------------------------------------------ESGIHLWDLRMLKAPIQELPGHTHWTWAV  258 (351)
Q Consensus       222 ~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  258 (351)
                       ++++...                                           .+.|..||+.+ ++.+.++. +..++...
T Consensus       406 -~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~-~~~~~~~g  482 (677)
T 1kb0_A          406 -LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVE-HVSPWNGG  482 (677)
T ss_dssp             -EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEE-ESSSCCCC
T ss_pred             -EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecC-CCCCCcCc
Confidence             5655432                                           27899999987 65666655 33445555


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc-ceEEEEEeCCCCCceEEEeee--
Q 018697          259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSY--  335 (351)
Q Consensus       259 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~--  335 (351)
                      .+...+ .+++.++.|+.+++||.++                   ++.+..+.... ....-+.|.++|+.+++..+.  
T Consensus       483 ~~~~~g-~~v~~g~~dg~l~a~D~~t-------------------G~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~  542 (677)
T 1kb0_A          483 TLTTAG-NVVFQGTADGRLVAYHAAT-------------------GEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWG  542 (677)
T ss_dssp             EEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             ceEeCC-CEEEEECCCCcEEEEECCC-------------------CceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCC
Confidence            566777 7888889999999999999                   88888876432 222345667788755555332  


Q ss_pred             --------------CCeEEEeecC
Q 018697          336 --------------DGRVVVESVK  345 (351)
Q Consensus       336 --------------dg~v~vw~~~  345 (351)
                                    .+.+..|.+.
T Consensus       543 ~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          543 GVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             HHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             ccccccccccccCCCCeEEEEecc
Confidence                          4678888776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.99  E-value=6.4e-08  Score=89.84  Aligned_cols=186  Identities=10%  Similarity=0.022  Sum_probs=117.4

Q ss_pred             EEEecCCCCCcEEEEecCC-------------------cEEEEEcCCCCCCcccccccccC----cccceeeeEECCCCC
Q 018697          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSG----MLHYLSGGAWDPHDV  181 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~  181 (351)
                      .+++.|+... ++++..++                   .|..+|..+++............    ...++.......+++
T Consensus       239 ~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            5678887763 55554444                   49999999877655443321110    011111112222444


Q ss_pred             ---cEEEeecCCeEEEEEcccCCcCceeecce-----------------------------------------eEEEEcC
Q 018697          182 ---NAVAATCESSVQFWDLRSMGKTNSIEHAH-----------------------------------------VRNVDYD  217 (351)
Q Consensus       182 ---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------------------------v~~~~~~  217 (351)
                         .++.++.+|.++++|.++++.+.......                                         ...++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               67888899999999999998763222110                                         1236788


Q ss_pred             CCCCcEEEEecC---------------------------------------------CCeEEEEecccCCcceeEeeCCC
Q 018697          218 TKKKHLLVTAAD---------------------------------------------ESGIHLWDLRMLKAPIQELPGHT  252 (351)
Q Consensus       218 ~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~  252 (351)
                      |+.. ++++...                                             +|.|+.||+.+ ++.+.++..+.
T Consensus       398 p~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~  475 (689)
T 1yiq_A          398 PDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT  475 (689)
T ss_dssp             TTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred             CCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence            8877 5555421                                             37899999987 66666665433


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce-EEEEEeCCCCCceEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFA  331 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~  331 (351)
                       +...-.+...+ .+++.++.|+.++.||.++                   ++.+..++..... ..-+.|..+|+.+++
T Consensus       476 -~~~~g~~~tag-glvf~gt~dg~l~a~D~~t-------------------G~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          476 -IFNGGTLSTAG-NLVFEGSADGRVIAYAADT-------------------GEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             -SCCCCEEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             -CccCccceECC-CEEEEECCCCcEEEEECCC-------------------CccceeeeCCCCcccCceEEEECCEEEEE
Confidence             33334556666 7888999999999999999                   8888877644321 234667788886666


Q ss_pred             Eee
Q 018697          332 SLS  334 (351)
Q Consensus       332 s~~  334 (351)
                      ..+
T Consensus       535 ~~~  537 (689)
T 1yiq_A          535 FMA  537 (689)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.98  E-value=6e-08  Score=77.22  Aligned_cols=188  Identities=11%  Similarity=-0.007  Sum_probs=123.8

Q ss_pred             eeeeeeccccc--eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ec
Q 018697          112 RIAALDAHVGK--INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TC  188 (351)
Q Consensus       112 ~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  188 (351)
                      .+.++ .|...  ...+.|+.  ..++++++.+|.|+++|+.+++..... ...    ......+++  +++.|+.. -.
T Consensus        45 Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~----~~FgeGit~--~g~~Ly~ltw~  114 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG----NIFAEGLAS--DGERLYQLTWT  114 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT----TCCEEEEEE--CSSCEEEEESS
T ss_pred             EEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC----CcceeEEEE--eCCEEEEEEcc
Confidence            34444 45433  46788873  445666688899999999987766655 221    001223444  44555554 46


Q ss_pred             CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeC--CC---CceeEEEecC
Q 018697          189 ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HT---HWTWAVCCNP  262 (351)
Q Consensus       189 d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~  262 (351)
                      ++.+.+||..+.+.+.++.... -..++  +++. .|+.+..++.|+++|..+ .+.+.++..  +.   ..++.+.|. 
T Consensus       115 ~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~-~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          115 EGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNG-KLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             SCEEEEEETTTTEEEEEEECSSCCCCEE--EETT-EEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CCEEEEEECCcCcEEEEEeCCCceeEEe--cCCC-EEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-
Confidence            8999999999998888887443 33333  4666 455455688999999987 455666553  22   234677777 


Q ss_pred             CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc-------------cceEEEEEeCCCCCce
Q 018697          263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------------EDSVYGLAWSSREPWI  329 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~  329 (351)
                      +| .+++..-.+..|.+.|..+                   ++.+..+...             ....++|+|+|++..+
T Consensus       190 dG-~lyanvw~s~~I~vIDp~T-------------------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          190 NG-VIYANIWHSSDVLEIDPAT-------------------GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             TT-EEEEEETTCSEEEEECTTT-------------------CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             CC-EEEEEECCCCeEEEEeCCC-------------------CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence            66 6666665688999999998                   6655554321             2357899999988867


Q ss_pred             EEEee
Q 018697          330 FASLS  334 (351)
Q Consensus       330 l~s~~  334 (351)
                      +++|-
T Consensus       250 fVTGK  254 (268)
T 3nok_A          250 FMTGK  254 (268)
T ss_dssp             EEEET
T ss_pred             EEeCC
Confidence            77774

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=2.6e-08  Score=92.23  Aligned_cols=233  Identities=10%  Similarity=0.037  Sum_probs=143.1

Q ss_pred             CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-c----cceeEEEecCCCCCcEEEEec------CCc
Q 018697           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-V----GKINCVLWWSSGRHDKLVSID------EEN  144 (351)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~~~~~~~~~~~~~~~~~------d~~  144 (351)
                      .+..+++.    +.|+.|..+|..         +++.+-.+..+ .    ..+.+--...++.  +++++.      ++.
T Consensus       127 ~~~~v~v~----~~dg~l~alD~~---------tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~--v~v~~~~~~~~~~g~  191 (677)
T 1kb0_A          127 WKGKVYVG----AWDGRLIALDAA---------TGKEVWHQNTFEGQKGSLTITGAPRVFKGK--VIIGNGGAEYGVRGY  191 (677)
T ss_dssp             ETTEEEEE----CTTSEEEEEETT---------TCCEEEEEETTTTCCSSCBCCSCCEEETTE--EEECCBCTTTCCBCE
T ss_pred             ECCEEEEE----cCCCEEEEEECC---------CCCEEeeecCCcCcCcCcccccCcEEECCE--EEEEecccccCCCCE
Confidence            35566664    578899999987         55665555433 1    1111110111333  455432      689


Q ss_pred             EEEEEcCCCCCCccccccccc---------------------------CcccceeeeEECCCCCcEEEeecCC-------
Q 018697          145 IFLWSLDCSNKNAQVQSKQSS---------------------------GMLHYLSGGAWDPHDVNAVAATCES-------  190 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~l~~~~~d~-------  190 (351)
                      |+.+|..+++...........                           +.......++++|++..+++++.++       
T Consensus       192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~  271 (677)
T 1kb0_A          192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKV  271 (677)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCC
Confidence            999999987765443321110                           0001123568888888888876553       


Q ss_pred             ------------eEEEEEcccCCcCceeecce-----------eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCcce
Q 018697          191 ------------SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       191 ------------~i~iwd~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                                  .|..+|.++++.+..++..+           ...+....+|+  ..++.++.+|.++++|.++ ++++
T Consensus       272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l  350 (677)
T 1kb0_A          272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFI  350 (677)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEE
T ss_pred             CCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEe
Confidence                        59999999998877765321           12222223562  3788899999999999987 6565


Q ss_pred             eEeeCCC-----------Cce------------------------eEEEecCCCCCeEEEeeCC----------------
Q 018697          246 QELPGHT-----------HWT------------------------WAVCCNPEYDGFILSAGTD----------------  274 (351)
Q Consensus       246 ~~~~~~~-----------~~v------------------------~~~~~~~~~~~~l~s~~~d----------------  274 (351)
                      ..+....           .++                        ..++++|++ .++++...+                
T Consensus       351 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~  429 (677)
T 1kb0_A          351 SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQA  429 (677)
T ss_dssp             EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCC
T ss_pred             ccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccccccc
Confidence            5543211           111                        146788887 666665432                


Q ss_pred             ---------------------------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          275 ---------------------------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       275 ---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                                                 +.|..||+.+                   ++.+..+.. ..++.+..+..++.
T Consensus       430 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-------------------G~~~W~~~~-~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          430 GPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-------------------QKAAWSVEH-VSPWNGGTLTTAGN  489 (677)
T ss_dssp             CTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-------------------TEEEEEEEE-SSSCCCCEEEETTT
T ss_pred             cccccccccccccccccccccCCCCCccEEEEEeCCC-------------------CcEEeecCC-CCCCcCcceEeCCC
Confidence                                       6677788777                   666666543 23345555666677


Q ss_pred             ceEEEeeeCCeEEEeecCc
Q 018697          328 WIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       328 ~~l~s~~~dg~v~vw~~~~  346 (351)
                       +++.++.||.+++||..+
T Consensus       490 -~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          490 -VVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             -EEEEECTTSEEEEEETTT
T ss_pred             -EEEEECCCCcEEEEECCC
Confidence             677789999999999875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.98  E-value=6e-08  Score=81.66  Aligned_cols=220  Identities=5%  Similarity=-0.090  Sum_probs=137.6

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~  156 (351)
                      +..+.++    ..++.|..+|..          ++.......+...+.++...+++.  +.+++.++.|..+|.. +...
T Consensus       107 ~~~l~v~----t~~~~l~~~d~~----------g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~  169 (330)
T 3hxj_A          107 EDILYVT----SMDGHLYAINTD----------GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEK  169 (330)
T ss_dssp             TTEEEEE----CTTSEEEEECTT----------SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEE
T ss_pred             CCEEEEE----ecCCEEEEEcCC----------CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEe
Confidence            3445553    467778888754          223333334444566667777777  6677777899999987 4332


Q ss_pred             cccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEE
Q 018697          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIH  234 (351)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~  234 (351)
                      .....     ....+.++...+++. +.+++  +.|..+| .+++.........  +.++...+++.  +..++.++.|.
T Consensus       170 ~~~~~-----~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~  238 (330)
T 3hxj_A          170 WRFKT-----NDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLY  238 (330)
T ss_dssp             EEEEC-----SSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEE
T ss_pred             EEEec-----CCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEE
Confidence            22221     122566677777666 44555  7899999 6666555554332  77888888885  45577778888


Q ss_pred             EEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc
Q 018697          235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE  314 (351)
Q Consensus       235 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (351)
                      .+|..  +..+..+......+..+.+.+++  .|..++.++.|..+|. .                   ++.+..+....
T Consensus       239 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~-------------------g~~~~~~~~~~  294 (330)
T 3hxj_A          239 AINPD--GTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-D-------------------GTEKWNFETGS  294 (330)
T ss_dssp             EECTT--SCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-T-------------------SCEEEEEECSS
T ss_pred             EECCC--CCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-C-------------------CcEEEEEEcCC
Confidence            88753  44555555444445556666555  5666777888999986 4                   45555554444


Q ss_pred             ceEEEEEeCCCCCceEEEeeeCCeEEEeecCccccc
Q 018697          315 DSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR  350 (351)
Q Consensus       315 ~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  350 (351)
                      ..+.++...+++.  |..++.+|.+++...+...++
T Consensus       295 ~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~~~~~  328 (330)
T 3hxj_A          295 WIIATPVIDENGT--IYFGTRNGKFYALFNLEHHHH  328 (330)
T ss_dssp             CCCSCCEECTTCC--EEEECTTSCEEEEEC------
T ss_pred             ccccceEEcCCCE--EEEEcCCCeEEEEeccccccc
Confidence            5567777878876  556888999999887655443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.92  E-value=2.3e-07  Score=73.29  Aligned_cols=185  Identities=11%  Similarity=0.055  Sum_probs=121.2

Q ss_pred             ecCCc--ceeeeeeCCCCCceEEEEeecCCc--ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           62 FSHPN--EIWDLSSCPFDQRIFSTVFSTGES--YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        62 ~~h~~--~v~~i~~~~~~~~l~~~~~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ..|..  -...+.|++ + .|..+   .+.+  ..|+.+|+.         +++.+..+.... ........+.+..++.
T Consensus        15 ~phd~~~ftqGL~~~~-~-~Lyes---tG~~g~S~v~~vD~~---------tgkv~~~~~l~~-~~fgeGi~~~~~~ly~   79 (243)
T 3mbr_X           15 YPHDTTAFTEGLFYLR-G-HLYES---TGETGRSSVRKVDLE---------TGRILQRAEVPP-PYFGAGIVAWRDRLIQ   79 (243)
T ss_dssp             EECCTTCCEEEEEEET-T-EEEEE---ECCTTSCEEEEEETT---------TCCEEEEEECCT-TCCEEEEEEETTEEEE
T ss_pred             cCCCCccccccEEEEC-C-EEEEE---CCCCCCceEEEEECC---------CCCEEEEEeCCC-CcceeEEEEeCCEEEE
Confidence            45664  455888886 4 44444   2454  489999998         667666664332 2333333334565566


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-------
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-------  210 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  210 (351)
                      ++-.++.+.+||..+.+....+...   +   .-..++  +++..|+++..++.|.++|..+.+....+....       
T Consensus        80 ltw~~~~v~v~D~~tl~~~~ti~~~---~---~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPRARFRYP---G---EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEECS---S---CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             EEeeCCEEEEEECCcCcEEEEEeCC---C---CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence            6677899999999875544443321   1   223444  567888888778999999999988777776421       


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC-------------CCceeEEEecCCCCCeEEEee
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-------------THWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      ++.+.+. +|+ +++..-.+..|.+.|.++ ++.+..+...             ..-.+.|+++|++.++++||-
T Consensus       152 lNeLe~~-~G~-lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          152 LNELEWV-NGE-LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEE-TTE-EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ceeeEEe-CCE-EEEEECCCCeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            6667765 565 666665678999999987 6666665411             135689999999855555553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.92  E-value=1.7e-08  Score=89.60  Aligned_cols=202  Identities=14%  Similarity=0.068  Sum_probs=128.1

Q ss_pred             CCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-C-CCCCcEEEee------------------cC
Q 018697          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-D-PHDVNAVAAT------------------CE  189 (351)
Q Consensus       130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d  189 (351)
                      +||+++++....+..|.+.|+.+.+... ++....   ......+++ + |+++++++++                  .+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~-ii~ip~---g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDA-ILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEE-EEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEee-EEeCCC---CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence            3788756655667889999999744322 222111   125667787 5 8999998884                  24


Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC-------------------------------------
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-------------------------------------  231 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-------------------------------------  231 (351)
                      +.+.+.|..+.+...++..+. ...++++|+|++ +++.+.+.                                     
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~-~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKW-AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCeEEEEEEeCCCccceEECCCCCE-EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            689999999888777777433 667889999995 44444332                                     


Q ss_pred             -eEEEEeccc--CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccce
Q 018697          232 -GIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN  308 (351)
Q Consensus       232 -~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                       .|.+.|.++  ....+..+.. .....++.++|||..+++++..+.+|.++|+.+....   .   +. ........+.
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~---~---~~-~l~~~~~v~~  325 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV---F---YE-NADPRSAVVA  325 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH---H---HS-CCCGGGGEEE
T ss_pred             CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc---c---cc-ccCcccceEE
Confidence             266666654  1111333332 2345779999999445556667889999999861000   0   00 0000012233


Q ss_pred             eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .... ......++|+|+| ...++.-.|+.|.+|+++.
T Consensus       326 ~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          326 EPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            3332 2347899999999 5788888999999999875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=3.5e-07  Score=72.18  Aligned_cols=191  Identities=8%  Similarity=0.026  Sum_probs=121.5

Q ss_pred             eeeeeeeccc--cceeEEEecCCCCCcEEEEecC--CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe
Q 018697          111 ERIAALDAHV--GKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       111 ~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                      +.+.++ .|.  .-...+.|++ + .++.+++.+  ..|+.+|+.+++.........    ...-..++.  .++.|+..
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----~~fgeGi~~--~~~~ly~l   80 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPP----PYFGAGIVA--WRDRLIQL   80 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCT----TCCEEEEEE--ETTEEEEE
T ss_pred             EEEEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCC----CcceeEEEE--eCCEEEEE
Confidence            455555 564  3466899986 3 345555654  489999999876544432221    001123333  34555554


Q ss_pred             -ecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--C---CceeEEE
Q 018697          187 -TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--T---HWTWAVC  259 (351)
Q Consensus       187 -~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~~v~~~~  259 (351)
                       -.++.+.+||..+.+.+.++..+. -..++  +++..+++ +..++.|.++|..+ .+.+.++...  .   ..++.+.
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~v-Sdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYM-SDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEE-ECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEE
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEE-ECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeE
Confidence             468999999999998888887544 33444  45664555 45588999999987 4456665532  2   2456667


Q ss_pred             ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-------------ccceEEEEEeCCCC
Q 018697          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------------YEDSVYGLAWSSRE  326 (351)
Q Consensus       260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~  326 (351)
                      |. +| .+++..-.+..|.+.|..+                   ++.+..+.-             .....++|+++|++
T Consensus       157 ~~-~G-~lyanvw~s~~I~vIDp~t-------------------G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~  215 (243)
T 3mbr_X          157 WV-NG-ELLANVWLTSRIARIDPAS-------------------GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH  215 (243)
T ss_dssp             EE-TT-EEEEEETTTTEEEEECTTT-------------------CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred             Ee-CC-EEEEEECCCCeEEEEECCC-------------------CCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence            66 55 5555555677999999998                   555544421             12357899999988


Q ss_pred             CceEEEeee
Q 018697          327 PWIFASLSY  335 (351)
Q Consensus       327 ~~~l~s~~~  335 (351)
                      ..++++|-.
T Consensus       216 ~~lfVTGK~  224 (243)
T 3mbr_X          216 DRLFVTGKR  224 (243)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEECCC
Confidence            867777753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.87  E-value=5.4e-06  Score=69.05  Aligned_cols=225  Identities=8%  Similarity=-0.033  Sum_probs=130.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--  143 (351)
                      .....++|.+++..+++    ...++.|..|+..         . .....+ .....+..+++.++++ ++++.....  
T Consensus        32 ~~pegia~~~~g~lyv~----d~~~~~I~~~d~~---------g-~~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~   95 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVT----NHEVGEIVSITPD---------G-NQQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI   95 (306)
T ss_dssp             CCEEEEEECTTSCEEEE----ETTTTEEEEECTT---------C-CEEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEE----eCCCCeEEEECCC---------C-ceEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc
Confidence            46678999998874444    2467788888865         1 222222 2235688999999998 444443322  


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCc-Cce--------eecce---e
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNS--------IEHAH---V  211 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~--------~~~~~---v  211 (351)
                      .|..++..++.. ..+....  . ......++..+++..+++-..++.|+++|...++. +..        .....   .
T Consensus        96 ~v~~~d~~~g~~-~~~~~~~--~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           96 PVVSLVKSDGTV-ETLLTLP--D-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEEEEECTTSCE-EEEEECT--T-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             eEEEEcCCCCeE-EEEEeCC--C-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            466667655432 1111111  1 11234445444443333333578899998764311 100        00011   5


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCC
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE  289 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  289 (351)
                      +.+  +|++++++++-...+.|..||+...+.  ....+.. ......++++++| .++++....+.|.++|..      
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~------  241 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD------  241 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTT------
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCC------
Confidence            555  788876777777888999999864121  1122211 1345778999999 787777778889999864      


Q ss_pred             CCCcccccCCccccccc--ceeeccccceEEEEEeC---CCCCceEEEee
Q 018697          290 LPSESLVESPNQRANSL--LNSYSDYEDSVYGLAWS---SREPWIFASLS  334 (351)
Q Consensus       290 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~s~~  334 (351)
                                    ++.  +..+......+++++|.   |++..++++..
T Consensus       242 --------------G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          242 --------------RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             --------------CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             --------------CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence                          232  22232222457899998   88775555544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.87  E-value=7.1e-06  Score=69.63  Aligned_cols=234  Identities=9%  Similarity=-0.008  Sum_probs=138.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      +...|.+..+ ...|+.+     ....|+..++.         .... ..+......+..++|.+....++++-...+.|
T Consensus        34 d~~~C~~~~~-~~~ll~~-----~~~~I~~i~~~---------g~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I   97 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFA-----NRIDIRQVLPH---------RSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRI   97 (349)
T ss_dssp             TSSCEEESSS-CCEEEEE-----CBSCEEEECTT---------SCCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCccccccc-CceeEee-----cccceEEEeCC---------CCee-EEeecCCCceEEEEEeccccEEEEEeccCCce
Confidence            3445555555 3455543     34457777665         2122 22222334578999998777545554667899


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCc
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKH  222 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~  222 (351)
                      ..++++... ...+....    .....++++.+.+..|+.+ ...+.|.+.++........+... . ...++++|.+..
T Consensus        98 ~r~~~~g~~-~~~~~~~~----~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~  172 (349)
T 3v64_C           98 LRANLNGSN-VEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  172 (349)
T ss_dssp             EEEETTSCS-CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred             EEEecCCCC-ceEEEeCC----CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence            999987533 22221111    1246788898766666555 45689999998754332222212 2 889999997765


Q ss_pred             EEEEecCC-CeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          223 LLVTAADE-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       223 ~l~~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      ++++-..+ +.|..+++..  .....+ ...-...+.|+++|++..+.++-...+.|..+|+..                
T Consensus       173 ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG----------------  234 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------------  234 (349)
T ss_dssp             EEEEECSSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------
T ss_pred             EEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC----------------
Confidence            66666665 8899998874  223333 223345789999987745666666678899999864                


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                         ......+........++++. .+. ++.+-...+.|..++
T Consensus       235 ---~~~~~~~~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~  272 (349)
T 3v64_C          235 ---SHRKAVISQGLPHPFAITVF-EDS-LYWTDWHTKSINSAN  272 (349)
T ss_dssp             ---CSCEEEECSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEE
T ss_pred             ---CceEEEEeCCCCCceEEEEE-CCE-EEEecCCCCeEEEEE
Confidence               11111111112234566663 333 566665666676665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.84  E-value=5.2e-06  Score=78.04  Aligned_cols=197  Identities=11%  Similarity=0.168  Sum_probs=111.5

Q ss_pred             ceeeeeeC-CCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcc-eeee-eeeccccceeEEEecCCCCCcEEEEecC
Q 018697           67 EIWDLSSC-PFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQL-ERIA-ALDAHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        67 ~v~~i~~~-~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~-~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      .+...+|| |||+.|+.+...+|.+ ..|+++|+..         + +.+. .+.   .....+.|+||++.++++...+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~---------g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD---------PSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC---------TTCCCCCCEE---EECSCCEECSSTTEEEEEEECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC---------CCEeCCcccc---CceeeEEEecCCCEEEEEEECC
Confidence            67889999 9999888765433333 4699999872         2 2111 111   1234688999998644444321


Q ss_pred             ----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee---cCCeEEEEEcccCC-cC--ceeecce--
Q 018697          143 ----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMG-KT--NSIEHAH--  210 (351)
Q Consensus       143 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~-~~--~~~~~~~--  210 (351)
                          ..|+++++.++..........  ........+.|+||+++|+..+   ....|+++|+.++. ..  ..+....  
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEEC--CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCEEEEEECCCCchhcEEEEec--CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence                357888887643221222111  1112456789999999988765   34578889988753 12  2222111  


Q ss_pred             -eEEEEcCCCCCcEEEEecCC----CeEEEEecccCCcceeE-eeCCCC--ceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          211 -VRNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQE-LPGHTH--WTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       211 -v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                       ..++.|+. +..+++....+    ..|..+|+... ..... +..+..  .+..+.+.  +..++++...++..++|-
T Consensus       321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence             45555544 44355555443    35666676532 12233 333443  34455554  436777778888655543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=1.2e-06  Score=75.23  Aligned_cols=222  Identities=10%  Similarity=-0.007  Sum_probs=128.1

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccce-----eEEEecCCCCCcEEEEecCCcEEEEEcC
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLD  151 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~~~~~~d~~v~iwd~~  151 (351)
                      +..+++.    ..++.|..+|..         +++.+-.........     ...... ++.  ++++..++.+..+|..
T Consensus       143 ~~~v~v~----~~~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~--v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          143 DGLVLIH----TSNGQLQALNEA---------DGAVKWTVNLDMPSLSLRGESAPTTA-FGA--AVVGGDNGRVSAVLME  206 (376)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEECCC-----CCCCCCEEE-TTE--EEECCTTTEEEEEETT
T ss_pred             CCEEEEE----cCCCeEEEEECC---------CCcEEEEEeCCCCceeecCCCCcEEE-CCE--EEEEcCCCEEEEEECC
Confidence            3455553    578889999986         444444433221110     111111 333  6666778999999998


Q ss_pred             CCCCCcccccccccCcc--cceeeeEECC--CCCcEEEeecCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEe
Q 018697          152 CSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTA  227 (351)
Q Consensus       152 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  227 (351)
                      +++...........+..  ..+..+.-.|  .+..+++++.++.+..+|.++++............+...  +. .++.+
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~-~l~~~  283 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD--GN-RIYLV  283 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE--TT-EEEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE--CC-EEEEE
Confidence            76554433221100000  0000011111  246677888899999999999987766553334444443  33 56667


Q ss_pred             cCCCeEEEEecccCCcceeEeeC-CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018697          228 ADESGIHLWDLRMLKAPIQELPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      +.++.|..+|.++ ++.+..... ....+..+...  + ..|+.++.+|.|.++|..+                   ++.
T Consensus       284 ~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~t-------------------G~~  340 (376)
T 3q7m_A          284 DQNDRVMALTIDG-GVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVED-------------------GRF  340 (376)
T ss_dssp             ETTCCEEEEETTT-CCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTT-------------------CCE
T ss_pred             cCCCeEEEEECCC-CcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCC-------------------CcE
Confidence            8889999999987 555555442 22223333332  3 5788888899999999998                   676


Q ss_pred             ceeeccccceEEE-EEeCCCCCceEEEeeeCCeEEEee
Q 018697          307 LNSYSDYEDSVYG-LAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       307 ~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      +.........+.. ... .+ . .|..++.+|.|+.|+
T Consensus       341 ~~~~~~~~~~~~~~~~~-~~-~-~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          341 VAQQKVDSSGFQTEPVA-AD-G-KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEECCTTCBCSCCEE-ET-T-EEEEEBTTSCEEEEE
T ss_pred             EEEEecCCCcceeCCEE-EC-C-EEEEEeCCCEEEEEe
Confidence            6655442222322 222 23 3 577788899999886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.84  E-value=3.3e-07  Score=85.11  Aligned_cols=230  Identities=10%  Similarity=0.056  Sum_probs=138.2

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecC---CCCCcEEEEe------cCCcE
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWS---SGRHDKLVSI------DEENI  145 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~---~~~~~~~~~~------~d~~v  145 (351)
                      +..+++.    +.|+.|..+|..         +++.+-.+...  ......+..+|   ++.  ++++.      .++.|
T Consensus       121 ~g~v~v~----~~dg~l~AlDa~---------TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v  185 (689)
T 1yiq_A          121 KGKVYVG----VLDGRLEAIDAK---------TGQRAWSVDTRADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYV  185 (689)
T ss_dssp             TTEEEEE----CTTSEEEEEETT---------TCCEEEEEECCSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEE
T ss_pred             CCEEEEE----ccCCEEEEEECC---------CCCEeeeecCcCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEE
Confidence            4566664    578999999987         45554443321  11111111122   343  44442      26899


Q ss_pred             EEEEcCCCCCCccccccccc--------------------------CcccceeeeEECCCCCcEEEeecCC---------
Q 018697          146 FLWSLDCSNKNAQVQSKQSS--------------------------GMLHYLSGGAWDPHDVNAVAATCES---------  190 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~~~d~---------  190 (351)
                      +.||..+++...........                          +.......++++|+...+++++.++         
T Consensus       186 ~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~  265 (689)
T 1yiq_A          186 TAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRS  265 (689)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHH
T ss_pred             EEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCC
Confidence            99999987765443321000                          0001113568888888888887765         


Q ss_pred             ----------eEEEEEcccCCcCceeecce-------------eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCcce
Q 018697          191 ----------SVQFWDLRSMGKTNSIEHAH-------------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       191 ----------~i~iwd~~~~~~~~~~~~~~-------------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                                .|..+|.++++.+..++..+             +..+.+  +|+  ..++.++.+|.++++|.++ ++++
T Consensus       266 ~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~t-G~~l  342 (689)
T 1yiq_A          266 QAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRAT-GELL  342 (689)
T ss_dssp             TTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTT-CCEE
T ss_pred             CCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCC-CCEe
Confidence                      39999999999887765321             112222  332  2678899999999999987 5555


Q ss_pred             eEeeCCC-Cc--------------------------------------eeEEEecCCCCCeEEEeeC-------------
Q 018697          246 QELPGHT-HW--------------------------------------TWAVCCNPEYDGFILSAGT-------------  273 (351)
Q Consensus       246 ~~~~~~~-~~--------------------------------------v~~~~~~~~~~~~l~s~~~-------------  273 (351)
                      ....... .+                                      -..++++|+. .++++...             
T Consensus       343 ~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          343 SAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCC
T ss_pred             ccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeeccccc
Confidence            3222100 00                                      0126788887 66666533             


Q ss_pred             --------------------------------CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          274 --------------------------------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       274 --------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                                                      +|.|..||+.+                   ++.+..+..+.. +..-.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-------------------G~~~W~~~~~~~-~~~g~  481 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-------------------QQAAWEVPYVTI-FNGGT  481 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-------------------TEEEEEEEESSS-CCCCE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-------------------CCeEeEccCCCC-ccCcc
Confidence                                            25677777766                   666666654432 33334


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecCc
Q 018697          322 WSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      +...+. +++.++.||.|+.||.++
T Consensus       482 ~~tagg-lvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          482 LSTAGN-LVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             EEETTT-EEEEECTTSEEEEEETTT
T ss_pred             ceECCC-EEEEECCCCcEEEEECCC
Confidence            555666 788899999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.83  E-value=1.3e-05  Score=68.05  Aligned_cols=201  Identities=9%  Similarity=-0.054  Sum_probs=126.5

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      ....+..++|.+.+..|+.+   ....+.|..+++..         ......+.........+++.+.+..++++-...+
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~---D~~~~~I~r~~~~g---------~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWS---DVTLDRILRANLNG---------SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETTS---------CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEEeccccEEEEE---eccCCceEEEecCC---------CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            34557899999887777765   35667888888762         1222222222344578889887665455556678


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cC-CeEEEEEcccCCcCceeec-ce-eEEEEcCCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE-SSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTK  219 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~-~~-v~~~~~~~~  219 (351)
                      .|.+.+++... ...+.. .   ......+++++|.+..|+.+. .. +.|..+++........+.. .. ...++++|+
T Consensus       139 ~I~~~~~dG~~-~~~l~~-~---~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          139 RIEVANLDGAH-RKVLLW-Q---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             EEEEEETTSCS-CEEEEC-T---TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETT
T ss_pred             eEEEEcCCCCc-eEEEEe-C---CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCC
Confidence            99999987432 222211 1   122578999999777777664 34 7888888774332222221 12 889999987


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +..++++-...+.|..+|+.. ......+.........+++ ..+ .++++-...+.|..++...
T Consensus       214 ~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          214 GRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEE-ECC-EEEEecCCCCeEEEEEccC
Confidence            775777767778999999874 3222223333445677777 344 6666766778888887544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.83  E-value=4.8e-06  Score=71.75  Aligned_cols=231  Identities=9%  Similarity=-0.010  Sum_probs=137.0

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      .+.+..+ ...|+.+     ....|+..++.         .... ..+......+..++|.+.+..++++-...+.|..+
T Consensus        80 ~C~~~~~-~~~l~~~-----~~~~I~~i~~~---------~~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~  143 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-----NRIDIRQVLPH---------RSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRA  143 (386)
T ss_dssp             CEEECSS-CCEEEEE-----CBSCEEEECTT---------SCCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eECCccc-cceeEee-----cCccceeeccC---------CCcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEE
Confidence            3444444 3455543     34567777765         2122 22223334578999998777545554667899999


Q ss_pred             EcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEE
Q 018697          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLV  225 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~  225 (351)
                      +++... ...+....    ......+++.+.+..|+.+ ...+.|.+.++........+... . ...++++|.+.++++
T Consensus       144 ~~~g~~-~~~~~~~~----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          144 NLNGSN-VEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             ETTSCC-EEEEECSS----CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             ecCCCC-cEEEEeCC----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence            987532 11221111    1245778888766666655 45678888888754332222222 2 889999998775666


Q ss_pred             EecCC-CeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccc
Q 018697          226 TAADE-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRA  303 (351)
Q Consensus       226 ~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                      +-... +.|..+++.. . ....+ ...-...+.|+++|++..++++-+..+.|..+|+..                   
T Consensus       219 td~~~~~~I~r~~~dG-~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-------------------  277 (386)
T 3v65_B          219 TDWGNTPRIEASSMDG-S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-------------------  277 (386)
T ss_dssp             EECSSSCEEEEEETTS-C-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-------------------
T ss_pred             eccCCCCEEEEEeCCC-C-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-------------------
Confidence            65555 7899988874 2 23333 233455789999987745666666678899998764                   


Q ss_pred             cccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      ......+........++++. .+. ++.+....+.|..++
T Consensus       278 ~~~~~~~~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~  315 (386)
T 3v65_B          278 SHRKAVISQGLPHPFAITVF-EDS-LYWTDWHTKSINSAN  315 (386)
T ss_dssp             CSCEEEECSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEE
T ss_pred             CeeEEEEECCCCCceEEEEE-CCE-EEEeeCCCCeEEEEE
Confidence            11111122122335667773 333 666666677777776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.82  E-value=5.3e-06  Score=71.49  Aligned_cols=200  Identities=10%  Similarity=-0.053  Sum_probs=126.2

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      ...+..++|.+.+..|+.+   ....+.|..+++.         .......+.........+++.+.+..++++-...+.
T Consensus       115 ~~~~~gl~~d~~~~~ly~~---D~~~~~I~r~~~~---------g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~  182 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWS---DVTLDRILRANLN---------GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR  182 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEE---ETTTTEEEEEETT---------SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred             CCccEEEEEecCCCeEEEE---eCCCCcEEEEecC---------CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence            4567899999877777765   3566788888876         222222222223345678888876654555566778


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cC-CeEEEEEcccCCcCceeecc-e-eEEEEcCCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE-SSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKK  220 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~  220 (351)
                      |.+.+++...  ...+...   ......+++++|.+..|+.+. .. +.|..+++............ . ...++++|++
T Consensus       183 I~~~~~dg~~--~~~l~~~---~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~  257 (386)
T 3v65_B          183 IEVANLDGAH--RKVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  257 (386)
T ss_dssp             EEECBTTSCS--CEEEECS---SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG
T ss_pred             EEEEeCCCCc--eEEeecC---CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC
Confidence            8888887422  2222111   123578899999887777665 33 68888887643322222211 2 8899999877


Q ss_pred             CcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..++++-...+.|..+|+.. ......+.........|++ ..+ .++.+....+.|..++...
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCC
Confidence            75777777788999999874 3222223333445677887 344 6677777788888888544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.81  E-value=7.7e-08  Score=80.99  Aligned_cols=165  Identities=4%  Similarity=-0.108  Sum_probs=100.8

Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      +.++.|..|| .         +++.......+...+.++...+++.  +.+++.+  |..+|. ++..........    
T Consensus        37 t~~~~l~~~d-~---------~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~~~~~----   97 (330)
T 3hxj_A           37 SSNKNLYAIN-T---------DGSVKWFFKSGEIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRFDTKK----   97 (330)
T ss_dssp             STTTTTEEEC-T---------TSCEEESSCGGGEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGSCC------
T ss_pred             cCCCEEEEEC-C---------CCcEEEEEecCCCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEEECCC----
Confidence            4677888888 5         3444444444444566777777776  5555433  877875 333222211111    


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                       .........  +..+.+++.++.|..+|.. ++.........  +.++...+++.  +..++.++.|..+|..  ++.+
T Consensus        98 -~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~--g~~~  169 (330)
T 3hxj_A           98 -AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD--GTEK  169 (330)
T ss_dssp             ----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT--SCEE
T ss_pred             -CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC--CCEe
Confidence             112222233  4567788888999999988 66655554333  66677777775  5557788999999987  4455


Q ss_pred             eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+......+.++...+++ .+++. +  +.|..+| ..
T Consensus       170 ~~~~~~~~~~~~~~~d~~g-~l~v~-t--~~l~~~d-~~  203 (330)
T 3hxj_A          170 WRFKTNDAITSAASIGKDG-TIYFG-S--DKVYAIN-PD  203 (330)
T ss_dssp             EEEECSSCCCSCCEECTTC-CEEEE-S--SSEEEEC-TT
T ss_pred             EEEecCCCceeeeEEcCCC-EEEEE-e--CEEEEEC-CC
Confidence            5555555667778887777 54443 3  7788888 44

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.78  E-value=2e-06  Score=80.83  Aligned_cols=193  Identities=10%  Similarity=-0.001  Sum_probs=112.8

Q ss_pred             ceeEEEec-CCCCCcEEEEecCC----cEEEEEcCCC-CCCcccccccccCcccceeeeEECCCCCcEEEeecC-----C
Q 018697          122 KINCVLWW-SSGRHDKLVSIDEE----NIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----S  190 (351)
Q Consensus       122 ~v~~~~~~-~~~~~~~~~~~~d~----~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~  190 (351)
                      .+...+|| |||+.++++...+|    +|+++|+.++ ......+       .....+++|+||++.|+....+     .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-------~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-------SGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-------EEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-------cCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            67889999 99996444444333    4999999976 4221111       1134578999999988877654     3


Q ss_pred             eEEEEEcccCCcC--ceeecc--e-eEEEEcCCCCCcEEEEecC--CCeEEEEecccCCcce--eEee-CCCCceeEEEe
Q 018697          191 SVQFWDLRSMGKT--NSIEHA--H-VRNVDYDTKKKHLLVTAAD--ESGIHLWDLRMLKAPI--QELP-GHTHWTWAVCC  260 (351)
Q Consensus       191 ~i~iwd~~~~~~~--~~~~~~--~-v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~--~~~~-~~~~~v~~~~~  260 (351)
                      .|+++++.+++..  ..+...  . ...+.|+|+|++++++...  ...|+++|+.......  ..+. ........+.|
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM  327 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence            6888888776432  222212  2 6688999999965555433  3468888887632122  3333 23345555655


Q ss_pred             cCCCCCeEEEeeCC--C--eEEEEEcCCCCCCCCCCcccccCCccccccccee-eccccc--eEEEEEeCCCCCceEEEe
Q 018697          261 NPEYDGFILSAGTD--S--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYED--SVYGLAWSSREPWIFASL  333 (351)
Q Consensus       261 ~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~s~  333 (351)
                      +..+ .+++....+  +  .|..+|+..                   ...... +..+..  .+..+.+.  +..++++.
T Consensus       328 ~~g~-~l~~~t~~~~a~~~~L~~~d~~~-------------------~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~  385 (751)
T 2xe4_A          328 HGTS-HLVILTNEGGAVNHKLLIAPRGQ-------------------PSDWSHVLVDHSEDVFMESIAVR--SNYLVVAG  385 (751)
T ss_dssp             ETTT-EEEEEECTTTCTTCEEEEEETTS-------------------TTCCCCEEECCCSSEEEEEEEEC--SSEEEEEE
T ss_pred             eeCC-EEEEEeCCCCCCCcEEEEEcCCC-------------------cccceeeEECCCCCcEEEEEEEE--CCEEEEEE
Confidence            4443 555555544  3  455556543                   111111 212222  45566665  44477888


Q ss_pred             eeCCeEEEee
Q 018697          334 SYDGRVVVES  343 (351)
Q Consensus       334 ~~dg~v~vw~  343 (351)
                      ..++..++|-
T Consensus       386 ~~~g~~~l~~  395 (751)
T 2xe4_A          386 RRAGLTRIWT  395 (751)
T ss_dssp             EETTEEEEEE
T ss_pred             EeCCEEEEEE
Confidence            8888755553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=5.2e-06  Score=72.54  Aligned_cols=254  Identities=9%  Similarity=0.063  Sum_probs=135.7

Q ss_pred             ceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--
Q 018697           67 EIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--  143 (351)
Q Consensus        67 ~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--  143 (351)
                      ....++++| ++..|+++-    ..+.|+.+++.         ... +..+.........++|+++++.++++...++  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d----~~~~I~~id~~---------~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~  203 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVG----EQHPTRLIDFE---------KEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNND  203 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEE----BTEEEEEEETT---------TTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTT
T ss_pred             CCCEEEECCCCCCeEEEEe----CCCcEEEEECC---------CCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcc
Confidence            446788888 456666652    22788888876         222 3333334556889999999986455544222  


Q ss_pred             --cEEEEEcCCCCCC-cccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeec--ce-eEEEEc
Q 018697          144 --NIFLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEH--AH-VRNVDY  216 (351)
Q Consensus       144 --~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~--~~-v~~~~~  216 (351)
                        .+.+++... ... ...+. .    .....+++++|++..|+++ ..++.|..+|...+........  .. ...++|
T Consensus       204 ~~~v~~~~~~g-~~~~~~~l~-~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          204 RPNNYILTRES-GFKVITELT-K----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             SEEEEEEEGGG-TSCSEEEEE-E----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             cceEEEEeCCC-ceeeeeeec-c----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence              234444332 211 11111 1    1246788999944445544 4678999999886543222221  12 789999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeCC---------------CCcee-EEEec--------CCCCCeEE
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGH---------------THWTW-AVCCN--------PEYDGFIL  269 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~v~-~~~~~--------~~~~~~l~  269 (351)
                      +|++++++++-...+.|..++.......   ...+.+.               -.... .++..        +++ .+++
T Consensus       278 ~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyv  356 (430)
T 3tc9_A          278 HPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYF  356 (430)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEE
Confidence            9999866676677889999887632111   1222211               01112 34442        335 5555


Q ss_pred             EeeCCCeEEEEEcCCCCCCCCCCccc-ccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          270 SAGTDSTVNLWLVSTSNHDELPSESL-VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       270 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +-...+.|+.++..- .- ....... ........+...  ....-.....|+++|++..++++-.....|+.++++
T Consensus       357 aD~~n~~I~~i~~~G-~v-~~~~g~g~~~~~G~~dG~~~--~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          357 CDRENHCIRILTPQG-RV-TTFAGRGSNGTSGYNDGDLR--QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEGGGTEEEEECTTS-EE-EEEEECCTTSSSSCBCEETT--TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCcEEEEECCCC-cE-EEEEeCCCCCCCcccCCCch--hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            555667788877321 00 0000000 000000000000  000012468999999533377777778889988865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.75  E-value=9.1e-06  Score=69.74  Aligned_cols=223  Identities=11%  Similarity=-0.043  Sum_probs=127.7

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~  156 (351)
                      +..++++    +.++.|..+|..         +++.+-.............. .++.  +++++.++.|..+|..+++..
T Consensus       103 ~~~v~v~----~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~p~~-~~~~--v~v~~~~g~l~~~d~~tG~~~  166 (376)
T 3q7m_A          103 GGHVYIG----SEKAQVYALNTS---------DGTVAWQTKVAGEALSRPVV-SDGL--VLIHTSNGQLQALNEADGAVK  166 (376)
T ss_dssp             TTEEEEE----ETTSEEEEEETT---------TCCEEEEEECSSCCCSCCEE-ETTE--EEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCEEEEEeCCCceEcCCEE-ECCE--EEEEcCCCeEEEEECCCCcEE
Confidence            4456554    467889999987         44544444332221111112 2333  667777899999999877654


Q ss_pred             cccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCC--CCCcEEE
Q 018697          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLLV  225 (351)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l~  225 (351)
                      .....................  +..+++++.++.+..+|..+++.........         +..+.-.|  .+. .++
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~  243 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVF  243 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEE
T ss_pred             EEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEE
Confidence            443321100000000111222  4567888889999999999988776655321         00011112  133 567


Q ss_pred             EecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccc
Q 018697          226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS  305 (351)
Q Consensus       226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  305 (351)
                      .++.++.+..+|.++ ++.+....  ......+...  + ..++.++.++.|..+|..+                   ++
T Consensus       244 ~~~~~g~l~~~d~~t-G~~~w~~~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~t-------------------G~  298 (376)
T 3q7m_A          244 ALAYNGNLTALDLRS-GQIMWKRE--LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDG-------------------GV  298 (376)
T ss_dssp             EECTTSCEEEEETTT-CCEEEEEC--CCCEEEEEEE--T-TEEEEEETTCCEEEEETTT-------------------CC
T ss_pred             EEecCcEEEEEECCC-CcEEeecc--CCCCCCceEE--C-CEEEEEcCCCeEEEEECCC-------------------Cc
Confidence            778899999999987 55554443  2233444443  4 5677778899999999988                   55


Q ss_pred             cceeecc-ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          306 LLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       306 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .+..... ....+......  +. .|+.++.+|.|.++|..+
T Consensus       299 ~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTT
T ss_pred             EEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCC
Confidence            5544431 11112222222  33 577777888899988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.73  E-value=2.6e-05  Score=62.38  Aligned_cols=205  Identities=12%  Similarity=0.117  Sum_probs=130.8

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-cccceeEEEecCCCCCcEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~  138 (351)
                      .+.+-.+.+..++|+|++..|+++.   ..++.|...|..          ++.+..+.. -....-.|++.+++. ++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~---d~~~~I~~ld~~----------g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs   86 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTI---NKPAAIVEMTTN----------GDLIRTIPLDFVKDLETIEYIGDNQ-FVIS   86 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEE---ETTEEEEEEETT----------CCEEEEEECSSCSSEEEEEECSTTE-EEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEE---CCCCeEEEEeCC----------CCEEEEEecCCCCChHHeEEeCCCE-EEEE
Confidence            4556667899999999988888873   456677666654          344444421 124577888888887 2444


Q ss_pred             EecCCcEEEEEcCCCCCCcccccc--c--ccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc---CCcCceeec---
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSK--Q--SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIEH---  208 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~--~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~---  208 (351)
                      .-.++.+.++++............  .  .........+++|+|.++.|+++.......+|.+..   ...+..+..   
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence            445688999988764431111111  0  112234578999999998888887655555555541   111221211   


Q ss_pred             ---c---eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC---------CceeEEEecCCCCCeEEEeeC
Q 018697          209 ---A---HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       209 ---~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~  273 (351)
                         .   .+..++++|....+++....+..+..+|..  ++++..+.-..         ...-.|+|.++| +++++ ++
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE  242 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SE  242 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ET
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cC
Confidence               0   178999999888788888899999999977  44555544221         256889999999 65554 66


Q ss_pred             CCeEEEEEc
Q 018697          274 DSTVNLWLV  282 (351)
Q Consensus       274 dg~i~iwd~  282 (351)
                      -+.++.|.-
T Consensus       243 ~n~~y~f~~  251 (255)
T 3qqz_A          243 PNRFYRFTP  251 (255)
T ss_dssp             TTEEEEEEC
T ss_pred             CceEEEEEe
Confidence            566555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.73  E-value=3.1e-05  Score=64.70  Aligned_cols=221  Identities=11%  Similarity=0.040  Sum_probs=130.6

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCC---CCCccccccccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS---NKNAQVQSKQSS  165 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~  165 (351)
                      ....|+..++.         .......+ .....+..++|.+.+..++++-...+.|..+++...   .....+...   
T Consensus         8 ~~~~I~~i~~~---------~~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~---   74 (316)
T 1ijq_A            8 NRHEVRKMTLD---------RSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---   74 (316)
T ss_dssp             CBSSEEEEETT---------SCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---
T ss_pred             CCCeEEEEECC---------CcceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---
Confidence            44568888877         22222222 234567899999987765555566789999998751   111111111   


Q ss_pred             CcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEecCC-CeEEEEecccC
Q 018697          166 GMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRML  241 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  241 (351)
                       ......++++.+.+..|+.+ ...+.|.+.|+........+... . ...++++|.+.+++++.... +.|..+++.. 
T Consensus        75 -~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-  152 (316)
T 1ijq_A           75 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  152 (316)
T ss_dssp             -SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             -CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-
Confidence             11246788888766666655 56789999998754332222211 2 88999999776566655443 7888888763 


Q ss_pred             CcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          242 KAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       242 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                       .....+. ..-...+.++++|++..++++-+..+.|..+|+....                 .+.+...........++
T Consensus       153 -~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----------------~~~~~~~~~~~~~P~gi  214 (316)
T 1ijq_A          153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------------RKTILEDEKRLAHPFSL  214 (316)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------CEEEEECTTTTSSEEEE
T ss_pred             -CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----------------eEEEeecCCccCCcEEE
Confidence             3333332 2345678999998874555666667899999986410                 11111111111234567


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeec
Q 018697          321 AWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ++.. +. ++++-...+.|..++.
T Consensus       215 av~~-~~-ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          215 AVFE-DK-VFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEET-TE-EEEEETTTTEEEEEET
T ss_pred             EEEC-CE-EEEEECCCCeEEEEeC
Confidence            7743 33 6666666777777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.69  E-value=6.5e-05  Score=62.74  Aligned_cols=222  Identities=9%  Similarity=-0.048  Sum_probs=134.5

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+.|+.+++....-.    .+......+..++|.+.+..|+.+   ....+.|..+++.....    . ......+...-
T Consensus         9 ~~~I~~i~~~~~~~~----~~~~~~~~p~g~~~d~~~~~ly~~---D~~~~~I~~~~~~g~~~----~-~~~~~~~~~~~   76 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG----V-SSYDTVISRDI   76 (316)
T ss_dssp             BSSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSC
T ss_pred             CCeEEEEECCCcceE----ehhcCCCceEEEEEEeCCCEEEEE---ECCCCcEEEEECCCCCC----C-cccEEEEeCCC
Confidence            356777776654321    122334567899999987777776   35667888888762000    0 11111222222


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC--CeEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--SSVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~  198 (351)
                      .....+++.+.+..++++-...+.|.+.+++.. ....+.. .   ......+++++|.+..|+.+...  +.|...++.
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~-~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEE-C---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEE-C---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            456788888766654555466789999998742 2222221 1   12257899999977777766532  688888876


Q ss_pred             cCCcCceeecc--e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-C--CCCceeEEEecCCCCCeEEEee
Q 018697          199 SMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-G--HTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       199 ~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      . .....+...  . ...++++|++..++++-...+.|..+|+.. . ....+. .  .......+++. .+ .++++-.
T Consensus       152 G-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~  226 (316)
T 1ijq_A          152 G-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDI  226 (316)
T ss_dssp             S-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEET
T ss_pred             C-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-C-ceEEEeecCCccCCcEEEEEE-CC-EEEEEEC
Confidence            4 333333211  2 889999988775667666778999999874 2 233332 1  22345677775 34 6777777


Q ss_pred             CCCeEEEEEcCC
Q 018697          273 TDSTVNLWLVST  284 (351)
Q Consensus       273 ~dg~i~iwd~~~  284 (351)
                      ..+.|..++..+
T Consensus       227 ~~~~V~~~~~~~  238 (316)
T 1ijq_A          227 INEAIFSANRLT  238 (316)
T ss_dssp             TTTEEEEEETTT
T ss_pred             CCCeEEEEeCCC
Confidence            788899888755

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.69  E-value=2.3e-05  Score=68.51  Aligned_cols=253  Identities=11%  Similarity=0.027  Sum_probs=139.1

Q ss_pred             ceeeeeeCCC--CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC--
Q 018697           67 EIWDLSSCPF--DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--  142 (351)
Q Consensus        67 ~v~~i~~~~~--~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d--  142 (351)
                      ....++|.|+  +..|+.+    ...+.|+.++..         ... +..+.........+++++++. ++++....  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~----D~~~~I~~id~~---------~g~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~  204 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV----GQRDAFRHVDFV---------NQY-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSD  204 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE----CBTSCEEEEETT---------TTE-EEEECCCCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred             CCceEEEccccCCCEEEEE----eCCCCEEEEECC---------CCE-EEEeecCCCCccEEEECCCCC-EEEEcCCCCc
Confidence            4568889984  4556654    222788888875         223 333333445688999999999 45554321  


Q ss_pred             -C-cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCcee-ecce---eEEEE
Q 018697          143 -E-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSI-EHAH---VRNVD  215 (351)
Q Consensus       143 -~-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~-~~~~---v~~~~  215 (351)
                       . .+...+............     .......++++|++..|+++ ..++.|+.+|..++.....+ ....   ...++
T Consensus       205 ~~~gv~~~~~~~~~~~~~~~~-----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia  279 (433)
T 4hw6_A          205 TNTGIYLFTRASGFTERLSLC-----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIV  279 (433)
T ss_dssp             TSEEEEEECGGGTTCCEEEEE-----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEE
T ss_pred             ccceEEEEECCCCeecccccc-----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEE
Confidence             1 233333321111001111     11246778999944445554 46788999998866542222 2111   45799


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcc---eeEeeCC---------------CCceeEEEe---------cCCCCCeE
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPGH---------------THWTWAVCC---------NPEYDGFI  268 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~v~~~~~---------~~~~~~~l  268 (351)
                      |+|+++.++++-...+.|+.+++......   ...+.+.               -.....+++         .+++ .++
T Consensus       280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~ly  358 (433)
T 4hw6_A          280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFY  358 (433)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEE
Confidence            99999856666677889999886531111   1122211               123567888         6777 777


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCccccc-CCcccccccceeeccccceEEEEEeC-CCCCceEEEeeeCCeEEEeecC
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVE-SPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++-...+.|+.++..- .. ....+.... .+-...+...  ....-....+|+++ +++. ++++-...+.|+..+++
T Consensus       359 vaD~~n~~I~~~~~~G-~v-~t~~G~g~~~~~G~~dG~~~--~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPEG-RV-TTYAGRGNSREWGYVDGELR--SQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEECTTS-EE-EEEECCCTTCSSCCBCEETT--TTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEECCCC-CE-EEEEeCCCCCccccCCCccc--cccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence            7777778898887421 00 000000000 0000000000  00011236789999 5665 77777778899988875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=2.2e-05  Score=62.82  Aligned_cols=201  Identities=7%  Similarity=0.048  Sum_probs=123.0

Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF  194 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  194 (351)
                      .+.+-...+..++|+|++..++++...++.|...|.. +.....+...   + .....++++.+++.++++.-.++.+.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---g-~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---F-VKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---S-CSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---C-CCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            3445556799999999887655556667888888887 3322222111   1 135778888888876565556788888


Q ss_pred             EEcccCCcC---ceeec-----c-e--eEEEEcCCCCCcEEEEecCCCeEEEEeccc--CCcceeEee-------CCCCc
Q 018697          195 WDLRSMGKT---NSIEH-----A-H--VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELP-------GHTHW  254 (351)
Q Consensus       195 wd~~~~~~~---~~~~~-----~-~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-------~~~~~  254 (351)
                      +++.....+   .....     . .  ...++|+|.+.. |+++.+.....+|.++.  ....+..+.       .+...
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            887654321   11110     1 1  789999999873 44455444445555431  111222221       12345


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee--c-cc------cceEEEEEeCCC
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY--S-DY------EDSVYGLAWSSR  325 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~------~~~v~~~~~~~~  325 (351)
                      +..++++|...++++.......|..+|...                    +.+..+  . +.      -....+|+|.++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--------------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVG--------------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTC--------------------CEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCC--------------------CEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence            789999998767777777788899999774                    333222  2 11      124578999999


Q ss_pred             CCceEEEeeeCCeEEEee
Q 018697          326 EPWIFASLSYDGRVVVES  343 (351)
Q Consensus       326 ~~~~l~s~~~dg~v~vw~  343 (351)
                      |. ++++ ++-+.++.+.
T Consensus       235 G~-lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          235 GN-IYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CC-EEEE-ETTTEEEEEE
T ss_pred             CC-EEEE-cCCceEEEEE
Confidence            98 4544 6666555554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.67  E-value=5.9e-05  Score=65.22  Aligned_cols=223  Identities=8%  Similarity=-0.044  Sum_probs=135.1

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+.|+.+++......    .+......+..++|.+.+..|+.+   ....+.|..+++.....     .......+....
T Consensus        91 ~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~lyws---D~~~~~I~~~~~~g~~~-----~~~~~~~~~~~~  158 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDI  158 (400)
T ss_dssp             TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC-----------CCCEEEECSSC
T ss_pred             cceeEEEccCCccee----EeccccCcceEEeeeeccCceEEE---ecCCCeEEEEEcccCCC-----CCcceEEEeCCC
Confidence            466766666543322    223345678899999987777765   35567888888762000     011222222234


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec--CCeEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~  198 (351)
                      .....+++.+.+..++++-...+.|.+.+++...  ...+...   ......+++++|.+..|+.+..  .+.|...++.
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEEC---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeC---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            4677888988666545555667899999987432  2222111   1225789999998777776652  4788888887


Q ss_pred             cCCcCceeecc-e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eC--CCCceeEEEecCCCCCeEEEeeC
Q 018697          199 SMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PG--HTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       199 ~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      .......+... . ...|++++++..++++-...+.|..+|+.. .. ...+ ..  .......+++. .+ .++.+...
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~-~~~~~~~~~~l~~P~gl~v~-~~-~lywtd~~  309 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLAHPFSLAVF-ED-KVFWTDII  309 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CC-CEEEEECSSTTSSEEEEEEE-TT-EEEEEESS
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-Cc-cEEEEeCCCCCCCCEEEEEe-CC-EEEEecCC
Confidence            44332222212 2 899999988775666666778999999874 32 2222 22  22344567663 23 56667777


Q ss_pred             CCeEEEEEcCC
Q 018697          274 DSTVNLWLVST  284 (351)
Q Consensus       274 dg~i~iwd~~~  284 (351)
                      .+.|..+|..+
T Consensus       310 ~~~V~~~~~~~  320 (400)
T 3p5b_L          310 NEAIFSANRLT  320 (400)
T ss_dssp             SCSEEEEESSS
T ss_pred             CCeEEEEEcCC
Confidence            78888888655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.66  E-value=3.2e-05  Score=64.63  Aligned_cols=221  Identities=8%  Similarity=-0.031  Sum_probs=129.7

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ....|+..++...       .......+ .....+..++|.+.+..++.+-...+.|..++++.......+....    .
T Consensus        11 ~~~~I~~i~l~~~-------~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l   78 (318)
T 3sov_A           11 NRRDLRLVDATNG-------KENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----L   78 (318)
T ss_dssp             CEEEEEEEETTCT-------TSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----C
T ss_pred             ccCeEEEEECCCC-------ceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----C
Confidence            4567888888721       10111111 2223567899999766545554667899999987543222222111    1


Q ss_pred             cceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEec-CCCeEEEEecccCCcc
Q 018697          169 HYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKAP  244 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  244 (351)
                      ....++++.+.+..|+.+ ...+.|.++++........+... . ...++++|.+.+++++-. ..+.|..+++.-  ..
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--~~  156 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SS  156 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS--CS
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC--CC
Confidence            256778888766666555 45789999998754322222112 1 889999987664555542 357888888763  22


Q ss_pred             eeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          245 IQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       245 ~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                      ...+ ...-...+.|+++|++..+.++-+..+.|..+|+..                   ...............++++.
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------------------~~~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------------------TNRQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------------------CSCEEEECSCCSCEEEEEEE
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------------------CceEEEecCCCCCceEEEEe
Confidence            3333 223345689999997745666666678999999864                   11111111122334566664


Q ss_pred             CCCCceEEEeeeCCeEEEeec
Q 018697          324 SREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      . + .++.+-...+.|..++.
T Consensus       218 ~-~-~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          218 E-D-ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             T-T-EEEEEETTTTEEEEEET
T ss_pred             C-C-EEEEEecCCCeEEEEEC
Confidence            3 2 35666656677777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.65  E-value=8.4e-05  Score=70.46  Aligned_cols=232  Identities=11%  Similarity=0.078  Sum_probs=142.8

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee--------ccccceeEEEecCCCCCcE
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--------AHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~  136 (351)
                      ...|.++...+++...+.+     .++-+.+|+..         ..+. ..+.        .....|.++...++|.  +
T Consensus       214 ~~~i~~i~~d~~g~lwigt-----~~~Gl~~~~~~---------~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~--l  276 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVAT-----EGAGLFLINPK---------TKEI-KNYLHSPSNPKSISSNYIRSLAMDSQNR--L  276 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEE-----BSSCEEEEETT---------TTEE-EEECCCTTCTTSCSCSBEEEEEECTTSC--E
T ss_pred             CCeeEEEEEcCCCCEEEEE-----CCCCeEEEeCC---------CCeE-EEeecCCCCccccCCCeEEEEEEcCCCC--E
Confidence            4567788777766655543     33347788865         2121 1121        1235699999988888  5


Q ss_pred             EEEecCCcEEEEEcCCCCCCccccccc---ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee------
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE------  207 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------  207 (351)
                      .++..+ -|.+|+..+.. ........   ..-....|.++...+++. |-+|+.++.|..|+..+.... .+.      
T Consensus       277 Wigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~  352 (795)
T 4a2l_A          277 WIGTFN-DLNIYHEGTDS-FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKN  352 (795)
T ss_dssp             EEEESS-CEEEEETTTTE-EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSS
T ss_pred             EEEeCC-hhheEcCCCCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCC
Confidence            555444 58889876432 11111100   011224789999988776 666777778889987655321 111      


Q ss_pred             --cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------CCCCceeEEEecCCCCCeEEEeeCCC
Q 018697          208 --HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------GHTHWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       208 --~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                        ... |.++...++|.  +-.|+.++-|..||..+ .+ ...+.         .....|.++...+++ .+|..|+.++
T Consensus       353 ~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~  427 (795)
T 4a2l_A          353 SLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAG  427 (795)
T ss_dssp             SCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTT-CC-EEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTT
T ss_pred             CCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcC
Confidence              012 99999999886  45578887899999775 32 33332         123568899888888 6466677777


Q ss_pred             eEEEEEcCCCCCCCCCCcccccCCcccccccceeec-----cccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-----DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      -|..||...                   ++. ..+.     .....|.++...++|. +.+.. .+ -|.+|+..
T Consensus       428 Gl~~~d~~~-------------------~~~-~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt-~~-Gl~~~~~~  479 (795)
T 4a2l_A          428 GLSILHRNS-------------------GQV-ENFNQRNSQLVNENVYAILPDGEGN-LWLGT-LS-ALVRFNPE  479 (795)
T ss_dssp             EEEEEETTT-------------------CCE-EEECTTTSCCSCSCEEEEEECSSSC-EEEEE-SS-CEEEEETT
T ss_pred             ceeEEeCCC-------------------CcE-EEeecCCCCcCCCeeEEEEECCCCC-EEEEe-cC-ceeEEeCC
Confidence            799999876                   221 1111     1234689999888887 55444 34 47777764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=4.1e-05  Score=67.26  Aligned_cols=256  Identities=10%  Similarity=0.036  Sum_probs=139.9

Q ss_pred             ceeeeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-c---cccceeEEEe-------cCCCCC
Q 018697           67 EIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-A---HVGKINCVLW-------WSSGRH  134 (351)
Q Consensus        67 ~v~~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~---h~~~v~~~~~-------~~~~~~  134 (351)
                      ....|+|.| ++..|+++.   ...+.|++.|+.         . ..+..+. .   .......++|       ++++..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~---~~~~~i~~ID~~---------~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~  206 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICY---DGHKAIQLIDLK---------N-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY  206 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEE---ETEEEEEEEETT---------T-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred             CCCEEEEccCCCCEEEEEE---CCCCeEEEEECC---------C-CEEEEEEccCccccCCCcEEEEeecccccCCCCCE
Confidence            356788998 466666653   234567777776         2 2233332 1   1235889999       999986


Q ss_pred             cEEEEecCC------cEEEEEcCCCCCCc-----ccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcc----
Q 018697          135 DKLVSIDEE------NIFLWSLDCSNKNA-----QVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR----  198 (351)
Q Consensus       135 ~~~~~~~d~------~v~iwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~----  198 (351)
                      ++++...++      .|.+++........     .... .    -.....++.+|++..|+++. .++.|..+|+.    
T Consensus       207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred             EEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence            455543332      36666644311221     1111 1    11456788999777766654 67889999998    


Q ss_pred             ---cCCc-----------Cce-eec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce---eEeeCC---C--
Q 018697          199 ---SMGK-----------TNS-IEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---QELPGH---T--  252 (351)
Q Consensus       199 ---~~~~-----------~~~-~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~---~--  252 (351)
                         ++..           ... +..  .. ...++|+|++..++++-.....|+.++.......+   ..+.+.   .  
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~  361 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGY  361 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCC
T ss_pred             cccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcc
Confidence               5543           011 111  12 78999999998556666677899997765312111   222221   0  


Q ss_pred             ----------Ccee-EEEec-------CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc------c-CCcccccccc
Q 018697          253 ----------HWTW-AVCCN-------PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV------E-SPNQRANSLL  307 (351)
Q Consensus       253 ----------~~v~-~~~~~-------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~-~~~~~~~~~~  307 (351)
                                .... .+...       +++ .++++-.....|+.++..- . -....+...      . .+-...+.+.
T Consensus       362 ~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G-~-v~TiaG~g~~~~~~~~~~~G~~dG~~~  438 (496)
T 3kya_A          362 RDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEG-I-VSTYAGRGASTSLADGNQWGTDDGDLR  438 (496)
T ss_dssp             BCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTC-B-EEEEEESCTTHHHHHSCSCCCCCEETT
T ss_pred             cCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCC-C-EEEEecccccccccCccccccCCCCch
Confidence                      1123 34443       455 6666666778898888321 0 000000000      0 0000000000


Q ss_pred             eeeccccceEEEEEeCCC-CCceEEEeeeCCeEEEeecCc
Q 018697          308 NSYSDYEDSVYGLAWSSR-EPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        ....-....+|+++++ +. ++++-.....||.++++.
T Consensus       439 --~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          439 --EVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             --TTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECC
T ss_pred             --hhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCC
Confidence              0011123678999997 66 777777888999998875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.63  E-value=5.8e-05  Score=63.02  Aligned_cols=222  Identities=10%  Similarity=-0.033  Sum_probs=135.4

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+.|+.+++........  ........+..++|.+.+..|+.+   ....+.|..+++..        .......+...-
T Consensus        12 ~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~lyw~---D~~~~~I~r~~~~g--------~~~~~~~~~~~l   78 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNK--------TESVQNVVVSGL   78 (318)
T ss_dssp             EEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTEEEEE---ETTTTEEEEEETTS--------SSCCCEEEEECC
T ss_pred             cCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCEEEEE---ECCCCcEEEEEccC--------CCceEEEEcCCC
Confidence            35677777765431111  111122356789999977777765   35667888888762        111111222222


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~  198 (351)
                      .....+++.+.+..++++-...+.|.+++++... ...+...    ......++++.|.+..|+.+.  ..+.|...++.
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~----~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQ----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeC----CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            3566788887666544554667899999987422 2222111    123578899998777777765  25788888876


Q ss_pred             cCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .. ....+....   .+.++++|++..++++-...+.|..+|+.. . ....+ .........+++.. + .++.+-...
T Consensus       154 G~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~-~~~~~~~~~~~~P~glav~~-~-~lywtd~~~  228 (318)
T 3sov_A          154 GS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-T-NRQAVVKGSLPHPFALTLFE-D-ILYWTDWST  228 (318)
T ss_dssp             SC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEECSCCSCEEEEEEET-T-EEEEEETTT
T ss_pred             CC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-C-ceEEEecCCCCCceEEEEeC-C-EEEEEecCC
Confidence            43 333332122   889999997775677667788999999874 2 22333 22334556777753 3 566666677


Q ss_pred             CeEEEEEcCCC
Q 018697          275 STVNLWLVSTS  285 (351)
Q Consensus       275 g~i~iwd~~~~  285 (351)
                      +.|..++..++
T Consensus       229 ~~V~~~~~~~G  239 (318)
T 3sov_A          229 HSILACNKYTG  239 (318)
T ss_dssp             TEEEEEETTTC
T ss_pred             CeEEEEECCCC
Confidence            88999988653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.55  E-value=6e-05  Score=65.18  Aligned_cols=180  Identities=12%  Similarity=0.036  Sum_probs=111.5

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCC---CCccccccccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN---KNAQVQSKQSS  165 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~  165 (351)
                      ....|+..++.         .... ..+......+..++|.+.+..++++-...+.|+.+++....   ....+...   
T Consensus        90 ~~~~I~~i~l~---------~~~~-~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---  156 (400)
T 3p5b_L           90 NRHEVRKMTLD---------RSEY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---  156 (400)
T ss_dssp             ETTEEEEECTT---------SCSC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---
T ss_pred             ccceeEEEccC---------Ccce-eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---
Confidence            34578887776         2122 22223456788999999777645555667889999887422   11111111   


Q ss_pred             CcccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEecC-CCeEEEEecccC
Q 018697          166 GMLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAAD-ESGIHLWDLRML  241 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  241 (351)
                       ......++++.+.+..|+.+ ...+.|.+.++........+... . +..++++|.+.+++++-.. .+.|...++.. 
T Consensus       157 -~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-  234 (400)
T 3p5b_L          157 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  234 (400)
T ss_dssp             -SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-
T ss_pred             -CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-
Confidence             12257788888766666655 45789999998755433333312 2 8899999977645555433 47898888874 


Q ss_pred             CcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          242 KAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       242 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      . ....+ ...-...+.|++++++..+.++-...+.|..+|+..
T Consensus       235 ~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          235 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             C-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             C-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            2 23333 333356789999988745555556677899999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.55  E-value=1.4e-05  Score=66.98  Aligned_cols=198  Identities=9%  Similarity=0.049  Sum_probs=115.6

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc---------------ccCcccceeeeEECCCCCcEEEe
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---------------SSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                      ...+++|.+++. +++++..++.|..|+..+.. ........               .......+.++++.+++..|+++
T Consensus        20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCCCEECCTTCS-SEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            456788999887 36666678899999877432 11111000               00011246889999744456666


Q ss_pred             ecCCeEEEEEcccCCcCceee---cc---e-eEEEEcCC-CCCcEEEEecC-----------------CCeEEEEecccC
Q 018697          187 TCESSVQFWDLRSMGKTNSIE---HA---H-VRNVDYDT-KKKHLLVTAAD-----------------ESGIHLWDLRML  241 (351)
Q Consensus       187 ~~d~~i~iwd~~~~~~~~~~~---~~---~-v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~d~~~~  241 (351)
                      ...+.|..+|..++.. ..+.   .+   . +..+++.+ +|. ++++...                 ++.|..||... 
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-  174 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-  174 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCC-
Confidence            5556688888775432 1111   11   1 78899999 897 5554322                 36788888764 


Q ss_pred             CcceeEeeCCCCceeEEEecCCCCCe-EEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          242 KAPIQELPGHTHWTWAVCCNPEYDGF-ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      ++ +..+.........++++|++ .. +++-...+.|..|++......              ..+.+..+   .. ...+
T Consensus       175 ~~-~~~~~~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--------------~~~~~~~~---~g-P~gi  234 (322)
T 2fp8_A          175 KE-TTLLLKELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--------------TAEVLVKI---PN-PGNI  234 (322)
T ss_dssp             TE-EEEEEEEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--------------CEEEEEEC---SS-EEEE
T ss_pred             CE-EEEeccCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--------------ccceEEeC---CC-CCCe
Confidence            32 22222122345679999999 64 455566789999998741000              01111111   22 6788


Q ss_pred             EeCCCCCceEEEeee----------CCeEEEeecC
Q 018697          321 AWSSREPWIFASLSY----------DGRVVVESVK  345 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~----------dg~v~vw~~~  345 (351)
                      ++.++|. ++++...          .+.|..++..
T Consensus       235 ~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          235 KRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             EECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             EECCCCC-EEEEecCcccccccCCCccEEEEECCC
Confidence            9999998 6666544          3556666643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.54  E-value=2.9e-05  Score=64.58  Aligned_cols=206  Identities=9%  Similarity=-0.014  Sum_probs=118.0

Q ss_pred             ceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC
Q 018697          110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE  189 (351)
Q Consensus       110 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  189 (351)
                      .+.+..+... .....++|.+++. ++++...++.|..||....  ......  .   .....++++.++++.+++....
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~--~~~~~~--~---~~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN--QQIHAT--V---EGKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC--EEEEEE--C---SSEEEEEEECTTSCEEEEEECT
T ss_pred             ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc--eEEEEe--C---CCCceeEEEcCCCcEEEEeccC
Confidence            3444455332 4567899999887 3444456789999987642  211111  1   1268889999999855544332


Q ss_pred             --CeEEEEEcccCCcCceeec--ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-------e--CCCCce
Q 018697          190 --SSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-------P--GHTHWT  255 (351)
Q Consensus       190 --~~i~iwd~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~--~~~~~v  255 (351)
                        ..|..+|..+++.......  .. ...++..+.+. ++++...++.|+++|.......+...       .  ......
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence              2476777776654322221  11 44555555554 56655568899999976411011100       0  111234


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeee
Q 018697          256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY  335 (351)
Q Consensus       256 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  335 (351)
                      +.+  +|++..++++-...+.|..|++.....                ......+.. ......++++++|. ++++...
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~----------------~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~  231 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK----------------PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHI  231 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTTSC----------------BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBT
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC----------------CCccEEEec-cCCCCCeEECCCCC-EEEEeCC
Confidence            555  788734556666788999999864100                000111111 12356788999987 7777766


Q ss_pred             CCeEEEeecC
Q 018697          336 DGRVVVESVK  345 (351)
Q Consensus       336 dg~v~vw~~~  345 (351)
                      .+.|.+++..
T Consensus       232 ~~~V~~~~~~  241 (306)
T 2p4o_A          232 YNSVVRIAPD  241 (306)
T ss_dssp             TCCEEEECTT
T ss_pred             CCeEEEECCC
Confidence            7788888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.51  E-value=0.00048  Score=65.27  Aligned_cols=232  Identities=11%  Similarity=0.039  Sum_probs=142.8

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee--------ccccceeEEEecCCCCCcEE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--------AHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ..|.++...+++...+.+     .+ -|.+|+..         .... ..+.        .....|.++...++|.  +-
T Consensus       263 ~~i~~i~~d~~g~lWigt-----~~-Gl~~~~~~---------~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lW  324 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGT-----FN-DLNIYHEG---------TDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGG--MW  324 (795)
T ss_dssp             SBEEEEEECTTSCEEEEE-----SS-CEEEEETT---------TTEE-EEECCCTTSTTSCSSSCEEEEEECTTSC--EE
T ss_pred             CeEEEEEEcCCCCEEEEe-----CC-hhheEcCC---------CCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcC--EE
Confidence            568899888888766554     33 57788865         2221 1221        1235799999999888  66


Q ss_pred             EEecCCcEEEEEcCCCCCCccccccc--ccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--------
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQ--SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------  207 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------  207 (351)
                      +++.++-|..|+..+.. ........  ..-....|.++...+++. |.+|+.++.|..||..+++......        
T Consensus       325 igt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             EEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             EEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence            66666778888876422 11111100  001123688998888765 6667777789999987654322110        


Q ss_pred             c-ce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-----CCCCceeEEEecCCCCCeEEEeeCCCeEEEE
Q 018697          208 H-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (351)
Q Consensus       208 ~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  280 (351)
                      . .. |.++...+++. +|..|+.++-|.+||.++ ++ ...+.     .....|.++...++| .+.+. +.+ .|.+|
T Consensus       403 l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig-t~~-Gl~~~  476 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPDGEG-NLWLG-TLS-ALVRF  476 (795)
T ss_dssp             CSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEECSSS-CEEEE-ESS-CEEEE
T ss_pred             CCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEECCCC-CEEEE-ecC-ceeEE
Confidence            0 12 88998888886 466677777899999875 32 33333     134578999988887 54443 344 48889


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceee------ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSY------SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |...                   ++.....      ......|.++...++|. +.+... + -|..|+..
T Consensus       477 ~~~~-------------------~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~-Gl~~~~~~  525 (795)
T 4a2l_A          477 NPEQ-------------------RSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-E-GLSVFKQE  525 (795)
T ss_dssp             ETTT-------------------TEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-S-CEEEEEEE
T ss_pred             eCCC-------------------CeEEEccccccccccCCceEEEEEECCCCC-EEEEeC-C-ceEEEeCC
Confidence            8875                   2211111      11235688999999887 555443 4 46677653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=2.6e-05  Score=72.24  Aligned_cols=186  Identities=7%  Similarity=0.025  Sum_probs=108.5

Q ss_pred             EEEecCCCCCcEEEEecCC-------------------cEEEEEcCCCCCCcccccccccC----cccceeeeEECCCCC
Q 018697          125 CVLWWSSGRHDKLVSIDEE-------------------NIFLWSLDCSNKNAQVQSKQSSG----MLHYLSGGAWDPHDV  181 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~  181 (351)
                      .+++.|+... ++++..++                   .|..+|..+++............    ...+.....+..+++
T Consensus       234 ~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            4677777663 55554443                   48899998877655443321110    001222222222454


Q ss_pred             ---cEEEeecCCeEEEEEcccCCcCceeecce--------------------------------------eEEEEcCCCC
Q 018697          182 ---NAVAATCESSVQFWDLRSMGKTNSIEHAH--------------------------------------VRNVDYDTKK  220 (351)
Q Consensus       182 ---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------v~~~~~~~~~  220 (351)
                         .++.++.+|.++++|.++++.+.......                                      -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               57888899999999999998763222100                                      1125677776


Q ss_pred             CcEEEEe------------------------------------cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          221 KHLLVTA------------------------------------ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       221 ~~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                      . +++..                                    ..+|.|..||+.+ ++.+-+...+ .+.....+...+
T Consensus       393 g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 G-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAG  469 (668)
T ss_dssp             T-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETT
T ss_pred             C-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCC
Confidence            5 33321                                    1347899999987 6555555432 233333444456


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceE-EEEEeCCCCCceEEEee
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV-YGLAWSSREPWIFASLS  334 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~  334 (351)
                       .+++.++.|+.++.||.++                   ++.+..+....... .-+.+..+|+.+++.+.
T Consensus       470 -g~vf~g~~dg~l~a~d~~t-------------------G~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          470 -NLVFQGTAAGQMHAYSADK-------------------GEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             -TEEEEECTTSEEEEEETTT-------------------CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             -CEEEEECCcccchhhhhhc-------------------ChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence             7888899999999999998                   77777775432111 12334456664454443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.47  E-value=2.2e-05  Score=72.61  Aligned_cols=230  Identities=11%  Similarity=-0.021  Sum_probs=117.4

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe-cC---
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DE---  142 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~d---  142 (351)
                      ...++++.++++.++.+   |..+..+.+||...       ..+..+..+.... .-.+++..++++ +++.++ .+   
T Consensus       244 ~~~~~~~~~~g~lyv~G---G~~~~~v~~yd~~t-------~~W~~~~~~~~~R-~~~s~~~~~dg~-iyv~GG~~~~~~  311 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTG---GNDAKKTSLYDSSS-------DSWIPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWSGGV  311 (656)
T ss_dssp             SSCEEEECTTSCEEEEC---SSSTTCEEEEEGGG-------TEEEECCCCSSCC-SSCEEEECTTSC-EEEECCCCCSSS
T ss_pred             ccccccCCCCCCEEEeC---CCCCCceEEecCcC-------CceeECCCCCccc-cccceEEecCCe-EEEEeCcccCCc
Confidence            33456777878766663   33456899999872       1333333332211 113445566777 466665 33   


Q ss_pred             --CcEEEEEcCCCCCCccccc----ccccCcccceeeeEECCCCCcEEEeecC---------CeEEEEEcccCCcCceee
Q 018697          143 --ENIFLWSLDCSNKNAQVQS----KQSSGMLHYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIE  207 (351)
Q Consensus       143 --~~v~iwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~  207 (351)
                        ..+.+||..+..-  ....    .....   .-....+..++..++.++.+         ..+..||..+........
T Consensus       312 ~~~~~e~yd~~t~~W--~~~~~~~~~p~~~---~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~  386 (656)
T 1k3i_A          312 FEKNGEVYSPSSKTW--TSLPNAKVNPMLT---ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG  386 (656)
T ss_dssp             CCCCEEEEETTTTEE--EEETTSCSGGGCC---CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred             ccccceEeCCCCCcc--eeCCCcccccccc---ccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence              5689999986421  1110    00000   00011223345555555444         456788887654221111


Q ss_pred             ---c-------ce-eEEEEcCC-CCCcEEEEecCCC-----------eEEEEecccCCcceeEee---CCCCc-eeEEEe
Q 018697          208 ---H-------AH-VRNVDYDT-KKKHLLVTAADES-----------GIHLWDLRMLKAPIQELP---GHTHW-TWAVCC  260 (351)
Q Consensus       208 ---~-------~~-v~~~~~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~---~~~~~-v~~~~~  260 (351)
                         .       .. -.++.+.. +++ +++.|+.++           .|.+||..+ .. ...+.   .+... -.++..
T Consensus       387 ~~~~~~~~~~~~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~-~~-W~~~~~~~mp~~R~~~~~~~  463 (656)
T 1k3i_A          387 KRQSNRGVAPDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGT-SP-NTVFASNGLYFARTFHTSVV  463 (656)
T ss_dssp             ECEETTEECCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTS-CC-EEEECTTCCSSCCBSCEEEE
T ss_pred             ccccccccCCCCCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCC-CC-eeEEccCCCCCCcccCCeEE
Confidence               0       01 23444433 454 788887532           677888765 22 22221   11222 234456


Q ss_pred             cCCCCCeEEEeeCC-----------CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCce
Q 018697          261 NPEYDGFILSAGTD-----------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI  329 (351)
Q Consensus       261 ~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  329 (351)
                      .|++ .+++.|+.+           ..+.+||..+.                 .+..+..............+.|+++ +
T Consensus       464 l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-----------------~W~~~~~~~~~R~~hs~a~ll~dg~-v  524 (656)
T 1k3i_A          464 LPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD-----------------TFYKQNPNSIVRVYHSISLLLPDGR-V  524 (656)
T ss_dssp             CTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-----------------EEEECCCCSSCCCTTEEEEECTTSC-E
T ss_pred             CCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC-----------------ceeecCCCCCccccccHhhcCCCcE-E
Confidence            7888 888888864           46788988751                 1222222211111122344678888 8


Q ss_pred             EEEeee
Q 018697          330 FASLSY  335 (351)
Q Consensus       330 l~s~~~  335 (351)
                      ++.||.
T Consensus       525 ~v~GG~  530 (656)
T 1k3i_A          525 FNGGGG  530 (656)
T ss_dssp             EEEECC
T ss_pred             EecCCC
Confidence            888874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.44  E-value=0.0005  Score=58.26  Aligned_cols=237  Identities=8%  Similarity=0.012  Sum_probs=122.9

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee---ccccceeEEEecCC---CCCcEEE
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSS---GRHDKLV  138 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~~~~  138 (351)
                      -...+.++|.|+++.+++     ...+.|.+++ ..        ....+..+.   ........|+++|+   +..++++
T Consensus        30 l~~P~~ia~~pdG~l~V~-----e~~g~I~~i~-~g--------~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-----ERPGRIRLFR-EG--------RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-----ETTTEEEEEE-TT--------EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEcCCCeEEEE-----eCCCeEEEEE-CC--------CccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            345679999999985554     2458888887 31        222222221   22456789999998   5544444


Q ss_pred             EecC-----CcEEEEEcCCCCC--Ccccccccc--cCcccceeeeEECCCCCcEEEeec-------------CCeEEEEE
Q 018697          139 SIDE-----ENIFLWSLDCSNK--NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQFWD  196 (351)
Q Consensus       139 ~~~d-----~~v~iwd~~~~~~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd  196 (351)
                      ....     +.|..++......  ...+.....  .+.......++|.|++...++.+.             .+.|.-++
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~  175 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT  175 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence            4433     6788888764211  111111111  111124568999999965554332             15666666


Q ss_pred             cccC------------CcCceeecce--eEEEEcCC-CCCcEEEEecCCCe--------EEEEeccc-------------
Q 018697          197 LRSM------------GKTNSIEHAH--VRNVDYDT-KKKHLLVTAADESG--------IHLWDLRM-------------  240 (351)
Q Consensus       197 ~~~~------------~~~~~~~~~~--v~~~~~~~-~~~~~l~~~~~dg~--------i~i~d~~~-------------  240 (351)
                      ....            .....+..++  ...++|+| ++. ++++-.....        |.+.....             
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence            5431            1122223233  78899999 565 5554333222        43332111             


Q ss_pred             --CCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEE
Q 018697          241 --LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY  318 (351)
Q Consensus       241 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (351)
                        ...++..+. +......++| .+| .++++.-..+.|...++........            ... ...+-.....+.
T Consensus       255 ~~~~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~------------~~~-~~~~~~~~~rp~  318 (352)
T 2ism_A          255 PRYRDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWR------------VLR-VETALSGFGRLR  318 (352)
T ss_dssp             TTSCCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEE------------EEE-EEEEEESSCCEE
T ss_pred             CCCcCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCccee------------ecc-hheecccCCCee
Confidence              012333332 2234567777 456 6666666667777777654100000            000 111111224689


Q ss_pred             EEEeCCCCCceEEEe
Q 018697          319 GLAWSSREPWIFASL  333 (351)
Q Consensus       319 ~~~~~~~~~~~l~s~  333 (351)
                      .+++.|+|. ++++.
T Consensus       319 ~v~~~pdG~-lyv~~  332 (352)
T 2ism_A          319 EVQVGPDGA-LYVTT  332 (352)
T ss_dssp             EEEECTTSC-EEEEE
T ss_pred             EEEECCCCc-EEEEE
Confidence            999999998 55444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.43  E-value=0.00021  Score=67.04  Aligned_cols=223  Identities=8%  Similarity=-0.056  Sum_probs=131.7

Q ss_pred             CEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccc
Q 018697           42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG  121 (351)
Q Consensus        42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~  121 (351)
                      ..|+.+.+.....    ..+......+..|+|.+....|+.+   ....+.|+.+++.....     .......+.....
T Consensus       404 ~~Ir~i~l~~~~~----~~l~~~~~~~~gl~~d~~~~~lY~s---D~~~~~I~~~~l~g~~~-----~~~~~~vi~~~l~  471 (791)
T 3m0c_C          404 HEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQ  471 (791)
T ss_dssp             SSEEEECTTSCCC----EEEECSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSCS
T ss_pred             cceeEeeccCCcc----eeeecCCCceEEEeecccCCeeEEe---eccceeEEEEeccCCCC-----CcceeEEEecCCC
Confidence            4455555554322    1223345667789999877777765   35567888888762000     0112222332345


Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec--CCeEEEEEccc
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRS  199 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~  199 (351)
                      ....|++.+.+..++++-...+.|.+.+++...  ...+...   ......+|+++|....|+.+..  .+.|...++..
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            567899988887655555778899999987422  2222211   1225789999998777777652  36888888874


Q ss_pred             CCcCceeecc-e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--CCceeEEEecCCCCCeEEEeeCCC
Q 018697          200 MGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSAGTDS  275 (351)
Q Consensus       200 ~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg  275 (351)
                      ......+... . ...|++++.+..++++-.....|..+++.. ......+...  -.....|++.. + .++++-...+
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~-~-~lYwtD~~~~  623 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINE  623 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTT
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeC-C-EEEEEECCCC
Confidence            4332222212 2 889999987775666666678999999874 3222222221  22344666533 2 5666666677


Q ss_pred             eEEEEEcCC
Q 018697          276 TVNLWLVST  284 (351)
Q Consensus       276 ~i~iwd~~~  284 (351)
                      .|...|..+
T Consensus       624 ~I~~~dk~t  632 (791)
T 3m0c_C          624 AIFSANRLT  632 (791)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEeCCC
Confidence            888887655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.43  E-value=3e-06  Score=78.72  Aligned_cols=202  Identities=7%  Similarity=-0.071  Sum_probs=120.2

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      ...+..++|.+.+..|+.+   ....+.|+.+++.....     .......+...-.....|++.+.+..++++-...+.
T Consensus       405 ~~~p~gla~d~~~~~Ly~s---D~~~~~I~~~~~~g~~~-----~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~  476 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT  476 (699)
T ss_dssp             CTTCCCCEEETTTTEEEEC---CTTTTSBEEEESCCCCC------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred             CcceEEEccccccCeEEEE---ecCCCeEEEEecCCCCC-----CcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence            3466789999888777775   34567888888762000     011111111112235568888666654555466789


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec--CCeEEEEEcccCCcCceeecc--e-eEEEEcCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTK  219 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~--~-v~~~~~~~~  219 (351)
                      |.++++.... ...+....    ......++++|.+..|+.+..  .+.|..+++.... ...+...  . .+.|+|+|+
T Consensus       477 I~v~d~dg~~-~~~l~~~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~  550 (699)
T 1n7d_A          477 VSVADTKGVK-RKTLFREQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLL  550 (699)
T ss_dssp             EEEEBSSSCC-EEEECCCS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTT
T ss_pred             EEEEecCCCc-eEEEEeCC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEecc
Confidence            9999987432 12221111    125678899998777776653  3678887776432 2222211  2 788999998


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +..++++-...+.|..+++.. . ....+..   .......|++..+  .++++....+.|..++..+
T Consensus       551 ~~~LY~aD~~~~~I~~~d~dG-~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSSS-S-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred             CCEEEEEecCCCeEEEEccCC-C-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence            775777777788999999864 2 2233321   1123345555443  5666666778899998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.39  E-value=0.00018  Score=59.39  Aligned_cols=161  Identities=12%  Similarity=0.037  Sum_probs=104.2

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc--cCcccceeeeEE---CCCCCcEEEee-------
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS--SGMLHYLSGGAW---DPHDVNAVAAT-------  187 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~---~~~~~~l~~~~-------  187 (351)
                      ..-..+++|.+....++++.-..++|..|+...+...........  ......+.++.|   .|+++.+++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            334457889886664344445689999999874322211111100  111224689999   68866666433       


Q ss_pred             ------cCCeEEEEEcc---cCCcCceeec-----c---------e-eEEEEcCCCCCcEEEEecCC-CeEEEEecccCC
Q 018697          188 ------CESSVQFWDLR---SMGKTNSIEH-----A---------H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLK  242 (351)
Q Consensus       188 ------~d~~i~iwd~~---~~~~~~~~~~-----~---------~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  242 (351)
                            .+..|..||+.   +++.+.....     +         . ...++..++|+ ..++++.. +.|..++...  
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG--  168 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADG--  168 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTS--
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCC--
Confidence                  26789999999   7776654431     1         2 88999999998 78878877 8877777653  


Q ss_pred             cceeEee------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          243 APIQELP------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       243 ~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      +.+..+.      ......+.|+++|+| .+|+.....+.|..+|+..
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            2333322      112236799999999 6666665599999999884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.00031  Score=65.86  Aligned_cols=180  Identities=12%  Similarity=0.037  Sum_probs=110.0

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCC---Cccccccccc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK---NAQVQSKQSS  165 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~  165 (351)
                      ....|+..++.         ... ...+......+..|+|.+....++++-...+.|+.+++.....   ...+...   
T Consensus       402 n~~~Ir~i~l~---------~~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---  468 (791)
T 3m0c_C          402 NRHEVRKMTLD---------RSE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---  468 (791)
T ss_dssp             CBSSEEEECTT---------SCC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---
T ss_pred             cccceeEeecc---------CCc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---
Confidence            34567766665         112 2222234456788999987665455556678899998874211   1111111   


Q ss_pred             CcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEecCC-CeEEEEecccC
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRML  241 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  241 (351)
                       ......+|++.+.++.|+.+. ..+.|.+.++........+... . ...|+++|.+.+++++-..+ +.|.+.++.. 
T Consensus       469 -~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-  546 (791)
T 3m0c_C          469 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  546 (791)
T ss_dssp             -SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             -CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-
Confidence             123567889988777777664 6789999998754432222211 2 88999999866455554333 7899888874 


Q ss_pred             CcceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          242 KAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       242 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                       .....+ ...-...+.|++++.+..++++-.....|...++..
T Consensus       547 -~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          547 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence             333333 333357889999987735555555667888888864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.38  E-value=3.9e-05  Score=69.54  Aligned_cols=75  Identities=13%  Similarity=-0.028  Sum_probs=48.0

Q ss_pred             eEECCCCCcEEEeecC----------------CeEEEEEcccCCcCceeecc-----------eeEEEEcCCCCC--cEE
Q 018697          174 GAWDPHDVNAVAATCE----------------SSVQFWDLRSMGKTNSIEHA-----------HVRNVDYDTKKK--HLL  224 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~-----------~v~~~~~~~~~~--~~l  224 (351)
                      +++.++...++.+..+                +.|..+|.++++.+..++..           ...-+...++|+  .++
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            5666666667666532                36899999999887766532           111122223563  367


Q ss_pred             EEecCCCeEEEEecccCCcceeEee
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +.++.+|.++++|.++ ++.+..+.
T Consensus       320 ~~~~~~G~l~~lD~~t-G~~~w~~~  343 (571)
T 2ad6_A          320 SHIDRNGILYTLNREN-GNLIVAEK  343 (571)
T ss_dssp             EEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             EEeCCCcEEEEEECCC-CCEEeeec
Confidence            7788999999999887 55555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.37  E-value=2.3e-05  Score=72.58  Aligned_cols=152  Identities=10%  Similarity=0.000  Sum_probs=88.9

Q ss_pred             CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc----cceeEEEecCCCCCcEEEEec------CCcEE
Q 018697           77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV----GKINCVLWWSSGRHDKLVSID------EENIF  146 (351)
Q Consensus        77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~------d~~v~  146 (351)
                      +..+++.    +.|+.|..+|..         +++.+-.+....    ..+.+--.-.++.  ++++..      ++.|.
T Consensus       117 ~~~v~v~----~~dg~l~alD~~---------tG~~~W~~~~~~~~~~~~~~~~P~v~~~~--v~vg~~~~~~~~~g~v~  181 (668)
T 1kv9_A          117 GDKVYVG----TLDGRLIALDAK---------TGKAIWSQQTTDPAKPYSITGAPRVVKGK--VIIGNGGAEYGVRGFVS  181 (668)
T ss_dssp             BTEEEEE----CTTSEEEEEETT---------TCCEEEEEECSCTTSSCBCCSCCEEETTE--EEECCBCTTTCCBCEEE
T ss_pred             CCEEEEE----cCCCEEEEEECC---------CCCEeeeeccCCCCCcceecCCCEEECCE--EEEeCCCCCcCCCCEEE
Confidence            4455554    578899999987         455544443211    1111100001333  455422      58899


Q ss_pred             EEEcCCCCCCcccccccc-c-------------------------CcccceeeeEECCCCCcEEEeecCC----------
Q 018697          147 LWSLDCSNKNAQVQSKQS-S-------------------------GMLHYLSGGAWDPHDVNAVAATCES----------  190 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~-~-------------------------~~~~~v~~~~~~~~~~~l~~~~~d~----------  190 (351)
                      .+|..+++.......... .                         +.......++++|+...+++++.++          
T Consensus       182 a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~  261 (668)
T 1kv9_A          182 AYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSP  261 (668)
T ss_dssp             EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred             EEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCC
Confidence            999988776554432100 0                         0001122467888888888877665          


Q ss_pred             ---------eEEEEEcccCCcCceeecce-------------eEEEEcCCCCC--cEEEEecCCCeEEEEecccCCccee
Q 018697          191 ---------SVQFWDLRSMGKTNSIEHAH-------------VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQ  246 (351)
Q Consensus       191 ---------~i~iwd~~~~~~~~~~~~~~-------------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~  246 (351)
                               .|..+|+++++.+..++..+             ...+.+  +++  ..++.++.+|.++++|.++ ++.+.
T Consensus       262 ~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~  338 (668)
T 1kv9_A          262 GGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTN-GKLIS  338 (668)
T ss_dssp             TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTT-CCEEE
T ss_pred             CCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCC-CCEec
Confidence                     49999999999887776421             222233  443  2588899999999999887 55553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.34  E-value=0.001  Score=60.85  Aligned_cols=222  Identities=11%  Similarity=0.008  Sum_probs=139.9

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+.|+.+++.......  ......-..+..++|.+.+..|+.+   ...++.|..+++..         ......+....
T Consensus        14 ~~~I~~i~l~~~~~~~--~~~~~~~~~~~~l~~d~~~~~lywt---D~~~~~I~r~~~~g---------~~~~~v~~~g~   79 (628)
T 4a0p_A           14 RADIRRISLETNNNNV--AIPLTGVKEASALDFDVTDNRIYWT---DISLKTISRAFMNG---------SALEHVVEFGL   79 (628)
T ss_dssp             TTEEEEEESSCTTCEE--ECCCCSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETTS---------CSCEEEECSSC
T ss_pred             CCcEEEEECCCCCcce--EEEcCCCCceEEEEEECCCCEEEEE---ECCCCeEEEEECCC---------CCcEEEEeCCC
Confidence            5778888887543211  1111223567899999988888776   35677888888761         11122222222


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~  198 (351)
                      .....+++.+.+..++++-...+.|.+.+++...  ...+...   ......+++++|....|+.+.  ..+.|...++.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~---~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWK---DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECS---SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeC---CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence            4567888887777645554667899999987432  2222111   123578999999777777665  25678888876


Q ss_pred             cCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ............ ...+++++++..++++-...+.|..+|+.....  ..+.........+++.. + .++.+-...+.|
T Consensus       155 G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I  230 (628)
T 4a0p_A          155 GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSI  230 (628)
T ss_dssp             SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTEE
T ss_pred             CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCEE
Confidence            544322222222 899999998775667667788999999875222  33333334456777765 4 566666668888


Q ss_pred             EEEEcCCC
Q 018697          278 NLWLVSTS  285 (351)
Q Consensus       278 ~iwd~~~~  285 (351)
                      ...|..++
T Consensus       231 ~~~dk~tg  238 (628)
T 4a0p_A          231 ERANKTSG  238 (628)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            88887654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=0.00095  Score=63.13  Aligned_cols=236  Identities=12%  Similarity=0.037  Sum_probs=136.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee------------eeccccceeEEEecCCCC
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA------------LDAHVGKINCVLWWSSGR  133 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~  133 (351)
                      ..|.++...+++...+.+     ..+-|.+++....       .......            .......|.++...++|.
T Consensus       258 ~~i~~i~~d~~g~lWigt-----~~~Gl~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~  325 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIAT-----ELNGIMILDLQQN-------QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN  325 (781)
T ss_dssp             CCEEEEEECTTSEEEEEE-----SSSCEEEEETTCC----------------CEEECBCSSTTSBSSSCEEEEEECSSCC
T ss_pred             ceEEEEEECCCCCEEEEe-----CCCCeEEECCCCC-------eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC
Confidence            567888777777655543     3345777776521       1111110            012345789999888887


Q ss_pred             CcEEEEecCCcEEEEEcCCCCCCcccccc-----cccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce---
Q 018697          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSK-----QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS---  205 (351)
Q Consensus       134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---  205 (351)
                        +-++..++-|..++..... .......     ...-....|.++...+++. |.+|+.++.|..||..++.....   
T Consensus       326 --lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~  401 (781)
T 3v9f_A          326 --IWIGTWGGGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKEN  401 (781)
T ss_dssp             --EEEEEBSSCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---
T ss_pred             --EEEEecCCeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCC
Confidence              5666666778888876432 1111110     0011123688888887665 66677667788899775432211   


Q ss_pred             --eecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---CCCCceeEEEecCCCCCeEEEeeCCCeEEEE
Q 018697          206 --IEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (351)
Q Consensus       206 --~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  280 (351)
                        +....|.++...+++.  |..|+.++-|..+|.++ + .+..+.   .....|.++...+++ .+.+ |+. +-|..|
T Consensus       402 ~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~  474 (781)
T 3v9f_A          402 RELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRL-K-KFQIIELEKNELLDVRVFYEDKNK-KIWI-GTH-AGVFVI  474 (781)
T ss_dssp             --CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSS-C-EEEECCSTTTCCCCEEEEEECTTS-EEEE-EET-TEEEEE
T ss_pred             CCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCC-C-cEEEeccCCCCCCeEEEEEECCCC-CEEE-EEC-CceEEE
Confidence              1111189999888886  44477767788898764 3 233332   134678899888887 4444 444 458889


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceeec-----cccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSYS-----DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |...                   .+......     .....|.++...++|. +.+. +.++-|..|+..
T Consensus       475 ~~~~-------------------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig-t~~~Gl~~~~~~  523 (781)
T 3v9f_A          475 DLAS-------------------KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIG-TFGGGVGIYTPD  523 (781)
T ss_dssp             ESSS-------------------SSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEE-ESSSCEEEECTT
T ss_pred             eCCC-------------------CeEEecccCcccccccceeEEEEEcCCCC-EEEE-EcCCCEEEEeCC
Confidence            8876                   22111111     1135688999998887 4444 433336667654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.30  E-value=0.00024  Score=64.53  Aligned_cols=75  Identities=13%  Similarity=0.003  Sum_probs=49.9

Q ss_pred             eEECCCCCcEEEeecC----------------CeEEEEEcccCCcCceeecce-----------eEEEEcC-CCCC--cE
Q 018697          174 GAWDPHDVNAVAATCE----------------SSVQFWDLRSMGKTNSIEHAH-----------VRNVDYD-TKKK--HL  223 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~d----------------~~i~iwd~~~~~~~~~~~~~~-----------v~~~~~~-~~~~--~~  223 (351)
                      .++.++...++.+..+                +.|.-+|.++++.+..++..+           ..-+... .+|+  .+
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~  325 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKL  325 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEE
Confidence            4566677777777654                389999999998877766432           1112221 4562  26


Q ss_pred             EEEecCCCeEEEEecccCCcceeEee
Q 018697          224 LVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      ++.++.+|.++++|.++ ++++....
T Consensus       326 v~~~~~~G~l~~lD~~t-G~~lw~~~  350 (599)
T 1w6s_A          326 LTHPDRNGIVYTLDRTD-GALVSANK  350 (599)
T ss_dssp             EEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             EEEECCCcEEEEEECCC-CCEeeccc
Confidence            77789999999999987 65555443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=3.9e-05  Score=66.99  Aligned_cols=154  Identities=9%  Similarity=0.073  Sum_probs=99.2

Q ss_pred             ceeeeEECC-CCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCC----eEEEEecccCCc
Q 018697          170 YLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES----GIHLWDLRMLKA  243 (351)
Q Consensus       170 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  243 (351)
                      ....++++| ++..|+++...+.|+.+|+..+.......... ...++|+++++.++++...++    .+..++......
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            567889998 46667777655889999988755433333223 899999999985555544332    344455432111


Q ss_pred             ceeEeeCCCCceeEEEecC-CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc--ceeeccccceEEEE
Q 018697          244 PIQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--LNSYSDYEDSVYGL  320 (351)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~  320 (351)
                      ....+.. ......++++| ++ .++++-..++.|..++...                   ...  +..... ......+
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g-~lyv~d~~~~~V~~~~~~~-------------------~~~~~~~~~~~-~~~P~gi  275 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPING-ELYFNSWNAGQVFRYDFTT-------------------QETTPLFTIQD-SGWEFHI  275 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTC-CEEEEETTTTEEEEEETTT-------------------TEEEEEEECSS-SSCCEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCC-EEEEEECCCCEEEEEECCC-------------------CcEEEEEEcCC-CCcceeE
Confidence            1123322 33457888999 56 7777777788999999875                   322  112211 2346789


Q ss_pred             EeCCCCCceEEEeeeCCeEEEeecC
Q 018697          321 AWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +|+|++++++++-...+.|..++.+
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCC
Confidence            9999998666666678889998765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.27  E-value=0.00013  Score=66.10  Aligned_cols=167  Identities=11%  Similarity=0.023  Sum_probs=96.9

Q ss_pred             cEEEEEcCCCCCCccccccccc-----CcccceeeeEECCCCC---cEEEeecCCeEEEEEcccCCcCceeecce-----
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSS-----GMLHYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAH-----  210 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----  210 (351)
                      .|..+|..+++...........     ....++. +...++++   .++.++.+|.++++|.++++.+.......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            5888998887655443322110     0111221 22223563   46677889999999999988665443110     


Q ss_pred             ----------e--------------------------EEEEcCCCCCcEEEEec--------------------------
Q 018697          211 ----------V--------------------------RNVDYDTKKKHLLVTAA--------------------------  228 (351)
Q Consensus       211 ----------v--------------------------~~~~~~~~~~~~l~~~~--------------------------  228 (351)
                                +                          ..++++|+.. ++++..                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence                      0                          2356777776 444432                          


Q ss_pred             -----------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          229 -----------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       229 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                                 .++.|..||..+ ++.+.++.. ...+....+...+ .+++.++.|+.|+.+|.++             
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~-~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~t-------------  494 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWE-KFAAWGGTLYTKG-GLVWYATLDGYLKALDNKD-------------  494 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTT-------------
T ss_pred             eccCccccCCCCCCeEEEEECCC-CCEEEEecC-CCCccceeEEECC-CEEEEEcCCCeEEEEECCC-------------
Confidence                       357899999987 555555542 2233333333334 5677789999999999998             


Q ss_pred             CCcccccccceeeccccce-EEEEEeCCCCCceEEEee
Q 018697          298 SPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFASLS  334 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~  334 (351)
                            ++.+..+...... -.-+.+..+|+.++++.+
T Consensus       495 ------G~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          495 ------GKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             ------CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ------CCEEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence                  7877777543211 112335567774444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.26  E-value=0.001  Score=55.72  Aligned_cols=234  Identities=12%  Similarity=0.068  Sum_probs=118.4

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN  144 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  144 (351)
                      ...+.+|.|.+ + .++++    +..+.  ||.....     ..+++.+.....+...+..+.+.+++.  +++.+.++.
T Consensus        79 ~~~~~~i~~~~-~-~~~~~----g~~g~--i~~S~Dg-----G~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~g~  143 (327)
T 2xbg_A           79 DYRFNSVSFQG-N-EGWIV----GEPPI--MLHTTDG-----GQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITNVGA  143 (327)
T ss_dssp             CCEEEEEEEET-T-EEEEE----EETTE--EEEESST-----TSSCEECCCCTTCSSCEEEEEEEETTE--EEEEETTCC
T ss_pred             CccEEEEEecC-C-eEEEE----ECCCe--EEEECCC-----CCCceECccccCCCCCeEEEEEECCCC--EEEEeCCcc
Confidence            34688888876 3 34443    34453  3333210     012333222212334567777776665  455555565


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEE-EEcccCCcCceeec--ce-eEEEEcCCCC
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF-WDLRSMGKTNSIEH--AH-VRNVDYDTKK  220 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~--~~-v~~~~~~~~~  220 (351)
                      |  |...++..........   ....+..+.+.+++..++++ .++.+.. .|- .+..-..+..  .. +..+++.+++
T Consensus       144 v--~~S~DgG~tW~~~~~~---~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g  216 (327)
T 2xbg_A          144 I--YRTKDSGKNWQALVQE---AIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDG  216 (327)
T ss_dssp             E--EEESSTTSSEEEEECS---CCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTS
T ss_pred             E--EEEcCCCCCCEEeecC---CCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCC
Confidence            4  3333333333332222   23368889999987766554 4444433 332 1222222221  12 8888899988


Q ss_pred             CcEEEEecCCCeEEEEecccCCcceeEee----CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          221 KHLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      . +++ .+.+|.+++.+... ++....+.    .+...+..+.+.+++ .+++.+. ++.| ++....+.          
T Consensus       217 ~-~~~-~~~~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i-~~S~DgG~----------  280 (327)
T 2xbg_A          217 R-LWM-IVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL-LCSQDGGQ----------  280 (327)
T ss_dssp             C-EEE-EETTTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE-EEESSTTS----------
T ss_pred             C-EEE-EeCCceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE-EEeCCCCc----------
Confidence            7 444 45678877764221 11111111    122458889999876 6666554 6666 33333200          


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                            .+..+.........+.++.|.+++  .+++++.+|.|.-++-
T Consensus       281 ------tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          281 ------TWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ------SCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred             ------ccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence                  022222111223457788887554  4666777898776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.0016  Score=61.62  Aligned_cols=234  Identities=12%  Similarity=0.100  Sum_probs=136.2

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee-------eeccccceeEEEecCCCCCcEEE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-------LDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..|.++...+++..-+.+     .++-|..++...       ........       -......|.++...+++.  +.+
T Consensus       313 ~~v~~i~~D~~g~lWigt-----~~~Gl~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWi  378 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGT-----WGGGINFISNAP-------PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWI  378 (781)
T ss_dssp             SCEEEEEECSSCCEEEEE-----BSSCEEEECSSC-------CSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEE
T ss_pred             CeEEEEEEeCCCCEEEEe-----cCCeEEEeCCCC-------CcceeeccCccccccCCCCCcceEEEEEcCCCC--EEE
Confidence            467788777777555443     455677777551       11111110       011235689998888887  566


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee---cce-eEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH-VRNV  214 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~-v~~~  214 (351)
                      +..++-|..|+..+.. .... ..........|.++...+++. |.+|+.++.|..+|..+++......   ... |.++
T Consensus       379 gt~~~Gl~~~~~~~~~-~~~~-~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i  455 (781)
T 3v9f_A          379 GTDGGGINVFENGKRV-AIYN-KENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF  455 (781)
T ss_dssp             EEBSSCEEEEETTEEE-EECC------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred             EeCCCcEEEEECCCCe-EEEc-cCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence            6656678888876421 1111 111111234788888887665 5567776778889887654322111   112 8999


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CC-----CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GH-----THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      ...+++. +.+ |+. +-|..||..+ .+ ...+. ..     ...|.++...++| .+.+ |+.++-|..||...    
T Consensus       456 ~~d~~g~-lwi-gt~-~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~----  524 (781)
T 3v9f_A          456 YEDKNKK-IWI-GTH-AGVFVIDLAS-KK-VIHHYDTSNSQLLENFVRSIAQDSEG-RFWI-GTFGGGVGIYTPDM----  524 (781)
T ss_dssp             EECTTSE-EEE-EET-TEEEEEESSS-SS-CCEEECTTTSSCSCSCEEEEEECTTC-CEEE-EESSSCEEEECTTC----
T ss_pred             EECCCCC-EEE-EEC-CceEEEeCCC-Ce-EEecccCcccccccceeEEEEEcCCC-CEEE-EEcCCCEEEEeCCC----
Confidence            9998886 333 555 5688899775 32 22222 11     3578999999888 5444 44433477788765    


Q ss_pred             CCCCcccccCCcccccccceeec----cccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          289 ELPSESLVESPNQRANSLLNSYS----DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                     .+ +..+.    -....|.++...++|. +.++.. +|.|..|+..
T Consensus       525 ---------------~~-~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          525 ---------------QL-VRKFNQYEGFCSNTINQIYRSSKGQ-MWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             ---------------CE-EEEECTTTTCSCSCEEEEEECTTSC-EEEEET-TEEEEESCTT
T ss_pred             ---------------Ce-EEEccCCCCCCCCeeEEEEECCCCC-EEEEEC-CCceEEECCC
Confidence                           22 11221    1234688999888887 554443 6655777764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.23  E-value=1.1e-05  Score=74.86  Aligned_cols=158  Identities=13%  Similarity=0.043  Sum_probs=97.2

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCC---CCCcccccccccCcccceeeeEECCCCCcEEEe-ecCCeEEEEE
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS---NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TCESSVQFWD  196 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd  196 (351)
                      ..+..++|.+.+..++++-...+.|+.+++...   .....+....    ......+++.+.+..|+.+ ...+.|.+++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~----~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC----C--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC----CCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            456788999877753444356789999998741   1111111111    1245678888666666655 4568899999


Q ss_pred             cccCCcCceeecc-e-eEEEEcCCCCCcEEEEecCC-CeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEee
Q 018697          197 LRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADE-SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       197 ~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +........+... . ...++++|.+.+++++-... +.|.++++.. . ....+ ...-...+.|+|+|++..++++-+
T Consensus       482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V-DIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-C-CCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-C-CeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            8754332222211 2 78899999776455544333 7888888763 2 22222 222345678999998746666667


Q ss_pred             CCCeEEEEEcCC
Q 018697          273 TDSTVNLWLVST  284 (351)
Q Consensus       273 ~dg~i~iwd~~~  284 (351)
                      ..+.|..+++..
T Consensus       560 ~~~~I~~~d~dG  571 (699)
T 1n7d_A          560 KLHSISSIDVNG  571 (699)
T ss_dssp             TTTEEEEECSSS
T ss_pred             CCCeEEEEccCC
Confidence            778899998864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.19  E-value=7.2e-05  Score=69.24  Aligned_cols=220  Identities=8%  Similarity=-0.044  Sum_probs=113.0

Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeec-cccceeEEEecCCCCCcEEEEe-cCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      .+.+||...       .++..+..+.. +.....++++..++. ++++++ .+..+.+||..+..-.  ... .... ..
T Consensus       220 ~~~~yd~~t-------~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~~W~--~~~-~~~~-~R  287 (656)
T 1k3i_A          220 LTSSWDPST-------GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWI--PGP-DMQV-AR  287 (656)
T ss_dssp             EEEEECTTT-------CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEE--ECC-CCSS-CC
T ss_pred             EEEEEeCCC-------CcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCCcee--ECC-CCCc-cc
Confidence            577888762       23444443322 233344567778887 466665 4568999998854211  111 1111 11


Q ss_pred             ceeeeEECCCCCcEEEee-cC-----CeEEEEEcccCCcCce-------eecceeEEEEcCCCCCcEEEEecCC------
Q 018697          170 YLSGGAWDPHDVNAVAAT-CE-----SSVQFWDLRSMGKTNS-------IEHAHVRNVDYDTKKKHLLVTAADE------  230 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------  230 (351)
                      .-.+++..++++.++.|+ .+     ..+.+||..+.+-...       +... -....+..++. +++.|+.+      
T Consensus       288 ~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~-~~~~~~~~~~~-iyv~Gg~~g~~~~~  365 (656)
T 1k3i_A          288 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA-DKQGLYRSDNH-AWLFGWKKGSVFQA  365 (656)
T ss_dssp             SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC-CTTGGGTTTCS-CCEEECGGGCEEEC
T ss_pred             cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc-cccceeecCCc-eEEEECCCCcEEEe
Confidence            223445667888888887 34     5789999876542111       0000 00122334454 45555544      


Q ss_pred             ---CeEEEEecccCCcceeEeeCCC---------CceeEEEecC-CCCCeEEEeeCCC-----------eEEEEEcCCCC
Q 018697          231 ---SGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNP-EYDGFILSAGTDS-----------TVNLWLVSTSN  286 (351)
Q Consensus       231 ---g~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~~l~s~~~dg-----------~i~iwd~~~~~  286 (351)
                         ..+..||... ..-......+.         ..-.++.|.. ++ .+++.|+.++           .|.+||.....
T Consensus       366 ~~~~~v~~yd~~~-~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~  443 (656)
T 1k3i_A          366 GPSTAMNWYYTSG-SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPGTSP  443 (656)
T ss_dssp             CSSSEEEEEECST-TCEEEEEEECEETTEECCCCBTCEEEEEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTTSCC
T ss_pred             cCccceeeeecCC-cceeecCCccccccccCCCCCCCceEeccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC
Confidence               3567888775 22222221111         1223444443 45 7888887543           56677766510


Q ss_pred             CCCCCCcccccCCcccccccce--eeccccceEEEEEeCCCCCceEEEeeeC-----------CeEEEeecCc
Q 018697          287 HDELPSESLVESPNQRANSLLN--SYSDYEDSVYGLAWSSREPWIFASLSYD-----------GRVVVESVKP  346 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~  346 (351)
                                       +..+.  .+.. ...-.+....|+++ +++.|+.+           ..+.+||..+
T Consensus       444 -----------------W~~~~~~~mp~-~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          444 -----------------NTVFASNGLYF-ARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             -----------------EEEECTTCCSS-CCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             -----------------eeEEccCCCCC-CcccCCeEECCCCC-EEEECCcccCcCcCCCCcccceEEEcCCC
Confidence                             11111  1111 11123445668888 88888754           4578888754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.19  E-value=0.002  Score=56.20  Aligned_cols=237  Identities=5%  Similarity=-0.045  Sum_probs=127.8

Q ss_pred             eecCCCC--cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce-EEEEE
Q 018697           21 DVKADTD--HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQ   97 (351)
Q Consensus        21 ~~~~~~~--~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~-i~vw~   97 (351)
                      .+.++++  ..++++....    +.|+.++..  .+.+.  .+.........+++++++. |+.+...+..+.. +...+
T Consensus       143 gvavd~~s~~g~Lyv~D~~----~~I~~id~~--~g~v~--~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQR----DAFRHVDFV--NQYVD--IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             EEEECTTTTTCEEEEECBT----SCEEEEETT--TTEEE--EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             eEEEccccCCCEEEEEeCC----CCEEEEECC--CCEEE--EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            3444542  4455554322    455544442  23322  2333445688999999998 5554211111112 22222


Q ss_pred             cccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC
Q 018697           98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD  177 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  177 (351)
                      ...        .......+. .-.....+++.|+...++++...++.|+.++..++.....+.....   ......++|+
T Consensus       214 ~~~--------~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~d  281 (433)
T 4hw6_A          214 RAS--------GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWH  281 (433)
T ss_dssp             GGG--------TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEEC
T ss_pred             CCC--------Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEe
Confidence            221        111011121 2234567889994443344445678899998875432122221111   1123469999


Q ss_pred             CCCCcEEEee-cCCeEEEEEccc--CCcC--ceee---------c--------ceeEEEEc---------CCCCCcEEEE
Q 018697          178 PHDVNAVAAT-CESSVQFWDLRS--MGKT--NSIE---------H--------AHVRNVDY---------DTKKKHLLVT  226 (351)
Q Consensus       178 ~~~~~l~~~~-~d~~i~iwd~~~--~~~~--~~~~---------~--------~~v~~~~~---------~~~~~~~l~~  226 (351)
                      |+++.|+.+. ..+.|+.++...  +...  ..+.         .        .+...+++         .+++. ++++
T Consensus       282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyva  360 (433)
T 4hw6_A          282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFC  360 (433)
T ss_dssp             TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEE
Confidence            9999666654 568899988652  2211  1110         0        01677888         67775 7777


Q ss_pred             ecCCCeEEEEecccCCcceeEeeCC------------------CCceeEEEec-CCCCCeEEEeeCCCeEEEEEcC
Q 018697          227 AADESGIHLWDLRMLKAPIQELPGH------------------THWTWAVCCN-PEYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       227 ~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      -..++.|+.++..  + .+.++.+.                  -.....|+++ +++ .++++-...+.|+.++++
T Consensus       361 D~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          361 DRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred             ECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence            7778899999853  3 34444322                  1235678888 555 666666667788887764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.18  E-value=0.0029  Score=57.92  Aligned_cols=217  Identities=11%  Similarity=-0.012  Sum_probs=131.0

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM  167 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  167 (351)
                      ....|+..++..         ......+. ..-..+..++|.+.+..++.+-..++.|..++++... ...+....    
T Consensus        13 ~~~~I~~i~l~~---------~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g----   78 (628)
T 4a0p_A           13 RRADIRRISLET---------NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFG----   78 (628)
T ss_dssp             ETTEEEEEESSC---------TTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS----
T ss_pred             eCCcEEEEECCC---------CCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCC----
Confidence            445788888862         11111111 1234578999999877645555667899999987432 22222211    


Q ss_pred             ccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEe-cCCCeEEEEecccCC
Q 018697          168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTA-ADESGIHLWDLRMLK  242 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~  242 (351)
                      .....++++.+.+..|+.+. ..+.|.+.++..... ..+....   ...++++|....++++- +..+.|...++..  
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG--  155 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG--  155 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC--
Confidence            12567888887777676654 568899999875432 2222122   89999999665455554 2357888888764  


Q ss_pred             cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018697          243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (351)
                      .....+...-...+.|++++++.++..+-...+.|...|+..                   ... ..+........++++
T Consensus       156 ~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-------------------~~~-~v~~~~l~~P~glav  215 (628)
T 4a0p_A          156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-------------------LNR-EVIADDLPHPFGLTQ  215 (628)
T ss_dssp             CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-------------------CSC-EEEEECCSCEEEEEE
T ss_pred             CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-------------------Cce-EEeeccCCCceEEEE
Confidence            233333334567789999998745556666678899999864                   111 222222223456766


Q ss_pred             CCCCCceEEEeeeCCeEEEeec
Q 018697          323 SSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      .. +. ++.+-...+.|...|.
T Consensus       216 ~~-~~-ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          216 YQ-DY-IYWTDWSRRSIERANK  235 (628)
T ss_dssp             ET-TE-EEEEETTTTEEEEEET
T ss_pred             EC-CE-EEEecCCCCEEEEEEC
Confidence            54 33 5666555677766663

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.14  E-value=0.0005  Score=57.24  Aligned_cols=191  Identities=14%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCC----CCC--cEEEE-ec--CCcEE
Q 018697           76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS----GRH--DKLVS-ID--EENIF  146 (351)
Q Consensus        76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~--~~~~~-~~--d~~v~  146 (351)
                      ....++++    ...+-+.+||+.          ++.+..+..  +.++.+..-|.    ++.  +++++ ..  +++|.
T Consensus        39 ~~s~ii~t----~k~~gL~Vydl~----------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           39 QNSKLITT----NKKSGLVVYSLD----------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             GGCEEEEE----ETTTEEEEEETT----------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             CccEEEEE----cCCCCEEEEcCC----------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            34455554    466789999986          466666643  45566555552    221  24455 33  58999


Q ss_pred             EEEcCCCCCCcccccc---cccCcccceeeeEE--CCCCC--cEEEeecCCeEEEEEcc-------cCCcCceeecce-e
Q 018697          147 LWSLDCSNKNAQVQSK---QSSGMLHYLSGGAW--DPHDV--NAVAATCESSVQFWDLR-------SMGKTNSIEHAH-V  211 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~--~~~~~--~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~-v  211 (351)
                      +|++............   ....-...++.+++  +|...  ++++...+|.+..|++.       +.+.++++..+. +
T Consensus       103 vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~  182 (355)
T 3amr_A          103 IYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT  182 (355)
T ss_dssp             EEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE
T ss_pred             EEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc
Confidence            9987522211111110   00011136778888  77543  57777888999999984       234556666555 8


Q ss_pred             EEEEcCCCCCcEEEEecCCCeEEEEecccC----CcceeEee-CC-CCceeEEEe--cCCCCCeEEEee-CCCeEEEEEc
Q 018697          212 RNVDYDTKKKHLLVTAADESGIHLWDLRML----KAPIQELP-GH-THWTWAVCC--NPEYDGFILSAG-TDSTVNLWLV  282 (351)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~-~~-~~~v~~~~~--~~~~~~~l~s~~-~dg~i~iwd~  282 (351)
                      ..++..+... .|+.+-++..|..|+.+..    .+.+..+. ++ ...+..|++  .+++..+|++++ .+.+..+||.
T Consensus       183 EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          183 EGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             ceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            8888988777 6777888877777775521    12333332 22 236788887  566533555555 5779999999


Q ss_pred             C
Q 018697          283 S  283 (351)
Q Consensus       283 ~  283 (351)
                      .
T Consensus       262 ~  262 (355)
T 3amr_A          262 Q  262 (355)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.14  E-value=0.00034  Score=63.56  Aligned_cols=168  Identities=10%  Similarity=0.040  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCCCCccccccccc-----CcccceeeeEEC-CCCC---cEEEeecCCeEEEEEcccCCcCceeecce---
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSS-----GMLHYLSGGAWD-PHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---  210 (351)
                      +.|..+|..+++...........     ....++. +... .+++   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            57999999887765554332111     0011121 1221 3563   67778899999999999888664433210   


Q ss_pred             --------------------------------------------eEEEEcCCCCCcEEEEec------------------
Q 018697          211 --------------------------------------------VRNVDYDTKKKHLLVTAA------------------  228 (351)
Q Consensus       211 --------------------------------------------v~~~~~~~~~~~~l~~~~------------------  228 (351)
                                                                  ...++++|+.. ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                                                        11346666655 333322                  


Q ss_pred             ---------------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          229 ---------------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       229 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                                     .+|.|..||+.+ ++.+-+.... .++..-.....+ .+++.++.|+.++.||.++         
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~-~~~~~g~~~tag-glvf~g~~dg~l~A~D~~t---------  516 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS---------  516 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTT---------
T ss_pred             ceeccceeecCCCCCCcceEEEEECCC-CCEEEEecCC-CCCcccceEeCC-CEEEEECCCCcEEEEECCC---------
Confidence                           357899999987 5555554422 222221122234 5777799999999999999         


Q ss_pred             ccccCCcccccccceeeccccceE-EEEEeCCCCCceEEEee
Q 018697          294 SLVESPNQRANSLLNSYSDYEDSV-YGLAWSSREPWIFASLS  334 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~  334 (351)
                                ++.+..++...... .-+.+..+|+.++++.+
T Consensus       517 ----------G~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          517 ----------GKELWKFQTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             ----------CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ----------CCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence                      88887776533211 12566678875555443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.10  E-value=0.0012  Score=60.03  Aligned_cols=167  Identities=11%  Similarity=0.050  Sum_probs=94.6

Q ss_pred             CcEEEEEcCCCCCCcccccccccC-----cccceeeeEEC-CCC---CcEEEeecCCeEEEEEcccCCcCceeecce---
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSG-----MLHYLSGGAWD-PHD---VNAVAATCESSVQFWDLRSMGKTNSIEHAH---  210 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---  210 (351)
                      +.|..+|.++++............     ...++. +... .++   +.++.++.+|.++++|.++++.+.......   
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence            478889998876554443322100     011111 1221 456   456667899999999999988665443110   


Q ss_pred             --------------------------------------eEEEEcCCCCCcEEEEe-------------------------
Q 018697          211 --------------------------------------VRNVDYDTKKKHLLVTA-------------------------  227 (351)
Q Consensus       211 --------------------------------------v~~~~~~~~~~~~l~~~-------------------------  227 (351)
                                                            -..++++|+.. ++++.                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCcceeccc
Confidence                                                  12456666655 33332                         


Q ss_pred             --------c------CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCc
Q 018697          228 --------A------DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE  293 (351)
Q Consensus       228 --------~------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  293 (351)
                              +      ..|.|..||+.+ ++.+-+... ..+...-.....+ .+++.++.|+.++.||.++         
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~t---------  503 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDT---------  503 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTT---------
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCC-CCEEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCC---------
Confidence                    1      347788888887 555544431 1222211122234 5777799999999999999         


Q ss_pred             ccccCCcccccccceeeccccce-EEEEEeCCCCCceEEEe
Q 018697          294 SLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFASL  333 (351)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~  333 (351)
                                ++.+..++-.... ..-+.+..+|+.++++.
T Consensus       504 ----------G~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          504 ----------GDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             ----------CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ----------CCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence                      8887777533211 12245556777555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.08  E-value=0.0027  Score=58.12  Aligned_cols=224  Identities=10%  Similarity=-0.024  Sum_probs=130.1

Q ss_pred             CCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      ..+.|+.+++......  .......-..+..++|++.+..|+.+   .-..+.|..+++..        .......+...
T Consensus        16 ~~~~I~~i~~~~~~~~--~~~~~~~~~~~~~ld~~~~~~~ly~s---D~~~~~I~r~~~~g--------~~~~~~v~~~~   82 (619)
T 3s94_A           16 NRRDLRLVDATNGKEN--ATIVVGGLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNK--------TESVQNVVVSG   82 (619)
T ss_dssp             CSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSS
T ss_pred             ccccEEEEeCCCCcce--EEEEEcCCCceEEEEEEeCCCEEEEE---ECCCCeEEEEEccC--------CCceEEEEeCC
Confidence            3567777777653211  11222334567899999988887776   24567788888762        11112223223


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec--CCeEEEEEc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDL  197 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~  197 (351)
                      -.....+++.+.+..++++-...+.|.+.+++... ...+...    ......++++.|.+..|+.+..  .+.|...++
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~----~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~  157 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQ----ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  157 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS----SCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeC----CCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence            35678999999777545555678899999998432 2222211    1235789999998777777653  467777776


Q ss_pred             ccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          198 RSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       198 ~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      ... ....+....   ...+++++++..++++-...+.|..+|+.. ........+.......|++..+  .++.+-...
T Consensus       158 dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~  233 (619)
T 3s94_A          158 DGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED--ILYWTDWST  233 (619)
T ss_dssp             TSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-CEEC---------CCCEEESSS--EEEEECTTT
T ss_pred             CCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-CccEEEEeCCCCCceEEEEeCC--EEEEecCCC
Confidence            643 333332112   889999997765667666778999999864 2211111211222346666543  455666667


Q ss_pred             CeEEEEEcCCC
Q 018697          275 STVNLWLVSTS  285 (351)
Q Consensus       275 g~i~iwd~~~~  285 (351)
                      +.|...|..++
T Consensus       234 ~~V~~~d~~tg  244 (619)
T 3s94_A          234 HSILACNKYTG  244 (619)
T ss_dssp             CSEEEEESSSC
T ss_pred             CEEEEEECCCC
Confidence            78888887664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.00095  Score=58.70  Aligned_cols=158  Identities=9%  Similarity=0.005  Sum_probs=96.9

Q ss_pred             ceeEEEecCC-CCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE-------CCCCCcEEEeecCC---
Q 018697          122 KINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-------DPHDVNAVAATCES---  190 (351)
Q Consensus       122 ~v~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~---  190 (351)
                      ....|+|.|. ...++++-...+.|++.|+.+.. ...+.. ...........++|       +++++.|+++...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~-~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLN-INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEEC-CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEc-cCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            3568899984 55434444444678888887532 222221 11112335889999       99999777776543   


Q ss_pred             ----eEEEEEccc-CCcC-----ceeec-ceeEEEEcCCCCCcEEEEecCCCeEEEEecc-------cCCcc--------
Q 018697          191 ----SVQFWDLRS-MGKT-----NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLR-------MLKAP--------  244 (351)
Q Consensus       191 ----~i~iwd~~~-~~~~-----~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~--------  244 (351)
                          .|.+++... +...     ..+.. .+...++++|++.+++++-..++.|..+|+.       . +..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-ceeeccccccc
Confidence                366666443 2222     12221 1277889999766678888888999999987       3 221        


Q ss_pred             ---eeE-ee-CCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcC
Q 018697          245 ---IQE-LP-GHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVS  283 (351)
Q Consensus       245 ---~~~-~~-~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~  283 (351)
                         ... +. +.......|+|+|+| . ++++-.....|+.++..
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecC
Confidence               112 21 223456789999999 6 45555667788887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.05  E-value=0.0017  Score=59.47  Aligned_cols=181  Identities=10%  Similarity=-0.013  Sum_probs=108.0

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ....|+..++..        .......+...-..+..++|++.+..++++-...+.|..++++.......+....    .
T Consensus        16 ~~~~I~~i~~~~--------~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~----~   83 (619)
T 3s94_A           16 NRRDLRLVDATN--------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----L   83 (619)
T ss_dssp             CSSBEEEECCC-----------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS----C
T ss_pred             ccccEEEEeCCC--------CcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC----C
Confidence            456788888762        1101111222334577899999777644444557889999887532112222211    1


Q ss_pred             cceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEec-CCCeEEEEecccCCc
Q 018697          169 HYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKA  243 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  243 (351)
                      ....++++.+.+..|+.+. ..+.|.+.++..... ..+....   ...++++|.+.+++++-- ..+.|...++.-  .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--S  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS--C
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC--C
Confidence            2678899998777676664 578999999875433 2332122   889999998664555542 346777777763  2


Q ss_pred             ceeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          244 PIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       244 ~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ....+ ...-...+.|++++++.+++++-...+.|...|+..
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            23333 233456789999997645556656677888888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.04  E-value=0.0047  Score=52.72  Aligned_cols=271  Identities=12%  Similarity=0.167  Sum_probs=164.2

Q ss_pred             cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC
Q 018697           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS  107 (351)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~  107 (351)
                      +.++++-....++.+++.++++...+...  ++-.    .--+.-.+|..+.++.-     ...++.|+|++        
T Consensus        34 SDkyicVrE~~~~~~~vvIiDl~~~~~~~--rrpi----~AdsAIMnP~~~iiALr-----ag~~lQiFnle--------   94 (494)
T 1bpo_A           34 SDKFICIREKVGEQAQVVIIDMNDPSNPI--RRPI----SADSAIMNPASKVIALK-----AGKTLQIFNIE--------   94 (494)
T ss_dssp             ETTEEEEEECCTTCCEEEEEETTSTTSCE--EEEC----CCSEEEECSSSSCEEEE-----ETTEEEEEETT--------
T ss_pred             cCceEEEEecCCCCCeEEEEECCCCCcce--eccc----ccceeeeCCCCcEEEEe-----cCCeEEEEchH--------
Confidence            44566555556677788888888865532  2111    12244568877655553     35689999998        


Q ss_pred             CcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee
Q 018697          108 PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       108 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                       ....+....- ...|.-=.|-.+.. +.++  .+..|+-|++.......+++..+..-....|.....+++.++++..+
T Consensus        95 -~K~klks~~~-~e~VvfWkWis~~~-l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G  169 (494)
T 1bpo_A           95 -MKSKMKAHTM-TDDVTFWKWISLNT-VALV--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (494)
T ss_dssp             -TTEEEEEEEC-SSCCCEEEEEETTE-EEEE--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred             -Hhhhhcceec-CCCceEEEecCCCe-EEEE--cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence             4455555533 34566667766654 2333  35789999998655555555544222234677788899999877554


Q ss_pred             ---c----CCeEEEEEcccCCcCceeecce---eEEEEcC--CCCCcEEEEecC---CCeEEEEecccC--Cc-c--eeE
Q 018697          188 ---C----ESSVQFWDLRSMGKTNSIEHAH---VRNVDYD--TKKKHLLVTAAD---ESGIHLWDLRML--KA-P--IQE  247 (351)
Q Consensus       188 ---~----d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~--~~~~~~l~~~~~---dg~i~i~d~~~~--~~-~--~~~  247 (351)
                         .    .|.+.+|..+.+ ....++ +|   ...+.+.  +....+++.+..   .+.++|.++...  +. +  .+.
T Consensus       170 I~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~  247 (494)
T 1bpo_A          170 ISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA  247 (494)
T ss_dssp             EEEETTEEEEEEEEEESTTC-CEEEEC-CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEE
T ss_pred             ecccCCcccceEEEeecccc-ccchhe-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcccee
Confidence               2    367888888754 223333 66   2223222  111224444443   378999998653  11 1  111


Q ss_pred             ee------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEE
Q 018697          248 LP------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA  321 (351)
Q Consensus       248 ~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  321 (351)
                      ..      .-.+-..++..++.. .+++.-+.-|.|++||+.+                   +.++..-+-..++|..-+
T Consensus       248 vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleT-------------------gt~i~~nrIs~~~iF~t~  307 (494)
T 1bpo_A          248 VDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET-------------------GTCIYMNRISGETIFVTA  307 (494)
T ss_dssp             EECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEEE
T ss_pred             eeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEeccc-------------------ceeeeeecccCCceEEec
Confidence            11      112334567778877 7888899999999999999                   888877766666676555


Q ss_pred             eCCCCCceEEEeeeCCeEEEeecC
Q 018697          322 WSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       322 ~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      -+..... ++.....|.|.--.++
T Consensus       308 ~~~~~~G-i~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          308 PHEATAG-IIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             EETTTTE-EEEEETTCEEEEEEEC
T ss_pred             ccCCCCc-EEEEccCceEEEEEEc
Confidence            5554442 4455567776655554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.03  E-value=0.0047  Score=52.31  Aligned_cols=235  Identities=9%  Similarity=0.033  Sum_probs=125.3

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee---ccccceeEEEecCC---CCCcEEE
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSS---GRHDKLV  138 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~~~~  138 (351)
                      -.....++|.|+++.+++     ..++.|++++..        .. +.+..+.   ........|+++|+   +..++++
T Consensus        28 l~~P~~ia~~pdG~l~V~-----e~~g~I~~~d~~--------G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-----ERPGRLVLISPS--------GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-----ETTTEEEEECSS--------CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-----eCCCEEEEEeCC--------Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            356789999999875554     245888888632        11 2222221   22356789999998   5544444


Q ss_pred             Eec---C----CcEEEEEcCCCC-CC---cccccccccCcccceeeeEECCCCCcEEEeec-------------CCeEEE
Q 018697          139 SID---E----ENIFLWSLDCSN-KN---AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQF  194 (351)
Q Consensus       139 ~~~---d----~~v~iwd~~~~~-~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i  194 (351)
                      -..   +    ..|..|+..... ..   ..++.............++|.|++...++.+.             .|.|.-
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence            342   3    567777776431 11   11111111111124577999999975555432             245665


Q ss_pred             EEcccCC-------cCceeecce--eEEEEcCC-CCCcEEEEecCCC---eEEEEeccc---------------CCccee
Q 018697          195 WDLRSMG-------KTNSIEHAH--VRNVDYDT-KKKHLLVTAADES---GIHLWDLRM---------------LKAPIQ  246 (351)
Q Consensus       195 wd~~~~~-------~~~~~~~~~--v~~~~~~~-~~~~~l~~~~~dg---~i~i~d~~~---------------~~~~~~  246 (351)
                      ++....-       ....+..++  ...++|+| ++. ++++-....   .|.+.....               ...++.
T Consensus       174 i~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  252 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI  252 (354)
T ss_dssp             ECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             EcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence            6654220       112222233  78999999 565 555433222   244332110               012333


Q ss_pred             EeeCCCCceeEEEec-------CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc--ee-eccccce
Q 018697          247 ELPGHTHWTWAVCCN-------PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NS-YSDYEDS  316 (351)
Q Consensus       247 ~~~~~~~~v~~~~~~-------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~  316 (351)
                      .+.........++|.       .+| .++++.-..+.|...++...                  +...  .. +......
T Consensus       253 ~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~------------------g~~~~~~~~~~~~~~r  313 (354)
T 3a9g_A          253 DTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDN------------------MEVRKISTFFKNVFGR  313 (354)
T ss_dssp             ECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGG------------------GCEEEEEEECTTTSCC
T ss_pred             ecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCC------------------CcccceeeeccCCCCC
Confidence            331122356778873       456 67777666778888887641                  1111  11 2222346


Q ss_pred             EEEEEeCCCCCceEEEee
Q 018697          317 VYGLAWSSREPWIFASLS  334 (351)
Q Consensus       317 v~~~~~~~~~~~~l~s~~  334 (351)
                      +..+++.|||. ++++..
T Consensus       314 p~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          314 LRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             EEEEEECTTSC-EEEEEC
T ss_pred             eeEEEECCCCc-EEEEEe
Confidence            88999999998 565553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.99  E-value=0.0011  Score=60.19  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             eeEECCCCCcEEEeec--------------------C----CeEEEEEcccCCcCceeecce-----------eEEEEcC
Q 018697          173 GGAWDPHDVNAVAATC--------------------E----SSVQFWDLRSMGKTNSIEHAH-----------VRNVDYD  217 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~--------------------d----~~i~iwd~~~~~~~~~~~~~~-----------v~~~~~~  217 (351)
                      .++++|+...++++..                    |    +.|.-+|.++++.+..++..+           ..-+...
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            3566777777776653                    2    589999999999887775321           1111111


Q ss_pred             -CCCC--cEEEEecCCCeEEEEecccCCcceeEee
Q 018697          218 -TKKK--HLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       218 -~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                       .+|+  .+++.++.+|.++++|.++ ++++..+.
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~  363 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFP  363 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCC-CCEecccc
Confidence             3553  2678899999999999887 55555443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.92  E-value=0.0027  Score=52.87  Aligned_cols=204  Identities=10%  Similarity=0.090  Sum_probs=117.6

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCC----CCc--eEEEEeecCC--cceEEE
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF----DQR--IFSTVFSTGE--SYGAAI   95 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~--l~~~~~~~~~--d~~i~v   95 (351)
                      .++...+ ++|+.   ..+.+.++++.  ++.+.  .+.  .+.++.+..-|.    ++.  ++++.  ...  +++|++
T Consensus        36 ~dp~~s~-ii~t~---k~~gL~Vydl~--G~~l~--~~~--~g~~nnVD~r~~~~l~g~~~dla~as--~R~~~~n~l~v  103 (355)
T 3amr_A           36 KTPQNSK-LITTN---KKSGLVVYSLD--GKMLH--SYN--TGKLNNVDIRYDFPLNGKKVDIAAAS--NRSEGKNTIEI  103 (355)
T ss_dssp             SCGGGCE-EEEEE---TTTEEEEEETT--SCEEE--EEC--CSCEEEEEEEEEEEETTEEEEEEEEE--ECSTTCCEEEE
T ss_pred             CCCCccE-EEEEc---CCCCEEEEcCC--CcEEE--Ecc--CCCcccEEEecccccCCceEeEEEEe--CCCCCCCeEEE
Confidence            4444444 77764   34678888883  23222  222  256666666552    222  33332  344  678999


Q ss_pred             EEcccccCCCCCCcceeeeeeec------cc-cceeEEEe--cCCC-CCcEEEEecCCcEEEEEcCCC---CCCcccccc
Q 018697           96 WQIPELYGQLNSPQLERIAALDA------HV-GKINCVLW--WSSG-RHDKLVSIDEENIFLWSLDCS---NKNAQVQSK  162 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~------h~-~~v~~~~~--~~~~-~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~  162 (351)
                      |++..        ....+..+..      .. ..+..+++  +|.. ...++++..+|.+..|++...   ....+....
T Consensus       104 f~iDp--------~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A          104 YAIDG--------KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             EEECT--------TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEECC--------CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence            98851        1122333311      11 45667777  7754 333566677899999998531   111122111


Q ss_pred             cccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc-----CCcCceeecce----eEEEEc--CCCCC-cEEEEecCC
Q 018697          163 QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-----MGKTNSIEHAH----VRNVDY--DTKKK-HLLVTAADE  230 (351)
Q Consensus       163 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~----v~~~~~--~~~~~-~~l~~~~~d  230 (351)
                      ..  ....+..+...+....|+++-.+..|..+|.+.     ++.+..+..++    +..|++  .++++ ++++++-.+
T Consensus       176 f~--lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          176 FK--MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EE--CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ec--CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            11  123678888998888999999887777777542     22332222232    677777  55555 577777678


Q ss_pred             CeEEEEecccCCcceeEee
Q 018697          231 SGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~  249 (351)
                      .+..+||.+...+.+..|.
T Consensus       254 ~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          254 SSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             TEEEEEESSTTCCEEEEEE
T ss_pred             CEEEEEECCCCCcEEEEEE
Confidence            8999999974355566664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.91  E-value=0.00081  Score=55.48  Aligned_cols=153  Identities=8%  Similarity=0.127  Sum_probs=99.9

Q ss_pred             ceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCc-eeec----c----eeEEEEc---CCCCCcEEEEec--------
Q 018697          170 YLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTN-SIEH----A----HVRNVDY---DTKKKHLLVTAA--------  228 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~~~~----~----~v~~~~~---~~~~~~~l~~~~--------  228 (351)
                      ...++.|++....++.++ ..+.|..||...+.... .+..    +    ++..+.|   .|+++ ++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccccccc
Confidence            456789988777777776 78999999987553222 2221    1    1789999   68876 666433        


Q ss_pred             -----CCCeEEEEecc---cCCcceeEee--C-----------CCCceeEEEecCCCCCeEEEeeCC-CeEEEEEcCCCC
Q 018697          229 -----DESGIHLWDLR---MLKAPIQELP--G-----------HTHWTWAVCCNPEYDGFILSAGTD-STVNLWLVSTSN  286 (351)
Q Consensus       229 -----~dg~i~i~d~~---~~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~  286 (351)
                           .+..|..||+.   + ++.+....  .           -......++..++| +..++++.- +.|...+..-  
T Consensus        93 g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG--  168 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG--  168 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS--
T ss_pred             ccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC--
Confidence                 25789999998   5 33443332  1           11347899999999 888888877 7766555543  


Q ss_pred             CCCCCCcccccCCcccccccceee------ccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          287 HDELPSESLVESPNQRANSLLNSY------SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                        +.+..+      .......+.|+++|+|..+++..+ +|.|..+|+..
T Consensus       169 ------------------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          169 ------------------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             ------------------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             ------------------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence                              212211      111223678999999985555555 99999999763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.89  E-value=0.0048  Score=51.92  Aligned_cols=190  Identities=9%  Similarity=0.065  Sum_probs=106.0

Q ss_pred             ceeEEEecCCCCCcEEEEe-------------cCCcEEEEEcCCCCCCccccccc---ccCcccceeeeEECC--CCC-c
Q 018697          122 KINCVLWWSSGRHDKLVSI-------------DEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDP--HDV-N  182 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~-------------~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~--~~~-~  182 (351)
                      ..-.+...|+|.  +++++             .+|.|.++|+++.......+...   .....-....+.+.+  ++. +
T Consensus        51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            345666778765  45554             68999999998432221111111   111122455666644  343 4


Q ss_pred             EEEee---cCCeEEEEEcccCCcCc----eeecce---eEEEEcCCCCCcEEEEec-----------------CCCeEEE
Q 018697          183 AVAAT---CESSVQFWDLRSMGKTN----SIEHAH---VRNVDYDTKKKHLLVTAA-----------------DESGIHL  235 (351)
Q Consensus       183 l~~~~---~d~~i~iwd~~~~~~~~----~~~~~~---v~~~~~~~~~~~~l~~~~-----------------~dg~i~i  235 (351)
                      |+++.   .+..|.+|++.......    .+....   .+.+++.++|. ++++..                 ..|.|..
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence            55553   25788888887543222    222111   89999999997 555543                 1245555


Q ss_pred             EecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccc
Q 018697          236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED  315 (351)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      +|..   + +..+...-...+.++|+|++..++++-+..+.|..|++.....                ......+ ....
T Consensus       208 ~d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~----------------l~~~~~~-~~~g  266 (355)
T 3sre_A          208 YSPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT----------------LTPLRVL-SFDT  266 (355)
T ss_dssp             ECTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC----------------EEEEEEE-ECSS
T ss_pred             EECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc----------------EecCEEE-eCCC
Confidence            5542   2 3333323345689999999944445556678999999864100                1111122 1234


Q ss_pred             eEEEEEeCC-CCCceEEEeeeC
Q 018697          316 SVYGLAWSS-REPWIFASLSYD  336 (351)
Q Consensus       316 ~v~~~~~~~-~~~~~l~s~~~d  336 (351)
                      ....++..+ +|. +.+++..+
T Consensus       267 ~PDGi~vD~e~G~-lwva~~~~  287 (355)
T 3sre_A          267 LVDNISVDPVTGD-LWVGCHPN  287 (355)
T ss_dssp             EEEEEEECTTTCC-EEEEEESC
T ss_pred             CCceEEEeCCCCc-EEEEecCC
Confidence            567888998 587 66655433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.88  E-value=0.0089  Score=50.57  Aligned_cols=243  Identities=11%  Similarity=0.035  Sum_probs=123.8

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee----eeccccceeEEEecCC---CCCcEEE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA----LDAHVGKINCVLWWSS---GRHDKLV  138 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~---~~~~~~~  138 (351)
                      ...+.|+|.|+++.|+++    ...+.|++++....       ....+..    ..........++++|+   +..++++
T Consensus        18 ~~P~~i~~~pdG~~l~V~----e~~G~i~~~~~~g~-------~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT----LRGGELRHWQAGKG-------LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE----ETTTEEEEEETTTE-------ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEE----eCCceEEEEeCCCc-------eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            456799999999834443    35678888874310       0011111    1122345689999996   5544444


Q ss_pred             Eec-------CCcEEEEEcCCCCC----Ccccccccc--cCcccceeeeEECCCCCcEEEeec-------------CCeE
Q 018697          139 SID-------EENIFLWSLDCSNK----NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATC-------------ESSV  192 (351)
Q Consensus       139 ~~~-------d~~v~iwd~~~~~~----~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i  192 (351)
                      -..       ...|..|++.....    ...++....  .........++|.|++...++.+.             .|.|
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            332       23566666653211    111111110  011123567999999965444332             2467


Q ss_pred             EEEEcccCC------------cCceeecce--eEEEEcCC-CCCcEEEEecC-CC--eEEEEecc--------c------
Q 018697          193 QFWDLRSMG------------KTNSIEHAH--VRNVDYDT-KKKHLLVTAAD-ES--GIHLWDLR--------M------  240 (351)
Q Consensus       193 ~iwd~~~~~------------~~~~~~~~~--v~~~~~~~-~~~~~l~~~~~-dg--~i~i~d~~--------~------  240 (351)
                      .-++....-            ....+..++  ...++|+| ++. ++++-.. ++  .|.+....        .      
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~  245 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYS  245 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTT
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCC
Confidence            666765321            122333333  88999999 565 4443221 11  22221100        0      


Q ss_pred             --------------CCcceeEeeCCCCceeEEEecC-------CCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          241 --------------LKAPIQELPGHTHWTWAVCCNP-------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       241 --------------~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                                    ...++..+.. ......+.|..       +| .++++.-..+.|...++..               
T Consensus       246 ~~~~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~---------------  308 (353)
T 2g8s_A          246 GFKIPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNG---------------  308 (353)
T ss_dssp             SSCCTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEET---------------
T ss_pred             CCccCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCC---------------
Confidence                          0112223332 23456777753       35 6677666677777777654               


Q ss_pred             cccccccce---eeccccceEEEEEeCCCCCceEEE-eeeCCeEEEeec
Q 018697          300 NQRANSLLN---SYSDYEDSVYGLAWSSREPWIFAS-LSYDGRVVVESV  344 (351)
Q Consensus       300 ~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~v~vw~~  344 (351)
                          +..+.   .+......+..+++.|+|. ++++ -..+|  +||.+
T Consensus       309 ----~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          309 ----DKVTEDGRILTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKV  350 (353)
T ss_dssp             ----TEEEEEEEESGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEE
T ss_pred             ----CeEeeeEEcccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEE
Confidence                21111   1122234689999999998 5554 32345  45554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.87  E-value=0.0052  Score=51.70  Aligned_cols=182  Identities=7%  Similarity=0.046  Sum_probs=103.4

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeec-----cccceeEEEecC--CCC-CcEEEEec--CCcEEEEEcCCCCCCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWS--SGR-HDKLVSID--EENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~--~~~-~~~~~~~~--d~~v~iwd~~~~~~~~~  158 (351)
                      .+|.|.++|..+..     .+.+.+. +.+     ..-....+.+.+  ++. +++++-..  +.+|.+|+++.......
T Consensus        81 ~~G~I~~~d~~~~~-----~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~  154 (355)
T 3sre_A           81 KSGKILLMDLNEKE-----PAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL  154 (355)
T ss_dssp             -CCEEEEEETTSSS-----CCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred             CCCeEEEEecCCCC-----CceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence            57889999976211     1112222 222     233566777755  343 33444322  57888988875443333


Q ss_pred             cccccccCcccceeeeEECCCCCcEEEee-----------------cCCeEEEEEcccCCcCceeecce--eEEEEcCCC
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAAT-----------------CESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTK  219 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~  219 (351)
                      .............+++.+.++|...++..                 ..|.|..+|.  ++ ...+..+-  .+.++|+|+
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC
Confidence            32222212234678899999888666543                 1245555554  32 22222122  899999999


Q ss_pred             CCcEEEEecCCCeEEEEecccCCcc--eeEeeCCCCceeEEEecC-CCCCeEEEeeCCC-eEEEEE
Q 018697          220 KKHLLVTAADESGIHLWDLRMLKAP--IQELPGHTHWTWAVCCNP-EYDGFILSAGTDS-TVNLWL  281 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg-~i~iwd  281 (351)
                      ++.++++-+..+.|+.|++...+..  .+.+. .....-.+++.+ +| .+.+++..++ .|..|+
T Consensus       232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTG-DLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTC-CEEEEEESCHHHHHSCC
T ss_pred             CCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCC-cEEEEecCCceEEEEEC
Confidence            9866776777889999998743321  12332 245667888998 58 7766665442 343343

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.81  E-value=0.014  Score=57.34  Aligned_cols=271  Identities=11%  Similarity=0.161  Sum_probs=151.0

Q ss_pred             CCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCC
Q 018697           26 TDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL  105 (351)
Q Consensus        26 ~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~  105 (351)
                      -++.++++-....++.+++.++++...+...  +    .+-.--+.-.+|..+.++.-     ...++.|+|++      
T Consensus        32 ~eSDkyicvre~~~~~~~vvIidl~~~~~~~--r----rpi~AdsAIMnP~~~iiALr-----ag~~lQiFnl~------   94 (1630)
T 1xi4_A           32 MESDKFICIREKVGEQAQVVIIDMNDPSNPI--R----RPISADSAIMNPASKVIALK-----AGKTLQIFNIE------   94 (1630)
T ss_pred             eecCceEEEEecCCCCceEEEEECCCCCCcc--c----ccccchhhccCCCcceEEEe-----cCCeEEEeehH------
Confidence            3455566655555666788888888754321  1    11122244567876555442     35689999998      


Q ss_pred             CCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEE
Q 018697          106 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA  185 (351)
Q Consensus       106 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  185 (351)
                         ....+....- ..+|.-=.|-.... +.+++  +..|+-|++.....+.+++..+..--...|..-..+++.++++.
T Consensus        95 ---~k~klks~~~-~e~VvfWkWis~~~-l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l  167 (1630)
T 1xi4_A           95 ---MKSKMKAHTM-TDDVTFWKWISLNT-VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLL  167 (1630)
T ss_pred             ---Hhhhhccccc-CCCceEEEecCCCe-eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEE
Confidence               3344444432 34566667766655 23333  47899999976445555554442212346777788888888775


Q ss_pred             ee-------cCCeEEEEEcccCCcCceeecce---eEEEEc--CCCCCcEEEEecC---CCeEEEEecccC--Ccc-e--
Q 018697          186 AT-------CESSVQFWDLRSMGKTNSIEHAH---VRNVDY--DTKKKHLLVTAAD---ESGIHLWDLRML--KAP-I--  245 (351)
Q Consensus       186 ~~-------~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~--~~~~~~~l~~~~~---dg~i~i~d~~~~--~~~-~--  245 (351)
                      .+       -.|.+.+|..+.+. ...+. +|   ...+..  ++....+++.+..   .+.++|.++...  +.+ .  
T Consensus       168 ~gi~~~~~~v~G~mQLyS~er~~-sQ~ie-gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k  245 (1630)
T 1xi4_A          168 TGISAQQNRVVGAMQLYSVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK  245 (1630)
T ss_pred             EeeccCCCcccceeeeeeccccc-chhhh-HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc
Confidence            54       24788899887543 22232 44   212222  1222224433322   368999998653  111 1  


Q ss_pred             ---eEeeC---CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEE
Q 018697          246 ---QELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG  319 (351)
Q Consensus       246 ---~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  319 (351)
                         ..+-.   -......+..++.. .++..-+.-|.|.++|+.+                   +.++..-+-...+|.-
T Consensus       246 k~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t-------------------~~~i~~~ris~~~iF~  305 (1630)
T 1xi4_A          246 KAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET-------------------GTCIYMNRISGETIFV  305 (1630)
T ss_pred             ccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEeccc-------------------chhhhhccccCCceEE
Confidence               11111   12233456677776 7888889999999999999                   6666555544445544


Q ss_pred             EEeCCCCCceEEEeeeCCeEEEee
Q 018697          320 LAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       320 ~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .+-+..... ++.....|.|.--.
T Consensus       306 ~~~~~~~~g-~~~vnr~G~vl~v~  328 (1630)
T 1xi4_A          306 TAPHEATAG-IIGVNRKGQVLSVC  328 (1630)
T ss_pred             eccCCCCCc-eEEEcCCceEEEEE
Confidence            443333222 33333455444333

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.57  E-value=0.014  Score=49.24  Aligned_cols=144  Identities=15%  Similarity=0.044  Sum_probs=80.3

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeeeEECCC---CCcEEEeec-C-----C
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPH---DVNAVAATC-E-----S  190 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~  190 (351)
                      .....++|.|+|+  ++++..++.|.+++ . +. ...+... ....-......++++|+   +..|+++.. .     +
T Consensus        31 ~~P~~ia~~pdG~--l~V~e~~g~I~~i~-~-g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGG--MLIAERPGRIRLFR-E-GR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSC--EEEEETTTEEEEEE-T-TE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCe--EEEEeCCCeEEEEE-C-CC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3467899999998  56665569999998 3 22 1111100 00111236789999998   556665543 2     6


Q ss_pred             eEEEEEcccCC-----cCc-eee----cce-eEEEEcCCCCCcEEEEecC-------------CCeEEEEecccC---C-
Q 018697          191 SVQFWDLRSMG-----KTN-SIE----HAH-VRNVDYDTKKKHLLVTAAD-------------ESGIHLWDLRML---K-  242 (351)
Q Consensus       191 ~i~iwd~~~~~-----~~~-~~~----~~~-v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---~-  242 (351)
                      .|..++...+.     .+. .+.    ..| ...++|.|+|. ++++.+.             .|.|.-++....   . 
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            78788876431     111 122    123 67899999996 6665432             246666665420   0 


Q ss_pred             -------cceeEe-eCCCCceeEEEecC-CCCCeEEEee
Q 018697          243 -------APIQEL-PGHTHWTWAVCCNP-EYDGFILSAG  272 (351)
Q Consensus       243 -------~~~~~~-~~~~~~v~~~~~~~-~~~~~l~s~~  272 (351)
                             .....+ .++ .....++|+| ++ .++++-.
T Consensus       185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g-~l~v~d~  221 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTG-ELFSSEH  221 (352)
T ss_dssp             TTTTCTTSCTTEEEECC-SEECCCEECTTTC-CEEEEEE
T ss_pred             cccCCCCCCccEEEEcC-CCcccEEEECCCC-CEEEEEc
Confidence                   001111 233 3357899999 55 5555443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.55  E-value=0.018  Score=48.61  Aligned_cols=143  Identities=16%  Similarity=0.032  Sum_probs=80.1

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeeeEECCC---CCcEEEeec----C--
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPH---DVNAVAATC----E--  189 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~~l~~~~~----d--  189 (351)
                      -.....++|.|+++  ++++..++.|++++.. +.  ..+... ....-......++++|+   +..|+++..    +  
T Consensus        28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~~-G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR--YLVTERPGRLVLISPS-GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTE--EEEEETTTEEEEECSS-CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCe--EEEEeCCCEEEEEeCC-Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            34567899999998  6666556999988733 22  111110 00111235789999997   556665543    2  


Q ss_pred             --CeEEEEEcccCC-------cC-ceee--cce-eEEEEcCCCCCcEEEEecC-------------CCeEEEEecccCC-
Q 018697          190 --SSVQFWDLRSMG-------KT-NSIE--HAH-VRNVDYDTKKKHLLVTAAD-------------ESGIHLWDLRMLK-  242 (351)
Q Consensus       190 --~~i~iwd~~~~~-------~~-~~~~--~~~-v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-  242 (351)
                        ..|..|+.....       .+ ..+.  ..| ...++|.|+|. ++++.+.             .|.|.-++... . 
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~  180 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEG-RP  180 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCC-CC
Confidence              567777766431       11 1122  123 67899999997 6665332             24566666542 1 


Q ss_pred             -------cceeEeeCCCCceeEEEecC-CCCCeEEEe
Q 018697          243 -------APIQELPGHTHWTWAVCCNP-EYDGFILSA  271 (351)
Q Consensus       243 -------~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~  271 (351)
                             ....-..++. ....++|+| ++ .++++-
T Consensus       181 p~~npf~~~~i~a~G~r-np~Gla~d~~~g-~l~v~d  215 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGHR-NPQGIDWHRASG-VMVATE  215 (354)
T ss_dssp             CTTSSSTTCCEEEECCS-CCCEEEECTTTC-CEEEEE
T ss_pred             CCCCCCCCCcEEEEccC-CcceEEEeCCCC-CEEEEe
Confidence                   0111112343 346899999 56 555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.49  E-value=0.019  Score=48.96  Aligned_cols=151  Identities=9%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeec--CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCC-C--cceee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFS--HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS-P--QLERI  113 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~-~--~~~~~  113 (351)
                      ..++.|++..+.+... ........  --..|..+..+|+|.+|+..     .+..|.|-.++........ .  ..-..
T Consensus        38 a~~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-----g~~~V~Vv~LP~~~~~~~~~~~~~~~q~  111 (452)
T 3pbp_A           38 IQDNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISSTSGDLLCLF-----NDNEIFVMEVPWGYSNVEDVSIQDAFQI  111 (452)
T ss_dssp             EETTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECTTSSEEEEE-----CSSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred             EECCEEEEEECCCCCc-ceEEecCcccccCceeEEEECCCCCEEEEe-----cCCeEEEEEecCccccCcccccccccce
Confidence            3578899888887543 32222222  12368889999999988886     5668999988832211111 0  00112


Q ss_pred             eeeec------cccceeEEEecCCCCC--cEEEEecCCcEEEEEcCCCCCCccccccc-----ccCcccceeeeEECCCC
Q 018697          114 AALDA------HVGKINCVLWWSSGRH--DKLVSIDEENIFLWSLDCSNKNAQVQSKQ-----SSGMLHYLSGGAWDPHD  180 (351)
Q Consensus       114 ~~~~~------h~~~v~~~~~~~~~~~--~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  180 (351)
                      +.+..      ...+|..+.|+|-+..  .+++-..|+.|++||+.........+...     .......+.+++|.+++
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~  191 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG  191 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence            23322      2567999999996532  35555779999999998633211111111     11223578899999987


Q ss_pred             CcEEEee--cCCeEEEE
Q 018697          181 VNAVAAT--CESSVQFW  195 (351)
Q Consensus       181 ~~l~~~~--~d~~i~iw  195 (351)
                      -.|.+.+  .+|.|+-.
T Consensus       192 lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          192 LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCEEEEECTTSCEEEEE
T ss_pred             cEEEEEecCCCCCEEEE
Confidence            7777755  77888643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.47  E-value=0.019  Score=44.25  Aligned_cols=101  Identities=8%  Similarity=-0.061  Sum_probs=61.9

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---------eEEEEcCCCCCcEEEEecCCCeEEEEeccc
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWDLRM  240 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  240 (351)
                      .+..++|+|++. |.+. .+|.++-.+..+.....=+....         ...+.|.|+|. +.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCc
Confidence            678999999777 4444 78887777765433221111111         37899999997 5554  669998887543


Q ss_pred             CCcc-----eeEe-eCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          241 LKAP-----IQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       241 ~~~~-----~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      ....     -..+ ..--..+..|.|.|+| .+.+..  |+.+.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence            2210     0111 1111467899999999 555555  77743

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.30  E-value=0.067  Score=45.84  Aligned_cols=234  Identities=12%  Similarity=0.149  Sum_probs=134.0

Q ss_pred             ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018697           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~  158 (351)
                      ..+++....+.+..|.|-|+..       +. ...+.--..+    +.-.+|..+  +++--...++.|+|+++..+...
T Consensus        36 kyicVrE~~~~~~~vvIiDl~~-------~~-~~~rrpi~Ad----sAIMnP~~~--iiALrag~~lQiFnle~K~klks  101 (494)
T 1bpo_A           36 KFICIREKVGEQAQVVIIDMND-------PS-NPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMKA  101 (494)
T ss_dssp             TEEEEEECCTTCCEEEEEETTS-------TT-SCEEEECCCS----EEEECSSSS--CEEEEETTEEEEEETTTTEEEEE
T ss_pred             ceEEEEecCCCCCeEEEEECCC-------CC-cceecccccc----eeeeCCCCc--EEEEecCCeEEEEchHHhhhhcc
Confidence            4445544445555788888872       11 1211111222    344678777  44443468999999997544433


Q ss_pred             cccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-CcCceeecce------eEEEEcCCCCCcEEEEec---
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHAH------VRNVDYDTKKKHLLVTAA---  228 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~------v~~~~~~~~~~~~l~~~~---  228 (351)
                      .....      .|.--.|-.+ +.|+..+ +..|+-|++... .+...+....      |..-..+++.+.++++|-   
T Consensus       102 ~~~~e------~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  173 (494)
T 1bpo_A          102 HTMTD------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (494)
T ss_dssp             EECSS------CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred             eecCC------CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence            33222      5665667543 3344443 568999999753 3434444211      788888999996666554   


Q ss_pred             ---CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC--CCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                         -.|.+.+|..+.  +.-+.+++|...-..+......  ..+++-+..   .+.++|-++.......        .+.
T Consensus       174 ~~~v~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--------~~f  243 (494)
T 1bpo_A          174 QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--------QPF  243 (494)
T ss_dssp             TTEEEEEEEEEESTT--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--------CCC
T ss_pred             CCcccceEEEeeccc--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--------CCc
Confidence               247899999874  4567788887666555443211  134444443   2689998886521000        000


Q ss_pred             ccccccceeec---cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          301 QRANSLLNSYS---DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       301 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                        ..+.+..+-   ...+-..++..++... ++..-+.-|.|.+||+++-
T Consensus       244 --~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          244 --PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             --CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred             --cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccc
Confidence              011111111   1123345677888776 7888888899999998763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.25  E-value=0.068  Score=44.79  Aligned_cols=240  Identities=9%  Similarity=0.048  Sum_probs=122.9

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee----eccccceeEEEecCC---CCCcE
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL----DAHVGKINCVLWWSS---GRHDK  136 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~---~~~~~  136 (351)
                      .-...+.|+|.|++..+++-    -..+.|++++...       .....+..+    .........|+++|+   +..++
T Consensus        30 gL~~P~~ia~~pdG~llVte----r~~G~I~~v~~~~-------g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSS----RDEATITRVDAKT-------GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             CCCCceEEEEcCCCcEEEEE----ecCCEEEEEECCC-------CcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence            34567899999999766653    2378888886431       111222222    223556789999996   34333


Q ss_pred             EEE--ecCCcEEEEEcCCCC----C---CcccccccccCcccceeeeEECCCCCcEEEeec-------------CCeEEE
Q 018697          137 LVS--IDEENIFLWSLDCSN----K---NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-------------ESSVQF  194 (351)
Q Consensus       137 ~~~--~~d~~v~iwd~~~~~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i  194 (351)
                      ++-  ..++.|.-|.+....    .   ...++........+....+.|.|++...++.+.             .|.|.-
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR  178 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR  178 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence            321  234566666665421    1   111111111112225667999999976666442             245555


Q ss_pred             EEcccCC-------cCceeecce--eEEEEcCCCCCcEEEEec-CCCeEEEEecccC-----------------CcceeE
Q 018697          195 WDLRSMG-------KTNSIEHAH--VRNVDYDTKKKHLLVTAA-DESGIHLWDLRML-----------------KAPIQE  247 (351)
Q Consensus       195 wd~~~~~-------~~~~~~~~~--v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-----------------~~~~~~  247 (351)
                      .+....-       ....+..++  ...++|+|++. ++++-. .++.=.|--++..                 ..++..
T Consensus       179 i~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          179 MTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             ECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             EeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            5544220       112233344  78999999887 554332 2322222222211                 113333


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP  327 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  327 (351)
                      +..+......++|.. + .++...-..+.|....+.....               ..+....+.+....+.+|+..|||.
T Consensus       258 ~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~---------------~~~~e~~l~~~~gR~~dv~~~pDG~  320 (347)
T 3das_A          258 WSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAA---------------AADPQAFLEGEYGRLRTVAPAGGDK  320 (347)
T ss_dssp             ECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEE---------------SSCCEEESTTTSSCEEEEEEEETTE
T ss_pred             cCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCce---------------ecceEEeecCCCCCccEEEECCCCc
Confidence            433323456777763 4 4555554455555555543100               0111122333345789999999998


Q ss_pred             ceEEEe
Q 018697          328 WIFASL  333 (351)
Q Consensus       328 ~~l~s~  333 (351)
                       ++++.
T Consensus       321 -lyv~t  325 (347)
T 3das_A          321 -LWLVT  325 (347)
T ss_dssp             -EEEEE
T ss_pred             -EEEEE
Confidence             44443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.08  E-value=0.12  Score=44.28  Aligned_cols=146  Identities=8%  Similarity=0.010  Sum_probs=91.8

Q ss_pred             cCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcC-----
Q 018697          129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-----  203 (351)
Q Consensus       129 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----  203 (351)
                      +.++..+++  ..++.||.-++.... ..+.+.....-.-..+..+..+|+|++|+..+ +..|.|..+..+...     
T Consensus        29 ~~n~t~i~~--a~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTRIVF--IQDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTEEEE--EETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCEEEE--EECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            445553222  345788888887533 23333222100111577899999999887765 568888888733211     


Q ss_pred             -------ceeecc------e--eEEEEcCCCCCc--EEEEecCCCeEEEEeccc-CCcceeEee---------CCCCcee
Q 018697          204 -------NSIEHA------H--VRNVDYDTKKKH--LLVTAADESGIHLWDLRM-LKAPIQELP---------GHTHWTW  256 (351)
Q Consensus       204 -------~~~~~~------~--v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~---------~~~~~v~  256 (351)
                             ..+..+      .  |..+.|+|-+..  .|++-..|+.|++||+.. ...|. .+.         .....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                   112211      2  899999997653  788899999999999985 22233 332         2235688


Q ss_pred             EEEecCCCCCeEEEee--CCCeEEEE
Q 018697          257 AVCCNPEYDGFILSAG--TDSTVNLW  280 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~--~dg~i~iw  280 (351)
                      +++|.+++ ..|...+  ..|-|+-.
T Consensus       184 S~~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          184 DLEFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCC-cEEEEEecCCCCCEEEE
Confidence            99999977 7777755  77877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.98  E-value=0.16  Score=44.40  Aligned_cols=112  Identities=8%  Similarity=-0.072  Sum_probs=59.8

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec------cccceeEEEecCC---CCCc
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA------HVGKINCVLWWSS---GRHD  135 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~---~~~~  135 (351)
                      -...+.|+|.|+++.+++-    ...+.|.+++...       .....+..+..      .......|+|+|+   +..+
T Consensus        26 l~~P~~~a~~pdG~l~V~e----~~gg~I~~~~~~~-------g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTE----RATGKILRVNPES-------GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CCCceEEEEcCCCcEEEEE----cCCCEEEEEECCC-------CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            3466799999999866663    2223577666431       11222222221      2456789999996   5544


Q ss_pred             EEEEec------------CCcEEEEEcCCCCC----CcccccccccCcccceeeeEECCCCCcEEEee
Q 018697          136 KLVSID------------EENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       136 ~~~~~~------------d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                      +++.+.            ...|.-+++.....    ...++........+....++|.|++.+.++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            444442            23566666543211    11111111111123578899999998666544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.97  E-value=0.13  Score=42.88  Aligned_cols=188  Identities=6%  Similarity=-0.012  Sum_probs=98.4

Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      ...+.+|.|.+.+.  .++.+..+.|  |....+.+...............+.++.+.+ + .+++++..+.|.. ....
T Consensus        35 ~~~~~~v~~~~~~~--~~~~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDRHH--GWLVGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSSSC--EEEEETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESST
T ss_pred             CCcEEEEEECCCCc--EEEEcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCC
Confidence            34688998887666  4445566755  3333333332222211111123688888876 3 4555566665543 2233


Q ss_pred             CCcCceeec-----ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe-eCCCCceeEEEecCCCCCeEEEeeC
Q 018697          200 MGKTNSIEH-----AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       200 ~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      ++.-.....     ..+..+.+.+++. +++.+ .++.|.  -....++.-... ..+...+..+.+.|++ .+++.+..
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~~  182 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSSR  182 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEETT
T ss_pred             CCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEECC
Confidence            332222111     1266677766665 55555 455442  222223222222 2445678899999988 77776654


Q ss_pred             CCeEEEEEc--CCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEe
Q 018697          274 DSTVNLWLV--STSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVE  342 (351)
Q Consensus       274 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw  342 (351)
                      .+..+-+|-  .+                   .+.+.  ......+..+.+.+++. ++ .++.+|.+++.
T Consensus       183 G~~~~S~d~gG~t-------------------W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s  230 (327)
T 2xbg_A          183 GSFYSTWEPGQTA-------------------WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFS  230 (327)
T ss_dssp             SSEEEEECTTCSS-------------------CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEE
T ss_pred             CcEEEEeCCCCCc-------------------eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEe
Confidence            444444443  22                   33332  12344678888988886 44 44456777665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.90  E-value=0.097  Score=40.43  Aligned_cols=149  Identities=5%  Similarity=-0.049  Sum_probs=79.8

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc---ccCcccceeeeEECCCCCcEEEeecCCeEEEEEc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL  197 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  197 (351)
                      ..+..++|+|++.  +.+. .+|.++-.+..+.....-.-...   ..+.. ...++.|.|++.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~--LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGE--LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCcc--EEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999888  4444 67776665554322111111111   00111 2478899998876666  6699988876


Q ss_pred             ccCCcC------ceeec---ceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----ceeEee-CCCCceeEEEecC
Q 018697          198 RSMGKT------NSIEH---AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----PIQELP-GHTHWTWAVCCNP  262 (351)
Q Consensus       198 ~~~~~~------~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~-~~~~~v~~~~~~~  262 (351)
                      .+....      ..+..   ..+..|.+.|+|. +.++.  |+.++-........     ....+- ..-..-.-+.|.|
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            432211      11111   1189999999997 55544  77754322221010     011111 2222344567899


Q ss_pred             CCCCeEEEeeCCCeEEEEEcC
Q 018697          263 EYDGFILSAGTDSTVNLWLVS  283 (351)
Q Consensus       263 ~~~~~l~s~~~dg~i~iwd~~  283 (351)
                      ++ .+.+..  ++  ++|...
T Consensus       192 ~G-~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          192 VG-TLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             TS-CEEEEE--TT--EEEEES
T ss_pred             CC-cEEEEe--CC--eEEecC
Confidence            88 665555  66  455444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.86  E-value=0.14  Score=41.80  Aligned_cols=139  Identities=9%  Similarity=0.009  Sum_probs=68.1

Q ss_pred             cEEEEecC-----CcEEEEEcCCCCCC-cccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccCCcC
Q 018697          135 DKLVSIDE-----ENIFLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKT  203 (351)
Q Consensus       135 ~~~~~~~d-----~~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~  203 (351)
                      +++.++.+     ..+.+||+.+.... ..... ...........+.+  ++..++.|+.+     ..+.+||+.+.+-.
T Consensus        65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            56666543     46889998865410 11111 11111111222222  45666666533     46888998765422


Q ss_pred             c--eeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEecccCCcceeEeeCCC---CceeEEEecCCCCCeEEEe
Q 018697          204 N--SIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPGHT---HWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       204 ~--~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~  271 (351)
                      .  .+....  ...+.+  ++. +++.|+.+     ..+.+||+.+ . .-..+....   .....+.+  ++ .+++.|
T Consensus       142 ~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~-~-~W~~~~~~p~~r~~~~~~~~--~~-~i~v~G  213 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHT-G-HWTNVTPMATKRSGAGVALL--ND-HIYVVG  213 (301)
T ss_dssp             EEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE--TT-EEEEEC
T ss_pred             ECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCC-C-cEEeCCCCCcccccceEEEE--CC-EEEEEe
Confidence            1  111111  222222  454 77777654     4688999875 2 222222111   11122222  44 677777


Q ss_pred             eCC-----CeEEEEEcCC
Q 018697          272 GTD-----STVNLWLVST  284 (351)
Q Consensus       272 ~~d-----g~i~iwd~~~  284 (351)
                      +.+     ..+.+||+.+
T Consensus       214 G~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             CBCSSSBCCCEEEEETTT
T ss_pred             CCCCCcccceEEEEeCCC
Confidence            764     4688899876

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.78  E-value=0.079  Score=44.69  Aligned_cols=102  Identities=8%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCC--cCcee----ecc-e-eEEEEcCCC---CCcEEEEecC-------CC
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSI----EHA-H-VRNVDYDTK---KKHLLVTAAD-------ES  231 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~----~~~-~-v~~~~~~~~---~~~~l~~~~~-------dg  231 (351)
                      ....++|.|+++.|+++...|.|++++.....  .+..+    ... . ...++++|+   +..++++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            56789999999856666778999999854221  11111    111 1 789999996   4435554332       23


Q ss_pred             eEEEEecccCCc---ceeE-eeC------CCCceeEEEecCCCCCeEEEee
Q 018697          232 GIHLWDLRMLKA---PIQE-LPG------HTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       232 ~i~i~d~~~~~~---~~~~-~~~------~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      .|..|++.....   .... +..      .......++|.|+| .++++.+
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G  148 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALG  148 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEEC
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEEC
Confidence            566666643111   1111 111      11224679999999 6655543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.61  E-value=0.27  Score=43.00  Aligned_cols=102  Identities=9%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeec-------ce-eEEEEcCCC---CCcEEEEecC-------
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEH-------AH-VRNVDYDTK---KKHLLVTAAD-------  229 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~-------~~-v~~~~~~~~---~~~~l~~~~~-------  229 (351)
                      ...+++|.|+++.+++-...+.|++++..+++...  .+..       .. +..|+|+|+   +..++++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            56799999999855543333478888765443211  1110       12 779999995   4434444332       


Q ss_pred             -----CCeEEEEecccCC------ccee-Eee-CCCCceeEEEecCCCCCeEEEee
Q 018697          230 -----ESGIHLWDLRMLK------APIQ-ELP-GHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       230 -----dg~i~i~d~~~~~------~~~~-~~~-~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                           ...|.-|+.....      +.+. .+. ........|+|.|+| .++++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                 2356666654211      1111 122 112357899999999 6655544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.56  E-value=0.24  Score=40.52  Aligned_cols=138  Identities=9%  Similarity=0.024  Sum_probs=67.0

Q ss_pred             cEEEEecC----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC------CeEEEEEcccCCc--
Q 018697          135 DKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGK--  202 (351)
Q Consensus       135 ~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~--  202 (351)
                      +++.++.+    ..+.+||+.+..-  ...... .........+.+  ++..++.|+.+      ..+.+||+.+.+-  
T Consensus        58 lyv~GG~~~~~~~~~~~~d~~~~~W--~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           58 VYILGGSQLFPIKRMDCYNVVKDSW--YSKLGP-PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             EEEECCBSSSBCCEEEEEETTTTEE--EEEECC-SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCCcceEEEEeCCCCeE--EECCCC-CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56666543    6788888875421  111111 111111222222  45666666644      4688899876532  


Q ss_pred             Cceeecce--eEEEEcCCCCCcEEEEecC---------CCeEEEEecccCCcceeEeeCCCCc--eeEEEecCCCCCeEE
Q 018697          203 TNSIEHAH--VRNVDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHW--TWAVCCNPEYDGFIL  269 (351)
Q Consensus       203 ~~~~~~~~--v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~  269 (351)
                      +..+....  ...+.+  ++. +++.|+.         -..+.+||+.+ . .-..+.....+  -.++... ++ .+++
T Consensus       133 ~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~-~~-~i~v  205 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPAT-E-TWTELCPMIEARKNHGLVFV-KD-KIFA  205 (306)
T ss_dssp             ECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTT-T-EEEEECCCSSCCBSCEEEEE-TT-EEEE
T ss_pred             CCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCC-C-eEEECCCccchhhcceEEEE-CC-EEEE
Confidence            11111111  222222  454 6776763         34588999875 3 22223211111  1112222 44 6777


Q ss_pred             EeeCC-----CeEEEEEcCC
Q 018697          270 SAGTD-----STVNLWLVST  284 (351)
Q Consensus       270 s~~~d-----g~i~iwd~~~  284 (351)
                      .|+.+     ..+.+||+.+
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTT
T ss_pred             EeCCCCCCCCceEEEeeCCC
Confidence            77653     3578888876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.51  E-value=0.058  Score=44.36  Aligned_cols=137  Identities=8%  Similarity=0.049  Sum_probs=73.1

Q ss_pred             cCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC--------------CeEE
Q 018697          129 WSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------------SSVQ  193 (351)
Q Consensus       129 ~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~  193 (351)
                      ++++..+.++. ..++.|+..+.+.  .....+...      .  +--+++++.+|+.....              ..|+
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~------~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy   91 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND------T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLC   91 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE------E--EEEEEECSSEEEEEEECC------CCSSCCSEEEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC------c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEE
Confidence            45666655554 3356666555542  222222211      2  23457788888877542              4677


Q ss_pred             EEEcccCCcCceeecceeEEEEcCCCCCcEEEEe---cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEE
Q 018697          194 FWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTA---ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       194 iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      ..++..++. ..+...  ....|++++..++.+-   ..+..|+..++.  +.....+..+..    .+++|+++.+..+
T Consensus        92 ~i~~dg~~~-~~l~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t  162 (302)
T 3s25_A           92 RIKRNGHGS-TVLDPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYN  162 (302)
T ss_dssp             EEETTSCCC-EEEECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred             EEeCCCCcc-eEeecC--CccEEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeCCCc----eEeeEECCEEEEE
Confidence            777776542 222212  2235677888555444   234455555555  334555554433    4578888444445


Q ss_pred             eeCCCeEEEEEcCC
Q 018697          271 AGTDSTVNLWLVST  284 (351)
Q Consensus       271 ~~~dg~i~iwd~~~  284 (351)
                      ......|..-++..
T Consensus       163 ~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          163 NPKNGQLYRYDTAS  176 (302)
T ss_dssp             CTTTCCEEEEETTT
T ss_pred             eCCCceEEEEECCC
Confidence            44456777777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.49  E-value=0.22  Score=40.67  Aligned_cols=137  Identities=9%  Similarity=-0.008  Sum_probs=65.4

Q ss_pred             cEEEEecC-----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccCCcC-
Q 018697          135 DKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKT-  203 (351)
Q Consensus       135 ~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~-  203 (351)
                      +++.++.+     ..+.+||+.+..  ....... .........+.+  ++..++.|+.+     ..+.+||+.+.+-. 
T Consensus        64 lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           64 VFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANM-RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             EEEESCBCSSSBCCCEEEEETTTTE--EEEECCC-SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEeCcCCCccccceEEECCCCCc--eeeCCCC-CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56666543     458888887532  1111111 111111222222  45666666644     35778888765321 


Q ss_pred             -ceeecce--eEEEEcCCCCCcEEEEecCC-------CeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEE
Q 018697          204 -NSIEHAH--VRNVDYDTKKKHLLVTAADE-------SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       204 -~~~~~~~--v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s  270 (351)
                       ..+....  ...+.+  ++. +++.|+.+       ..+.+||+.+ .+ -..+..   .......+.+  ++ .+++.
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~  210 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVGVL--NN-LLYAV  210 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred             cCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEEEE--CC-EEEEE
Confidence             1111111  222222  454 67777642       3588899875 21 222211   1111122222  44 67777


Q ss_pred             eeCCC-----eEEEEEcCC
Q 018697          271 AGTDS-----TVNLWLVST  284 (351)
Q Consensus       271 ~~~dg-----~i~iwd~~~  284 (351)
                      |+.++     .+.+||..+
T Consensus       211 GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTT
T ss_pred             CCCCCCcccceEEEEeCCC
Confidence            77643     688888876

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.33  E-value=0.94  Score=44.70  Aligned_cols=132  Identities=13%  Similarity=0.140  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---eeEEEEcCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---HVRNVDYDT  218 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~v~~~~~~~  218 (351)
                      .|.|.+|++.. .+...+....   ....+++++-- +| +|+++- ..+|++|++...+.+. ....   ++..+....
T Consensus       863 ~Gri~vf~v~~-~kL~lv~~~~---v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~  934 (1158)
T 3ei3_A          863 QGRIVVFQYSD-GKLQTVAEKE---VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKT  934 (1158)
T ss_dssp             CEEEEEEEEET-TEEEEEEEEE---ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEE
T ss_pred             ceEEEEEEEEC-CEEEEEEEEE---cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEec
Confidence            47899999973 2222222222   23477777643 24 455543 5789999998665333 2211   122222222


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      .+. +++.|..-..|.++..+.....+..+.  .+..+++++.|-.++  .++.+..+|.|.+.....
T Consensus       935 ~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          935 KGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECT
T ss_pred             cCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCC
Confidence            454 678888777787776654333344443  355678888887554  677789999999988765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.30  E-value=0.97  Score=44.58  Aligned_cols=212  Identities=12%  Similarity=0.088  Sum_probs=99.5

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCC------CceEEEEeecCCcceEEEEEcccccCCCCCCcceeee
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD------QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA  114 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~------~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  114 (351)
                      .+.+..+.+.+.  .+.......-+..|.|+++.|..      +.+++++   -.|++++|++++         ..+.+.
T Consensus       531 g~~l~~fel~~~--~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~---~~d~tv~I~sL~---------~l~~~~  596 (1158)
T 3ei3_A          531 GRALYYLQIHPQ--ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL---WTDISARILKLP---------SFELLH  596 (1158)
T ss_dssp             TTEEEEEEEETT--EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE---TTTTEEEEEETT---------TCCEEE
T ss_pred             CCEEEEEEeeCC--ceeeecccCCCCceEEEEeecCCCCcccccEEEEEE---CCCCEEEEEECC---------CCCeEE
Confidence            356777777652  23322233446789999997642      3555542   348999999997         333333


Q ss_pred             eeec-cccceeEEEecC-CCCCcEEEEecCCcEEEEEcCCCC-CCcccccccccCcccceeeeEECCCCCcEEEeecCCe
Q 018697          115 ALDA-HVGKINCVLWWS-SGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS  191 (351)
Q Consensus       115 ~~~~-h~~~v~~~~~~~-~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  191 (351)
                      ...- ......++.+.. .+...++++-.||.+.-+.++... ....... ..-| ..++.-..+...+..-+.+..+..
T Consensus       597 ~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~-~~LG-~~pv~L~~~~~~~~~~V~a~s~rp  674 (1158)
T 3ei3_A          597 KEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK-VTLG-TQPTVLRTFRSLSTTNVFACSDRP  674 (1158)
T ss_dssp             EEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEE-EECC-SSCCEEEEEESSSCEEEEEESSSC
T ss_pred             EEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccccee-EEcC-CCceEEEEEeeCCceeEEEECCCC
Confidence            2211 112233333322 223236667778988777665311 1111100 1111 123433334333333333333443


Q ss_pred             EEEEEcccCCcCce-eecce-eEEEEcCCCC-CcEEEEecCCCeEEEEecccCCc-ceeEeeCCCCceeEEEecCCCCCe
Q 018697          192 VQFWDLRSMGKTNS-IEHAH-VRNVDYDTKK-KHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGF  267 (351)
Q Consensus       192 i~iwd~~~~~~~~~-~~~~~-v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  267 (351)
                      ..++.-+ ++.... +.... -....|+... +.-++..+ ++.++|..+....+ .++++. -...+..++++|.. ..
T Consensus       675 ~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~-~~  750 (1158)
T 3ei3_A          675 TVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVS-QC  750 (1158)
T ss_dssp             EEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGG-TE
T ss_pred             EEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCC-CE
Confidence            3344322 221111 11111 2233443221 11233333 45699988865332 233333 34678899999987 55


Q ss_pred             EEEee
Q 018697          268 ILSAG  272 (351)
Q Consensus       268 l~s~~  272 (351)
                      ++.+.
T Consensus       751 ~~v~~  755 (1158)
T 3ei3_A          751 FGVLS  755 (1158)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.24  E-value=0.39  Score=39.40  Aligned_cols=139  Identities=4%  Similarity=-0.086  Sum_probs=74.8

Q ss_pred             EEecCCCCCcEEEEecC-------------CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee----c
Q 018697          126 VLWWSSGRHDKLVSIDE-------------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT----C  188 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~  188 (351)
                      --+++++.++..+...+             ..|+..+++..+  ...+..        -.+..|+++++.|+...    .
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~--~~~l~~--------~~~~~~s~~g~~Iy~~~~~~~~  127 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG--STVLDP--------DPCIYASLIGNYIYYLHYDTQT  127 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC--CEEEEC--------SCEEEEEEETTEEEEEEESSSS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc--ceEeec--------CCccEEEEeCCEEEEEeecCCC
Confidence            34578888766555433             356666666432  222221        12236777888888765    3


Q ss_pred             CCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          189 ESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       189 d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                      +..|+..++... ....+....+  .+++|+++.++.+......|.+.++.. .. .+.+..  .... ..+.|++ .+|
T Consensus       128 ~~~Iy~~~~dGs-~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g-~~-~~~l~~--~~~~-~~~~P~g-~~i  198 (302)
T 3s25_A          128 ATSLYRIRIDGE-EKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTAS-QS-EALFYD--CNCY-KPVVLDD-TNV  198 (302)
T ss_dssp             CEEEEEEETTSC-CCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTT-TE-EEEEEC--SCEE-EEEEEET-TEE
T ss_pred             CceEEEEECCCC-CeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCC-CC-EEEEeC--CCcc-ceeeecC-CEE
Confidence            445666666533 3333332223  567888886666655567888888764 32 233322  2222 2356888 555


Q ss_pred             EEeeC-CC-eEEEEEcC
Q 018697          269 LSAGT-DS-TVNLWLVS  283 (351)
Q Consensus       269 ~s~~~-dg-~i~iwd~~  283 (351)
                      +-... ++ .|..-++.
T Consensus       199 y~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             EEEEGGGTTEEEEECSS
T ss_pred             EEEEcCCCcEEEEEECC
Confidence            54433 32 34444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.02  E-value=0.88  Score=45.34  Aligned_cols=234  Identities=12%  Similarity=0.152  Sum_probs=129.2

Q ss_pred             ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcc
Q 018697           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ  158 (351)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~  158 (351)
                      ..+++....+....|.|-|+..       +. .+.+.--...    +.-.+|..+  +++--...++.|+|+.+..+...
T Consensus        36 kyicvre~~~~~~~vvIidl~~-------~~-~~~rrpi~Ad----sAIMnP~~~--iiALrag~~lQiFnl~~k~klks  101 (1630)
T 1xi4_A           36 KFICIREKVGEQAQVVIIDMND-------PS-NPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMKA  101 (1630)
T ss_pred             ceEEEEecCCCCceEEEEECCC-------CC-Ccccccccch----hhccCCCcc--eEEEecCCeEEEeehHHhhhhcc
Confidence            4444443344555788888872       11 1111111112    233577776  55554468999999987555444


Q ss_pred             cccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC-CcCceeecc-----e-eEEEEcCCCCCcEEEEec---
Q 018697          159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHA-----H-VRNVDYDTKKKHLLVTAA---  228 (351)
Q Consensus       159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~---  228 (351)
                      .....      +|.--.|-.. +.|+..+ +..|+-|++... .+...+...     . |..-..+++.+.++++|-   
T Consensus       102 ~~~~e------~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          102 HTMTD------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             cccCC------CceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            33322      5666677643 3344433 568999999743 333333311     1 777788899986666554   


Q ss_pred             ---CCCeEEEEecccCCcceeEeeCCCCceeEEEec--CCCCCeEEEeeC---CCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                         -.|.+.+|..+.  +.-+.+++|......+...  +....+++-+..   .+.++|-++.......        .+.
T Consensus       174 ~~~v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~--------~~f  243 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--------QPF  243 (1630)
T ss_pred             CCcccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC--------CCC
Confidence               347899999874  3456667776655444432  211133333322   2688888886520000        000


Q ss_pred             ccccccceeecc---ccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          301 QRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       301 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .  .+.+..+..   ..+-..++..++... ++...+.-|.|.+||+.+-
T Consensus       244 ~--kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          244 P--KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             c--cccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccc
Confidence            0  111111111   122234677777766 7778888899999998763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.84  E-value=0.86  Score=39.90  Aligned_cols=112  Identities=7%  Similarity=-0.040  Sum_probs=58.7

Q ss_pred             cceeeeeeCCCCC-ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee---------ccccceeEEEecCC---C
Q 018697           66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD---------AHVGKINCVLWWSS---G  132 (351)
Q Consensus        66 ~~v~~i~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~---~  132 (351)
                      ...+.|+|.|++. +++++    ...|.|++++....   .   ....+..+.         ........|+|+|+   .
T Consensus        14 ~~P~~~a~~pdG~~rl~V~----er~G~i~~~~~~g~---~---~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL----EKEGYVKILTPEGE---I---FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE----ETTTEEEEECTTSC---B---CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             CCceEEEECCCCCeEEEEE----eCCceEEEEeCCCC---e---eeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            4567999999986 45554    36788888864310   0   001111111         12456789999996   3


Q ss_pred             CCcEEEEec--C----------CcEEEEEcCCCC--C-----CcccccccccCcccceeeeEECCCCCcEEEee
Q 018697          133 RHDKLVSID--E----------ENIFLWSLDCSN--K-----NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       133 ~~~~~~~~~--d----------~~v~iwd~~~~~--~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                      ..++++-+.  +          ..|.-|.+....  .     ...++.............|+|.||+.+.++.+
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence            333333232  1          144456665321  1     11112111112223567899999997666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.83  E-value=0.13  Score=45.54  Aligned_cols=72  Identities=10%  Similarity=0.015  Sum_probs=55.5

Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-----------c-eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEE
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------P-IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN  278 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  278 (351)
                      ...+.++|||+++++.|-.+.++.++|+++...           . +.+.+ -.......+|.++| ....|.--|..|.
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqvv  402 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQVV  402 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceEE
Confidence            778999999998888888899999999984211           1 11222 23456788999999 7777888899999


Q ss_pred             EEEcCC
Q 018697          279 LWLVST  284 (351)
Q Consensus       279 iwd~~~  284 (351)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999975

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.28  E-value=0.99  Score=36.91  Aligned_cols=98  Identities=9%  Similarity=0.011  Sum_probs=50.9

Q ss_pred             CCCcEEEeecC-----CeEEEEEcccCCc--Cceeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEecccCCcc
Q 018697          179 HDVNAVAATCE-----SSVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAP  244 (351)
Q Consensus       179 ~~~~l~~~~~d-----~~i~iwd~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  244 (351)
                      ++..++.|+.+     ..+.+||+.+.+-  +..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+ . .
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~-~-~  195 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPER-N-E  195 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTT-T-E
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCC-C-e
Confidence            45666666532     4688899876531  11222122  222333  454 77777654     4688999875 2 1


Q ss_pred             eeEeeC---CCCceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018697          245 IQELPG---HTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (351)
Q Consensus       245 ~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~  284 (351)
                      -..+..   .......+.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCC
Confidence            222211   1111122222  44 677777664     4588888876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.22  E-value=1.1  Score=36.87  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             CCCcEEEeecC--------CeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecC-C-----CeEEEEeccc
Q 018697          179 HDVNAVAATCE--------SSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAAD-E-----SGIHLWDLRM  240 (351)
Q Consensus       179 ~~~~l~~~~~d--------~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~  240 (351)
                      ++..++.|+.+        ..+.+||+.+.+  .+..+..+.  ...+.  -++. +++.|+. +     ..+.+||..+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDL-VYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTE-EEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCE-EEEEeCCCCCCcccceEEEEeCCC
Confidence            45555666532        468889987653  122222122  22222  2444 7777765 2     4688999875


Q ss_pred             CCcceeEeeCC---CCceeEEEecCCCCCeEEEeeCCC-----eEEEEEcCC
Q 018697          241 LKAPIQELPGH---THWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVST  284 (351)
Q Consensus       241 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~  284 (351)
                       . .-..+...   ...-..+.+  ++ .+++.|+.++     .+.+||..+
T Consensus       175 -~-~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          175 -F-EWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             -T-EEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred             -C-eEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence             2 12222211   111122222  44 6777777654     477888876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.02  E-value=1.3  Score=36.98  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=83.2

Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEec-CCcEEEEEcCCCCCCcccc--cccccCcccceeeeEECCC---CCcEEEe
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQ--SKQSSGMLHYLSGGAWDPH---DVNAVAA  186 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~l~~~  186 (351)
                      +..+...-...+.|+|.|+|.  ++++.. .|.|++++...+.. ..+.  ......-......++++|+   +..|++.
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~--llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGD--LLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSC--EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             eEEeecCCCCceEEEEcCCCc--EEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            334444445678999999998  566654 89999987654322 1111  0011111336789999995   4445543


Q ss_pred             -e--cCCeEEEEEcccCC----c---Cc----eee--cce-eEEEEcCCCCCcEEEEecC-------------CCeEEEE
Q 018697          187 -T--CESSVQFWDLRSMG----K---TN----SIE--HAH-VRNVDYDTKKKHLLVTAAD-------------ESGIHLW  236 (351)
Q Consensus       187 -~--~d~~i~iwd~~~~~----~---~~----~~~--~~~-v~~~~~~~~~~~~l~~~~~-------------dg~i~i~  236 (351)
                       +  .++.|.-|.+..+.    .   ..    .+.  ..| ...|+|.|+|. ++++.++             .|.|.-+
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEE
Confidence             2  34566666665421    1   11    111  123 67799999997 6665432             3455555


Q ss_pred             ecccC---Ccc---eeEee-CCCCceeEEEecCCCCCeEEE
Q 018697          237 DLRML---KAP---IQELP-GHTHWTWAVCCNPEYDGFILS  270 (351)
Q Consensus       237 d~~~~---~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~s  270 (351)
                      +....   ..+   ...+. +|. ....++|+|+| .++++
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~  218 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFAS  218 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEE
T ss_pred             eCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEE
Confidence            54421   000   11222 443 35689999987 55544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.91  E-value=1.2  Score=36.08  Aligned_cols=138  Identities=9%  Similarity=0.009  Sum_probs=67.3

Q ss_pred             CcEEEEecC-----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccCCcC
Q 018697          134 HDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGKT  203 (351)
Q Consensus       134 ~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~  203 (351)
                      .+++.++.+     ..+.+||+.+..-  ...... .........+.+  +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQW--SMLGDM-QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEE--EEEEEC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeE--EECCCC-CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            356666532     3688888875321  111111 111111122222  55666666543     46888998765321


Q ss_pred             --ceeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEe
Q 018697          204 --NSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       204 --~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~  271 (351)
                        ..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+ .+ ...+..   .......+.+  ++ .+++.|
T Consensus       189 ~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~-~i~v~G  260 (301)
T 2vpj_A          189 NVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATVL--RG-RLYAIA  260 (301)
T ss_dssp             EECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEEE--TT-EEEEEC
T ss_pred             eCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEEE--CC-EEEEEc
Confidence              1111111  222333  444 77777754     4689999875 32 222221   1111122222  45 677777


Q ss_pred             eCC-----CeEEEEEcCC
Q 018697          272 GTD-----STVNLWLVST  284 (351)
Q Consensus       272 ~~d-----g~i~iwd~~~  284 (351)
                      +.+     ..+.+||...
T Consensus       261 G~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          261 GYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             CBCSSSBEEEEEEEETTT
T ss_pred             CcCCCcccccEEEEcCCC
Confidence            765     3577788875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.77  E-value=2.7  Score=39.37  Aligned_cols=225  Identities=9%  Similarity=0.052  Sum_probs=121.4

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcEEEEecCC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      ...|.+|.-..+|..-+.+     .+| +..||-.         ..+..... ......|.++.-..++.  +-++..+ 
T Consensus        21 ~n~V~~I~qD~~G~lWigT-----~~G-L~ryDG~---------~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigT~~-   82 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGS-----NKG-LFSYDGY---------STQQHFTYGENNNTRIYCGVIIDNTY--LYMGTDN-   82 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEE-----SSC-EEEECSS---------CEEECSCTTSTTSSCEEEEEEETTTE--EEEEETT-
T ss_pred             cceEEEEEECCCCCEEEEE-----CCC-ccccCCC---------ceEEEEccCCCCCceEEEEEEcCCCc--EEEEeCC-
Confidence            4678888887777655553     444 5556632         11111000 11234688887777765  4455444 


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee-----c-ce-eEEEEc
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-----H-AH-VRNVDY  216 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~-~~-v~~~~~  216 (351)
                      -+..||..+..-..     ........|.++.. .++ .|.+++.+ .+..+|..+++.. .+.     . .. |.++..
T Consensus        83 Gl~~yd~~~~~f~~-----~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~  153 (758)
T 3ott_A           83 GILVYNYRADRYEQ-----PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR  153 (758)
T ss_dssp             EEEEEETTTTEECC-----CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE
T ss_pred             CeEEEeCCCCEEEC-----cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE
Confidence            47889987532111     10011224666654 244 46666655 6888888765422 221     1 12 888888


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC------CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL  290 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  290 (351)
                      .+++. +.+ |+.+ -+..|+... .+ ...+...      ...|.++...+++ ..|..|+. +-+..+|...      
T Consensus       154 d~~g~-lWi-gt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~------  220 (758)
T 3ott_A          154 TKDNQ-IYV-GTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPST------  220 (758)
T ss_dssp             CTTCC-EEE-EETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTT------
T ss_pred             cCCCC-EEE-EeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCC------
Confidence            88887 443 4444 477788654 22 2222211      1247888877766 54444443 4577888765      


Q ss_pred             CCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                                   .+...........|.++...++|. +.+ |+. +-+.+++..
T Consensus       221 -------------~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gT~-~Gl~~~~~~  259 (758)
T 3ott_A          221 -------------GQIKQTEAFHNNSIKSLALDGNGD-LLA-GTD-NGLYVYHND  259 (758)
T ss_dssp             -------------TEEEEEEEEEEEEEEEEEECTTCC-EEE-EET-TEEEEECCT
T ss_pred             -------------CeEEeccCCCCCeEEEEEEcCCCC-EEE-EeC-CceeEEecC
Confidence                         222111111234588888888887 444 343 446777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.1  Score=43.50  Aligned_cols=108  Identities=5%  Similarity=-0.020  Sum_probs=64.1

Q ss_pred             EEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE--CCCCCcEEEe--ecCCeEEEEEcccCCcCceeecce-
Q 018697          136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW--DPHDVNAVAA--TCESSVQFWDLRSMGKTNSIEHAH-  210 (351)
Q Consensus       136 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~-  210 (351)
                      +++++.||.|.-+|..+++.........    ..++....-  .+.+..++++  +.||.|..+|..+|.....+..+. 
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPEN----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGG----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCc----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            6777888999988888776555543321    001111110  0122234444  579999999988875544443222 


Q ss_pred             eE--EEEcC-----------CCCCcEEEEecCCCeEEEEecccCCcceeEee
Q 018697          211 VR--NVDYD-----------TKKKHLLVTAADESGIHLWDLRMLKAPIQELP  249 (351)
Q Consensus       211 v~--~~~~~-----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  249 (351)
                      +.  -+...           ..+. .+++|+.+|.+...|+++ ++.+.++.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~t-G~~~W~~~  138 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLN-GEIISAFG  138 (339)
T ss_dssp             HTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTT-CCEEEEES
T ss_pred             eeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCC-CcEEEEEe
Confidence            11  01110           0233 688899999999999998 77777775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.46  E-value=1.6  Score=35.41  Aligned_cols=99  Identities=11%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             CCCcEEEeec-------CCeEEEEEcccCCcC--ceeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEecccCC
Q 018697          179 HDVNAVAATC-------ESSVQFWDLRSMGKT--NSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLK  242 (351)
Q Consensus       179 ~~~~l~~~~~-------d~~i~iwd~~~~~~~--~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  242 (351)
                      ++..++.|+.       -..+.+||+.+.+-.  ..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+ .
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~-~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTT-N  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTT-T
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCC-C
Confidence            4555566553       245888998765321  1122122  222233  454 77777754     4688999875 3


Q ss_pred             cceeEeeCCCCc--eeEEEecCCCCCeEEEeeCCC-----eEEEEEcCC
Q 018697          243 APIQELPGHTHW--TWAVCCNPEYDGFILSAGTDS-----TVNLWLVST  284 (351)
Q Consensus       243 ~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~  284 (351)
                       .-..+.....+  -..+.. -++ .+++.|+.++     .+.+||..+
T Consensus       231 -~W~~~~~~~~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          231 -AWRQVADMNMCRRNAGVCA-VNG-LLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             -EEEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             -CEeeCCCCCCccccCeEEE-ECC-EEEEECCcCCCcccccEEEEcCCC
Confidence             22222211111  111221 245 6777777653     478888876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.66  E-value=6.6  Score=36.74  Aligned_cols=190  Identities=6%  Similarity=0.000  Sum_probs=98.2

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      ..|.++....++...+.+     .+ -+..||...         .+...........|.++.. .++.  +.++..+ -+
T Consensus        63 ~~i~~i~~d~~g~lWigT-----~~-Gl~~yd~~~---------~~f~~~~~~~~~~i~~i~~-~~g~--lWigt~~-Gl  123 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGT-----DN-GILVYNYRA---------DRYEQPETDFPTDVRTMAL-QGDT--LWLGALN-GL  123 (758)
T ss_dssp             SCEEEEEEETTTEEEEEE-----TT-EEEEEETTT---------TEECCCSCCCCSCEEEEEE-ETTE--EEEEETT-EE
T ss_pred             ceEEEEEEcCCCcEEEEe-----CC-CeEEEeCCC---------CEEECcccCCCceEEEEEe-cCCc--EEEEcCC-cc
Confidence            467887766665444332     34 467888662         1111111111234666654 3454  4444444 67


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCce-ee-----cce-eEEEEcCC
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-IE-----HAH-VRNVDYDT  218 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~-----~~~-v~~~~~~~  218 (351)
                      ..+|..+.. ..........-....|.++...+++... +++.+ .|..+|..+++.... ..     ... |.++...+
T Consensus       124 ~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  200 (758)
T 3ott_A          124 YTYQLQSRK-LTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT  200 (758)
T ss_dssp             EEEETTTCC-EEEECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred             eeEeCCCCe-EEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence            888876432 1111010000112357788777766644 45544 577788765432110 01     011 77888777


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++. .|..|+. +-+..+|..+ .+ +..+. .....|.++...++| .+.+ |+.+ -+.+++...
T Consensus       201 ~~~-~lWigt~-~Gl~~~~~~~-~~-~~~~~~l~~~~i~~i~~d~~g-~lWi-gT~~-Gl~~~~~~~  260 (758)
T 3ott_A          201 TRQ-CVWIGTE-GYLFQYFPST-GQ-IKQTEAFHNNSIKSLALDGNG-DLLA-GTDN-GLYVYHNDT  260 (758)
T ss_dssp             TTT-EEEEEEE-EEEEEEETTT-TE-EEEEEEEEEEEEEEEEECTTC-CEEE-EETT-EEEEECCTT
T ss_pred             CCC-EEEEEEC-CCCeEEcCCC-Ce-EEeccCCCCCeEEEEEEcCCC-CEEE-EeCC-ceeEEecCC
Confidence            665 3444554 4678888764 32 22221 123458888888777 4443 4444 577888765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.49  E-value=3.7  Score=33.48  Aligned_cols=59  Identities=10%  Similarity=0.151  Sum_probs=32.8

Q ss_pred             CCCcEEEeec------CCeEEEEEcccCC--cCceeecce--eEEEEcCCCCCcEEEEecCCC-----eEEEEeccc
Q 018697          179 HDVNAVAATC------ESSVQFWDLRSMG--KTNSIEHAH--VRNVDYDTKKKHLLVTAADES-----GIHLWDLRM  240 (351)
Q Consensus       179 ~~~~l~~~~~------d~~i~iwd~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  240 (351)
                      +++.++.|+.      -..+.+||+.+.+  .+..+..+.  ...+.+  ++. +++.|+.++     .+.+||+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCC
Confidence            4556666664      2468889987653  122222222  222333  454 777777543     588888875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.39  E-value=3.9  Score=33.45  Aligned_cols=100  Identities=13%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             CCCcEEEeecC-------CeEEEEEcccCCcC--ceeecce-eEEEEcCCCCCcEEEEecC------CCeEEEEecccCC
Q 018697          179 HDVNAVAATCE-------SSVQFWDLRSMGKT--NSIEHAH-VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRMLK  242 (351)
Q Consensus       179 ~~~~l~~~~~d-------~~i~iwd~~~~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~  242 (351)
                      ++..++.|+.+       ..+.+||+.+.+-.  ..+.... -.+++. .++. +++.|+.      -..+.+||+.+ .
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~-~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKK-G  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE-EEEECCEESSSCBCCCEEEEETTT-T
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCC-C
Confidence            45666666643       35778888765321  1122111 112222 3454 6777764      24589999875 3


Q ss_pred             cceeEeeCCC--CceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018697          243 APIQELPGHT--HWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (351)
Q Consensus       243 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~  284 (351)
                      + -..+....  ..-.+++. -++ .+++.|+.+     ..+.+||+.+
T Consensus       186 ~-W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          186 D-WKDLAPMKTPRSMFGVAI-HKG-KIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             E-EEEECCCSSCCBSCEEEE-ETT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred             E-EEECCCCCCCcccceEEE-ECC-EEEEEcCcCCCCccceEEEEECCC
Confidence            2 22222111  11112222 244 666767643     2467788876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.87  E-value=3.3  Score=34.54  Aligned_cols=91  Identities=10%  Similarity=-0.049  Sum_probs=42.2

Q ss_pred             cEEEEe-cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec-C---------CeEEEEEcccCC--
Q 018697          135 DKLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E---------SSVQFWDLRSMG--  201 (351)
Q Consensus       135 ~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~~--  201 (351)
                      +++.++ ....+.+||+.+.....................+.+  ++..++.|+. +         ..+.+||+.+.+  
T Consensus        22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~   99 (357)
T 2uvk_A           22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV   99 (357)
T ss_dssp             EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred             EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence            566664 346788999864222222221111000111222222  4566666654 2         468889987653  


Q ss_pred             cCceee-cce--eEEEEcCCCCCcEEEEecCC
Q 018697          202 KTNSIE-HAH--VRNVDYDTKKKHLLVTAADE  230 (351)
Q Consensus       202 ~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~d  230 (351)
                      .+..+. ...  ..++.  .++. +++.|+.+
T Consensus       100 ~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~  128 (357)
T 2uvk_A          100 KLMSHAPMGMAGHVTFV--HNGK-AYVTGGVN  128 (357)
T ss_dssp             ECSCCCSSCCSSEEEEE--ETTE-EEEEECCC
T ss_pred             ECCCCCCcccccceEEE--ECCE-EEEEeCcC
Confidence            122222 122  22233  3555 77778754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.57  E-value=0.27  Score=43.63  Aligned_cols=118  Identities=12%  Similarity=0.097  Sum_probs=71.0

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccC----CCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG----QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      -....+.+..+|||++++++   |-.+.++.|++++....    ....+.......... .-.....+|.++|.  ..++
T Consensus       321 ~pksPHGv~vsPDGkyi~v~---GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~--aYTt  394 (638)
T 3sbq_A          321 VPKNPHGCNTSSDGKYFIAA---GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGN--AYTT  394 (638)
T ss_dssp             ESSSCCCEEECTTSCEEEEE---CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSE--EEEE
T ss_pred             CCCCCcceeeCCCCCEEEEc---CCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCc--eEee
Confidence            34566788899999999997   67888999999984211    000111122223322 23457789999995  6666


Q ss_pred             -ecCCcEEEEEcCCC------CCCcccc----cccccCcccceeeeEECCCCCcEEEee
Q 018697          140 -IDEENIFLWSLDCS------NKNAQVQ----SKQSSGMLHYLSGGAWDPHDVNAVAAT  187 (351)
Q Consensus       140 -~~d~~v~iwd~~~~------~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~  187 (351)
                       --|.+|.-|++...      ++...+.    .....+|.....+-.-.|+|++|++..
T Consensus       395 lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          395 LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence             57999999999742      2211221    122333433333334467888888874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.38  E-value=9  Score=35.53  Aligned_cols=148  Identities=8%  Similarity=0.071  Sum_probs=73.4

Q ss_pred             CCcEEEEecC----CcEEEEEcCCCCCCccccc---ccccCcccceeeeEECCCCCcEEEeecC------CeEEEEEccc
Q 018697          133 RHDKLVSIDE----ENIFLWSLDCSNKNAQVQS---KQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRS  199 (351)
Q Consensus       133 ~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~  199 (351)
                      ..+++.++.+    ..+.+||+.+..-......   ............+.+..++..++.|+.+      ..+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            3356666542    4688888875432111101   0011111122223332256666666632      3578888876


Q ss_pred             CC--cCceeecce-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCcceeEeeC------CCCceeEEEecCC-CCCe
Q 018697          200 MG--KTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPG------HTHWTWAVCCNPE-YDGF  267 (351)
Q Consensus       200 ~~--~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~~  267 (351)
                      .+  .+..+..+. -.+++...++. +++.|+.++  .+.+||..+ . .-..+..      .......+.+... + .+
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t-~-~W~~~~~~g~~p~~r~~~~a~v~~~~~~-~i  553 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTE-E-IFKDVTPKDEFFQNSLVSAGLEFDPVSK-QG  553 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTT-T-EEEECCCSSGGGGSCCBSCEEEEETTTT-EE
T ss_pred             CcEEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCC-C-ceEEccCCCCCCCcccceeEEEEeCCCC-EE
Confidence            43  222222222 22233323565 777787554  689999875 2 2222221      1112233455554 4 67


Q ss_pred             EEEeeC--C-----CeEEEEEcCC
Q 018697          268 ILSAGT--D-----STVNLWLVST  284 (351)
Q Consensus       268 l~s~~~--d-----g~i~iwd~~~  284 (351)
                      ++.|+.  +     ..+.+||+.+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECT
T ss_pred             EEECCcCCCCCeeeCcEEEEEccC
Confidence            777775  2     3588889887

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.38  E-value=11  Score=34.96  Aligned_cols=201  Identities=9%  Similarity=0.076  Sum_probs=100.3

Q ss_pred             eeee-eCCCCCceEEEEeecCCc-ceEEEEEcccccCCCCCCcceeee-eee-cccc------ceeEEEecCCCCCcEEE
Q 018697           69 WDLS-SCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIA-ALD-AHVG------KINCVLWWSSGRHDKLV  138 (351)
Q Consensus        69 ~~i~-~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~-~~~-~h~~------~v~~~~~~~~~~~~~~~  138 (351)
                      ..+. ++|++++++.....||.| ..++++|+.         +.+.+. .+. .-+.      ....++|..++. +++.
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~---------t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~-~~~~  201 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLE---------KKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT-IIFN  201 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETT---------TTEECTTCSCCBCTTCCBCCEETCCEEEEETTE-EEEC
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECC---------cCCcCCCCcccccccccccccccceeeEECCCE-EEEE
Confidence            3455 899999888777666666 469999998         333321 111 0000      112346663333 2332


Q ss_pred             E----------ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCc-----EEEee---cCCeEEEEEcccC
Q 018697          139 S----------IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-----AVAAT---CESSVQFWDLRSM  200 (351)
Q Consensus       139 ~----------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~---~d~~i~iwd~~~~  200 (351)
                      +          +.-..|+.|.+.+......++......  ....+...++++++     +++.+   ....+.+.|+...
T Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  279 (711)
T 4hvt_A          202 LVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKE--YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK  279 (711)
T ss_dssp             CCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTT--SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred             eCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCC--ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence            1          123568888887654333332222111  12233445666664     33322   2245666665531


Q ss_pred             C-cCceeecceeEEEEcCCCCCcEEEEe----------cCCCeEEEEecccCC------cceeE-ee-CCCCceeEEEec
Q 018697          201 G-KTNSIEHAHVRNVDYDTKKKHLLVTA----------ADESGIHLWDLRMLK------APIQE-LP-GHTHWTWAVCCN  261 (351)
Q Consensus       201 ~-~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~------~~~~~-~~-~~~~~v~~~~~~  261 (351)
                      . ....+..+.-..+..+.++. +++..          ...+.|...|+....      ...+. +. .....+..+.|.
T Consensus       280 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (711)
T 4hvt_A          280 NLKLQKINMPSDATLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT  358 (711)
T ss_dssp             SCEEEECCSCTTCEEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred             CCcceEeecCCcceEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence            1 11222211111122334554 44422          146778999987631      12333 32 233467788888


Q ss_pred             CCCCCeEEEeeCCCe--EEEEEcCC
Q 018697          262 PEYDGFILSAGTDST--VNLWLVST  284 (351)
Q Consensus       262 ~~~~~~l~s~~~dg~--i~iwd~~~  284 (351)
                      .+  .++++...++.  |.++|...
T Consensus       359 ~~--~l~~~~~~~~~~~l~~~~~~~  381 (711)
T 4hvt_A          359 KD--RVFLATYDNVVAKVVTFTLEN  381 (711)
T ss_dssp             SS--CEEEEEEETTEEEEEEECEET
T ss_pred             CC--EEEEEEEECCEEEEEEEECCC
Confidence            75  57777777774  56666554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.08  E-value=6.6  Score=31.85  Aligned_cols=137  Identities=5%  Similarity=-0.035  Sum_probs=65.9

Q ss_pred             cEEEEecC-----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-----CeEEEEEcccCCc--
Q 018697          135 DKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRSMGK--  202 (351)
Q Consensus       135 ~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~--  202 (351)
                      +++.++.+     ..+.+||+.+..-  ...... .........+.+  ++..++.|+.+     ..+.+||+.+.+-  
T Consensus       124 iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          124 IYAVGGSHGCIHHNSVERYEPERDEW--HLVAPM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             EEEECCEETTEECCCEEEEETTTTEE--EECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCcccccEEEECCCCCeE--eECCCC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56665432     4688888875321  111111 111111222222  45666666543     4688899876531  


Q ss_pred             Cceeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEecccCCcceeEeeCC---CCceeEEEecCCCCCeEEEee
Q 018697          203 TNSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPIQELPGH---THWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       203 ~~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      +..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+ . .-..+...   ......+.+  ++ .+++.|+
T Consensus       199 ~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG  270 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVET-E-TWTFVAPMKHRRSALGITVH--QG-RIYVLGG  270 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT-T-EEEECCCCSSCCBSCEEEEE--TT-EEEEECC
T ss_pred             CCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCC-C-cEEECCCCCCCccceEEEEE--CC-EEEEEcC
Confidence            11122122  222333  454 77777654     5689999875 2 22222211   111112222  44 6777777


Q ss_pred             CC-----CeEEEEEcCC
Q 018697          273 TD-----STVNLWLVST  284 (351)
Q Consensus       273 ~d-----g~i~iwd~~~  284 (351)
                      .+     ..+.+||+.+
T Consensus       271 ~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          271 YDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             BCSSCBCCEEEEEETTT
T ss_pred             cCCCcccceEEEEcCCC
Confidence            54     3567777765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.47  E-value=8.2  Score=32.04  Aligned_cols=47  Identities=9%  Similarity=0.020  Sum_probs=24.2

Q ss_pred             CeEEEEEcccCCcC--ceeecce-e-EEEEcCCCCCcEEEEecC------CCeEEEEec
Q 018697          190 SSVQFWDLRSMGKT--NSIEHAH-V-RNVDYDTKKKHLLVTAAD------ESGIHLWDL  238 (351)
Q Consensus       190 ~~i~iwd~~~~~~~--~~~~~~~-v-~~~~~~~~~~~~l~~~~~------dg~i~i~d~  238 (351)
                      ..+.+||+.+.+-.  ..+.... . .+++.. ++. +++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDK-TWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTE-EEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCE-EEEEeeecCCCcccCceEEEEe
Confidence            57889998765321  1111111 1 222222 444 6777763      345777876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.30  E-value=7.8  Score=31.57  Aligned_cols=59  Identities=8%  Similarity=0.112  Sum_probs=31.5

Q ss_pred             CCCcEEEeec------CCeEEEEEcccCCc--Cceeecce--eEEEEcCCCCCcEEEEecCC-----CeEEEEeccc
Q 018697          179 HDVNAVAATC------ESSVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRM  240 (351)
Q Consensus       179 ~~~~l~~~~~------d~~i~iwd~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  240 (351)
                      ++..++.|+.      -..+.+||+.+.+-  +..+....  ...+.+  ++. +++.|+.+     ..+.+||+.+
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTT
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCC
Confidence            4565666653      24688999886532  11111111  222232  444 67777643     3577888875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.95  E-value=11  Score=32.88  Aligned_cols=107  Identities=13%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             cceeEEEecCCCC-CcEEEEecCCcEEEEEcCCCCCCccccc---cccc----CcccceeeeEECCC---CCcEEEe-ec
Q 018697          121 GKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQS---KQSS----GMLHYLSGGAWDPH---DVNAVAA-TC  188 (351)
Q Consensus       121 ~~v~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~----~~~~~v~~~~~~~~---~~~l~~~-~~  188 (351)
                      ...+.|+|.|++. . ++++...|.|++++.........+..   ....    .....+..++|+|+   ...|++. +.
T Consensus        14 ~~P~~~a~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4567899999995 4 56666789999997542211111110   0100    11236788999996   3344433 22


Q ss_pred             --C----------CeEEEEEcccC----------CcCceee---cce-eEEEEcCCCCCcEEEEecC
Q 018697          189 --E----------SSVQFWDLRSM----------GKTNSIE---HAH-VRNVDYDTKKKHLLVTAAD  229 (351)
Q Consensus       189 --d----------~~i~iwd~~~~----------~~~~~~~---~~~-v~~~~~~~~~~~~l~~~~~  229 (351)
                        +          ..|.-|.+..+          +.+..+.   ..| ...|+|.|||. ++++.++
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence              1          13444555421          1111222   124 88999999997 5555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.72  E-value=15  Score=34.05  Aligned_cols=139  Identities=12%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             eEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCccc
Q 018697           92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      .+.+||...       ..+..+..+......- +++...++. +++.++.++  .+.+||+.+..-..............
T Consensus       469 dv~~yd~~t-------~~W~~~~~~p~~R~~h-~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~  539 (695)
T 2zwa_A          469 DNWIFDMKT-------REWSMIKSLSHTRFRH-SACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL  539 (695)
T ss_dssp             CCEEEETTT-------TEEEECCCCSBCCBSC-EEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred             cEEEEeCCC-------CcEEECCCCCCCcccc-eEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc
Confidence            477788762       2344443332211111 222223444 566765433  78999988643111110000111111


Q ss_pred             ceeeeEECCC-CCcEEEeec--C-----CeEEEEEcccCCc-----Cceee----cce-eEEEEcCCCCCcEEEEecC--
Q 018697          170 YLSGGAWDPH-DVNAVAATC--E-----SSVQFWDLRSMGK-----TNSIE----HAH-VRNVDYDTKKKHLLVTAAD--  229 (351)
Q Consensus       170 ~v~~~~~~~~-~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~----~~~-v~~~~~~~~~~~~l~~~~~--  229 (351)
                      ...++.+..+ +..++.|+.  +     +.+.+||+.+..-     -..+.    .+. -.+++...++. +++.|+.  
T Consensus       540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~  618 (695)
T 2zwa_A          540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSP  618 (695)
T ss_dssp             BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCS
T ss_pred             ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccC
Confidence            2233455544 555666654  2     4688999987762     11111    111 11222223254 7777774  


Q ss_pred             ------CCeEEEEeccc
Q 018697          230 ------ESGIHLWDLRM  240 (351)
Q Consensus       230 ------dg~i~i~d~~~  240 (351)
                            ...+.+||+.+
T Consensus       619 ~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          619 SGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             SCCCCTTTSEEEEETTT
T ss_pred             CCCCCCCCeEEEEECCC
Confidence                  34689999875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.14  E-value=9.1  Score=30.90  Aligned_cols=171  Identities=8%  Similarity=-0.029  Sum_probs=80.4

Q ss_pred             ceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC------CcEEEEEcCCCCCCcccccccc
Q 018697           91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQS  164 (351)
Q Consensus        91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~  164 (351)
                      ..+.+||...       .++..+..+.........+.+  ++. +++.++.+      ..+.+||+.+..-  ...... 
T Consensus        70 ~~~~~~d~~~-------~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~-  136 (306)
T 3ii7_A           70 KRMDCYNVVK-------DSWYSKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESW--HTKPSM-  136 (306)
T ss_dssp             CEEEEEETTT-------TEEEEEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEE--EEECCC-
T ss_pred             ceEEEEeCCC-------CeEEECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCce--EeCCCC-
Confidence            4577788762       234443333222111222222  333 56666543      4688899875421  111111 


Q ss_pred             cCcccceeeeEECCCCCcEEEeec---------CCeEEEEEcccCCc--Cceeecce--eEEEEcCCCCCcEEEEecCC-
Q 018697          165 SGMLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGK--TNSIEHAH--VRNVDYDTKKKHLLVTAADE-  230 (351)
Q Consensus       165 ~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~d-  230 (351)
                      .........+.+  +++.++.|+.         -..+.+||+.+.+-  +..+....  ...+.+  ++. +++.|+.+ 
T Consensus       137 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~  211 (306)
T 3ii7_A          137 LTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDK-IFAVGGQNG  211 (306)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEET
T ss_pred             cCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCE-EEEEeCCCC
Confidence            110111122222  4555566653         34588899876532  11121111  222222  454 77777653 


Q ss_pred             ----CeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEeeCC-----CeEEEEEcCC
Q 018697          231 ----SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVST  284 (351)
Q Consensus       231 ----g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~  284 (351)
                          ..+.+||+.+ . .-..+..   .......+.+  ++ .+++.|+.+     ..+.+||...
T Consensus       212 ~~~~~~~~~yd~~~-~-~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          212 LGGLDNVEYYDIKL-N-EWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             TEEBCCEEEEETTT-T-EEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCCCceEEEeeCCC-C-cEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence                4688999875 2 1222211   1111222222  44 677777754     4678888876

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.84  E-value=9.4  Score=30.70  Aligned_cols=220  Identities=12%  Similarity=0.046  Sum_probs=113.3

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEE
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~  146 (351)
                      .|..++....  ..++.    . |+.|..|-.....+ .    ..+.    .....|..++......  ++. . ||.|+
T Consensus        25 ~i~~ia~G~~--h~~~l----~-~G~v~~wG~n~~Gq-l----g~p~----~~~~~i~~ia~G~~hs--~~l-~-~G~v~   84 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLAL----K-GGKVLGWGANLNGQ-L----TMPA----ATQSGVDAIAAGNYHS--LAL-K-DGEVI   84 (282)
T ss_dssp             SCCEEEECSS--EEEEE----E-TTEEEEEECCSSST-T----SCCG----GGGSCCCEEEECSSEE--EEE-E-TTEEE
T ss_pred             CCcEEEeCCC--eEEEE----E-CCEEEEEeCCCCCC-C----CCCc----cCCCCEEEEEeCCCEE--EEE-E-CCEEE
Confidence            5666665432  22332    3 78888887552111 0    0010    1123566666554433  333 4 89999


Q ss_pred             EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc-eeecce-eEEEEcCCCCCcEE
Q 018697          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEHAH-VRNVDYDTKKKHLL  224 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l  224 (351)
                      .|-.+...+.......     ...|..++...  ...++-. +|.|+.|-....-.+. ...... |..++......  +
T Consensus        85 ~wG~n~~Gqlg~P~~~-----~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~--~  154 (282)
T 3qhy_B           85 AWGGNEDGQTTVPAEA-----RSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA--L  154 (282)
T ss_dssp             EEECCTTSTTCCCGGG-----SSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE--E
T ss_pred             EeeCCCCCCCCCCccc-----CCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE--E
Confidence            9987754443221111     12577776653  3344445 9999999865432221 111112 77776655442  3


Q ss_pred             EEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                      +. . ||.|+.|-.....+.-... .-...|..++.....  .++.  .||.|..|-....                  +
T Consensus       155 ~l-~-~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~------------------g  209 (282)
T 3qhy_B          155 AV-K-NGGVIAWGDNYFGQTTVPA-EAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRY------------------K  209 (282)
T ss_dssp             EE-E-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTT------------------S
T ss_pred             EE-E-CCEEEEecCCCCCCCCCce-ecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCC------------------C
Confidence            32 2 6999999876544321111 113457777765533  3333  5999999976652                  1


Q ss_pred             ccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ++- .-......|..++.....  .++..  ||.|+.|--..
T Consensus       210 qlg-~p~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          210 QTT-VPTEALSGVSAIASGEWY--SLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             TTC-CCGGGGSSCCEEEECSSC--EEEEE--TTEEEEESTTC
T ss_pred             CCC-CCcccCCCceEEEcCCCE--EEEEE--CCEEEEecCCC
Confidence            110 000111246666655443  23333  88888886554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.40  E-value=0.6  Score=38.89  Aligned_cols=102  Identities=13%  Similarity=0.034  Sum_probs=61.0

Q ss_pred             CcEEEeecCCeEEEEEcccCCcCceeecc--e-eEEEE---cCCCCCcEEEEe-cCCCeEEEEecccCCcceeEeeC---
Q 018697          181 VNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVD---YDTKKKHLLVTA-ADESGIHLWDLRMLKAPIQELPG---  250 (351)
Q Consensus       181 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-v~~~~---~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~---  250 (351)
                      ..+++++.||.|+-+|..+|+....+...  . +....   ...++. .++.. ..||.|..++..+ +.....+..   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTT-EEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCC-CcEEeeeccccc
Confidence            46888999999999999999888887754  1 11111   111222 44443 6899999999765 322222221   


Q ss_pred             -CCCceeE---EEe-cC----CCCCeEEEeeCCCeEEEEEcCCC
Q 018697          251 -HTHWTWA---VCC-NP----EYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       251 -~~~~v~~---~~~-~~----~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                       ...++..   ... .+    .+ ..+++|+.++.+...|.+++
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             HTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTC
T ss_pred             eeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCC
Confidence             1122211   000 00    23 57888999999999888874

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=81.73  E-value=23  Score=29.95  Aligned_cols=141  Identities=10%  Similarity=0.109  Sum_probs=71.1

Q ss_pred             eEEEEEcccC--CcCceeecc-------e-eEEEEcC---CC----CCcEEEEecCCCeEEEEecccCCcceeEee----
Q 018697          191 SVQFWDLRSM--GKTNSIEHA-------H-VRNVDYD---TK----KKHLLVTAADESGIHLWDLRMLKAPIQELP----  249 (351)
Q Consensus       191 ~i~iwd~~~~--~~~~~~~~~-------~-v~~~~~~---~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  249 (351)
                      +|.+||+.+.  +.++.+..+       . +..+.+.   |.    +.+..++=...+.|.+||+.+ ++..+.+.    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence            4555666665  544444321       1 6666666   32    333445555678899999986 43322221    


Q ss_pred             ----------CC----CCceeEEEecCC----CCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec
Q 018697          250 ----------GH----THWTWAVCCNPE----YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS  311 (351)
Q Consensus       250 ----------~~----~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                                +.    ...+..|+++|+    + +.|+-....+ -++|.+.+..-....           ....+..+.
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~-~~LYf~plss-~~ly~V~T~~L~~~~-----------~~~~v~~~G  269 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGN-RPAYYLAGSA-IKVYSVNTKELKQKG-----------GKLNPELLG  269 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSC-CEEEEEESSC-SEEEEEEHHHHSSTT-----------CCCCCEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCC-eEEEEEECCC-CcEEEEEHHHhhCcc-----------hhhceEEee
Confidence                      10    135778888887    4 4454443333 234444321000000           011122221


Q ss_pred             --cccceEEEEEeC-CCCCceEEEeeeCCeEEEeecCc
Q 018697          312 --DYEDSVYGLAWS-SREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       312 --~~~~~v~~~~~~-~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                        +....-..++.. .+|. ++++--..+.|..|+...
T Consensus       270 ~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          270 NRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             ECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred             ecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence              111223345665 5665 677777888999999864

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=80.48  E-value=21  Score=28.66  Aligned_cols=181  Identities=10%  Similarity=0.018  Sum_probs=96.6

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG  201 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  201 (351)
                      .|..++......  ++. . ||.|+.|-.+...+......     ....|..++..... .++. . ||.|+.|-....-
T Consensus        25 ~i~~ia~G~~h~--~~l-~-~G~v~~wG~n~~Gqlg~p~~-----~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~G   92 (282)
T 3qhy_B           25 GVDAIAGGYFHG--LAL-K-GGKVLGWGANLNGQLTMPAA-----TQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDG   92 (282)
T ss_dssp             SCCEEEECSSEE--EEE-E-TTEEEEEECCSSSTTSCCGG-----GGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTS
T ss_pred             CCcEEEeCCCeE--EEE-E-CCEEEEEeCCCCCCCCCCcc-----CCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCC
Confidence            466665544322  333 4 89999998775444332111     12256677665432 2333 4 8999999865432


Q ss_pred             cCce-eecc-eeEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEE
Q 018697          202 KTNS-IEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL  279 (351)
Q Consensus       202 ~~~~-~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  279 (351)
                      .+.. .... .|..++......  ++. . +|.|+.|-.....+.-.. ......|..++.....   .+.-. ||.|..
T Consensus        93 qlg~P~~~~~~v~~ia~G~~hs--~al-~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~~~---~~~l~-~G~v~~  163 (282)
T 3qhy_B           93 QTTVPAEARSGVDAIAAGAWAS--YAL-K-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGGVYT---ALAVK-NGGVIA  163 (282)
T ss_dssp             TTCCCGGGSSSEEEEEEETTEE--EEE-E-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSE---EEEEE-TTEEEE
T ss_pred             CCCCCcccCCCeEEEECcCCEE--EEE-e-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcccCE---EEEEE-CCEEEE
Confidence            2211 1111 266776655542  333 3 899999987654432111 1123457777665433   22234 799999


Q ss_pred             EEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      |-....                  +++ ..-..-...|..++.....  .++.  .||.|+.|-...
T Consensus       164 wG~n~~------------------gql-g~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          164 WGDNYF------------------GQT-TVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EECCTT------------------STT-SCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCT
T ss_pred             ecCCCC------------------CCC-CCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCC
Confidence            977651                  111 1111112457777765543  3433  599999997544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 41/337 (12%), Positives = 98/337 (29%), Gaps = 37/337 (10%)

Query: 10  YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIW 69
           Y L      ++ V      +  ++ +    E+  + +    +G  E   +G   H + + 
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDFERTLKG---HTDSVQ 63

Query: 70  DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-----AHVGKIN 124
           D+S     + + S                       +   +  ++ +          +  
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV 184
            +  W       + +      ++  +  +     + S  +   +        +       
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 185 AATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244
                  + +         +SI  A         K    L++ + +  I +WD+      
Sbjct: 184 HRHVVECISWAP---ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-C 239

Query: 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304
           +  L GH +W   V  +     FILS   D T+ +W                   + +  
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVW-------------------DYKNK 279

Query: 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
             + + + +E  V  L +    P++  + S D  V V
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 17/98 (17%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 185 AATCESSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242
           + + + +++ WD+ +     ++      VR V + +  K + ++ AD+  + +WD +  +
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKR 280

Query: 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
             ++ L  H H+  ++  +     ++++   D TV +W
Sbjct: 281 -CMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 37/273 (13%), Positives = 88/273 (32%), Gaps = 43/273 (15%)

Query: 108 PQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN-IFLWSLD--------------- 151
           P+     AL  H   +  V++        +VS  E+  I +W  +               
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 152 ----------------------CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE 189
                                   +       +   G  H +S  +  P+  + V+A+ +
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 190 SSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248
            +++ W++++     +   H     +    +   L+ + +++  + +W +   +    EL
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAEL 181

Query: 249 PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308
             H H    +   PE     +S  T S                 +  ++  +      L 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
           +   +++ V G+ + S   +I  S + D  + V
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRV 273

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 2/129 (1%)

Query: 152 CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV 211
            +   A+      S    Y++ G      +     + E     W  R+            
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217

Query: 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271
           +  + +  ++ L+ T + ++ I ++ ++     I+ L  H      +         ++S+
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSS 275

Query: 272 GTDSTVNLW 280
           G D+ +  W
Sbjct: 276 GADACIKRW 284

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADE 230
            + P+       + +++ + +DLR+  +  +  H +    + +V +  K   LL+   D+
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDD 291

Query: 231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
              ++WD          L GH +    +    +    + +   DS + +W
Sbjct: 292 FNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 43/306 (14%)

Query: 61  LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120
           L  H  +I+ +      + + S       S    +                ++ A+    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSA------SQDGKLIIWDSYTTN-------KVHAIPLRS 97

Query: 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD 180
             +    +  S   + +     +NI       + +     S++ +G   YLS   +   +
Sbjct: 98  SWVMTCAYAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240
               ++   +   +        T    H              L V+ A ++   LWD+R 
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

Query: 241 LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE------- 293
                Q   GH     A+C  P  +    +   D+T  L+ +         S        
Sbjct: 216 GM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 294 -SLVESPNQR-----------------ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335
            S+  S + R                         + +++ V  L  +     + A+ S+
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV-ATGSW 332

Query: 336 DGRVVV 341
           D  + +
Sbjct: 333 DSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 10/129 (7%), Positives = 38/129 (29%), Gaps = 7/129 (5%)

Query: 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
                   H   IN + ++ +G      +  ++            + ++ +     ++  
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRL--FDLRADQELMTYSHDNIICG 272

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAA 228
           ++  ++       +A   + +   WD     +   +      V  +        +   + 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 229 DESGIHLWD 237
           D   + +W+
Sbjct: 333 DSF-LKIWN 340

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--AWDPHDV 181
              +         +V  D++ I   S D + K     + +    L+    G       D 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 189

Query: 182 NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML 241
             V+ + +++++ WD+        +   H   V         +V+ A +  I +WDL   
Sbjct: 190 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 242 KAP--------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
             P        ++ L  H+   + +  +      I+S+  D T+ +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIW 292

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 24/219 (10%), Positives = 48/219 (21%), Gaps = 11/219 (5%)

Query: 64  HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI 123
               I D+S     +R+               W      G+++       A        +
Sbjct: 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173

Query: 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183
             +     G          +            +     + S     ++     D      
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK---- 229

Query: 184 VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243
                               +  E                  T   ++ I +WD+   K 
Sbjct: 230 ----ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK- 284

Query: 244 PIQELPGHTH--WTWAVCCNPEYDGFILSAGTDSTVNLW 280
            +Q+            V      +G I+S   D T+N +
Sbjct: 285 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHL 235
               D   V+A  + S++ WD     +  S  H ++  +       ++LV+ ++    ++
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNI 307

Query: 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285
           ++LR  K     +       W+V         + +   D    L ++  S
Sbjct: 308 YNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDFS 355

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 29/260 (11%), Positives = 70/260 (26%), Gaps = 9/260 (3%)

Query: 24  ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST 83
           +   + S ++    L  +N +   +L   G  LI        + +          RI + 
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV---GGEASTLSIWDLAAPTPRIKAE 136

Query: 84  VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143
           + S+  +  A                         +   +      + G     +S D  
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196

Query: 144 NIFLWSLD---CSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200
            ++   LD    S    + +  Q       +    + P           S+V+   +   
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 201 GKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC 260
            K     H                V+   ++ ++ W        I +    +    +   
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQS-KESSSVLSCDI 314

Query: 261 NPEYDGFILSAGTDSTVNLW 280
           + + D +I++   D    ++
Sbjct: 315 SVD-DKYIVTGSGDKKATVY 333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 14/198 (7%)

Query: 57  ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116
           +  G  S    I D  +            + G S   A+       G L         + 
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVERLDSENESG 250

Query: 117 DAHVGKINCVLWWSSGRH------DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170
             H   +  V++   G+       D+ V +          D    N+        G   +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSM-------GKTNSIEHAHVRNVDYDTKKKHL 223
           +   A   +D   ++ + +  V FWD +S        G  NS+    V N      + ++
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 224 LVTAADESGIHLWDLRML 241
             T + +    +W  + +
Sbjct: 371 FATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 40/234 (17%)

Query: 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT 187
              SG  D+ V I +      SL  S ++       S G   Y++ G+ D          
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA---VRVWD 233

Query: 188 CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP--- 244
            E+      L S  ++ +     V +V + T+    +V+ + +  + LW+L+        
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 245 --------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296
                        GH  +  +V      D +ILS   D  V  W   + N          
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN---------- 341

Query: 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-----IFASLSYDGRVVVESVK 345
                     L     + +SV  +A ++         +FA+ S D +  +   K
Sbjct: 342 ---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT 252
               +       ++ H+        +     + +A+ +  I +W++  LK   + +P  T
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGT 280

Query: 253 HWTWAVCCNPEYDGFILSAGTDSTVNLW 280
                          ++S   +  +N  
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFV 308

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGI 233
             D  ++ +V       +   D  S      I+    V         ++LLV   D + I
Sbjct: 27  DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARI 85

Query: 234 HLWDLRMLK----APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280
            + DL   +    A I+          +     E    I  A       + 
Sbjct: 86  DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AHVRNVDYDTKKKHLLVTAADESG 232
             +  D   V+   +S+V+ WD+++     +++    H   V      K+ ++T++D+  
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 233 IHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275
           + LWDL+  +        E  G     W +  +      + + G+ +
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRN 326

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309
            H    ++V     +    +S   D  + +W     +++    +S     ++     +  
Sbjct: 12  AHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV-- 66

Query: 310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVVV 341
                D +  +   + E  + A+ S+ G ++ 
Sbjct: 67  -----DVLQAIERDAFELCLVATTSFSGDLLF 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.61
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.4
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.4
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.04
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.99
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.69
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.9
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.67
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.6
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.48
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.42
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.38
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.74
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.38
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.95
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.93
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.56
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.72

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-40  Score=279.57  Aligned_cols=280  Identities=16%  Similarity=0.180  Sum_probs=233.0

Q ss_pred             EeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCC--eEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .|..+.+++++..++.|.     ++.|++|++.....  .+......+|.+.|.+++|+|+++.|+++    +.|+.|++
T Consensus        53 ~V~~v~fs~~g~~latg~-----dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~----~~dg~i~i  123 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG----GEASTLSI  123 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE----ESSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEE-----CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe----eccccccc
Confidence            456677888887777653     67899999876533  33344556899999999999999988875    68999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeE
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA  175 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  175 (351)
                      ||+..       ...+....+..|...+.+++|+|++.. +++++.|+.|++|++.+.....     ....|...+.+++
T Consensus       124 wd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~~~~~~~~~~-----~~~~~~~~v~~l~  190 (337)
T d1gxra_         124 WDLAA-------PTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVR-----QFQGHTDGASCID  190 (337)
T ss_dssp             EECCC-------C--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEE
T ss_pred             ccccc-------ccccccccccccccccccccccccccc-cccccccccccccccccccccc-----ccccccccccccc
Confidence            99872       244666778899999999999999883 6666889999999998643222     2235667899999


Q ss_pred             ECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCc
Q 018697          176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW  254 (351)
Q Consensus       176 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  254 (351)
                      |++++..+++++.|+.+++||+++++.+..+.... |.+++|+|++. ++++++.|+.+++||++. .. ......|...
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~-~~-~~~~~~~~~~  267 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNK-PD-KYQLHLHESC  267 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTS-SC-EEEECCCSSC
T ss_pred             ccccccccccccccccccccccccceeecccccccceEEEEEccccc-ccceeccccccccccccc-cc-cccccccccc
Confidence            99999999999999999999999988777666444 99999999998 789999999999999986 43 3456679999


Q ss_pred             eeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       255 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      |++++|+|++ .+|++++.|+.|++||...                   ++.+..+ .|...|.+++|+|+++ +|++++
T Consensus       268 i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~-------------------~~~~~~~-~~~~~v~~~~~s~d~~-~l~t~s  325 (337)
T d1gxra_         268 VLSLKFAYCG-KWFVSTGKDNLLNAWRTPY-------------------GASIFQS-KESSSVLSCDISVDDK-YIVTGS  325 (337)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------CCEEEEE-ECSSCEEEEEECTTSC-EEEEEE
T ss_pred             cceEEECCCC-CEEEEEeCCCeEEEEECCC-------------------CCEEEEc-cCCCCEEEEEEeCCCC-EEEEEe
Confidence            9999999999 9999999999999999998                   7777665 4678899999999998 899999


Q ss_pred             eCCeEEEeec
Q 018697          335 YDGRVVVESV  344 (351)
Q Consensus       335 ~dg~v~vw~~  344 (351)
                      .||.|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-40  Score=276.90  Aligned_cols=274  Identities=15%  Similarity=0.196  Sum_probs=219.2

Q ss_pred             eecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccc
Q 018697           21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE  100 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~  100 (351)
                      .++.+|++.+++++.     ++.+.+|++.....   ...+.+|.+.|.+++|+|++++|+++    +.|++|+||++..
T Consensus        22 ~~a~~~~g~~l~~~~-----~~~v~i~~~~~~~~---~~~~~~H~~~v~~~~~sp~g~~latg----~~dg~i~iwd~~~   89 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-----GTSVYTVPVGSLTD---TEIYTEHSHQTTVAKTSPSGYYCASG----DVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCEECTTSSEEEEEE-----TTEEEEEETTCSSC---CEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEESSS
T ss_pred             EEEEcCCCCEEEEEe-----CCEEEEEECCCCce---eEEEcCCCCCEEEEEEeCCCCeEecc----ccCceEeeeeeec
Confidence            356678888888763     56788888876432   23457899999999999999988875    7899999999983


Q ss_pred             ccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEe--cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECC
Q 018697          101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP  178 (351)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (351)
                             ........+..|..+|.+++|+|+++. +++++  .+..+++|++++......     ..+|...|.+++|+|
T Consensus        90 -------~~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~-----l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          90 -------TTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFDTGTSNGN-----LTGQARAMNSVDFKP  156 (311)
T ss_dssp             -------TTCCEEEEEECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETTTCCBCBC-----CCCCSSCEEEEEECS
T ss_pred             -------cccccccccccccCccccccccccccc-ccccccccccccccccccccccccc-----ccccccccccccccc
Confidence                   122334567889999999999999995 44444  356799999987544332     235677899999999


Q ss_pred             CCCc-EEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe------
Q 018697          179 HDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL------  248 (351)
Q Consensus       179 ~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  248 (351)
                      ++++ +++++.|+.|++||+++++....+. .|   |.+++|+|+++ ++++++.|+.|++||++. ...+..+      
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~  233 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVD-GTKTGVFEDDSLK  233 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-CCEEEECBCTTSS
T ss_pred             cceeeecccccccccccccccccccccccc-cccccccccccCcccc-cccccccccccccccccc-ccccccccccccc
Confidence            9987 6678899999999999887776665 33   99999999998 899999999999999987 4444443      


Q ss_pred             -eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecccc---ceEEEEEeCC
Q 018697          249 -PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE---DSVYGLAWSS  324 (351)
Q Consensus       249 -~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~  324 (351)
                       .+|...|++++|+|++ .+|++|+.|+.|+|||+++                   ++++.++..|.   ..+.++.|++
T Consensus       234 ~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t-------------------~~~~~~l~~~~~~~~~~~~~~~~~  293 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVAT-------------------LKVEKTIPVGTRIEDQQLGIIWTK  293 (311)
T ss_dssp             SCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSGGGCEEEEEECS
T ss_pred             cccccccccccccCCCC-CEEEEEeCCCeEEEEECCC-------------------CcEEEEEECCCCccceEEEEEecC
Confidence             3588999999999999 9999999999999999998                   88888886653   3455666654


Q ss_pred             CCCceEEEeeeCCeEEEeecC
Q 018697          325 REPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       325 ~~~~~l~s~~~dg~v~vw~~~  345 (351)
                        . .+++++.||.|++||++
T Consensus       294 --~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         294 --Q-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             --S-CEEEEETTCCEEEEETT
T ss_pred             --C-EEEEEECCCEEEEEeCC
Confidence              4 68899999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-38  Score=270.36  Aligned_cols=248  Identities=15%  Similarity=0.189  Sum_probs=209.9

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      .+.+.+|.+.|++++|+|++++|+++    +.|++|+|||+.         +.+.+..+..|..+|.+++|+|++.. ++
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sg----s~Dg~v~iWd~~---------~~~~~~~~~~~~~~v~~v~~~~~~~~-l~  113 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSA----SQDGKLIIWDSY---------TTNKVHAIPLRSSWVMTCAYAPSGNY-VA  113 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTTEEEEEETT---------TTEEEEEEECSCSCEEEEEECTTSSE-EE
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEE----ECCCceeeeecc---------cceeEEEEecccccEEeeEeecccee-ee
Confidence            35688999999999999999988885    799999999998         67888899999999999999999984 66


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccc----------------------------------------cccCcccceeeeEEC
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSK----------------------------------------QSSGMLHYLSGGAWD  177 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~----------------------------------------~~~~~~~~v~~~~~~  177 (351)
                      +++.|+.+.+|+.............                                        ....+...+....+.
T Consensus       114 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             EEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             eecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccc
Confidence            7788999999997754322111100                                        001122345667788


Q ss_pred             CCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCCC
Q 018697          178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHT  252 (351)
Q Consensus       178 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~  252 (351)
                      +....+++++.|+.|++||+++++.+..+. +|   |.+++|+|++. +|++|+.|+.|++||++. ...+..+  ..+.
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~  270 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATGSDDATCRLFDLRA-DQELMTYSHDNII  270 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCTTCC
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecc-ccccccccccccc
Confidence            888899999999999999999998887776 44   99999999998 899999999999999987 4455544  3566


Q ss_pred             CceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEE
Q 018697          253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS  332 (351)
Q Consensus       253 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  332 (351)
                      ..|.+++|+|++ .+|++|+.||.|++||+..                   ++++..+.+|..+|++++|+|+++ +|++
T Consensus       271 ~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~-------------------~~~~~~~~~H~~~V~~l~~s~d~~-~l~s  329 (340)
T d1tbga_         271 CGITSVSFSKSG-RLLLAGYDDFNCNVWDALK-------------------ADRAGVLAGHDNRVSCLGVTDDGM-AVAT  329 (340)
T ss_dssp             SCEEEEEECSSS-CEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEECTTSS-CEEE
T ss_pred             CceEEEEECCCC-CEEEEEECCCEEEEEECCC-------------------CcEEEEEcCCCCCEEEEEEeCCCC-EEEE
Confidence            789999999999 9999999999999999998                   899999999999999999999998 8999


Q ss_pred             eeeCCeEEEee
Q 018697          333 LSYDGRVVVES  343 (351)
Q Consensus       333 ~~~dg~v~vw~  343 (351)
                      |+.||.|+|||
T Consensus       330 ~s~Dg~v~iWd  340 (340)
T d1tbga_         330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EccCCEEEEeC
Confidence            99999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-38  Score=266.27  Aligned_cols=243  Identities=15%  Similarity=0.183  Sum_probs=205.9

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      +.+.+..++++|+++.|+.+     .++.|.+|++.         .......+.+|...|++++|+|++++ +++++.|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~-----~~~~v~i~~~~---------~~~~~~~~~~H~~~v~~~~~sp~g~~-latg~~dg   80 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYC-----NGTSVYTVPVG---------SLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHG   80 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEE-----ETTEEEEEETT---------CSSCCEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred             CCCCeEEEEEcCCCCEEEEE-----eCCEEEEEECC---------CCceeEEEcCCCCCEEEEEEeCCCCe-EeccccCc
Confidence            44667789999999998875     35579999998         56777788999999999999999984 66778999


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec--CCeEEEEEcccCCcCceeecce---eEEEEcCC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--ESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT  218 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~  218 (351)
                      +|++||+.+.......   ....|...|.+++|+|+++++++++.  +..+++|++++++....+. .|   |.+++|+|
T Consensus        81 ~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~  156 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKT---TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKP  156 (311)
T ss_dssp             EEEEEESSSTTCCEEE---EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECS
T ss_pred             eEeeeeeecccccccc---ccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            9999999975543322   22356779999999999999998875  4669999999988877776 44   99999999


Q ss_pred             CCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                      ++++++++|+.|+.|++||+++ .+....+..|..+|+++.|+|++ .++++++.|+.|++||.+.              
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~--------------  220 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVD--------------  220 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--------------
T ss_pred             cceeeecccccccccccccccc-cccccccccccccccccccCccc-ccccccccccccccccccc--------------
Confidence            9997789999999999999997 66788888999999999999999 9999999999999999987              


Q ss_pred             Cccccccccee-------eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          299 PNQRANSLLNS-------YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       299 ~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                           +..+..       ..+|...|++++|+|+++ +|++|+.||.|+|||+++.
T Consensus       221 -----~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         221 -----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATL  270 (311)
T ss_dssp             -----CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT
T ss_pred             -----ccccccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCC
Confidence                 333322       346888999999999998 8999999999999998754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-38  Score=263.35  Aligned_cols=287  Identities=16%  Similarity=0.299  Sum_probs=244.2

Q ss_pred             eeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecC
Q 018697            9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      .|.++.+...|..+.++|+...++.|+    .++.|++|++....   ....+.+|...|.+++|+|++..+++.    .
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s----~Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~----~   78 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASC----S   78 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEE----E
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCC---EEEEEeCCCCcEEEEeeeccccccccc----c
Confidence            455565667788899999888777764    58999999987643   235567899999999999999888875    5


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      .++.+.+|+..         ..+....+..|...+.++.|+|++.. +++++.|+.+++||+.++.....+     .+|.
T Consensus        79 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~  143 (317)
T d1vyhc1          79 ADMTIKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF-----TGHR  143 (317)
T ss_dssp             TTSCCCEEETT---------SSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-----ECCS
T ss_pred             ccccccccccc---------ccccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEE-----ccCC
Confidence            78899999987         55667777889999999999999984 666788999999999875433222     2456


Q ss_pred             cceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCC-------------------cEEEEe
Q 018697          169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKK-------------------HLLVTA  227 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~-------------------~~l~~~  227 (351)
                      ..+.+++|+|++..+++++.|+.|++|++++++....+....  +.+++|+|++.                   .+++++
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            689999999999999999999999999999988777666322  88888877642                   258889


Q ss_pred             cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccc
Q 018697          228 ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL  307 (351)
Q Consensus       228 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (351)
                      +.|+.|++||+++ .+++.++.+|...|.+++|+|++ .+|++++.||.|++||+++                   ++++
T Consensus       224 ~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~-------------------~~~~  282 (317)
T d1vyhc1         224 SRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN-------------------KRCM  282 (317)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT-------------------SCCC
T ss_pred             cCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCC-------------------CcEE
Confidence            9999999999997 77899999999999999999999 9999999999999999998                   8899


Q ss_pred             eeeccccceEEEEEeCCCCCceEEEeeeCCeEEEee
Q 018697          308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVES  343 (351)
Q Consensus       308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~  343 (351)
                      .++.+|...|++++|+|+++ +|++++.||.|+|||
T Consensus       283 ~~~~~h~~~V~~~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 KTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC
T ss_pred             EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEeC
Confidence            99999999999999999998 899999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-38  Score=271.09  Aligned_cols=283  Identities=18%  Similarity=0.235  Sum_probs=223.0

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeE---------------EEEeeecCCcceeeeeeCCCCCceE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTEL---------------ICEGLFSHPNEIWDLSSCPFDQRIF   81 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~h~~~v~~i~~~~~~~~l~   81 (351)
                      ..|..+.+++++..|+.|.     ++.|++|++.......               .......|...|.+++|+|+++.|+
T Consensus        63 ~~V~~l~fs~dg~~lasg~-----d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             SCCCEEEECTTSSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEe-----CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            4567788899988777653     5789999987543211               1122346788899999999999888


Q ss_pred             EEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc
Q 018697           82 STVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS  161 (351)
Q Consensus        82 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~  161 (351)
                      ++    +.|+.|++|+..         ..+.+..+.+|...|.+++|++++.. +++++.++.+++||+.+........ 
T Consensus       138 s~----~~dg~v~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~-  202 (388)
T d1erja_         138 TG----AEDRLIRIWDIE---------NRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLS-  202 (388)
T ss_dssp             EE----ETTSCEEEEETT---------TTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             ec----cccccccccccc---------cccccccccccccccccccccccccc-ccccccceeeeeeeccccccccccc-
Confidence            85    699999999988         67888888999999999999999884 6677889999999998643222211 


Q ss_pred             ccccCcccceeeeEE-CCCCCcEEEeecCCeEEEEEcccCCcCceeec------ce---eEEEEcCCCCCcEEEEecCCC
Q 018697          162 KQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGKTNSIEH------AH---VRNVDYDTKKKHLLVTAADES  231 (351)
Q Consensus       162 ~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~---v~~~~~~~~~~~~l~~~~~dg  231 (351)
                          .+. ....+.+ .+++.+|++++.|+.|++||++++.....+..      .|   |.+++|+|+++ +|++++.|+
T Consensus       203 ----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~  276 (388)
T d1erja_         203 ----IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDR  276 (388)
T ss_dssp             ----CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             ----ccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCC
Confidence                112 3444445 45778899999999999999998876555431      23   99999999998 899999999


Q ss_pred             eEEEEecccCC-----------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          232 GIHLWDLRMLK-----------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       232 ~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      .|++||++...           ........|...|.+++|+|++ .+|++|+.||.|++||+++                
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~----------------  339 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS----------------  339 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT----------------
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCC----------------
Confidence            99999997532           1234556788999999999999 9999999999999999998                


Q ss_pred             ccccccceeeccccceEEEEEe------CCCCCceEEEeeeCCeEEEeecCc
Q 018697          301 QRANSLLNSYSDYEDSVYGLAW------SSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                         ++++.++.+|...|.++++      +|++. +|++|+.||+|+||++++
T Consensus       340 ---~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         340 ---GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             ---CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred             ---CcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeeee
Confidence               8999999999999999874      67887 899999999999999865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-38  Score=268.68  Aligned_cols=308  Identities=17%  Similarity=0.169  Sum_probs=227.3

Q ss_pred             eEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEE
Q 018697           17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW   96 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw   96 (351)
                      .+|..+++++++..+++|+    .++.|++|++... .......+.+|.+.|.+++|+|++++|+++    +.|++|+||
T Consensus         8 ~pIt~~~~s~dg~~la~~~----~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~----s~D~~i~vW   78 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICP----NNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTC----GTDRNAYVW   78 (371)
T ss_dssp             SCCCEEEECTTSSEEEEEC----SSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEE----ETTSCEEEE
T ss_pred             CCeEEEEECCCCCEEEEEe----CCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEE----ECCCeEEEE
Confidence            3477888899998888874    5788999998753 233456678999999999999999988875    689999999


Q ss_pred             EcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEE
Q 018697           97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  176 (351)
                      ++..       ........+..|...|.+++|+|+++. +++++.|+.|++|++....... ........|...|.+++|
T Consensus        79 d~~~-------~~~~~~~~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~v~~v~~  149 (371)
T d1k8kc_          79 TLKG-------RTWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLDW  149 (371)
T ss_dssp             EEET-------TEEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEE-EEEEECTTCCSCEEEEEE
T ss_pred             eecc-------ccccccccccccccccccccccccccc-ceeecccCcceeeeeecccccc-cccccccccccccccccc
Confidence            9972       244556667789999999999999984 6777889999999998654322 222334456778999999


Q ss_pred             CCCCCcEEEeecCCeEEEEEcccCCcCce---------------ee--cce---eEEEEcCCCCCcEEEEecCCCeEEEE
Q 018697          177 DPHDVNAVAATCESSVQFWDLRSMGKTNS---------------IE--HAH---VRNVDYDTKKKHLLVTAADESGIHLW  236 (351)
Q Consensus       177 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------------~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~  236 (351)
                      +|++++|++++.|+.|++||+........               +.  ..|   +.+++|+|+++ ++++++.|+.|++|
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iw  228 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLA  228 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEE
Confidence            99999999999999999999875432110               11  122   89999999998 79999999999999


Q ss_pred             ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC-------CCccc-c-cC---------
Q 018697          237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL-------PSESL-V-ES---------  298 (351)
Q Consensus       237 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~-~-~~---------  298 (351)
                      |++. .+.+..+..|..+|.+++|+|++ .+|++|. |+.+++|..........       ..... . ..         
T Consensus       229 d~~~-~~~~~~~~~~~~~v~s~~fs~d~-~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (371)
T d1k8kc_         229 DADK-KMAVATLASETLPLLAVTFITES-SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  305 (371)
T ss_dssp             EGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             eeec-ccceeeeecccccceeeeecCCC-CEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccc
Confidence            9998 67888999999999999999998 7777655 77777776544211100       00000 0 00         


Q ss_pred             ----CcccccccceeeccccceEEEEEeCCCCC---ceEEEeeeCCeEEEeecCc
Q 018697          299 ----PNQRANSLLNSYSDYEDSVYGLAWSSREP---WIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       299 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~v~vw~~~~  346 (351)
                          ..............|.+.|+++++.+.+.   ..|+|++.||.|++||++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                00000011111235888999999977542   2589999999999999965

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=255.05  Aligned_cols=250  Identities=14%  Similarity=0.167  Sum_probs=204.2

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      .....|...|.+++|+|++++|+++    + |+.|+|||+.....    ...........|.+.|.+++|+|+++. +++
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg----~-dg~V~iWd~~~~~~----~~~~~~~~~~~h~~~I~~v~~s~dg~~-l~s  114 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTG----G-KGCVKVWDISHPGN----KSPVSQLDCLNRDNYIRSCKLLPDGCT-LIV  114 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEE----C-BSEEEEEETTSTTC----CSCSEEEECSCTTSBEEEEEECTTSSE-EEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEE----E-CCEEEEEEccCCcc----cceeEEeeecCCCCcEEEEEEcCCCCE-EEE
Confidence            4445899999999999999998774    4 88999999973211    111223344579999999999999984 667


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      ++.|+.|++||+.......   ......|...+..++|+|++..+++++.++.|++||+++++...... .+   +.+++
T Consensus       115 ~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~  190 (337)
T d1gxra_         115 GGEASTLSIWDLAAPTPRI---KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID  190 (337)
T ss_dssp             EESSSEEEEEECCCC--EE---EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE
T ss_pred             eeccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            7899999999998533221   12233566689999999999999999999999999999887666555 33   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      |++++. .+++++.|+.+++||+++ .+.+..+. |...|.+++|+|++ .+|++++.|+.+++||++.           
T Consensus       191 ~s~~~~-~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~-----------  255 (337)
T d1gxra_         191 ISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNK-----------  255 (337)
T ss_dssp             ECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-----------
T ss_pred             cccccc-cccccccccccccccccc-ceeecccc-cccceEEEEEcccc-cccceeccccccccccccc-----------
Confidence            999998 789999999999999987 65666664 78999999999999 9999999999999999987           


Q ss_pred             ccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                              .+.. ....|...|++++|+|+++ +|++++.||.|++||++..
T Consensus       256 --------~~~~-~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         256 --------PDKY-QLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             --------SCEE-EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC
T ss_pred             --------cccc-cccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCC
Confidence                    4443 4567889999999999999 8999999999999998753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-37  Score=265.47  Aligned_cols=244  Identities=12%  Similarity=0.139  Sum_probs=200.0

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE  143 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~  143 (351)
                      +.++|++++|+|+++.|+++    +.|+.|+||++..       .....+..+++|.++|.+++|+|++++ +++++.|+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~----~~~~~i~iw~~~~-------~~~~~~~~l~gH~~~V~~l~fsp~~~~-l~s~s~D~   73 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAIC----PNNHEVHIYEKSG-------NKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDR   73 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEE----CSSSEEEEEEEET-------TEEEEEEEEECCSSCEEEEEEETTTTE-EEEEETTS
T ss_pred             CCCCeEEEEECCCCCEEEEE----eCCCEEEEEECCC-------CCEEEEEEecCCCCCEEEEEECCCCCE-EEEEECCC
Confidence            34789999999999888775    7899999999872       244677888999999999999999984 66678899


Q ss_pred             cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee---ecce---eEEEEcC
Q 018697          144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI---EHAH---VRNVDYD  217 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~---v~~~~~~  217 (351)
                      +|++||+.+.......   ...+|...|.+++|+|+++.+++++.|+.+++|++.........   ...+   |.+++|+
T Consensus        74 ~i~vWd~~~~~~~~~~---~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTL---VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             CEEEEEEETTEEEEEE---ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             eEEEEeeccccccccc---ccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence            9999999854322221   12346678999999999999999999999999999876543322   2233   9999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecccCC-----------------cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEE
Q 018697          218 TKKKHLLVTAADESGIHLWDLRMLK-----------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW  280 (351)
Q Consensus       218 ~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  280 (351)
                      |++. +|++|+.|+.|++||.....                 ..+.....|...|.+++|+|++ .+|++++.|+.|++|
T Consensus       151 p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iw  228 (371)
T d1k8kc_         151 PNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLA  228 (371)
T ss_dssp             TTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEE
T ss_pred             cccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEE
Confidence            9998 79999999999999986421                 2345566788999999999999 899999999999999


Q ss_pred             EcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      |+..                   +..+..+..|..+|.+++|+|+++ +|++| .|+.+++|..+
T Consensus       229 d~~~-------------------~~~~~~~~~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         229 DADK-------------------KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             EGGG-------------------TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEE
T ss_pred             eeec-------------------ccceeeeecccccceeeeecCCCC-EEEEE-cCCceEEEEee
Confidence            9998                   888889999999999999999987 66654 57877777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.4e-36  Score=248.12  Aligned_cols=250  Identities=17%  Similarity=0.159  Sum_probs=197.8

Q ss_pred             EEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee-eccccceeEEEecCCCCCcE
Q 018697           58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        58 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~  136 (351)
                      .+.+.||.+.|++++|+|++++|+++    +.|++|++||+.         +++.+..+ ..|...|.+++|+|++.  +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~----s~Dg~v~vWd~~---------~~~~~~~~~~~h~~~v~~v~~~~~g~--~   69 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSA----DAEGHINSWDIS---------TGISNRVFPDVHATMITGIKTTSKGD--L   69 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETT---------TCCEEECSSCSCSSCEEEEEECTTSC--E
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEE----cCCCeEEEEECC---------CCcEEEEEcCCCCCcEEEEEeeccce--e
Confidence            46788999999999999999988875    799999999998         55666666 46899999999999997  7


Q ss_pred             EEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEE
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVD  215 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~  215 (351)
                      ++++.|+.+++|+.........  ......+...+.+++|+|+++.++++ .++.+.+|+...   .......+ +.+++
T Consensus        70 ~~~~~d~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~  143 (299)
T d1nr0a2          70 FTVSWDDHLKVVPAGGSGVDSS--KAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK---LTEVPISYNSSCVA  143 (299)
T ss_dssp             EEEETTTEEEEECSSSSSSCTT--SCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE---EEEEECSSCEEEEE
T ss_pred             ecccceeeEEEeccCCcccccc--cccccccccccccccccccccccccc-cccccccccccc---cccccccccccccc
Confidence            7778899999999875322111  11122345578899999998866555 567899998543   22233344 88999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccc
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL  295 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  295 (351)
                      |+|++. ++++|+.|+.|++||++...........|...|++++|+|++ .+|++++.|+.|++||+.....        
T Consensus       144 ~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~--------  213 (299)
T d1nr0a2         144 LSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFE--------  213 (299)
T ss_dssp             ECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTE--------
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--------
Confidence            999998 899999999999999986322222344689999999999999 9999999999999999986110        


Q ss_pred             ccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                              ......+..|...|++++|+|+++ +|++++.||.|++||+++.
T Consensus       214 --------~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         214 --------LAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             --------ESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCT
T ss_pred             --------cccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCC
Confidence                    223445677899999999999998 8999999999999998754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-35  Score=244.74  Aligned_cols=284  Identities=13%  Similarity=0.076  Sum_probs=211.6

Q ss_pred             ccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcce
Q 018697           13 KYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG   92 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~   92 (351)
                      ..+...|..+.++|+...++.|.    .++.|++|++....  .......+|...|.+++|+|++..+ ++    +.|+.
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s----~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~g~~~-~~----~~d~~   77 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSAD----AEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKGDLF-TV----SWDDH   77 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTTSCEE-EE----ETTTE
T ss_pred             CCCCCCcEEEEECCCCCEEEEEc----CCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeeccceee-cc----cceee
Confidence            33566788888999988887664    68999999986532  2222234789999999999998654 43    47899


Q ss_pred             EEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccccee
Q 018697           93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS  172 (351)
Q Consensus        93 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~  172 (351)
                      +++|+.....      ..........+...+.+++|+|++.  +++++.++.+.+|+...   ......      ...+.
T Consensus        78 v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~~~~i~~~~~~~---~~~~~~------~~~~~  140 (299)
T d1nr0a2          78 LKVVPAGGSG------VDSSKAVANKLSSQPLGLAVSADGD--IAVAACYKHIAIYSHGK---LTEVPI------SYNSS  140 (299)
T ss_dssp             EEEECSSSSS------SCTTSCCEEECSSCEEEEEECTTSS--CEEEEESSEEEEEETTE---EEEEEC------SSCEE
T ss_pred             EEEeccCCcc------ccccccccccccccccccccccccc--ccccccccccccccccc---cccccc------ccccc
Confidence            9999986311      1111223346778899999999998  45555678999999652   111111      22678


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc--ceeE
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQE  247 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~  247 (351)
                      +++|+|+++.+++++.|+.|++||+++++........|   |.+++|+|++. ++++++.|+.|++||+.+...  ....
T Consensus       141 ~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         141 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            89999999999999999999999998876544333233   99999999998 799999999999999986332  2345


Q ss_pred             eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeecc-ccceEEEEEeCCCC
Q 018697          248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSRE  326 (351)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  326 (351)
                      +..|..+|++++|+|++ .+|++|+.|+.|++||++...                 ...+..... +...|..+.|. ++
T Consensus       220 ~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~-~~  280 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPS-----------------DHPIIIKGAHAMSSVNSVIWL-NE  280 (299)
T ss_dssp             CCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTT-----------------SCCEEETTSSTTSCEEEEEEE-ET
T ss_pred             ccccccccccccccccc-cceEEEcCCCEEEEEECCCCC-----------------cceEEEecCCCCCcEEEEEEC-CC
Confidence            66799999999999999 999999999999999998711                 122222233 44567777665 45


Q ss_pred             CceEEEeeeCCeEEEeecC
Q 018697          327 PWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       327 ~~~l~s~~~dg~v~vw~~~  345 (351)
                      + +|++++.|+.|++||++
T Consensus       281 ~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         281 T-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             T-EEEEEETTSCEEEEECC
T ss_pred             C-EEEEEeCCCEEEEEecc
Confidence            6 79999999999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-35  Score=245.41  Aligned_cols=248  Identities=20%  Similarity=0.272  Sum_probs=216.0

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|++++|+|+++.|+++    +.|++|+|||+.         +.+.+.++.+|...|.+++|+|++.. ++.
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~----s~Dg~i~iWd~~---------~~~~~~~~~~h~~~V~~~~~~~~~~~-~~~   76 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSA----SEDATIKVWDYE---------TGDFERTLKGHTDSVQDISFDHSGKL-LAS   76 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEE----ESSSCEEEEETT---------TCCCCEEECCCSSCEEEEEECTTSSE-EEE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEE----eCCCeEEEEECC---------CCCEEEEEeCCCCcEEEEeeeccccc-ccc
Confidence            3577999999999999999888875    789999999998         67888899999999999999999983 555


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEc
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY  216 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~  216 (351)
                      +..++.+.+|+.........     ..+|...+.++.|+|+++.+++++.|+.+++||+++++....+....  +.+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             EETTSCCCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccccccc-----cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence            57889999999875432222     23456689999999999999999999999999999988877776322  999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCC-------------------CeEEEeeCCCeE
Q 018697          217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD-------------------GFILSAGTDSTV  277 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~l~s~~~dg~i  277 (351)
                      +|++. ++++++.|+.|++|+++. ...+..+..|...+.++.|+|++.                   .++++++.|+.|
T Consensus       152 ~~~~~-~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         152 NQDGT-LIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             CTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ccCCC-EEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence            99998 899999999999999997 667888899999999999988641                   468999999999


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++||+++                   ++++.++.+|...|.+++|+|+++ +|++++.||.|++||+++.
T Consensus       230 ~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         230 KMWDVST-------------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             EEEETTT-------------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTS
T ss_pred             EEEECCC-------------------CcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCC
Confidence            9999998                   889999999999999999999998 8999999999999999754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=250.36  Aligned_cols=289  Identities=15%  Similarity=0.155  Sum_probs=207.8

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCC-CeEEEEeeecCC-cceeeeeeCCC--CCceEEEEeecCCcceEEE
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG-TELICEGLFSHP-NEIWDLSSCPF--DQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~h~-~~v~~i~~~~~--~~~l~~~~~~~~~d~~i~v   95 (351)
                      ..+.+++++.+++++.     .+.+.+..+.... .......+.+|. ..|++++|+|+  +.+|++    ++.|++|+|
T Consensus        21 t~l~~~~~~~~la~~~-----~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las----gs~Dg~i~i   91 (325)
T d1pgua1          21 THLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDESGKVIV   91 (325)
T ss_dssp             CCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETTSEEEE
T ss_pred             EEEEECCCCCEEEEEe-----CCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE----EeCCCCEEE
Confidence            3456777888888763     2333333333221 122335566775 68999999984  445555    479999999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeee
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG  174 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  174 (351)
                      ||+....... .........+..|.++|.+++|+++++.+++++ +.++.+.+|+.+++.....     ..+|...|.++
T Consensus        92 Wd~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~  165 (325)
T d1pgua1          92 WGWTFDKESN-SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-----VSGHSQRINAC  165 (325)
T ss_dssp             EEEEEEGGGT-EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE-----CCSCSSCEEEE
T ss_pred             eeecCCccee-eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee-----eeecccccccc
Confidence            9987321100 001122234567889999999999999644444 4578899999986543322     23567799999


Q ss_pred             EECCCCCc-EEEeecCCeEEEEEcccCCcCceeec--ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe
Q 018697          175 AWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL  248 (351)
Q Consensus       175 ~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  248 (351)
                      +|+|+++. +++++.|+.+++||++..+....+..  .+   |.+++|+|++..++++++.|+.|++||+++ .+.+..+
T Consensus       166 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l  244 (325)
T d1pgua1         166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYI  244 (325)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEEC
T ss_pred             cccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-ccccccc
Confidence            99999887 56688999999999987665444432  22   999999998655899999999999999997 6788899


Q ss_pred             eCCCCceeEEEec---CCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccce--EEEEEeC
Q 018697          249 PGHTHWTWAVCCN---PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS--VYGLAWS  323 (351)
Q Consensus       249 ~~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~  323 (351)
                      .+|..++..+.|+   |++ .+|++++.|+.|+|||++.                   ++++..+..|...  +..+++.
T Consensus       245 ~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  304 (325)
T d1pgua1         245 EDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTT-------------------SKCVQKWTLDKQQLGNQQVGVV  304 (325)
T ss_dssp             CBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTT-------------------TEEEEEEECCTTCGGGCEEEEE
T ss_pred             cccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCC-------------------CCEEEEEEecCCcccCeEEEEE
Confidence            9999888777766   677 8999999999999999998                   7888777655432  3333443


Q ss_pred             CCCCceEEEeeeCCeEEEeec
Q 018697          324 SREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       324 ~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      +.+..+|++++.||.|++||+
T Consensus       305 ~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         305 ATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTEEEEEETTSCEEEEET
T ss_pred             ECCCCEEEEEECCCEEEEEEC
Confidence            332236899999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=248.60  Aligned_cols=258  Identities=15%  Similarity=0.214  Sum_probs=195.7

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeee------------------eeccc
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA------------------LDAHV  120 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~------------------~~~h~  120 (351)
                      ....+|.+.|++++|+|+|++|+++     .|+.|+||++.+         ++.+..                  ...|.
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg-----~d~~i~iW~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATG-----CNKTTQVYRVSD---------GSLVARLSDDSAANKDPENLNTSSSPSSD  121 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEE-----CBSCEEEEETTT---------CCEEEEECC-----------------CCC
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEE-----eCCeEEEEEecc---------cceEeeecccccccccccccccccccCCC
Confidence            3445799999999999999887663     488999999873         233322                  23577


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccC
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM  200 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  200 (351)
                      ..|++++|+|+++. +++++.|+.|++||...+....     ...+|...|.++.|++++..+++++.++.+++||+++.
T Consensus       122 ~~V~~l~~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         122 LYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-----ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             CBEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEECCCCCc-ceeccccccccccccccccccc-----ccccccccccccccccccccccccccceeeeeeecccc
Confidence            78999999999984 6777899999999998643322     22356779999999999999999999999999999987


Q ss_pred             CcCceeecce-eEEEEcCC-CCCcEEEEecCCCeEEEEecccCCcceeEe-------eCCCCceeEEEecCCCCCeEEEe
Q 018697          201 GKTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQEL-------PGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       201 ~~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      .......... ..++.+.+ ++. +|++++.|+.|++||.++ ...+..+       .+|...|.+++|+|++ .+|+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~  272 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSG  272 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS-SEEEEE
T ss_pred             ccccccccccccccccccCCCCC-eEEEEcCCCeEEEeeccc-CccceeeccccccccCCCCCEEEEEECCCC-CEEEEE
Confidence            6665555333 55555655 555 899999999999999987 4334333       4688999999999999 999999


Q ss_pred             eCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       272 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +.|+.|++||++..........       ............|...|.+++|+|+++ +|++|+.||.|++||+++.
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDSKT-------PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             ETTSEEEEEEC----------------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTC
T ss_pred             ECCCcEEEEeccCCcccccccc-------ccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCC
Confidence            9999999999986322111000       011344556677889999999999998 8999999999999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=231.31  Aligned_cols=249  Identities=13%  Similarity=0.163  Sum_probs=193.5

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc-ccceeEEEecCCCC-CcEEEEecCC
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGR-HDKLVSIDEE  143 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~~~~~~~~d~  143 (351)
                      +.+.+++|+|++..|+.+.   +....|+.|+...       .....+..+.+| ...|++++|+|+.. .++++++.||
T Consensus        18 ~~~t~l~~~~~~~~la~~~---~~~~~i~~~~~~~-------~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPC---GKSAFVRCLDDGD-------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEE---TTEEEEEECCSSC-------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEe---CCCEEEEEEeCCC-------CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC
Confidence            4667999999999988763   4555567777541       234556677777 46899999998543 2344568899


Q ss_pred             cEEEEEcCCCCCCccccc---ccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcccCCcCceeecce---eEEEE
Q 018697          144 NIFLWSLDCSNKNAQVQS---KQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH---VRNVD  215 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~---v~~~~  215 (351)
                      +|+|||+...........   .....|..+|.+++|+++++++++++  .++.+++|+.++++.+..+. +|   +.+++
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~  166 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACH  166 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEE
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-eccccccccc
Confidence            999999975443322221   11234566899999999999988776  46789999999888777776 44   99999


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeE---eeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQE---LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      |+|++++++++++.|+.+++||.+. .+....   ...|...|.+++|+|++..+|++++.|+.|++||+++        
T Consensus       167 ~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~--------  237 (325)
T d1pgua1         167 LKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--------  237 (325)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--------
T ss_pred             ccccccceEEEeecccccccccccc-cccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc--------
Confidence            9999987788999999999999875 333333   3467788999999998658999999999999999998        


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeC---CCCCceEEEeeeCCeEEEeecCc
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWS---SREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                 ++.+..+.+|..++.++.|+   |+++ +|++++.|+.|+|||++.
T Consensus       238 -----------~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         238 -----------GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTT  282 (325)
T ss_dssp             -----------CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTT
T ss_pred             -----------ccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCC
Confidence                       88888998888777666655   6777 899999999999999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-33  Score=229.20  Aligned_cols=243  Identities=13%  Similarity=0.145  Sum_probs=183.8

Q ss_pred             EEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcE
Q 018697           57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK  136 (351)
Q Consensus        57 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  136 (351)
                      ..+.+.+|.+.|.+++|+|    |+++    +.|++|++||+.         +.     ...|...|.++++++++.  +
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sg----s~Dg~v~~Wd~~---------~~-----~~~h~~~V~~~~~~~~~~--~   60 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISG----SYDGRIMEWSSS---------SM-----HQDHSNLIVSLDNSKAQE--Y   60 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEE----ETTSCEEETTTT---------EE-----ECCCCSCEEEEECCSTTC--C
T ss_pred             eeEEECCCCCceEEEEECc----EEEE----eCCCeEEEEECC---------CC-----CCCCCCCEEEEEecCCCe--E
Confidence            3467889999999999987    6664    799999999987         22     357999999999998765  6


Q ss_pred             EEEecCCcEEEEEcCCCCCCccccc-----------c----------cccC-----cccceeeeEECCCCCcEEEeecC-
Q 018697          137 LVSIDEENIFLWSLDCSNKNAQVQS-----------K----------QSSG-----MLHYLSGGAWDPHDVNAVAATCE-  189 (351)
Q Consensus       137 ~~~~~d~~v~iwd~~~~~~~~~~~~-----------~----------~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-  189 (351)
                      ++++.|+++++|++...........           .          ...+     ........++++++..+++++.+ 
T Consensus        61 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred             EEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeecccc
Confidence            7778899999998764211000000           0          0000     00012233566777888888766 


Q ss_pred             CeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC--
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--  264 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--  264 (351)
                      +.+++|++...+....+...+   +.+++|+|++. +|++|+.||.|++||+.........+..|..+|.+++|+|.+  
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccc
Confidence            479999987665544444333   99999999998 899999999999999987443344567899999999998754  


Q ss_pred             -------CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCC
Q 018697          265 -------DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG  337 (351)
Q Consensus       265 -------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  337 (351)
                             ..+|++|+.|++|++||++.                  ..+.+..+.+|...|++++|+|++  .|++++.|+
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~------------------~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~  279 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKR------------------PMKIIKALNAHKDGVNNLLWETPS--TLVSSGADA  279 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSC------------------TTCCEEETTSSTTCEEEEEEEETT--EEEEEETTS
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCC------------------CCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCC
Confidence                   26899999999999999976                  145677778999999999999975  488999999


Q ss_pred             eEEEeec
Q 018697          338 RVVVESV  344 (351)
Q Consensus       338 ~v~vw~~  344 (351)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-31  Score=224.23  Aligned_cols=248  Identities=12%  Similarity=0.186  Sum_probs=195.9

Q ss_pred             cceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceE
Q 018697           14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA   93 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i   93 (351)
                      .+...|..+.++++...|+.|+    .++.|++|++....   ....+..|...|.+++|+|++..++++    +.|+.+
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs----~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~----~~d~~i  121 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSAS----QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACG----GLDNIC  121 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEE----ETTCCE
T ss_pred             CCCCCEEEEEECCCCCEEEEEE----CCCceeeeecccce---eEEEEecccccEEeeEeeccceeeeee----ccccee
Confidence            3445688889999998888774    68999999987542   345677899999999999999988885    689999


Q ss_pred             EEEEcccccCCC------------------------------------CCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           94 AIWQIPELYGQL------------------------------------NSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        94 ~vw~~~~~~~~~------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ++|+........                                    .............+...+....+.+.+. +++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  200 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFV  200 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-eeE
Confidence            999976431100                                    0001111122233455677778888777 366


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce----eEE
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRN  213 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----v~~  213 (351)
                      +++.|+.|++||+.++.....     ..+|...|.+++|+|++++|++++.|+.|++||++.......+....    +.+
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~-----~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQT-----FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEE-----ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EeecCceEEEEECCCCcEEEE-----EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            678899999999986543222     23567799999999999999999999999999999877665554222    999


Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                      ++|+|+++ +|++|+.||.|++||+++ .+++..+.+|..+|++++|+|++ .+|++|+.||.|++||
T Consensus       276 ~~~s~~~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         276 VSFSKSGR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECSSSC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             EEECCCCC-EEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence            99999998 899999999999999997 67899999999999999999999 9999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-31  Score=225.53  Aligned_cols=245  Identities=13%  Similarity=0.176  Sum_probs=193.1

Q ss_pred             EeeecCCcce-eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEE
Q 018697           59 EGLFSHPNEI-WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL  137 (351)
Q Consensus        59 ~~~~~h~~~v-~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  137 (351)
                      ..+.+|.+.| .|++|  ++++|+++    +.|++|+|||+.         +.+.+.++.+|.++|++++|+|++.  ++
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tg----s~Dg~i~vWd~~---------~~~~~~~l~~H~~~V~~l~~s~~~~--l~   68 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITG----ADDKMIRVYDSI---------NKKFLLQLSGHDGGVWALKYAHGGI--LV   68 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEE----ETTTEEEEEETT---------TTEEEEEEECCSSCEEEEEEETTTE--EE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEE----eCCCeEEEEECC---------CCcEEEEEECCCCCEEEEEEcCCCE--EE
Confidence            4578999886 55555  56777764    799999999998         6789999999999999999998653  77


Q ss_pred             EEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--------
Q 018697          138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------  209 (351)
Q Consensus       138 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------  209 (351)
                      +++.|+.|++|++...........   ..+........+.+++..+++++.|+.|++||+++..........        
T Consensus        69 s~s~D~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          69 SGSTDRTVRVWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECC---CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEeccccccccccccccccccccc---ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            889999999999986433322222   122335566778889999999999999999999876543222110        


Q ss_pred             --------------e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          210 --------------H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       210 --------------~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                                    + .....+.+++. +++++..|+.|++||+++ .+.+....++...+.++.|+|++ .++++++.|
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d  222 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHER-KRCISASMD  222 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTT-TEEEEEETT
T ss_pred             ccccccceeeeeeeccccccccccccc-eeeeecccceeeeeeccc-ccceeeeeccccccccccccccc-eeeeccccc
Confidence                          1 11233445666 789999999999999987 66788888899999999999999 999999999


Q ss_pred             CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       275 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      +.|++||.+.                   +.++..+.+|...|.+++|++  + +|++++.||.|++||+++..
T Consensus       223 ~~i~i~d~~~-------------------~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         223 TTIRIWDLEN-------------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             SCEEEEETTT-------------------CCEEEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCC
T ss_pred             ceEEeeeccc-------------------ccccccccccccccccccccc--c-eeeeeecccccccccccccc
Confidence            9999999998                   888999999999999999975  4 79999999999999997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-31  Score=222.95  Aligned_cols=242  Identities=16%  Similarity=0.285  Sum_probs=184.8

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      ..+.+|.+.|.+ ++++++++|+++    +.|++|+|||+.         +++++.++.+|...|.+++|+|+   ++++
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sg----s~Dg~i~vWd~~---------~~~~~~~~~~h~~~V~~v~~~~~---~l~s   72 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSG----SDDNTLKVWSAV---------TGKCLRTLVGHTGGVWSSQMRDN---IIIS   72 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEE----ETTSCEEEEETT---------TCCEEEECCCCSSCEEEEEEETT---EEEE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEE----eCCCeEEEEECC---------CCCEEEEEeCCCCCEEEEEeCCC---cccc
Confidence            557899999865 466678888775    799999999998         67889999999999999999875   4777


Q ss_pred             EecCCcEEEEEcCCCCCCccccc---------------------------------------------------------
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQS---------------------------------------------------------  161 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~---------------------------------------------------------  161 (351)
                      ++.|+.+++|+............                                                         
T Consensus        73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS  152 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred             ceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence            78999999998764211000000                                                         


Q ss_pred             ------------------ccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCC
Q 018697          162 ------------------KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKK  221 (351)
Q Consensus       162 ------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~  221 (351)
                                        ....+|.  .....+.+++..+++++.|+.|++||++.++.+..+....  +.++++++  +
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~  228 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N  228 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--T
T ss_pred             ecCCCeEEEeecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--C
Confidence                              0001111  1223445567889999999999999999988777766322  77777765  4


Q ss_pred             cEEEEecCCCeEEEEecccCCcceeEeeC---CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccC
Q 018697          222 HLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES  298 (351)
Q Consensus       222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  298 (351)
                       ++++++.|+.|++||+.. .+....+..   |...+.++.+++   .++++++.||+|++||+++              
T Consensus       229 -~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~t--------------  289 (342)
T d2ovrb2         229 -ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT--------------  289 (342)
T ss_dssp             -EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTT--------------
T ss_pred             -EEEEEcCCCEEEEEeccc-ccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCC--------------
Confidence             799999999999999987 445555554   556667776654   7899999999999999998              


Q ss_pred             Ccccccccceee-----ccccceEEEEEeCCCCCceEEEeeeCCe----EEEeecCc
Q 018697          299 PNQRANSLLNSY-----SDYEDSVYGLAWSSREPWIFASLSYDGR----VVVESVKP  346 (351)
Q Consensus       299 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~----v~vw~~~~  346 (351)
                           ++++..+     .+|...|++++|+|++. ++++|+.||+    |++||++.
T Consensus       290 -----g~~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         290 -----GEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -----CCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             -----CCEEEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence                 7777665     35778899999999987 8999998885    99999875

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=9.6e-31  Score=226.19  Aligned_cols=268  Identities=13%  Similarity=0.170  Sum_probs=176.0

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecccccee------EEEecCCCC
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKIN------CVLWWSSGR  133 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~------~~~~~~~~~  133 (351)
                      ...+|.+.|.++++++  ++++++    +.|++|+|||.......  . ..........|...+.      .+..+....
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~----S~D~~iriWd~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSC----SGDGYLKVWDNKLLDNE--N-PKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   79 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEE----ETTSEEEEEESBCCTTC--C-GGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEE----ECCCeEEEEECCCCCCC--c-ccceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence            3468999999999875  467765    68999999997632110  1 1111222223443322      222232223


Q ss_pred             CcEEEEecCCcEEEEEcCCCCCCccccccc-----ccCcccceeeeEECCC-----CCcEEEeecCCeEEEEEcccCCcC
Q 018697          134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-----SSGMLHYLSGGAWDPH-----DVNAVAATCESSVQFWDLRSMGKT  203 (351)
Q Consensus       134 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~  203 (351)
                      .++++++.||.|++|++.............     ...+...+..++|.++     +.++++++.|+.+++||+......
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            234445789999999987654433322211     1123345677788765     356888999999999998643210


Q ss_pred             ---------c--ee----e----cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeE------eeCCCCceeE
Q 018697          204 ---------N--SI----E----HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE------LPGHTHWTWA  257 (351)
Q Consensus       204 ---------~--~~----~----~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~v~~  257 (351)
                               .  .+    .    ... +.+++|+|++  ++++|+.|++|++||+++ .+++..      +.+|..+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecc-cccccccccccccccccceEEE
Confidence                     0  00    0    011 8899999997  689999999999999987 444443      4568999999


Q ss_pred             EEecCCCCCeEEEeeCCC---eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          258 VCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       258 ~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      ++|+|+| .+|++|+.|+   .|++||++.+.......      ...........+.+|...|++++|+|+++ +|++++
T Consensus       237 l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~------~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s  308 (393)
T d1sq9a_         237 VKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLS------VPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAG  308 (393)
T ss_dssp             EEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEEC------BC--------CCBSBSSCEEEEEECSSSS-EEEEEE
T ss_pred             ccccccc-ceeeeecCCCCcceeeecccccceeeeeec------cccccccceeeeecccCceeeeccCCCCC-eeEEEC
Confidence            9999999 9999999987   49999998721110000      00001222334458999999999999999 899999


Q ss_pred             eCCeEEEeecCcc
Q 018697          335 YDGRVVVESVKPF  347 (351)
Q Consensus       335 ~dg~v~vw~~~~~  347 (351)
                      .|++|++||+++.
T Consensus       309 ~D~~v~vWd~~~g  321 (393)
T d1sq9a_         309 WDGKLRFWDVKTK  321 (393)
T ss_dssp             TTSEEEEEETTTT
T ss_pred             CCCEEEEEECCCC
Confidence            9999999999763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-30  Score=210.13  Aligned_cols=244  Identities=18%  Similarity=0.316  Sum_probs=183.4

Q ss_pred             eeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE
Q 018697           60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        60 ~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      ....|...|+|++|  ++++|+++    +.|++|+|||+.         +.+++.++.+|.++|++++|+  ++ +++++
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sg----s~Dg~i~vWd~~---------~~~~~~~l~~H~~~V~~v~~~--~~-~l~s~   71 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSG----LRDNTIKIWDKN---------TLECKRILTGHTGSVLCLQYD--ER-VIITG   71 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEE----ESSSCEEEEESS---------SCCEEEEECCCSSCEEEEECC--SS-EEEEE
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEE----eCCCeEEEEECC---------CCcEEEEEecCCCCEeeeecc--cc-eeecc
Confidence            34567889998765  67787774    799999999998         678899999999999999884  44 47777


Q ss_pred             ecCCcEEEEEcCCCCCCccccc--------------------------------------ccccCcccceeeeEECCCCC
Q 018697          140 IDEENIFLWSLDCSNKNAQVQS--------------------------------------KQSSGMLHYLSGGAWDPHDV  181 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~~~~~~  181 (351)
                      +.|+.|++|++..+........                                      .....|...+..+.+.  ..
T Consensus        72 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  149 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK  149 (293)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT
T ss_pred             cccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--cc
Confidence            9999999999976432111100                                      0011223344444443  45


Q ss_pred             cEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE
Q 018697          182 NAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC  259 (351)
Q Consensus       182 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  259 (351)
                      .+++++.|+.|++||+++++.+..+....  +..+.++  +. .+++++.|+.|++||+++ ...+..+.+|...+..+ 
T Consensus       150 ~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~-  224 (293)
T d1p22a2         150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCI-  224 (293)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEE-
T ss_pred             ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CC-eEEEecCCCEEEEEeccc-ceeeeeecccceeeeec-
Confidence            67888899999999999998877776333  6666665  44 789999999999999997 66788888888888765 


Q ss_pred             ecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeE
Q 018697          260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV  339 (351)
Q Consensus       260 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v  339 (351)
                       ++++ .+|++++.||.|++||+.........          ....++..+.+|...|++++|++  . +|++++.||+|
T Consensus       225 -~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~H~~~V~~v~~d~--~-~l~s~s~Dg~i  289 (293)
T d1p22a2         225 -RFDN-KRIVSGAYDGKIKVWDLVAALDPRAP----------AGTLCLRTLVEHSGRVFRLQFDE--F-QIVSSSHDDTI  289 (293)
T ss_dssp             -ECCS-SEEEEEETTSCEEEEEHHHHTSTTSC----------TTTTEEEEECCCSSCCCCEEECS--S-CEEECCSSSEE
T ss_pred             -cccc-eEEEEEcCCCEEEEEECCCCcccccc----------CCceeeEEecCCCCCEEEEEEcC--C-EEEEEecCCEE
Confidence             4556 89999999999999998752211110          11356778889999999999964  4 79999999999


Q ss_pred             EEee
Q 018697          340 VVES  343 (351)
Q Consensus       340 ~vw~  343 (351)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.1e-30  Score=215.88  Aligned_cols=269  Identities=13%  Similarity=0.078  Sum_probs=188.3

Q ss_pred             EeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEE
Q 018697           59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV  138 (351)
Q Consensus        59 ~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  138 (351)
                      +...+|++.|++|+|+|++++|+++    +.|++|+|||+...      .....+....+|..+|.+++|+|++..++++
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~----s~Dg~v~iwd~~~~------~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s   74 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQ------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETT------TTEEEEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEE----ECCCeEEEEEccCC------CcceEEEEecCCCCCEEEEEEeCCCCCEEEE
Confidence            4556899999999999999998885    68999999999731      0112233344799999999999987765777


Q ss_pred             EecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc---e-----
Q 018697          139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H-----  210 (351)
Q Consensus       139 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-----  210 (351)
                      ++.|+.|++|++............    +........+.++...+++++.++.+++||++.+.........   +     
T Consensus        75 g~~d~~v~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSPSFQALTNN----EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             EETTSCEEEECSSSSSSEEECBSC----CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             cccccceeeeeccccccccccccc----ccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence            789999999999865443332221    1223445556667788999999999999999876544433211   1     


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc--eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCC
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD  288 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  288 (351)
                      .....+.+.+. .+++++.|+.|++||++.....  ......+...+.+..+.+.....+++++.||.+.+|+.......
T Consensus       151 ~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         151 NKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            44556667776 7899999999999999864322  22223445556666666555489999999999999998763222


Q ss_pred             CCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .........    ...........|...|++++|+|+++ +|++|+.||.|++||+++.
T Consensus       230 ~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         230 YNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTT
T ss_pred             eecccccee----eeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCC
Confidence            111100000    00111222345677899999999999 8999999999999999753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-30  Score=217.06  Aligned_cols=291  Identities=9%  Similarity=0.045  Sum_probs=209.1

Q ss_pred             ceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEE
Q 018697           15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~   94 (351)
                      +...|..+.++|+...|+.|+    .|+.|++|++.............+|.+.|.+++|+|++..++++   ++.|+.|+
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s---g~~d~~v~   82 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV---GTVQGEIL   82 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE---EETTSCEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEE----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE---ccccccee
Confidence            455688899999998888875    58999999998877666666677899999999999987765555   47999999


Q ss_pred             EEEcccccCCCCCCcceeeeeeeccccce-eEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc-cCccccee
Q 018697           95 IWQIPELYGQLNSPQLERIAALDAHVGKI-NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS-SGMLHYLS  172 (351)
Q Consensus        95 vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~v~  172 (351)
                      +|++.         ..........+...+ ....+.++.. .+++++.++.+++||++............. ........
T Consensus        83 ~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          83 KVDLI---------GSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EECSS---------SSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             eeecc---------cccccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceee
Confidence            99988         333334443444333 3444444444 467778999999999875433332222111 11122344


Q ss_pred             eeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc--e---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc---
Q 018697          173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---  244 (351)
Q Consensus       173 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---  244 (351)
                      .+.+.+.+..+++++.|+.|++||++..+........  .   ..+..+.+.....+++++.||.+.+|+.......   
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence            5567778889999999999999999887655443311  1   5566665555458999999999999998642211   


Q ss_pred             -----------eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccc
Q 018697          245 -----------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY  313 (351)
Q Consensus       245 -----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                                 ......|...+++++|+|++ .+|+||+.||.|++||+++                   .+.+..+..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~-------------------~~~l~~~~~~  292 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT-------------------RKKIKNFAKF  292 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT-------------------TEEEEECCCC
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCC-------------------CcEEEEecCC
Confidence                       11123566789999999999 9999999999999999998                   7778777543


Q ss_pred             cceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          314 EDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       314 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      . .+..++|+|+++ ++++++.|+.+++|..
T Consensus       293 ~-~~~~~~~s~~~~-~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         293 N-EDSVVKIACSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             S-SSEEEEEEECSS-EEEEEEECTHHHHCSS
T ss_pred             C-CCEEEEEEeCCC-EEEEEEcCCcEEEeee
Confidence            2 244567778888 7888888888887765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.4e-30  Score=215.67  Aligned_cols=266  Identities=14%  Similarity=0.273  Sum_probs=193.0

Q ss_pred             CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCC
Q 018697           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (351)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (351)
                      +...++.|+    .++.|++|++...   .....+.+|.+.|.+++|+|++ .|+++    +.|+.|++|+..       
T Consensus        22 ~~~~l~tgs----~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~~-~l~s~----s~D~~i~iw~~~-------   82 (355)
T d1nexb2          22 EDNYVITGA----DDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSG----STDRTVRVWDIK-------   82 (355)
T ss_dssp             ETTEEEEEE----TTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETTT-EEEEE----ETTCCEEEEETT-------
T ss_pred             CCCEEEEEe----CCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCCC-EEEEE----eccccccccccc-------
Confidence            445666663    6899999998653   2346778999999999999854 66664    799999999988       


Q ss_pred             CCcceeeeeee--ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc------------------------
Q 018697          107 SPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ------------------------  160 (351)
Q Consensus       107 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~------------------------  160 (351)
                        .........  .+...+....+.+++.. +++++.|+.|++||+.+........                        
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          83 --KGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             --TTEEEEEECCCSSCEEEEEEEEETTEEE-EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             --ccccccccccccccccccccccccccce-eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence              333333332  33344555667777763 5666888999999987532110000                        


Q ss_pred             ----------------------------------cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCcee
Q 018697          161 ----------------------------------SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI  206 (351)
Q Consensus       161 ----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  206 (351)
                                                        .....++...+.++.|+|+++.+++++.|+.|++||++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                                              0001123345677889999999999999999999999999887777


Q ss_pred             ecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEE-ecCCCCCeEEEeeCCCeEEEEEc
Q 018697          207 EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-CNPEYDGFILSAGTDSTVNLWLV  282 (351)
Q Consensus       207 ~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~s~~~dg~i~iwd~  282 (351)
                      . +|   |.++++++  + ++++|+.||.|++||+++.   ...+..|...+..+. +++++ .++++| .|+.|++||+
T Consensus       240 ~-~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~  310 (355)
T d1nexb2         240 Q-GHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNL  310 (355)
T ss_dssp             C-CCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTC---CEEEEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEET
T ss_pred             c-ccccccccccccc--c-eeeeeeccccccccccccc---ceecccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEEC
Confidence            6 45   89999975  3 7999999999999999863   344555667776665 45555 666655 5899999999


Q ss_pred             CCCCCCCCCCcccccCCcccccccce-eeccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          283 STSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                      ++                   ++++. .+.+|..+|++++|+|+ . ++++++.||.++||.+
T Consensus       311 ~t-------------------g~~~~~~~~~~~~~V~~v~~~~~-~-~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         311 RS-------------------GKLVHANILKDADQIWSVNFKGK-T-LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TT-------------------CCBCCSCTTTTCSEEEEEEEETT-E-EEEEEESSSCEEEEEE
T ss_pred             CC-------------------CCEEEEEecCCCCCEEEEEEcCC-e-EEEEEECCCcEEEEEE
Confidence            98                   77764 46789999999999986 3 7889999998777654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-29  Score=216.45  Aligned_cols=278  Identities=14%  Similarity=0.197  Sum_probs=184.8

Q ss_pred             CCCCEEEEEEeCCCCC---eEEEEeeecCCcceeeee------eCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCc
Q 018697           39 KEENEVHLLRLSSGGT---ELICEGLFSHPNEIWDLS------SCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ  109 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~i~------~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~  109 (351)
                      ..++.|++|+......   .........|...+..+.      .++....++++   ++.|+.|++|++......... .
T Consensus        31 S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~dg~v~~w~~~~~~~~~~~-~  106 (393)
T d1sq9a_          31 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT---TSFSGDLLFYRITREDETKKV-I  106 (393)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE---EETTSCEEEEEEEECTTTCCE-E
T ss_pred             ECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE---EeCCCcEEEEEccCCCceeee-e
Confidence            3589999998654322   112233344555444333      22223334444   478999999998732111000 0


Q ss_pred             ceee--eeeeccccceeEEEecCCCC----CcEEEEecCCcEEEEEcCCCCCCcccc-------------cccccCcccc
Q 018697          110 LERI--AALDAHVGKINCVLWWSSGR----HDKLVSIDEENIFLWSLDCSNKNAQVQ-------------SKQSSGMLHY  170 (351)
Q Consensus       110 ~~~~--~~~~~h~~~v~~~~~~~~~~----~~~~~~~~d~~v~iwd~~~~~~~~~~~-------------~~~~~~~~~~  170 (351)
                      ....  .....+...+..++|.++..    ..+++++.|+.+++|++..........             ......+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (393)
T d1sq9a_         107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  186 (393)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCc
Confidence            0001  11123456678888887643    235666889999999986432111110             1111233446


Q ss_pred             eeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-----ce---eEEEEcCCCCCcEEEEecCCC---eEEEEecc
Q 018697          171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADES---GIHLWDLR  239 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~  239 (351)
                      +.+++|+|++ +|++++.|+.|++||+++++++..+..     +|   |.+++|+|+++ +|++|+.|+   .|++||++
T Consensus       187 ~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccc
Confidence            8899999987 788999999999999998877655542     33   99999999998 899999886   49999998


Q ss_pred             cCCcceeEe-------------eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccc
Q 018697          240 MLKAPIQEL-------------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL  306 (351)
Q Consensus       240 ~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  306 (351)
                      + ++.+..+             .+|...|++++|+|++ ++|+|++.|++|++||+++                   +++
T Consensus       265 ~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~-------------------g~~  323 (393)
T d1sq9a_         265 F-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKT-------------------KER  323 (393)
T ss_dssp             T-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT-------------------TEE
T ss_pred             c-ceeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCC-------------------CCE
Confidence            7 5455544             4799999999999999 9999999999999999998                   788


Q ss_pred             ceeeccccceE---------------------EEEEeCCCCC---------ceEEEeeeCCeEEEee
Q 018697          307 LNSYSDYEDSV---------------------YGLAWSSREP---------WIFASLSYDGRVVVES  343 (351)
Q Consensus       307 ~~~~~~~~~~v---------------------~~~~~~~~~~---------~~l~s~~~dg~v~vw~  343 (351)
                      +.++.+|...|                     .++.|.+.+.         ..+++++.|+.|++|.
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            88887776544                     3444433221         1366777777777775

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1e-28  Score=210.23  Aligned_cols=273  Identities=11%  Similarity=0.043  Sum_probs=193.5

Q ss_pred             cCCC-CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccc
Q 018697           23 KADT-DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL  101 (351)
Q Consensus        23 ~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~  101 (351)
                      .++| ++.+++.+.     .+.+++|++..  +...  . .+|...|.+++|+|+++.|+++.  ...+..|++|++.  
T Consensus         9 ~fSP~dG~~~a~~~-----~g~v~v~d~~~--~~~~--~-~~~~~~v~~~~~spDg~~l~~~~--~~~g~~v~v~d~~--   74 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-----RGQAFIQDVSG--TYVL--K-VPEPLRIRYVRRGGDTKVAFIHG--TREGDFLGIYDYR--   74 (360)
T ss_dssp             EEEECGGGCEEEEE-----TTEEEEECTTS--SBEE--E-CSCCSCEEEEEECSSSEEEEEEE--ETTEEEEEEEETT--
T ss_pred             cccCCCCCEEEEEE-----CCeEEEEECCC--CcEE--E-ccCCCCEEEEEECCCCCEEEEEE--cCCCCEEEEEECC--
Confidence            4677 788888764     47888887754  3332  2 37999999999999999998763  2233479999987  


Q ss_pred             cCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC
Q 018697          102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV  181 (351)
Q Consensus       102 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  181 (351)
                             . .....+..|...|.+++|+|+++. +++++.++.+++|++.++......     ..+...+.+++|+|+++
T Consensus        75 -------~-~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          75 -------T-GKAEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIE-----RSREAMITDFTISDNSR  140 (360)
T ss_dssp             -------T-CCEEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCCEEECTTSC
T ss_pred             -------C-CcEEEeeCCCceEEeeeecccccc-cceeccccccccccccccceeeee-----ecccccccchhhcccee
Confidence                   3 334567789999999999999994 666688999999999865433222     23445788999999999


Q ss_pred             cEEEee----------cCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc------c
Q 018697          182 NAVAAT----------CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------P  244 (351)
Q Consensus       182 ~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~  244 (351)
                      +|+.+.          .++.+++||+.+++......... +..++|+|+|+ .|++++.++.+.+||......      .
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~  219 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSK  219 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBE
T ss_pred             eeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccc
Confidence            998654          24578999999876554444333 88899999998 788899999999998643210      0


Q ss_pred             eeEeeCC----------------------------------------------CCceeEEEecCCCC--CeEEEeeCCCe
Q 018697          245 IQELPGH----------------------------------------------THWTWAVCCNPEYD--GFILSAGTDST  276 (351)
Q Consensus       245 ~~~~~~~----------------------------------------------~~~v~~~~~~~~~~--~~l~s~~~dg~  276 (351)
                      ...+..|                                              ...+..+.+.+.++  .++++++.++.
T Consensus       220 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (360)
T d1k32a3         220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV  299 (360)
T ss_dssp             EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE
T ss_pred             eEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCE
Confidence            1111111                                              11111222222221  24566667889


Q ss_pred             EEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      |++||+..                   .+.    ..|...|.+++|+|||+ .|++++.||.|++|++++..
T Consensus       300 i~~~d~~~-------------------~~~----~~~~~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         300 LLKYDVKT-------------------RKV----TEVKNNLTDLRLSADRK-TVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEETTT-------------------CCE----EEEEEEEEEEEECTTSC-EEEEEETTSCEEEEESSCTT
T ss_pred             EEEEECCC-------------------CeE----EEecCCcCEEEECCCCC-EEEEEECCCeEEEEECCCCC
Confidence            99999876                   332    23455699999999999 89999999999999997643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.5e-24  Score=179.53  Aligned_cols=264  Identities=13%  Similarity=0.123  Sum_probs=199.6

Q ss_pred             eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee
Q 018697           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD  117 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  117 (351)
                      ...++.|.+|++...  ++. ..+ .....+..++|+|++++|+++   ++.++.|++||+.         +.+.+..+.
T Consensus         8 ~~~~~~v~v~D~~t~--~~~-~~i-~~g~~p~~va~spdG~~l~v~---~~~~~~i~v~d~~---------t~~~~~~~~   71 (301)
T d1l0qa2           8 NSESDNISVIDVTSN--KVT-ATI-PVGSNPMGAVISPDGTKVYVA---NAHSNDVSIIDTA---------TNNVIATVP   71 (301)
T ss_dssp             ETTTTEEEEEETTTT--EEE-EEE-ECSSSEEEEEECTTSSEEEEE---EGGGTEEEEEETT---------TTEEEEEEE
T ss_pred             ECCCCEEEEEECCCC--eEE-EEE-ECCCCceEEEEeCCCCEEEEE---ECCCCEEEEEECC---------CCceeeeee
Confidence            346788999987653  332 333 344667899999999998766   4678899999998         677888887


Q ss_pred             ccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEE
Q 018697          118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWD  196 (351)
Q Consensus       118 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd  196 (351)
                      .+. .+..+.|++++..+++++..++.+.+|+..++.....+..      ......+.|+|++..++.++ .++.+.+|+
T Consensus        72 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~  144 (301)
T d1l0qa2          72 AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVIN  144 (301)
T ss_dssp             CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccc-cccccccccccccccccccccceeeecccccceeeeeccc------cccceEEEeecCCCeeeeeeccccceeeee
Confidence            665 4688999999997555557788999999986543333222      22678899999999877654 678999999


Q ss_pred             cccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee---
Q 018697          197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---  272 (351)
Q Consensus       197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---  272 (351)
                      ..+......+.... +..++++|++..++++...++.+.+|+... ......+. ....+..++|++++ ..++.+.   
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g-~~~~v~~~~~  221 (301)
T d1l0qa2         145 TVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDK  221 (301)
T ss_dssp             TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTS-SEEEEEEECS
T ss_pred             ccccceeeecccCCCceEEEeeccccceeeecccccccccccccc-eeeeeccc-ccCCcceeeccccc-cccccccccc
Confidence            99988777777545 899999999996555555667888888775 44455554 34567889999999 6555443   


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .++.|++||..+                   ++.+..+..+. .+.+++|+|+|++++++++.|+.|++||+++.
T Consensus       222 ~~~~v~v~D~~t-------------------~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         222 YFNTVSMIDTGT-------------------NKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             SCCEEEEEETTT-------------------TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eeeeeeeeecCC-------------------CeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            356899999998                   77777776544 47999999999966688889999999998764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.2e-26  Score=188.84  Aligned_cols=245  Identities=14%  Similarity=0.112  Sum_probs=173.4

Q ss_pred             eeeeccccceeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee
Q 018697            7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS   86 (351)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~   86 (351)
                      ..+..+..+...|..+.+++    |+.|    ..++.|++|++..        ...+|...|.++++++++ .++++   
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sg----s~Dg~v~~Wd~~~--------~~~~h~~~V~~~~~~~~~-~~~s~---   63 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISG----SYDGRIMEWSSSS--------MHQDHSNLIVSLDNSKAQ-EYSSI---   63 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEE----ETTSCEEETTTTE--------EECCCCSCEEEEECCSTT-CCEEE---
T ss_pred             ceeEEECCCCCceEEEEECc----EEEE----eCCCeEEEEECCC--------CCCCCCCCEEEEEecCCC-eEEEE---
Confidence            34556666777788888865    5544    4688888876542        235799999999999765 55554   


Q ss_pred             cCCcceEEEEEcccccCCC-------------------------CCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           87 TGESYGAAIWQIPELYGQL-------------------------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~-------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                       +.|+++++|++.......                         .....+.+..+. +...  ..++++++.. +++++.
T Consensus        64 -s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~v~~~  138 (287)
T d1pgua2          64 -SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNY-VAVGLE  138 (287)
T ss_dssp             -ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSE-EEEEET
T ss_pred             -eeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeeccCcc-eeeecc
Confidence             688999999876321000                         000111122221 1122  3455667764 455544


Q ss_pred             -CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcC
Q 018697          142 -EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD  217 (351)
Q Consensus       142 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~  217 (351)
                       ++.+++|++........    ....+...+.+++|+|++.+|++++.||.|++||+.+++........|   |.+++|+
T Consensus       139 ~~~~v~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFD----LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK  214 (287)
T ss_dssp             TTSCEEEEETTEEEEEEE----CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             ccceeeeeeccccceeee----eeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeec
Confidence             46899999874322221    122345589999999999999999999999999999877554433344   9999998


Q ss_pred             CCCC---------cEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEc
Q 018697          218 TKKK---------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLV  282 (351)
Q Consensus       218 ~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  282 (351)
                      |.+.         .++++|+.|+.|++||+++..+.+..+.+|...|++++|+|++  .|++++.|+.|++|++
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            7542         3799999999999999987677788888999999999999976  5889999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=5.5e-25  Score=191.74  Aligned_cols=276  Identities=9%  Similarity=0.052  Sum_probs=187.7

Q ss_pred             eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceee---e
Q 018697           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI---A  114 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---~  114 (351)
                      ...++.|.+|++....   ....+..| ..+..++|+|||++++++    +.|++|++||+..       .+....   .
T Consensus        38 ~~~dg~v~vwD~~t~~---~~~~l~~g-~~~~~vafSPDGk~l~~~----~~d~~v~vwd~~t-------~~~~~~~~i~  102 (426)
T d1hzua2          38 LRDAGQIALVDGDSKK---IVKVIDTG-YAVHISRMSASGRYLLVI----GRDARIDMIDLWA-------KEPTKVAEIK  102 (426)
T ss_dssp             ETTTTEEEEEETTTCS---EEEEEECC-SSEEEEEECTTSCEEEEE----ETTSEEEEEETTS-------SSCEEEEEEE
T ss_pred             EcCCCEEEEEECCCCc---EEEEEeCC-CCeeEEEECCCCCEEEEE----eCCCCEEEEEccC-------CceeEEEEEe
Confidence            3578999999987642   23455555 468999999999999875    6899999999972       122222   2


Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc------cCcccceeeeEECCCCCcEEEee-
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS------SGMLHYLSGGAWDPHDVNAVAAT-  187 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~-  187 (351)
                      ...+|...+.+++|+|||+++++++..++.+.+||..+............      ..+......+.+++++..++... 
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence            23467777888899999997555557899999999987543322211110      01122345567777777666554 


Q ss_pred             cCCeEEEEEcccCCcCce--eecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC----------------------
Q 018697          188 CESSVQFWDLRSMGKTNS--IEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK----------------------  242 (351)
Q Consensus       188 ~d~~i~iwd~~~~~~~~~--~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------------  242 (351)
                      ..+.+.+++.........  +..+. +..++|+|++++++++...+..+.+++.....                      
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence            346666676665543332  22223 88999999998666655555666666543210                      


Q ss_pred             -------------------------------cceeEeeCCCCceeEEEecCCCCCeEEE-------eeCCCeEEEEEcCC
Q 018697          243 -------------------------------APIQELPGHTHWTWAVCCNPEYDGFILS-------AGTDSTVNLWLVST  284 (351)
Q Consensus       243 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~  284 (351)
                                                     +....+.+|...+..++|+|++ .+|++       ++.|++|++||+.+
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCC
Confidence                                           2344567888889999999999 88884       55688999999988


Q ss_pred             CCCCCCCCcccccCCcccccccceee---------ccccceEEEEEeCCCCCceEEEe----eeCCeEEEeecCccc
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSY---------SDYEDSVYGLAWSSREPWIFASL----SYDGRVVVESVKPFL  348 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~----~~dg~v~vw~~~~~~  348 (351)
                                         ++...++         ..|...|.+++|||||+++++++    +.++.|+|||..+..
T Consensus       342 -------------------~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         342 -------------------LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             -------------------TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             -------------------CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence                               4443332         34556799999999999666664    368899999988653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-25  Score=185.72  Aligned_cols=202  Identities=17%  Similarity=0.263  Sum_probs=150.9

Q ss_pred             cceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec
Q 018697          109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (351)
Q Consensus       109 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (351)
                      ..++...+++|.+.|.+ +++++|++ +++++.|++|+|||+.+++....     ..+|...|.+++|+|  .+|++++.
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~-l~sgs~Dg~i~vWd~~~~~~~~~-----~~~h~~~V~~v~~~~--~~l~s~s~   75 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-----LVGHTGGVWSSQMRD--NIIISGST   75 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-----CCCCSSCEEEEEEET--TEEEEEET
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCE-EEEEeCCCeEEEEECCCCCEEEE-----EeCCCCCEEEEEeCC--Ccccccee
Confidence            55777889999999865 36667773 67779999999999987543322     346777999999987  47888888


Q ss_pred             CCeEEEEEcccCCcCc----------------------------------------eee---------------------
Q 018697          189 ESSVQFWDLRSMGKTN----------------------------------------SIE---------------------  207 (351)
Q Consensus       189 d~~i~iwd~~~~~~~~----------------------------------------~~~---------------------  207 (351)
                      |+.+++|+........                                        .+.                     
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            8888888764321100                                        000                     


Q ss_pred             ------------------cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeE
Q 018697          208 ------------------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       208 ------------------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  268 (351)
                                        .+| .....+.+++. .+++++.||.|++||++. .+++..+..|...+.++.+++   .+|
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~l  230 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD---NIL  230 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEECSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET---TEE
T ss_pred             CCeEEEeecccceeeEEEcCcccccccccCCCC-EEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCC---CEE
Confidence                              001 12233344565 789999999999999997 668888999999999887765   689


Q ss_pred             EEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeec---cccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS---DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       269 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++++.|+.|++||+..                   .+....+.   .|...+.++.+++  . ++++++.||.|++||++
T Consensus       231 ~s~s~d~~i~iwd~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKT-------------------GQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EEEETTSCEEEEETTT-------------------CCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETT
T ss_pred             EEEcCCCEEEEEeccc-------------------ccccccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECC
Confidence            9999999999999987                   45444443   4667788888875  4 89999999999999997


Q ss_pred             c
Q 018697          346 P  346 (351)
Q Consensus       346 ~  346 (351)
                      +
T Consensus       289 t  289 (342)
T d2ovrb2         289 T  289 (342)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.2e-23  Score=169.47  Aligned_cols=235  Identities=15%  Similarity=0.237  Sum_probs=168.0

Q ss_pred             eeEeeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEE
Q 018697           16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~v   95 (351)
                      .+.|..+.+  +..+++.|.    .|+.|++|++....   ....+.+|.+.|.+++|.  ++.|+++    +.|+.|++
T Consensus        15 ~~~V~c~~~--d~~~l~sgs----~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~~--~~~l~s~----s~D~~i~~   79 (293)
T d1p22a2          15 SKGVYCLQY--DDQKIVSGL----RDNTIKIWDKNTLE---CKRILTGHTGSVLCLQYD--ERVIITG----SSDSTVRV   79 (293)
T ss_dssp             CCCEEEEEC--CSSEEEEEE----SSSCEEEEESSSCC---EEEEECCCSSCEEEEECC--SSEEEEE----ETTSCEEE
T ss_pred             CCCEEEEEE--cCCEEEEEe----CCCeEEEEECCCCc---EEEEEecCCCCEeeeecc--cceeecc----cccccccc
Confidence            444554544  566777764    68999999987543   346678999999999884  5566664    79999999


Q ss_pred             EEcccccCC----------------------------------CCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           96 WQIPELYGQ----------------------------------LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        96 w~~~~~~~~----------------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      |++......                                  ...........+..|...|.++.+.+.   .+++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~  156 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASG  156 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEET
T ss_pred             cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccC
Confidence            998642100                                  001111223344567777777776654   2566688


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCC
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTK  219 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~  219 (351)
                      |+.|++||+.+......+     .++...+..+.++  +..+++++.|+.|++||+++.+.+.......  +..  +.++
T Consensus       157 d~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~  227 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTL-----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFD  227 (293)
T ss_dssp             TSEEEEEETTTCCEEEEE-----ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECC
T ss_pred             CCceeeecCCCCcEEEEE-----cccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--cccc
Confidence            999999999875433222     2344467777765  5689999999999999999888776665322  544  4455


Q ss_pred             CCcEEEEecCCCeEEEEecccC--------CcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEE
Q 018697          220 KKHLLVTAADESGIHLWDLRML--------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL  281 (351)
Q Consensus       220 ~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  281 (351)
                      +. +|++|+.||.|++||++..        ..++..+.+|...|++++|+  + .+|+|++.||+|++||
T Consensus       228 ~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 NK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S-SCEEECCSSSEEEEEC
T ss_pred             ce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--C-CEEEEEecCCEEEEeC
Confidence            65 7999999999999998642        23567888999999999995  4 7899999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.1e-23  Score=179.79  Aligned_cols=265  Identities=11%  Similarity=0.024  Sum_probs=183.9

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEE
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW  148 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iw  148 (351)
                      ..+.+..+.+.++++.  .+.|++|+|||+.         +.+.+.++..|. .+..++|+|||++ +++++.|++|++|
T Consensus        22 ~~~~~~~d~~~~~~V~--~~~dg~v~vwD~~---------t~~~~~~l~~g~-~~~~vafSPDGk~-l~~~~~d~~v~vw   88 (426)
T d1hzua2          22 KKQLNDLDLPNLFSVT--LRDAGQIALVDGD---------SKKIVKVIDTGY-AVHISRMSASGRY-LLVIGRDARIDMI   88 (426)
T ss_dssp             SSCCSCCCGGGEEEEE--ETTTTEEEEEETT---------TCSEEEEEECCS-SEEEEEECTTSCE-EEEEETTSEEEEE
T ss_pred             CcccccCCCCeEEEEE--EcCCCEEEEEECC---------CCcEEEEEeCCC-CeeEEEECCCCCE-EEEEeCCCCEEEE
Confidence            3445666655554332  4789999999998         778888998775 5899999999995 5666789999999


Q ss_pred             EcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecc------------e-eEEE
Q 018697          149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA------------H-VRNV  214 (351)
Q Consensus       149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~------------~-v~~~  214 (351)
                      |+.+++...........+|...+.+++|+|||+++++++ .++.+.+||..++.....+...            . ...+
T Consensus        89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2          89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             EccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE
Confidence            999765443332233335566788889999999986654 7899999999988765544311            1 5567


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCC----
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL----  290 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----  290 (351)
                      .+++++..++++....+.+.+++.............+...+..+.|+|++..++++...+..+.+++.........    
T Consensus       169 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence            7788887555556666777777776544333444467888999999999943444445567788888876521100    


Q ss_pred             --C--C---------------------------cccccCCcccccccceeeccccceEEEEEeCCCCCceEE-------E
Q 018697          291 --P--S---------------------------ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA-------S  332 (351)
Q Consensus       291 --~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-------s  332 (351)
                        .  .                           ......+....++....+.+|...+..++|+|+++ .|+       +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~-~l~v~~~~~~s  327 (426)
T d1hzua2         249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPD  327 (426)
T ss_dssp             SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS-EEEECCTTCSS
T ss_pred             CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc-eEEEeecCCCC
Confidence              0  0                           00000011123456677889999999999999999 566       4


Q ss_pred             eeeCCeEEEeecCcc
Q 018697          333 LSYDGRVVVESVKPF  347 (351)
Q Consensus       333 ~~~dg~v~vw~~~~~  347 (351)
                      ++.|++|+|||+.+.
T Consensus       328 ~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         328 ARISQSVAVFDLKNL  342 (426)
T ss_dssp             HHHHTCEEEEETTCT
T ss_pred             cccCCEEEEEECCCC
Confidence            567899999998753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.9e-22  Score=167.32  Aligned_cols=275  Identities=14%  Similarity=0.191  Sum_probs=188.6

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA  118 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  118 (351)
                      .+++.|++|++...+. +.......|.+.|..|+|+|||++|+++   +..|+.|++|++...     ......... ..
T Consensus        11 ~~~~~I~v~~~~~~~~-l~~~~~~~~~~~v~~la~spDG~~L~v~---~~~d~~i~~~~i~~~-----~~~~~~~~~-~~   80 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGA-LTLTQVVDVPGQVQPMVVSPDKRYLYVG---VRPEFRVLAYRIAPD-----DGALTFAAE-SA   80 (333)
T ss_dssp             GGGTEEEEEEECTTSC-EEEEEEEECSSCCCCEEECTTSSEEEEE---ETTTTEEEEEEECTT-----TCCEEEEEE-EE
T ss_pred             CCCCcEEEEEEcCCCC-eEEEEEEcCCCCEeEEEEeCCCCEEEEE---ECCCCeEEEEEEeCC-----CCcEEEeee-cc
Confidence            5679999999987544 4445556789999999999999999876   467899999998721     001122222 23


Q ss_pred             cccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCCeEEEEEc
Q 018697          119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL  197 (351)
Q Consensus       119 h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~  197 (351)
                      +...+..++|+|+|+++++++..++.|.+|+............   ..+...+.++.++|+++++++++ .+..+.+|+.
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc---cCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            4456788999999997444445678999999875332222211   12334678899999999988876 5678999998


Q ss_pred             ccCCcCceee-------cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCccee---Eee------CCCCceeEEEe
Q 018697          198 RSMGKTNSIE-------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ---ELP------GHTHWTWAVCC  260 (351)
Q Consensus       198 ~~~~~~~~~~-------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~------~~~~~v~~~~~  260 (351)
                      ..........       .+. +..++|++++...+.+....+...+++.......+.   ...      ........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            7654333222       111 789999999986666677778888888764332221   111      12345677889


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee---ccccceEEEEEeCCCCCceEEEeeeCC
Q 018697          261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY---SDYEDSVYGLAWSSREPWIFASLSYDG  337 (351)
Q Consensus       261 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg  337 (351)
                      ++++..+++++..++.+.+|++..                   .......   ..+...+++++|+|||+++++++..++
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~  298 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSE-------------------DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH  298 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECT-------------------TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             ecccCceeeecccCCeEEEEEEcC-------------------CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCC
Confidence            999955566667788999999976                   2222222   223345788999999996566666789


Q ss_pred             eEEEeecC
Q 018697          338 RVVVESVK  345 (351)
Q Consensus       338 ~v~vw~~~  345 (351)
                      .|++|+++
T Consensus       299 ~v~v~~id  306 (333)
T d1ri6a_         299 HISVYEIV  306 (333)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=4.6e-23  Score=173.14  Aligned_cols=228  Identities=11%  Similarity=0.111  Sum_probs=167.4

Q ss_pred             ceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc--ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCC
Q 018697           79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN  156 (351)
Q Consensus        79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~  156 (351)
                      +++++    +.|++|.|||+.         +.+.+..+..+  ...+.+++|+|||++++++++.++.|.+||+.+++..
T Consensus         3 ~~vt~----~~d~~v~v~D~~---------s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           3 YILAP----ARPDKLVVIDTE---------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEE----ETTTEEEEEETT---------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEE----cCCCEEEEEECC---------CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            45554    689999999998         67778777654  4567899999999975566677899999999987655


Q ss_pred             cccccccccCcccceeeeEECCCCCcEEEeec------------CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcE
Q 018697          157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL  223 (351)
Q Consensus       157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~  223 (351)
                      ..........+...+..++|+|++++++++..            +..+.+||..+++....+.... +..++|+|+++ +
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~  148 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-K  148 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-C
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCC-E
Confidence            44443332233446778999999999887753            5788899999988877777444 88999999999 5


Q ss_pred             EEEecCCCeEEEEecccCCccee---------------------------------------------------------
Q 018697          224 LVTAADESGIHLWDLRMLKAPIQ---------------------------------------------------------  246 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~---------------------------------------------------------  246 (351)
                      +++++.  .+.+||.... +...                                                         
T Consensus       149 l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         149 LYGLGR--DLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEESS--SEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEcC--CcceeeeecC-cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            666654  3566776531 1111                                                         


Q ss_pred             ---------EeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceE
Q 018697          247 ---------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV  317 (351)
Q Consensus       247 ---------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  317 (351)
                               .+..+...+..+.++|++ .+++.+  ++.|++||+.+                   ++.+..+. +...+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~-------------------~~~~~~~~-~~~~~  282 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK-------------------NASIKRVP-LPHSY  282 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT-------------------TEEEEEEE-CSSCC
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCC-------------------CcEEEEEc-CCCCE
Confidence                     112233445556677777 666554  57899999998                   77777764 45568


Q ss_pred             EEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          318 YGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       318 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      .+++|+|+|+ +|++++.|+.|++||.++.
T Consensus       283 ~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         283 YSVNVSTDGS-TVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             CEEEECTTSC-EEEEESBSSEEEEEETTTC
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence            9999999999 7888999999999999764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=4.2e-24  Score=181.34  Aligned_cols=190  Identities=11%  Similarity=0.006  Sum_probs=147.4

Q ss_pred             eeeeCC-CCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC-CcEEE
Q 018697           70 DLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-ENIFL  147 (351)
Q Consensus        70 ~i~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d-~~v~i  147 (351)
                      .-.||| ||++++++     ..+.|.+|++.         ....+ .+ .|...|.+++|+|+|+.+++++..+ ..|++
T Consensus         7 ~~~fSP~dG~~~a~~-----~~g~v~v~d~~---------~~~~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFSPLDGDLIAFV-----SRGQAFIQDVS---------GTYVL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEEEEECGGGCEEEE-----ETTEEEEECTT---------SSBEE-EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             cccccCCCCCEEEEE-----ECCeEEEEECC---------CCcEE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            457999 88888775     45799999987         33333 34 6999999999999999644444444 37899


Q ss_pred             EEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce--eEEEEcCCCCCcEEE
Q 018697          148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLV  225 (351)
Q Consensus       148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~  225 (351)
                      ||+.++... .+     ..|...+.+++|+|++++|++++.++.+++|++.+++....+....  +.+++|+|+|+ +|+
T Consensus        71 ~d~~~~~~~-~~-----~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la  143 (360)
T d1k32a3          71 YDYRTGKAE-KF-----EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIA  143 (360)
T ss_dssp             EETTTCCEE-EC-----CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEE
T ss_pred             EECCCCcEE-Ee-----eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcccee-eee
Confidence            999864322 21     2456689999999999999999999999999999888766665333  88999999999 555


Q ss_pred             Ee----------cCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCC
Q 018697          226 TA----------ADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS  285 (351)
Q Consensus       226 ~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  285 (351)
                      .+          ..++.+++||+.. ++ ...+..+...+..++|+|+| ++|++++.++.+++||....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         144 YGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSS
T ss_pred             eeccccccceeeccccceeeecccc-Cc-eeeecccccccccccccCCC-CEEEEEeCCCceEccccccc
Confidence            33          3455799999986 43 44555677888999999999 99999999999999987653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.9e-22  Score=173.47  Aligned_cols=293  Identities=8%  Similarity=-0.013  Sum_probs=188.8

Q ss_pred             eCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcce---eee
Q 018697           38 LKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE---RIA  114 (351)
Q Consensus        38 ~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~---~~~  114 (351)
                      ...++.+.+|+.....   ....+..| ..+..++|||||++++++    +.|+.+++||+...       ...   .+.
T Consensus        38 ~~d~g~v~v~D~~t~~---v~~~~~~g-~~~~~v~fSpDG~~l~~~----s~dg~v~~~d~~t~-------~~~~~~~i~  102 (432)
T d1qksa2          38 LRDAGQIALIDGSTYE---IKTVLDTG-YAVHISRLSASGRYLFVI----GRDGKVNMIDLWMK-------EPTTVAEIK  102 (432)
T ss_dssp             ETTTTEEEEEETTTCC---EEEEEECS-SCEEEEEECTTSCEEEEE----ETTSEEEEEETTSS-------SCCEEEEEE
T ss_pred             EcCCCEEEEEECCCCc---EEEEEeCC-CCeeEEEECCCCCEEEEE----cCCCCEEEEEeeCC-------CceEEEEEe
Confidence            4678999999976543   23444455 469999999999999876    57999999998721       222   233


Q ss_pred             eeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccccc------ccCcccceeeeEECCCCCcEEEe-e
Q 018697          115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAA-T  187 (351)
Q Consensus       115 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~-~  187 (351)
                      ....|.+.+.+..|+|||++++++++.++.|++||..+++.........      ...+......+.++|++..++++ .
T Consensus       103 ~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            3346777788888999999755666889999999998765433322111      11123356778899999887654 5


Q ss_pred             cCCeEEEEEcccCCcC--ceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------------
Q 018697          188 CESSVQFWDLRSMGKT--NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------------  249 (351)
Q Consensus       188 ~d~~i~iwd~~~~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------  249 (351)
                      .++.|.+||..+.+..  ..+..+. +..++|+|+|+++++++..+..+.++|.+. .+.+..+.               
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~~~~~~g~~~~~~~~~~~~~  261 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANFV  261 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc-ceEEEEeccCccccccCccccee
Confidence            6799999999877643  3444444 899999999996666666777899998865 32221111               


Q ss_pred             -----------------------------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          250 -----------------------------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       250 -----------------------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                                                   .|...+....++|++ ..+++++.+...++|+............+. ..++
T Consensus       262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv-~vpD  339 (432)
T d1qksa2         262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSV-AVFD  339 (432)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCE-EEEE
T ss_pred             cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeeeEE-EEEe
Confidence                                         112234555666766 667777777777777665432211000000 0010


Q ss_pred             c------cccccc--------eeeccccceEEEEEeCCCCCceEEEee----eCCeEEEeecCccc
Q 018697          301 Q------RANSLL--------NSYSDYEDSVYGLAWSSREPWIFASLS----YDGRVVVESVKPFL  348 (351)
Q Consensus       301 ~------~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~v~vw~~~~~~  348 (351)
                      .      .....+        ..+..|...|.+++|+|||++++++..    .+|.|.|||..+..
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             chhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            0      000111        112346667999999999995555543    47899999987654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=4.6e-21  Score=161.38  Aligned_cols=279  Identities=10%  Similarity=-0.009  Sum_probs=189.5

Q ss_pred             cCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018697           23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      +++++...+++++    .++.|.+|++...  ++.......|...+.+++|+||+++++++   +..++.|.+||+.   
T Consensus         3 a~~~~~~~l~~~~----~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~---~~~~~~v~~~d~~---   70 (346)
T d1jmxb_           3 ALKAGHEYMIVTN----YPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVL---NNHYGDIYGIDLD---   70 (346)
T ss_dssp             CCCTTCEEEEEEE----TTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEE---ETTTTEEEEEETT---
T ss_pred             cCCCCCcEEEEEc----CCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEE---ECCCCcEEEEeCc---
Confidence            4566777777764    5789999999764  34323334567788999999999998776   4788999999998   


Q ss_pred             CCCCCCcceeeeeeecc------ccceeEEEecCCCCCcEEEEe-----------cCCcEEEEEcCCCCCCccccccccc
Q 018697          103 GQLNSPQLERIAALDAH------VGKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSS  165 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~~~~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~  165 (351)
                            +.+.+..+...      ...+..++|+|+|+.++++..           .+..+.+|+..++.....+..... 
T Consensus        71 ------t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-  143 (346)
T d1jmxb_          71 ------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-  143 (346)
T ss_dssp             ------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-
T ss_pred             ------cCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-
Confidence                  55665555432      234668999999996444432           367788898876443332222111 


Q ss_pred             CcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcE---------------------
Q 018697          166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL---------------------  223 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~---------------------  223 (351)
                        ...+..+.+++++..++ .  ++.+.+||+.+++....+.... ...+.++|++..+                     
T Consensus       144 --~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         144 --PRQVYLMRAADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             --CSSCCCEEECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             --cCceEEEEecCCCEEEE-e--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence              12455566666665443 3  2568889998877666655332 4455555555422                     


Q ss_pred             ----EEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          224 ----LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       224 ----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                          ++++..+..+.+||+.........+..|...+..+.+++++ .+++... ++.|.+||..+               
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~---------------  281 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQ---------------  281 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTT---------------
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCC---------------
Confidence                22233344577788776443444556678888999999998 6666655 45799999998               


Q ss_pred             cccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                          ++.+..+. +...+.+++|+|||+ .+++++.|+.|++||+++..
T Consensus       282 ----~~~~~~~~-~~~~~~~va~s~DG~-~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         282 ----RKLIKAAN-LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             ----TEEEEEEE-CSSCCCEEEECSSSS-CEEEESBSSEEEEEETTTTE
T ss_pred             ----CcEEEEEc-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECccCC
Confidence                77777664 345689999999999 78888999999999998643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=4.8e-20  Score=160.12  Aligned_cols=247  Identities=10%  Similarity=0.013  Sum_probs=169.0

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      -+.+++|.|||..         +.+.+..+..+. .+..++|+|||++ +++++.|+.|.+||+.+++...........+
T Consensus        38 ~~d~g~v~v~D~~---------t~~v~~~~~~g~-~~~~v~fSpDG~~-l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          38 LRDAGQIALIDGS---------TYEIKTVLDTGY-AVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             ETTTTEEEEEETT---------TCCEEEEEECSS-CEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EcCCCEEEEEECC---------CCcEEEEEeCCC-CeeEEEECCCCCE-EEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            3789999999998         788899998774 6899999999996 5556789999999998765433322222334


Q ss_pred             cccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecc------------e-eEEEEcCCCCCcEEEEecCCCe
Q 018697          167 MLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHA------------H-VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~------------~-v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                      |...+.+..|+|||++|+ ++..++.|++||..+++.+..+...            . ...+.++|++..++++...++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            555777788999999875 5678999999999998876554411            1 6678999999977788888999


Q ss_pred             EEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEee-CCCeEEEEEcCCCCCCCC---------CCcccc-cCCc
Q 018697          233 IHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHDEL---------PSESLV-ESPN  300 (351)
Q Consensus       233 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~---------~~~~~~-~~~~  300 (351)
                      |.+||..... ...... .+...+..++|+|+| +++++++ .++.+.++|.........         ...... ..+.
T Consensus       187 i~~~d~~~~~-~~~~~~i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         187 ILLVDYTDLN-NLKTTEISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             EEEEETTCSS-EEEEEEEECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             EEEEEccCCC-cceEEEEcccCccccceECCCC-CEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            9999987633 232222 356678899999999 6655555 466888888876421100         000000 0000


Q ss_pred             -------ccccc-cceeec-------cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          301 -------QRANS-LLNSYS-------DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       301 -------~~~~~-~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                             ...+. .+....       .|...+....++|++. .+++++.+...++|.....
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-SLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCSEEEEECTT
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCC-eEEEEecCCccceeecccC
Confidence                   00001 111111       1334577788888887 6888888889999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.8e-19  Score=148.60  Aligned_cols=222  Identities=13%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             cCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccC
Q 018697           87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG  166 (351)
Q Consensus        87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~  166 (351)
                      ++.|++|.+||+.         +.+.+.++... ..+..++|+|+|++++++++.++.|++||+.++.....+...    
T Consensus         8 ~~~~~~v~v~D~~---------t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~----   73 (301)
T d1l0qa2           8 NSESDNISVIDVT---------SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----   73 (301)
T ss_dssp             ETTTTEEEEEETT---------TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS----
T ss_pred             ECCCCEEEEEECC---------CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc----
Confidence            4788999999998         67777777544 457899999999975556677899999999875543333221    


Q ss_pred             cccceeeeEECCCCCcEEEe-ecCCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          167 MLHYLSGGAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                        ..+..++|++++..++++ ..++.+.+|+..+++....+.... +.++.++|++..+++++..++.+.+|+..+ ...
T Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~  150 (301)
T d1l0qa2          74 --SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAV  150 (301)
T ss_dssp             --SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE
T ss_pred             --ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccc-cce
Confidence              156889999999877665 467899999999988777777444 889999999997777888899999999987 555


Q ss_pred             eeEeeCCCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeC
Q 018697          245 IQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS  323 (351)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  323 (351)
                      +..+.. ...+..+.++|++ ..+++++. ++.+.+|+...                   .........+ ..+..++|+
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~  208 (301)
T d1l0qa2         151 INTVSV-GRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVT-------------------NSVIDTVKVE-AAPSGIAVN  208 (301)
T ss_dssp             EEEEEC-CSSEEEEEECTTS-SEEEEEETTTTEEEEEETTT-------------------TEEEEEEECS-SEEEEEEEC
T ss_pred             eeeccc-CCCceEEEeeccc-cceeeecccccccccccccc-------------------eeeeeccccc-CCcceeecc
Confidence            666654 4567889999999 66665554 56777888776                   5555555444 457889999


Q ss_pred             CCCCceEEEee--eCCeEEEeecCcc
Q 018697          324 SREPWIFASLS--YDGRVVVESVKPF  347 (351)
Q Consensus       324 ~~~~~~l~s~~--~dg~v~vw~~~~~  347 (351)
                      +++..+++++.  .++.|++||+.+.
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ccccccccccccceeeeeeeeecCCC
Confidence            99985444432  3478999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9e-20  Score=152.73  Aligned_cols=217  Identities=10%  Similarity=0.082  Sum_probs=153.8

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeee--cCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLF--SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL  116 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  116 (351)
                      ..++.|.+|++...  .+ ...+.  .+...+.+++|+|||++++++   ++.++.|.+||+.         +++.+..+
T Consensus         8 ~~d~~v~v~D~~s~--~~-~~~i~~~~~~~~~~~i~~spDg~~l~v~---~~~~~~v~v~D~~---------t~~~~~~~   72 (337)
T d1pbyb_           8 ARPDKLVVIDTEKM--AV-DKVITIADAGPTPMVPMVAPGGRIAYAT---VNKSESLVKIDLV---------TGETLGRI   72 (337)
T ss_dssp             ETTTEEEEEETTTT--EE-EEEEECTTCTTCCCCEEECTTSSEEEEE---ETTTTEEEEEETT---------TCCEEEEE
T ss_pred             cCCCEEEEEECCCC--eE-EEEEECCCCCCCccEEEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEEE
Confidence            36799999998764  22 23333  344678899999999988766   4788999999998         66777766


Q ss_pred             eccc-----cceeEEEecCCCCCcEEEEe-----------cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCC
Q 018697          117 DAHV-----GKINCVLWWSSGRHDKLVSI-----------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD  180 (351)
Q Consensus       117 ~~h~-----~~v~~~~~~~~~~~~~~~~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  180 (351)
                      ..+.     ..+..++|+|+++.++++..           .+..+.+||..+.........      ...+..++|+|++
T Consensus        73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg  146 (337)
T d1pbyb_          73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDG  146 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTS
T ss_pred             ecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc------cCCceEEEEcCCC
Confidence            5543     34567999999996444332           356788899886543322221      2267889999999


Q ss_pred             CcEEEeecCCeEEEEEcccCCcCceee-----------------------------------------------------
Q 018697          181 VNAVAATCESSVQFWDLRSMGKTNSIE-----------------------------------------------------  207 (351)
Q Consensus       181 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------------------------------------  207 (351)
                      +++++++.+  +.+||..+++....+.                                                     
T Consensus       147 ~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         147 SKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             SCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             CEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            999887644  5667765432111100                                                     


Q ss_pred             ------------cce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEee
Q 018697          208 ------------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       208 ------------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                                  ..+   +..++++|++. +++.+  ++.|++||+++ .+.+..+. +...+.+++|+|+| .+|++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG-~~l~v~~  298 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDG-STVWLGG  298 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTS-CEEEEES
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCC-CEEEEEe
Confidence                        001   45667777776 45443  57999999997 66677665 56778999999999 8999999


Q ss_pred             CCCeEEEEEcCC
Q 018697          273 TDSTVNLWLVST  284 (351)
Q Consensus       273 ~dg~i~iwd~~~  284 (351)
                      .|+.|++||..+
T Consensus       299 ~~~~i~v~D~~t  310 (337)
T d1pbyb_         299 ALGDLAAYDAET  310 (337)
T ss_dssp             BSSEEEEEETTT
T ss_pred             CCCcEEEEECCC
Confidence            999999999998

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=4.9e-17  Score=138.22  Aligned_cols=286  Identities=8%  Similarity=-0.092  Sum_probs=187.0

Q ss_pred             eEeeeecCCCCcceEEEeeeee-CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCC
Q 018697           17 RCISDVKADTDHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGE   89 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~   89 (351)
                      ..+.....+|+..++++..... ...+.+.+++..  .+++. ..+..+..  ..++|+|||++|+++...      +..
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~--tg~~~-~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG--SGSIL-GHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEECC--CCCEE-EEEeCCCC--ccEEEcCCCCEEEEEeecCCccccccc
Confidence            3455666889999988764322 233566666644  34443 34444443  379999999999887422      234


Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccce-------eEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCccccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-------NCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQS  161 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~  161 (351)
                      ++.|.+||..         +.+.+..+..+....       ..+.|+++++.+++.. ..++.+.+|+.......    .
T Consensus        96 ~~~v~v~D~~---------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~  162 (373)
T d2madh_          96 TDYVEVFDPV---------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----Q  162 (373)
T ss_pred             ceEEEEEECC---------CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----E
Confidence            6789999998         566666666555443       4577888888755555 44677888887753211    1


Q ss_pred             ccccCcccceeeeEECCCCCcEE-EeecCCeEEEEEcccCCcCceeecc-----e---eEEEEcCCCCCcEEEEecCCCe
Q 018697          162 KQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHA-----H---VRNVDYDTKKKHLLVTAADESG  232 (351)
Q Consensus       162 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~-----~---v~~~~~~~~~~~~l~~~~~dg~  232 (351)
                           +.....++.++|+++.++ +.+.|+.+.+||...++........     .   ...+.+.+++.  ++..+.++.
T Consensus       163 -----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  235 (373)
T d2madh_         163 -----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR--IVWPVYSGK  235 (373)
T ss_pred             -----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce--EEEecCCce
Confidence                 122466788999988765 5678999999999887665544311     1   44566666664  556678889


Q ss_pred             EEEEecccCCc-ceeEeeCCC----------CceeEEEecCCCC---------CeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          233 IHLWDLRMLKA-PIQELPGHT----------HWTWAVCCNPEYD---------GFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       233 i~i~d~~~~~~-~~~~~~~~~----------~~v~~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      +.+|+...... .......+.          .....++++|++.         ..+++...++.+.+||..+        
T Consensus       236 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t--------  307 (373)
T d2madh_         236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------  307 (373)
T ss_pred             EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC--------
Confidence            99999875321 111111111          2233455566552         2334556677899999988        


Q ss_pred             cccccCCcccccccceeeccccceEEEEEeCCCCCce-EEEeeeCCeEEEeecCcc
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI-FASLSYDGRVVVESVKPF  347 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~dg~v~vw~~~~~  347 (351)
                                 ++.+..+. +...+.+++|+|||+.+ +++++.|+.|++||+.+.
T Consensus       308 -----------~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         308 -----------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             -----------CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence                       77777664 45568999999999854 568889999999999764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.6e-16  Score=131.25  Aligned_cols=252  Identities=10%  Similarity=0.138  Sum_probs=173.5

Q ss_pred             eeeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEc
Q 018697           19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI   98 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~   98 (351)
                      +..+.++|++..|+++.   ..++.|.+|++......+.......+...+..++|+|++++|+++   +..++.+.+|+.
T Consensus        39 v~~la~spDG~~L~v~~---~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~---~~~~~~v~~~~~  112 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGV---RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG---SYNAGNVSVTRL  112 (333)
T ss_dssp             CCCEEECTTSSEEEEEE---TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE---ETTTTEEEEEEE
T ss_pred             EeEEEEeCCCCEEEEEE---CCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeec---ccCCCceeeecc
Confidence            44677899998887754   457899999999876665555555666778899999999999887   356789999998


Q ss_pred             ccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccc-cccCcccceeeeEEC
Q 018697           99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWD  177 (351)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~  177 (351)
                      ..       ...........+...+.++.++|+++.++.....+..|.+|+............. ...........++|+
T Consensus       113 ~~-------~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~  185 (333)
T d1ri6a_         113 ED-------GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH  185 (333)
T ss_dssp             ET-------TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred             cc-------ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEe
Confidence            72       1223334445677788899999999964444456778999998764433222111 111222356789999


Q ss_pred             CCCCcEEEee-cCCeEEEEEcccCCcCce----ee-------cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc
Q 018697          178 PHDVNAVAAT-CESSVQFWDLRSMGKTNS----IE-------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP  244 (351)
Q Consensus       178 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~----~~-------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  244 (351)
                      +++..++... ..+...+|+.........    ..       ... ...++++++++++++.+..++.+.+|++......
T Consensus       186 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~  265 (333)
T d1ri6a_         186 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV  265 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred             ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE
Confidence            9998877665 567788888654332211    10       011 6778999999977788888899999998764332


Q ss_pred             eeE--eeCCCCceeEEEecCCCCCeEEEe-eCCCeEEEEEcCC
Q 018697          245 IQE--LPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVST  284 (351)
Q Consensus       245 ~~~--~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~  284 (351)
                      ...  ...+...+..++|+|+| ++|+++ ..++.|++|++..
T Consensus       266 ~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         266 LSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEET
T ss_pred             EEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEEC
Confidence            222  22344567889999999 766555 5578999996653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.5e-17  Score=138.94  Aligned_cols=286  Identities=10%  Similarity=-0.052  Sum_probs=178.6

Q ss_pred             cCCCCcceEEEeeeee-CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEE
Q 018697           23 KADTDHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAI   95 (351)
Q Consensus        23 ~~~~~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~v   95 (351)
                      ..+|+..++++..... ...+.+++|+...  +.+. ..+..+  .+..++|+||++.|+++...      +..++.|++
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t--g~~~-~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA--GRVI-GMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT--TEEE-EEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCC--CcEE-EEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            4578999988765333 2356787777654  3333 334333  34479999999998876321      235789999


Q ss_pred             EEcccccCCCCCCcceeeeeeeccc-------cceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCccccccccc--
Q 018697           96 WQIPELYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSS--  165 (351)
Q Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~--  165 (351)
                      ||+.         +.+.+..+..+.       .....++|+|+++.++++. +.+..+.+|+..++.....+......  
T Consensus        83 ~D~~---------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          83 FDPV---------TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             ECTT---------TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EECC---------CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            9998         556555554332       2235689999999755555 55788999999875433322211100  


Q ss_pred             CcccceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecceeEEEEcCCCCCcEEEEecCCCeEEEEecccCCc-
Q 018697          166 GMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-  243 (351)
Q Consensus       166 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  243 (351)
                      ........+.+++++..++... .++.+.+++...........   +....+.+++. .++.++.++.+++|++..... 
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL---INHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB---CSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCE
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce---eeeccccCCCC-eEEEecCCCeEEEEecCCCcEE
Confidence            0011233456677766665543 44556666554433322211   44556666776 677788999999999886321 


Q ss_pred             ceeEeeCCC----------CceeEEEecCCCCCeEEEeeCC----------CeEEEEEcCCCCCCCCCCcccccCCcccc
Q 018697          244 PIQELPGHT----------HWTWAVCCNPEYDGFILSAGTD----------STVNLWLVSTSNHDELPSESLVESPNQRA  303 (351)
Q Consensus       244 ~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  303 (351)
                      .+.....+.          .....+++++++ ..++....+          ..|.+||..+                   
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-------------------  289 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKT-------------------  289 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTT-------------------
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCC-------------------
Confidence            111222222          123457888888 555544332          3699999998                   


Q ss_pred             cccceeeccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCcc
Q 018697          304 NSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       304 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~  347 (351)
                      ++.+..+.. ...+.+++|+|||+. ++++++.|+.|++||+++.
T Consensus       290 ~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         290 GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            777777754 345889999999974 4567778999999998753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=1e-17  Score=140.58  Aligned_cols=256  Identities=10%  Similarity=0.053  Sum_probs=162.9

Q ss_pred             eeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018697           71 LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (351)
Q Consensus        71 i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd  149 (351)
                      ++|++++++++++    +.++.|.+||+.         +.+.+.++. .|...+.+++|+|||+++++++..++.|++||
T Consensus         2 ~a~~~~~~~l~~~----~~~~~v~v~D~~---------t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           2 PALKAGHEYMIVT----NYPNNLHVVDVA---------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             CCCCTTCEEEEEE----ETTTEEEEEETT---------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEE----cCCCEEEEEECC---------CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence            5789999999886    689999999998         678888876 45667889999999997556667789999999


Q ss_pred             cCCCCCCccccccc-ccCcccceeeeEECCCCCcEEEee------------cCCeEEEEEcccCCcCceeec---ce-eE
Q 018697          150 LDCSNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAAT------------CESSVQFWDLRSMGKTNSIEH---AH-VR  212 (351)
Q Consensus       150 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~---~~-v~  212 (351)
                      +.++.......... ...+...+..++|+||++++++++            .+..+.+||..+++....+..   +. +.
T Consensus        69 ~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  148 (346)
T d1jmxb_          69 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY  148 (346)
T ss_dssp             TTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC
T ss_pred             CccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceE
Confidence            99765443332211 112223567899999999988765            367889999988776554432   22 66


Q ss_pred             EEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      .+.+++++. +++++   +.+.+|++.+ .+.+..+..+ .....+.++|++...++....++.+.+++...........
T Consensus       149 ~~~~~~~~~-~~~~~---~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         149 LMRAADDGS-LYVAG---PDIYKMDVKT-GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             CEEECTTSC-EEEES---SSEEEECTTT-CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             EEEecCCCE-EEEeC---CcceEEEccC-CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence            677788876 55543   4689999986 5566666543 3445666777763333333334444444332110000000


Q ss_pred             ---ccc---ccCCccccccc-ceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          293 ---ESL---VESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       293 ---~~~---~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                         ...   ...+....+.. ......|...+..+.+++++. .++... ++.|.+||+.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~  282 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQR  282 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTT
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCC
Confidence               000   00000000222 233456777788999999988 566555 467999998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=5.7e-15  Score=125.22  Aligned_cols=265  Identities=8%  Similarity=-0.016  Sum_probs=172.1

Q ss_pred             eecCCCCcceEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeeecCCcce-------eeeeeCCCCCceEEEEeec
Q 018697           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSHPNEI-------WDLSSCPFDQRIFSTVFST   87 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~l~~~~~~~   87 (351)
                      .+.++|++.+++++....      ..++.+.+|+......   ...+..+....       ..+.|+++++.++...  .
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~  144 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ--F  144 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE---EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE--E
Confidence            467889999998875322      3457788888765431   22233333322       4578888888776653  2


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc-cC
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS-SG  166 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~  166 (351)
                      ..++.+.+|+..         ..+..    .+.....++.++|+++.++++.+.|+.+.+|+............... .+
T Consensus       145 ~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         145 AAGPAVGLVVQG---------GSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             cCCCceEEeecc---------CCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence            445678888876         33332    33345678899999997666778899999999986543332222111 11


Q ss_pred             cccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-------------ce-eEEEEcCCCCCcE---------
Q 018697          167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKHL---------  223 (351)
Q Consensus       167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~~---------  223 (351)
                      .......+.+.+++. ++..+.++.+.+|+............             .. ...+++++++..+         
T Consensus       212 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         212 QNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             ccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence            112334455665544 55566788899998876542211110             00 3445666666522         


Q ss_pred             EEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccc
Q 018697          224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR  302 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  302 (351)
                      +++...++.+.+||..+ ++.+..+. +...+..++|+|||.. ++++++.|+.|++||+.+                  
T Consensus       291 ~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t------------------  350 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA------------------  350 (373)
T ss_pred             EEeecCCCeEEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC------------------
Confidence            33455667899999987 55666665 6678899999999933 457889999999999999                  


Q ss_pred             ccccceeeccccceEEEEEeCCC
Q 018697          303 ANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       303 ~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                       ++.+.++..+....+.+++.++
T Consensus       351 -g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 -GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             -CCEEEEECCCCCCCcEEEEecC
Confidence             8999999877777777776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.70  E-value=1.5e-14  Score=122.20  Aligned_cols=289  Identities=8%  Similarity=0.028  Sum_probs=174.0

Q ss_pred             ceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEe--eecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCC
Q 018697           29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (351)
Q Consensus        29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (351)
                      +.|++|+++  ..+.|+.++|+.++..+....  .......+.-|+|+|+++.|.++     ..+.+..|.+..      
T Consensus         3 ~~l~vGtyt--~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-----~~~~~~~~~i~~------   69 (365)
T d1jofa_           3 HHLMIGTWT--PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-----AMKKWSSFAVKS------   69 (365)
T ss_dssp             EEEEEEESS--SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-----EBTEEEEEEEEE------
T ss_pred             eEEEEEeec--CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-----eCCcEEEEEEeC------
Confidence            468899876  346799999999988765432  23345567779999999999886     345677887762      


Q ss_pred             CCcceeeeee-eccccceeEEEecCCCCCcEEEE--ecCCcEEEEEcCCCCCCcccc------------cccccCcccce
Q 018697          107 SPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVS--IDEENIFLWSLDCSNKNAQVQ------------SKQSSGMLHYL  171 (351)
Q Consensus       107 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~~~~~~~------------~~~~~~~~~~v  171 (351)
                        ........ .........+.++++++.++++.  ...++|..+.+..........            ..........+
T Consensus        70 --~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~  147 (365)
T d1jofa_          70 --PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI  147 (365)
T ss_dssp             --TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred             --CCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcc
Confidence              12222111 12233456778889888544544  235666666544322111111            00000111236


Q ss_pred             eeeEECCCCCcEEEee-cCCeEEEEEcccCCcCcee---e---cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc
Q 018697          172 SGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSI---E---HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA  243 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~---~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  243 (351)
                      .++.|+|++++++++. ....|.+|+......+...   .   .+. ...++|+|+++.++++...+++|.+|++.....
T Consensus       148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            7899999999988876 3568888876543222111   1   122 899999999996667777889999999875321


Q ss_pred             c-eeE---ee--------------CCCCceeEEEecCCCCCeEEEeeC-C-----CeEEEEEcCCCCCCCCCCcccccCC
Q 018697          244 P-IQE---LP--------------GHTHWTWAVCCNPEYDGFILSAGT-D-----STVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       244 ~-~~~---~~--------------~~~~~v~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      . +..   ..              .+......+.++|+| ++|+++.. +     ..|..|++.......          
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~----------  296 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIE----------  296 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEE----------
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCcee----------
Confidence            1 111   10              111235678999999 77766532 2     237777776410000          


Q ss_pred             cccccccceeeccccceEEEEEeCC-CCCceEEEeeeCCeEEEeecCc
Q 018697          300 NQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       300 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                         ....+..........++++++| +|++++++...++.|.+|+++.
T Consensus       297 ---~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         297 ---KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ---EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ---eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence               0001111111223457799998 7886667777899999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3.5e-15  Score=125.55  Aligned_cols=260  Identities=10%  Similarity=0.016  Sum_probs=166.3

Q ss_pred             eecCCCCcceEEEeeeee------CCCCEEEEEEeCCCCCeEEEEeeecC-------CcceeeeeeCCCCCceEEEEeec
Q 018697           21 DVKADTDHTSFLTGTLSL------KEENEVHLLRLSSGGTELICEGLFSH-------PNEIWDLSSCPFDQRIFSTVFST   87 (351)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~~~   87 (351)
                      .+.++|++..+++.....      ..++.|.+|+.....  .. ..+..+       ......++|+|+++.++.+.  .
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~  125 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ--F  125 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE--C
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EE-EEEecCCcceeecCCCCceEEEecCCCeeEEec--C
Confidence            456888988887754321      234667777665532  22 222222       23345689999999888763  4


Q ss_pred             CCcceEEEEEcccccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccc
Q 018697           88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ  160 (351)
Q Consensus        88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~  160 (351)
                      +.+..+.+|+..         ..+.+..+..+..       ....+.+++++..+++....++.+.+++......     
T Consensus       126 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----  191 (355)
T d2bbkh_         126 SPAPAVGVVDLE---------GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----  191 (355)
T ss_dssp             SSSCEEEEEETT---------TTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----
T ss_pred             CCCceeeeeecC---------CCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----
Confidence            566789999987         5566666544332       2334566666664333334455555555543211     


Q ss_pred             cccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc--eeecc-----------e-eEEEEcCCCCCcEEEE
Q 018697          161 SKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIEHA-----------H-VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       161 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~-----------~-v~~~~~~~~~~~~l~~  226 (351)
                           .+...+....+.+++..++.++.++.+++|++..+....  .....           . ...+++++++..+++.
T Consensus       192 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~  266 (355)
T d2bbkh_         192 -----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  266 (355)
T ss_dssp             -----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             -----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEE
Confidence                 112245566778888889999999999999998765321  11100           0 3458889999844433


Q ss_pred             ecC---------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCCCCCcccc
Q 018697          227 AAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLV  296 (351)
Q Consensus       227 ~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  296 (351)
                      ...         ...|.+||..+ .+.+..+. +...+.+++|+|+|+. ++++++.|+.|++||.++            
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t------------  332 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKT-GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES------------  332 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTT-CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT------------
T ss_pred             eccCCceeecCCCCeEEEEeCCC-CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC------------
Confidence            222         24799999997 55666665 3466889999999943 456778899999999999            


Q ss_pred             cCCcccccccceeeccccceEEEEEeCCC
Q 018697          297 ESPNQRANSLLNSYSDYEDSVYGLAWSSR  325 (351)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  325 (351)
                             ++.+.++..+......+.+.++
T Consensus       333 -------g~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         333 -------GEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             -------CCEEEEECCCCSSCCEEECCCC
T ss_pred             -------CCEEEEEeCcCCCccEEEeCCC
Confidence                   8888888766555555655543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.68  E-value=7.5e-16  Score=130.65  Aligned_cols=245  Identities=10%  Similarity=-0.010  Sum_probs=159.7

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecC
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDE  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d  142 (351)
                      |........+.|||++|++.   ...+..|.++|+.         +++....+. .+...+..++|+|+++..++++..+
T Consensus        70 hhP~~s~t~gtpDGr~lfV~---d~~~~rVavIDl~---------t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~  137 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFIN---DKANTRVARIRLD---------IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE  137 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC
T ss_pred             cCCCcceecccCCCCEEEEE---cCCCCEEEEEECC---------CCcEeeEEecCCCCCccceEEeccCCEEEEEeccC
Confidence            34445566678999999887   4677899999998         666666554 3567899999999999766666444


Q ss_pred             CcE------------------EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---------------
Q 018697          143 ENI------------------FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---------------  189 (351)
Q Consensus       143 ~~v------------------~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  189 (351)
                      ..+                  ..+|..+.....++...      ..+..+.++|+++++++++.+               
T Consensus       138 ~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         138 FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             CcccccCcccccccccccceEEeecCccceeeEEEecC------CCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence            443                  33555543322222221      156788999999988877643               


Q ss_pred             --------------------------CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCC
Q 018697          190 --------------------------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK  242 (351)
Q Consensus       190 --------------------------~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  242 (351)
                                                +.+.+++....+.+..+..+. ...+.++|||+++++++..+++|.+||+++..
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence                                      223344444444445555444 78899999999888889999999999987532


Q ss_pred             cc-------eeEeeCC---CCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee---
Q 018697          243 AP-------IQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS---  309 (351)
Q Consensus       243 ~~-------~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  309 (351)
                      +.       ...+.++   .-.....+|+++| ..+.+...|..|..|++......        ...++ ....+..   
T Consensus       292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~--------~~~~~-~~~v~~~~~v  361 (441)
T d1qnia2         292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKH--------YNGDR-VNYIRQKLDV  361 (441)
T ss_dssp             HHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHH--------HTTCC-CCCEEEEEEC
T ss_pred             hHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhh--------hccCC-CceeEecccc
Confidence            11       1111111   1223556899999 88889999999999998531000        00000 0112222   


Q ss_pred             --eccccceEEEEEeCCCCCceEEEe---eeCC
Q 018697          310 --YSDYEDSVYGLAWSSREPWIFASL---SYDG  337 (351)
Q Consensus       310 --~~~~~~~v~~~~~~~~~~~~l~s~---~~dg  337 (351)
                        ..+|...+.+.+++|||+ +|+++   +.|+
T Consensus       362 ~y~~GH~~~~~~~t~~pdGk-~l~s~~k~s~dr  393 (441)
T d1qnia2         362 QYQPGHNHASLTESRDADGK-WLVVLSKFSKDR  393 (441)
T ss_dssp             SSCEEEEEETTTTSTTCCCC-EEEEEESCCGGG
T ss_pred             ccCCCCCccccccccCCCCc-EEEecCcccccc
Confidence              257888888899999999 78888   4554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=8.1e-15  Score=124.23  Aligned_cols=277  Identities=9%  Similarity=-0.057  Sum_probs=162.9

Q ss_pred             CCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee------cCCcceEEEEE
Q 018697           24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS------TGESYGAAIWQ   97 (351)
Q Consensus        24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~------~~~d~~i~vw~   97 (351)
                      ..++..+..+.- .....+...+|-++.....+.. .+..+...  .++|+|+++.|+++...      |..|+.|++||
T Consensus        27 ~~~~~~~~~v~~-~~~~~g~~~~~~~d~~~~~~~~-~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          27 PGAISRRSHITL-PAYFAGTTENWVSCAGCGVTLG-HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCTTEEEEEE-CTTTCSSEEEEEEETTTTEEEE-EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             cCCCCcceeEEe-eccCCCcceEEEEeCCCCcEEE-EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEE
Confidence            345555544321 1223344455555555565543 34444433  58999999998876422      34578899999


Q ss_pred             cccccCCCCCCcceeeeeeecccc-------ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccc
Q 018697           98 IPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY  170 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  170 (351)
                      ..         +.+++..+..+..       ....++|+|||++++++...++.+.+||+.+.+.........       
T Consensus       103 ~~---------t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~-------  166 (368)
T d1mdah_         103 PV---------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS-------  166 (368)
T ss_dssp             TT---------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS-------
T ss_pred             CC---------CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC-------
Confidence            88         5666666654322       234689999999855555678999999999754333221111       


Q ss_pred             eeeeEECCC-CCcEEEeecCCeEEEEEcccCCcCceeec-----ce---eEEEEcCCCCCcEEEEecCCCeEEEEecccC
Q 018697          171 LSGGAWDPH-DVNAVAATCESSVQFWDLRSMGKTNSIEH-----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML  241 (351)
Q Consensus       171 v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  241 (351)
                        +..+.|. ...+++.+.||.+.++++...........     .+   +..+.+.+++. .+.+  .++.+++++... 
T Consensus       167 --~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~-  240 (368)
T d1mdah_         167 --CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPA-  240 (368)
T ss_dssp             --CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCS-
T ss_pred             --cceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE-EEEe--cCCCEEEEeecC-
Confidence              0011112 23344556677777777665443322210     11   55677777775 4433  345566666654 


Q ss_pred             CcceeE--eeCCC----------CceeEEEecCCCCCeEEEee-CC--------CeEEEEEcCCCCCCCCCCcccccCCc
Q 018697          242 KAPIQE--LPGHT----------HWTWAVCCNPEYDGFILSAG-TD--------STVNLWLVSTSNHDELPSESLVESPN  300 (351)
Q Consensus       242 ~~~~~~--~~~~~----------~~v~~~~~~~~~~~~l~s~~-~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~  300 (351)
                      ......  ...+.          .....++++|++ ..++... .+        ..|.+||..+                
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t----------------  303 (368)
T d1mdah_         241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASV----------------  303 (368)
T ss_dssp             SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSS----------------
T ss_pred             CceEEEeecccccceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCC----------------
Confidence            211111  11111          122457788888 4444332 22        3588999998                


Q ss_pred             ccccccceeeccccceEEEEEeCCCCCc-eEEEeeeCCeEEEeecCcc
Q 018697          301 QRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~~  347 (351)
                         ++.+..+.. ...+.+++|+|||+. +++++..|+.|++||..+.
T Consensus       304 ---~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         304 ---GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ---CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             ---CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence               777777653 456889999999974 4577778999999998753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=2.4e-13  Score=118.94  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=92.8

Q ss_pred             CCCEEEEEEeCCCCCeEEEE--eeecCCcceeeeeeCCCCCceEEEEee-----cCCcceEEEEEcccccCCCCCCccee
Q 018697           40 EENEVHLLRLSSGGTELICE--GLFSHPNEIWDLSSCPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLER  112 (351)
Q Consensus        40 ~~~~i~~~~~~~~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~  112 (351)
                      .++.+.++++..........  .+..|...|.++.||||+++|+.+...     -+.++.+.|||+.         ..+ 
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~---------~~~-  103 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN---------KRQ-  103 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT---------TTE-
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC---------CCc-
Confidence            46778888877655433221  344566889999999999999876311     1335678999998         333 


Q ss_pred             eeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccc----c---------CcccceeeeEECCC
Q 018697          113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS----S---------GMLHYLSGGAWDPH  179 (351)
Q Consensus       113 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~---------~~~~~v~~~~~~~~  179 (351)
                      +..+..|...+..+.|||||+.  ++...++.+++|+..++...........    .         ........+.|+||
T Consensus       104 ~~~l~~~~~~~~~~~~SPDG~~--ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD  181 (470)
T d2bgra1         104 LITEERIPNNTQWVTWSPVGHK--LAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN  181 (470)
T ss_dssp             ECCSSCCCTTEEEEEECSSTTC--EEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred             ccccccCCccccccccccCcce--eeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC
Confidence            4567788899999999999995  4445678999999887654332221110    0         01223566789999


Q ss_pred             CCcEEEeec
Q 018697          180 DVNAVAATC  188 (351)
Q Consensus       180 ~~~l~~~~~  188 (351)
                      |+.|+....
T Consensus       182 Gk~ia~~~~  190 (470)
T d2bgra1         182 GTFLAYAQF  190 (470)
T ss_dssp             SSEEEEEEE
T ss_pred             CCccceeEe
Confidence            999988753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.6e-11  Score=94.62  Aligned_cols=241  Identities=11%  Similarity=0.091  Sum_probs=141.2

Q ss_pred             EEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccc
Q 018697           43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK  122 (351)
Q Consensus        43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  122 (351)
                      +|++.+.+..+..    .+..+...+.+.+|||||+.|+.+.   ...+...+|....        .......+..+.+.
T Consensus        20 ~l~i~d~dG~~~~----~l~~~~~~~~sP~wSPDGk~IAf~~---~~~~~~~~~~~~~--------~~~~~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYNQF----VVHRSPQPLMSPAWSPDGSKLAYVT---FESGRSALVIQTL--------ANGAVRQVASFPRH   84 (269)
T ss_dssp             EEEEEETTSCSCE----EEEEESSCEEEEEECTTSSEEEEEE---CTTSSCEEEEEET--------TTCCEEEEECCSSC
T ss_pred             EEEEEcCCCCCcE----EEecCCCceeeeEECCCCCEEEEEE---eeccCcceeeeec--------ccCceeEEeeeecc
Confidence            4666665543332    2334677888999999999998774   3344333444331        12334455667788


Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCC--eEEEEEccc
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRS  199 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~  199 (351)
                      .....|+|++..+++....++...++..............    .........+++++..++..+ .++  .|.+.++..
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccceeeee----ccccccccccccccccceecccccCCceEeeeeccc
Confidence            8899999999975554444444444433322211111111    111334456777777665554 344  455556555


Q ss_pred             CCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEE-EeeC--CC
Q 018697          200 MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL-SAGT--DS  275 (351)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~--dg  275 (351)
                      +.......... .....|+|++..++......+...+|......... .+..+........|+||| +.|+ +...  ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~  238 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNG-TMVIYSSSQGMGS  238 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTS-SEEEEEEEETTEE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCC-CEEEEEEcCCCCc
Confidence            43322222122 77889999999666666666666666655433333 344456677888999999 5554 4433  33


Q ss_pred             eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCC
Q 018697          276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS  324 (351)
Q Consensus       276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  324 (351)
                      .|.++++..                   . ....+......+...+|+|
T Consensus       239 ~l~~~~~dg-------------------~-~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         239 VLNLVSTDG-------------------R-FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEETTS-------------------C-CEEECCCSSSEEEEEEECC
T ss_pred             EEEEEECCC-------------------C-CEEEEeCCCCcEEeEEeCC
Confidence            678888875                   3 3344545566788899998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=1.3e-12  Score=110.53  Aligned_cols=206  Identities=12%  Similarity=0.023  Sum_probs=127.7

Q ss_pred             ceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee-cCC----------
Q 018697          122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES----------  190 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~----------  190 (351)
                      .......+|||++++++...++.|.++|+.+.+....+..    .+...+..++|+|+++.+++.+ .+.          
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i----P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI----PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC----TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec----CCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            3455566899998556656789999999997543332211    1223688999999998654432 222          


Q ss_pred             --------eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCC-------------------------------
Q 018697          191 --------SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE-------------------------------  230 (351)
Q Consensus       191 --------~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-------------------------------  230 (351)
                              .+..+|..+.+...++..+. +..++++|+|++.++++...                               
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence                    23457877777666666444 88999999999544443221                               


Q ss_pred             ---------CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          231 ---------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       231 ---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                               +.+.+++... ...+..+..... ...+.++|||..+++++..+++|.+||+......-       ...  
T Consensus       229 Gk~~~v~~~~v~vvd~~~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~-------~~~--  297 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF-------EDK--  297 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT-------TTS--
T ss_pred             CCEEEeCCCCcEEEEcccC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh-------hcc--
Confidence                     2233333332 334555554433 57899999994445677889999999997621000       000  


Q ss_pred             cccccceeeccc---cceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          302 RANSLLNSYSDY---EDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       302 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                        ......+.++   .-.....+|.++|. .+.+...|..|..|++.
T Consensus       298 --~~~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         298 --IELRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             --SCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHH
T ss_pred             --CCcceEEEeecccccCcccceecCCce-EEEcccccceEEEeccc
Confidence              0001111111   11245568999987 78888899999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=3.5e-12  Score=107.65  Aligned_cols=258  Identities=9%  Similarity=0.000  Sum_probs=154.9

Q ss_pred             ecCCCCcceEEEeeeeeC------CCCEEEEEEeCCCCCeEEEEeeecCC-------cceeeeeeCCCCCceEEEEeecC
Q 018697           22 VKADTDHTSFLTGTLSLK------EENEVHLLRLSSGGTELICEGLFSHP-------NEIWDLSSCPFDQRIFSTVFSTG   88 (351)
Q Consensus        22 ~~~~~~~~~~~~g~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~~~~~~~~   88 (351)
                      +.+++++..+++.+....      .++.|.+|+.....  .. ..+..+.       .....++|+|||++|+++   ..
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va---~~  143 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFF---LF  143 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE---EC
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--Ee-eeecCCccceecccCCccceEECCCCCEEEEE---eC
Confidence            556788888887754322      23556666655432  21 2222221       234578999999999876   35


Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCccccc-ccccCc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQSSGM  167 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~  167 (351)
                      .++.+.+||+.         ..+....+..+....    +.|.+...+++.+.||.+.++++........... .....+
T Consensus       144 ~~~~v~~~d~~---------~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         144 GSSAAAGLSVP---------GASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             SSSCEEEEEET---------TTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCCeEEEEECC---------CCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            67899999998         566666665554332    2344444355557788888888765443322111 111222


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee----------c---ce-eEEEEcCCCCCcEEEEecCC---
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------H---AH-VRNVDYDTKKKHLLVTAADE---  230 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~---~~-v~~~~~~~~~~~~l~~~~~d---  230 (351)
                      ...+....+.+++..+..  ..+.+++++...........          .   .. ...++++|++..+++....+   
T Consensus       211 ~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~  288 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS  288 (368)
T ss_dssp             CBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred             ccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCce
Confidence            334556667776654433  34556666655443221110          0   01 34578888888444433222   


Q ss_pred             -----CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC-eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccc
Q 018697          231 -----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN  304 (351)
Q Consensus       231 -----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
                           ..|.+||..+ .+.+..+. +...+..++|+|||+. +++++..|+.|++||..+                   +
T Consensus       289 ~~~~~~~v~v~D~~t-~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-------------------g  347 (368)
T d1mdah_         289 CLAAAENTSSVTASV-GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-------------------D  347 (368)
T ss_dssp             TTSCEEEEEEEESSS-CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-------------------C
T ss_pred             eecCCceEEEEECCC-CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-------------------C
Confidence                 3599999987 55666665 4467889999999944 456777899999999998                   8


Q ss_pred             ccceeeccccceEEEEEe
Q 018697          305 SLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       305 ~~~~~~~~~~~~v~~~~~  322 (351)
                      +.+.++..... .+.|++
T Consensus       348 k~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         348 QDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEEECCCCSC-CCEEEC
T ss_pred             CEEEEEECCCC-CCEEEE
Confidence            88877765433 344544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.41  E-value=1.5e-10  Score=97.22  Aligned_cols=257  Identities=9%  Similarity=-0.005  Sum_probs=146.8

Q ss_pred             eeecCCCCcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcc
Q 018697           20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP   99 (351)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~   99 (351)
                      .++.++++...+++..     .+.+..+.++.+.+..... ..........+.++++++.++.+.. ....+.|..+.+.
T Consensus        43 s~la~s~d~~~ly~~~-----~~~~~~~~i~~~~~~~~~~-~~~~~~~p~~v~~~~~~~~~~v~~a-~~~~~~v~~~~~~  115 (365)
T d1jofa_          43 SWMTFDHERKNIYGAA-----MKKWSSFAVKSPTEIVHEA-SHPIGGHPRANDADTNTRAIFLLAA-KQPPYAVYANPFY  115 (365)
T ss_dssp             SEEEECTTSSEEEEEE-----BTEEEEEEEEETTEEEEEE-EEECCSSGGGGCTTSCCEEEEEEEC-SSTTCCEEEEEES
T ss_pred             CEEEEcCCCCEEEEEe-----CCcEEEEEEeCCCCeEEEe-eecCCCCcEEEEECCCCCEEEEEEe-cCCCCEEEEeEcc
Confidence            3466777776666643     3667788888765533322 2223345678899999986543321 2234455554443


Q ss_pred             cccCC-------CCCCcceeeee-eeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccce
Q 018697          100 ELYGQ-------LNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL  171 (351)
Q Consensus       100 ~~~~~-------~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v  171 (351)
                      .....       ........... -......+.++.|+|+|++++++......|.+|+......................
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            11000       00000011111 11122346899999999975555444568888887643332222111111122367


Q ss_pred             eeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeec------------------c--e-eEEEEcCCCCCcEEEEecC
Q 018697          172 SGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEH------------------A--H-VRNVDYDTKKKHLLVTAAD  229 (351)
Q Consensus       172 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~------------------~--~-v~~~~~~~~~~~~l~~~~~  229 (351)
                      ..++|+|+++++++.. .++.|.+|++..+........                  .  . ...+.++|+|++++++...
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            8899999999887766 578999999876543221110                  0  1 5678999999955554332


Q ss_pred             C-----CeEEEEecccCCcceeEe-----eCCCCceeEEEecC-CCCCeEE-EeeCCCeEEEEEcCC
Q 018697          230 E-----SGIHLWDLRMLKAPIQEL-----PGHTHWTWAVCCNP-EYDGFIL-SAGTDSTVNLWLVST  284 (351)
Q Consensus       230 d-----g~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~l~-s~~~dg~i~iwd~~~  284 (351)
                      +     +.|..|++...+......     .........++++| +| ++|+ +...++.|.+|++..
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEET
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEeC
Confidence            2     348888876533221111     12334567899998 67 6554 556788999999865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=1.4e-10  Score=92.66  Aligned_cols=234  Identities=13%  Similarity=0.054  Sum_probs=145.0

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEE-ecCCc
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEEN  144 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~d~~  144 (351)
                      -....+++.+++...++.   .+..+.+..++...        .........+ ......+++++++.  ++++ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~---~~~~~~i~~~~~~~--------~~~~~~~~~~-~~~p~gvav~~~g~--i~v~d~~~~~   79 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTS---EGMYGRVVKLATGS--------TGTTVLPFNG-LYQPQGLAVDGAGT--VYVTDFNNRV   79 (260)
T ss_dssp             CCEEEEEECTTCCEEEEE---CSSSCEEEEEC------------CEEECCCCS-CCSCCCEEECTTCC--EEEEETTTEE
T ss_pred             CCCCEEEEcCCCCEEEEE---cCCCCEEEEEcCCC--------ceEEEeccCC-ccCceEEEEcCCCC--EEEeeeeece
Confidence            455799999998866654   35566777776551        1122222222 23457889999987  4454 44555


Q ss_pred             EEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCc
Q 018697          145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKH  222 (351)
Q Consensus       145 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~  222 (351)
                      +++++-.+..   ......   ......++++.++++.+++-..+..+..++............. . ...++++|++. 
T Consensus        80 i~~~~~~~~~---~~~~~~---~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-  152 (260)
T d1rwia_          80 VTLAAGSNNQ---TVLPFD---GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-  152 (260)
T ss_dssp             EEECTTCSCC---EECCCC---SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-
T ss_pred             eeeeeeccce---eeeeee---eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-
Confidence            5555433221   111111   1235788999998887666556677777776543321111111 2 78899999997 


Q ss_pred             EEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcc
Q 018697          223 LLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ  301 (351)
Q Consensus       223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  301 (351)
                      ++++...++.|..+|... .. ...+. ........|+++++| .++++....+.|..++...                 
T Consensus       153 ~~v~~~~~~~i~~~d~~~-~~-~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~-----------------  212 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAES-NN-QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS-----------------  212 (260)
T ss_dssp             EEEEEGGGTEEEEECTTT-CC-EEECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTC-----------------
T ss_pred             Eeeecccccccccccccc-ce-eeeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCC-----------------
Confidence            788888888999999875 22 22322 344567899999999 8888888888888887654                 


Q ss_pred             cccccceee-ccccceEEEEEeCCCCCceEEEeeeCCeEEEeec
Q 018697          302 RANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV  344 (351)
Q Consensus       302 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~  344 (351)
                        . ....+ ...-....+|+++++|. ++++-..+++|+..+.
T Consensus       213 --~-~~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 --T-TSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             --S-CCEECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred             --C-eEEEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeC
Confidence              1 11122 11223468999999998 7777777776765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.6e-10  Score=89.90  Aligned_cols=211  Identities=7%  Similarity=0.018  Sum_probs=121.2

Q ss_pred             eeeeeeeccccceeEEEecCCCCCcEEEEecCC--cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec
Q 018697          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC  188 (351)
Q Consensus       111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  188 (351)
                      .....+..+...+...+|||||+.++++....+  .+.+.+.......  ...    .+........|+|+++.++....
T Consensus        29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVA----SFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEE----CCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--EEe----eeecccccceecCCCCeeeEeee
Confidence            334444456677889999999998555554433  4555565543222  111    12336778899999999887653


Q ss_pred             -CCeEEEEEcccCC--cCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCC
Q 018697          189 -ESSVQFWDLRSMG--KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY  264 (351)
Q Consensus       189 -d~~i~iwd~~~~~--~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (351)
                       ++...++......  ......... .....+++++...+++...++...+|...........+..+........|+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg  182 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG  182 (269)
T ss_dssp             TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred             cCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccccccc
Confidence             3333333333222  211112111 555667777775666666666544444433233445555566777888999999


Q ss_pred             CCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC--CeEEEe
Q 018697          265 DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD--GRVVVE  342 (351)
Q Consensus       265 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~vw  342 (351)
                      ..++......+...+|.....                  .... ....+........|+|||++++.+....  ..|+++
T Consensus       183 ~~~~~~~~~~~~~~i~~~~~~------------------~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         183 KFMVMVSSNGGQQHIAKQDLA------------------TGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             SEEEEEEECSSCEEEEEEETT------------------TCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ceeEEEeecCCceeeeEeecc------------------cccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            444444445555555555431                  1112 2223344567789999999655554433  457788


Q ss_pred             ecCc
Q 018697          343 SVKP  346 (351)
Q Consensus       343 ~~~~  346 (351)
                      +++.
T Consensus       244 ~~dg  247 (269)
T d2hqsa1         244 STDG  247 (269)
T ss_dssp             ETTS
T ss_pred             ECCC
Confidence            8764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.34  E-value=1.4e-09  Score=88.72  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=146.3

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcE
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI  145 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v  145 (351)
                      ..+..+++.|+|+.+++.    ..++.|..|+..          . ....+......+.+++|.++|+ ++++...++.+
T Consensus        28 ~~~e~iAv~pdG~l~vt~----~~~~~I~~i~p~----------g-~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~   91 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTN----HEVGEIVSITPD----------G-NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSI   91 (302)
T ss_dssp             CCEEEEEECTTSCEEEEE----TTTTEEEEECTT----------C-CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             CCcCCEEECCCCCEEEEe----CCCCEEEEEeCC----------C-CEEEEEcCCCCcceEEEcCCCC-eEEEecCCceE
Confidence            357789999999876663    567777777644          1 2334455667899999999998 45555667888


Q ss_pred             EEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec---------c-e--eEE
Q 018697          146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------A-H--VRN  213 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~-~--v~~  213 (351)
                      ..++..............  ........+.+.++++.+++.+.++.+..+|...+........         . .  ...
T Consensus        92 ~~~~~~~~~~~~~~~~~~--~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             EEEEecccccceeecccc--CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            888876533322222111  1123678899999998887777888888888776532211110         1 1  566


Q ss_pred             EEcCCCCCcEEEEecCCCeEEEEecccCCcce-eEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCC
Q 018697          214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPI-QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  292 (351)
                      +.+..  ..++++.+..+.|+.++........ ............++++++| .++++...++.|..++...        
T Consensus       170 i~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G--------  238 (302)
T d2p4oa1         170 LKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDR--------  238 (302)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTC--------
T ss_pred             ccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCC--------
Confidence            66654  3478888889999999987532211 1111123445789999999 8888888888888887653        


Q ss_pred             cccccCCcccccccceeeccccceEEEEEe---CCCCCceEEE
Q 018697          293 ESLVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFAS  332 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s  332 (351)
                                ....+......-...++++|   ++|++.++++
T Consensus       239 ----------~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         239 ----------STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             ----------CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             ----------CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence                      01122233333345789999   6777744444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.6e-09  Score=87.33  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=155.2

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec------cccceeEEEecCCCCCcEEEE-
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA------HVGKINCVLWWSSGRHDKLVS-  139 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~~~~-  139 (351)
                      ....+++.++++.+++    ...++.|++||.+          ++.+..+..      .......+++.++....+++. 
T Consensus        24 ~P~gvavd~dg~i~Va----D~~n~rI~v~d~~----------G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   89 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVA----DTNNHRIQIFDKE----------GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER   89 (279)
T ss_dssp             CEEEEEECTTCCEEEE----EGGGTEEEEECTT----------SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred             CccEEEEcCCCCEEEE----ECCCCEEEEEeCC----------CCEEEEecccCCCcccccccccccccccccccceecc
Confidence            4578999998875555    2466789999865          333333321      112234556555544334444 


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecc-e---eEEEE
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVD  215 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---v~~~~  215 (351)
                      +.++.|..++... . ......   .........+++.+++..+++....+.+.+++.. ++.+..+... +   ...++
T Consensus        90 ~~~~~i~~~~~~g-~-~~~~~~---~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~  163 (279)
T d1q7fa_          90 SPTHQIQIYNQYG-Q-FVRKFG---ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVV  163 (279)
T ss_dssp             GGGCEEEEECTTS-C-EEEEEC---TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEE
T ss_pred             CCccccccccccc-c-ceeecC---CCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceee
Confidence            4566777777652 2 111111   1223357788999998877777777888888865 4444444311 2   88899


Q ss_pred             cCCCCCcEEEEecCCCeEEEEecccCCcceeEee--CCCCceeEEEecCCCCCeEEEeeC-CCeEEEEEcCCCCCCCCCC
Q 018697          216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPS  292 (351)
Q Consensus       216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~  292 (351)
                      +.+++. ++++....+.|++||..  ++.+.++.  +.......|++.++| +++++-.. ++.|.+|+..         
T Consensus       164 ~d~~g~-i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~---------  230 (279)
T d1q7fa_         164 VNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD---------  230 (279)
T ss_dssp             ECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT---------
T ss_pred             ecccee-EEeeeccccceeeeecC--CceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCC---------
Confidence            999987 78888888999999976  55566653  344557899999999 77766544 4579999854         


Q ss_pred             cccccCCcccccccceeeccc--cceEEEEEeCCCCCceEEEeeeCCeEEEeecCcccc
Q 018697          293 ESLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLS  349 (351)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  349 (351)
                                 ++.+.++...  ......|++.|+|. ++++ ..+..|++|+.....|
T Consensus       231 -----------G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         231 -----------GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             -----------SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred             -----------CCEEEEEeCCCCCCCEeEEEEeCCCc-EEEE-eCCCeEEEEEeeeecC
Confidence                       5666555322  23478999999986 5554 5689999999887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=9.7e-11  Score=102.06  Aligned_cols=137  Identities=8%  Similarity=0.009  Sum_probs=94.5

Q ss_pred             eeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeee-----eeeccccceeEEEecCCCCCcEEEEe---
Q 018697           69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-----ALDAHVGKINCVLWWSSGRHDKLVSI---  140 (351)
Q Consensus        69 ~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~~~~~---  140 (351)
                      ..+.|.++++++..      .++.+.+||+.         +.+...     .+..|...|.++.|+||++++++++.   
T Consensus        20 ~~~~W~~d~~~~~~------~~~~~~~~~~~---------t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~   84 (470)
T d2bgra1          20 YSLRWISDHEYLYK------QENNILVFNAE---------YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (470)
T ss_dssp             CCCEECSSSEEEEE------SSSCEEEEETT---------TCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE------cCCcEEEEECC---------CCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc
Confidence            36789998875543      57789999998         333333     33455678999999999997544431   


Q ss_pred             -----cCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce-----
Q 018697          141 -----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----  210 (351)
Q Consensus       141 -----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----  210 (351)
                           .++.+.+||+.++... .+     ..+...+..+.|+|||+.++.. .++.+++|+..+++.........     
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~~-~l-----~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~  157 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQLI-TE-----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY  157 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEEC-CS-----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             eeeeccCceEEEEECCCCccc-cc-----ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccc
Confidence                 2467899999965322 11     1234478899999999999885 47789999998876543322110     


Q ss_pred             ---------------eEEEEcCCCCCcEEEEec
Q 018697          211 ---------------VRNVDYDTKKKHLLVTAA  228 (351)
Q Consensus       211 ---------------v~~~~~~~~~~~~l~~~~  228 (351)
                                     ...+.|+|||+ .|+...
T Consensus       158 ~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~  189 (470)
T d2bgra1         158 NGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQ  189 (470)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEE
T ss_pred             ccccceeeeeeecCCccccEECCCCC-ccceeE
Confidence                           35578999999 455543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=1.5e-08  Score=82.75  Aligned_cols=247  Identities=9%  Similarity=-0.024  Sum_probs=150.3

Q ss_pred             ceeeeeeCCCCCceEEEEee---cCCcceEEEEEcccccCCCCCCcceeeeeee----ccccceeEEEecCCCCCcEEEE
Q 018697           67 EIWDLSSCPFDQRIFSTVFS---TGESYGAAIWQIPELYGQLNSPQLERIAALD----AHVGKINCVLWWSSGRHDKLVS  139 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~---~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~~~~  139 (351)
                      ....++|.|+|+.+++....   ...++.|..|+..         .........    ........+.|.+++.. ++++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~---------~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~-l~va   88 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK---------TGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVA   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT---------TCCEEEEECCEETTEECCEEEEEECSSSSE-EEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECC---------CCcEEEEECCccccCCCcceeEEEeCCCCE-EEEE
Confidence            44567899999866653100   0113557777765         222111111    11223568999999984 4445


Q ss_pred             ecCCcEEEEEcCCCCCCcccccccccCc-ccceeeeEECCCCCcEEEeec---------------CCeEEEEEcccCCcC
Q 018697          140 IDEENIFLWSLDCSNKNAQVQSKQSSGM-LHYLSGGAWDPHDVNAVAATC---------------ESSVQFWDLRSMGKT  203 (351)
Q Consensus       140 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~  203 (351)
                      .....|...+.+...  ..+......+. ....+.+++.++|...++-..               .|.|..++.. ++..
T Consensus        89 d~~~~i~~~~~~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~  165 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ETTTEEEEEETTSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             ECCCeEEEEeCCCcE--EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee
Confidence            445668888876432  11111111111 124678999999987665321               2344444432 2222


Q ss_pred             ceeecce-eEEEEcCCCCC----cEEEEecCCCeEEEEecccCCcce-----eEeeC-CCCceeEEEecCCCCCeEEEee
Q 018697          204 NSIEHAH-VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPI-----QELPG-HTHWTWAVCCNPEYDGFILSAG  272 (351)
Q Consensus       204 ~~~~~~~-v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~~l~s~~  272 (351)
                      ....... .+.++|+|++.    .++++-+..+.|..||+...+...     ..+.. .......+++.++| ++.++..
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~  244 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANW  244 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEE
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEc
Confidence            2221111 67889988764    366667788999999987543321     11111 12345689999999 8878777


Q ss_pred             CCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       273 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      ..+.|.+||...                   +..+..+......+++++|.|+++.++++.+.++.|...+++.
T Consensus       245 ~~g~I~~~dp~~-------------------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         245 GSSHIEVFGPDG-------------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTC-------------------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEeCCC-------------------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            788999999886                   5666666555566889999999876778888889888888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.17  E-value=1.6e-07  Score=76.86  Aligned_cols=228  Identities=10%  Similarity=-0.008  Sum_probs=138.2

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec--C--
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--E--  142 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d--  142 (351)
                      .+..++|.++++..++    ....+.|..|+..         .......+.........+++.++|+ ++++...  .  
T Consensus        41 ~lEG~~~D~~G~Ly~~----D~~~g~I~ri~p~---------g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~  106 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLL----DVFEGNIFKINPE---------TKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKST  106 (319)
T ss_dssp             CEEEEEECTTSCEEEE----ETTTCEEEEECTT---------TCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSC
T ss_pred             CcEeCEECCCCCEEEE----ECCCCEEEEEECC---------CCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccc
Confidence            4468899999874444    3567778777765         2233333444556778999999998 3444422  2  


Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec------CCeEEEEEcccCCcCceeecc-e-eEEE
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHA-H-VRNV  214 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~-~-v~~~  214 (351)
                      +.+...+..... ........  .-......+++.++|+..++...      .+.+..++...+ .+..+... . .+.+
T Consensus       107 ~~i~~~~~~~~~-~~~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGi  182 (319)
T d2dg1a1         107 GGIFAATENGDN-LQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGI  182 (319)
T ss_dssp             CEEEEECTTSCS-CEEEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEE
T ss_pred             eeEEEEcCCCce-eeeeccCC--CcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeee
Confidence            234444443321 11111111  11225778999999985554322      234555554433 22222212 2 7889


Q ss_pred             EcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCC
Q 018697          215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNH  287 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  287 (351)
                      +|+|+++.++++-+..+.|+.||+...........       ........+++.++| ++.++....+.|.+||..    
T Consensus       183 a~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~----  257 (319)
T d2dg1a1         183 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR----  257 (319)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTT----
T ss_pred             eeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCC----
Confidence            99999986667777889999999875433222111       112235689999999 888888889999999964    


Q ss_pred             CCCCCcccccCCcccccccceeec------cccceEEEEEeCCCCCceEEEe
Q 018697          288 DELPSESLVESPNQRANSLLNSYS------DYEDSVYGLAWSSREPWIFASL  333 (351)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~  333 (351)
                                      ++.+..+.      .+...+++++|.+++..++++.
T Consensus       258 ----------------G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 ----------------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             ----------------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ----------------CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                            56555553      2334578999999877444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.08  E-value=1.4e-07  Score=76.10  Aligned_cols=227  Identities=8%  Similarity=-0.013  Sum_probs=147.0

Q ss_pred             eeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEE
Q 018697           70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS  149 (351)
Q Consensus        70 ~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd  149 (351)
                      ...|.+....|.-+   .-..+.|..||..         ..+ ...+ .....+.++++.+++.  +++++. ..+.++|
T Consensus        22 gp~wd~~~~~l~wv---Di~~~~I~r~d~~---------~g~-~~~~-~~~~~~~~i~~~~dg~--l~va~~-~gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWWF---NILERELHELHLA---------SGR-KTVH-ALPFMGSALAKISDSK--QLIASD-DGLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEEE---EGGGTEEEEEETT---------TTE-EEEE-ECSSCEEEEEEEETTE--EEEEET-TEEEEEE
T ss_pred             CCeEECCCCEEEEE---ECCCCEEEEEECC---------CCe-EEEE-ECCCCcEEEEEecCCC--EEEEEe-CccEEee
Confidence            45677766665544   2356678888876         222 2222 2345678899999987  555554 4688999


Q ss_pred             cCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec----CCeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEE
Q 018697          150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLL  224 (351)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l  224 (351)
                      ..++... .+...........++++.+.|+|+..++...    .+.-.+|.+..++......... .+.++|+++++.++
T Consensus        85 ~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          85 TATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             TTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             cccceee-EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEE
Confidence            8865432 2211111122336889999999986665542    2345667776665433333222 78999999998777


Q ss_pred             EEecCCCeEEEEecccCCc-----c--eeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCccccc
Q 018697          225 VTAADESGIHLWDLRMLKA-----P--IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE  297 (351)
Q Consensus       225 ~~~~~dg~i~i~d~~~~~~-----~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  297 (351)
                      ++-+..+.|..|++.....     .  ...+.+.......+++..+| ++.++.-..+.|..||..              
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~--------------  228 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD--------------  228 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT--------------
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCC--------------
Confidence            7788889999998753211     1  11122334567889999999 777777677889999964              


Q ss_pred             CCcccccccceeeccccceEEEEEeC-CCCCceEEEeee
Q 018697          298 SPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSY  335 (351)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~  335 (351)
                            ++.+..+.-....+++++|- |+.+.+++|...
T Consensus       229 ------G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         229 ------GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ------CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ------CcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence                  67777776555568999995 676757776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=1.5e-08  Score=80.58  Aligned_cols=195  Identities=12%  Similarity=0.001  Sum_probs=123.6

Q ss_pred             cceeEEEecCCCCCcEEEE-ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEccc
Q 018697          121 GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS  199 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  199 (351)
                      .....+++.++|. ++++. +..+.+..++........  ....  + ......+++++++..+++....+.+++++..+
T Consensus        14 ~~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~~~--~~~~--~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          14 LSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV--LPFN--G-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCEEEEEECTTCC-EEEEECSSSCEEEEEC----CEEE--CCCC--S-CCSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             CCCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceEEE--eccC--C-ccCceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            3457899999998 35555 455777777666432111  1111  1 12467889999988665555566666665544


Q ss_pred             CCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeE
Q 018697          200 MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTV  277 (351)
Q Consensus       200 ~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i  277 (351)
                      ........... +..+++.+++. ++++-..+..+..++... . ....+. .-......++++|++ .++++...++.|
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~-~-~~~~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i  163 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGS-K-TQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRV  163 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTC-S-SCEECCCCSCCSCCEEEECTTC-CEEEEEGGGTEE
T ss_pred             ceeeeeeeeeeecccccccccce-eEeecccccccccccccc-c-eeeeeeecccCCcceeeecCCC-CEeeeccccccc
Confidence            44333333223 88999999997 677666677788887654 2 222221 123445789999999 788888888899


Q ss_pred             EEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ..+|...                   ..........-.....|++.++|. ++++....+.|..++..
T Consensus       164 ~~~d~~~-------------------~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         164 VKLEAES-------------------NNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             EEECTTT-------------------CCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTT
T ss_pred             ccccccc-------------------ceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCC
Confidence            9998875                   222211123334468899999988 78888778888877754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.99  E-value=4e-07  Score=74.15  Aligned_cols=196  Identities=16%  Similarity=0.151  Sum_probs=121.2

Q ss_pred             ceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc---cceeEEEecCCCCCcEEEEec--
Q 018697           67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV---GKINCVLWWSSGRHDKLVSID--  141 (351)
Q Consensus        67 ~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~--  141 (351)
                      .-..++|.+++..++++    .....|...+...        ....+.......   ...+.+++.++|. ++++...  
T Consensus        72 ~P~Gl~~~~dg~~l~va----d~~~~i~~~~~~g--------~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~  138 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVA----DMRLGLLVVQTDG--------TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGE  138 (314)
T ss_dssp             CEEEEEECSSSSEEEEE----ETTTEEEEEETTS--------CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCB
T ss_pred             cceeEEEeCCCCEEEEE----ECCCeEEEEeCCC--------cEEEEEeccccccccCCCcEEEECCCCC-EEEecCccC
Confidence            45689999999877775    2334577777651        111111111111   1357789999998 3444221  


Q ss_pred             -------------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCC----cEEEe-ecCCeEEEEEcccCCcC
Q 018697          142 -------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV----NAVAA-TCESSVQFWDLRSMGKT  203 (351)
Q Consensus       142 -------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~-~~d~~i~iwd~~~~~~~  203 (351)
                                   .|.|..++.+  .....+..     .....+.++|+|+++    .|+++ +..+.|..||+.....+
T Consensus       139 ~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~~~-----~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~  211 (314)
T d1pjxa_         139 VAPADYTRSMQEKFGSIYCFTTD--GQMIQVDT-----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT--SCEEEEEE-----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             cccccccceeccCCceEEEEeec--CceeEeeC-----CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc
Confidence                         1233333332  22222211     111456889988764    45544 56789999988654322


Q ss_pred             c------eeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          204 N------SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       204 ~------~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      .      .+....   .-.+++.++|+ ++++....+.|.+||.+. ++.+..+.......++++|.|+++.++++.+.+
T Consensus       212 ~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         212 ENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             EEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC
Confidence            1      111111   56799999997 777777789999999875 555666666667789999999984577788888


Q ss_pred             CeEEEEEcCC
Q 018697          275 STVNLWLVST  284 (351)
Q Consensus       275 g~i~iwd~~~  284 (351)
                      +.|..+++..
T Consensus       290 g~i~~~~~~~  299 (314)
T d1pjxa_         290 NAVWKFEWQR  299 (314)
T ss_dssp             TEEEEEECSS
T ss_pred             CcEEEEECCC
Confidence            9888888876

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=1.3e-07  Score=76.84  Aligned_cols=205  Identities=10%  Similarity=-0.003  Sum_probs=130.2

Q ss_pred             eeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCC
Q 018697          111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES  190 (351)
Q Consensus       111 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  190 (351)
                      +.+..+.. ...+..+++.|+|+ ++++...+++|..|+...  ..... . .   ....+.+++|+++++.+++...++
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g--~~~~~-~-~---~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQQIH-A-T---VEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CEEEE-E-E---CSSEEEEEEECTTSCEEEEEECTT
T ss_pred             cEEEECCC-CCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCC--CEEEE-E-c---CCCCcceEEEcCCCCeEEEecCCc
Confidence            34444432 22577899999998 455556688888887653  22211 1 1   223789999999999888887888


Q ss_pred             eEEEEEcccCCcCceee----cce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee---------CCCCcee
Q 018697          191 SVQFWDLRSMGKTNSIE----HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---------GHTHWTW  256 (351)
Q Consensus       191 ~i~iwd~~~~~~~~~~~----~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~v~  256 (351)
                      .+..++...........    ... .+.+++.+++. ++++.+.++.+..+|.......+....         .......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence            88888876543322211    122 88999999997 788888888888888775211111111         1112345


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeC
Q 018697          257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD  336 (351)
Q Consensus       257 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  336 (351)
                      .+.++.  ..++++.+..+.|..++......                ......+ .......++++.++|. ++++...+
T Consensus       169 gi~~~~--~~l~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~-~~~~~pdgia~d~dG~-l~va~~~~  228 (302)
T d2p4oa1         169 GLKRFG--NFLYVSNTEKMLLLRIPVDSTDK----------------PGEPEIF-VEQTNIDDFAFDVEGN-LYGATHIY  228 (302)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEEBCTTSC----------------BCCCEEE-EESCCCSSEEEBTTCC-EEEECBTT
T ss_pred             cccccC--CceeeecCCCCeEEecccccccc----------------ccccccc-cCCCCCcceEECCCCC-EEEEEcCC
Confidence            666654  25677777888888888765111                0111111 1223356799999998 78887778


Q ss_pred             CeEEEeecC
Q 018697          337 GRVVVESVK  345 (351)
Q Consensus       337 g~v~vw~~~  345 (351)
                      +.|..++..
T Consensus       229 ~~V~~i~p~  237 (302)
T d2p4oa1         229 NSVVRIAPD  237 (302)
T ss_dssp             CCEEEECTT
T ss_pred             CcEEEECCC
Confidence            888888765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.4e-07  Score=77.53  Aligned_cols=283  Identities=10%  Similarity=0.051  Sum_probs=146.2

Q ss_pred             cCCCCcceEEEeeeee-----CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEE
Q 018697           23 KADTDHTSFLTGTLSL-----KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ   97 (351)
Q Consensus        23 ~~~~~~~~~~~g~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~   97 (351)
                      .++|+...+++.+...     ...+.+.++++.......+ .........+....|||+|+.++.+     .++.|.+.+
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-~~~~~~~~~l~~~~wSPDG~~iafv-----~~~nl~~~~  140 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-DPPEVSNAKLQYAGWGPKGQQLIFI-----FENNIYYCA  140 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-CCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEEEEES
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec-cCccCCccccceeeeccCCceEEEE-----ecceEEEEe
Confidence            3567777777664321     1235666777665432211 1112234556678999999999886     456677776


Q ss_pred             cccccCCCCCCcceeeeee-ecccc-----------------ceeEEEecCCCCCcEEEEecCCcEEEEEcCC-------
Q 018697           98 IPELYGQLNSPQLERIAAL-DAHVG-----------------KINCVLWWSSGRHDKLVSIDEENIFLWSLDC-------  152 (351)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~h~~-----------------~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-------  152 (351)
                      ...         ...++.. .+...                 .-..+-|||||+++++...++..|..+.+..       
T Consensus       141 ~~~---------~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p  211 (465)
T d1xfda1         141 HVG---------KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (465)
T ss_dssp             SSS---------SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             cCC---------CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccc
Confidence            652         1111111 11111                 1146779999997555545556555554421       


Q ss_pred             --------------------------CCCCccccccc-ccCcccceeeeEECCCCCcEEEeec----CCeEEEEEcccCC
Q 018697          153 --------------------------SNKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMG  201 (351)
Q Consensus       153 --------------------------~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~  201 (351)
                                                +.......... .......+..+.|+|+++.++....    ...+.++|..+++
T Consensus       212 ~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence                                      11100000000 0011123567889998876555432    2367889998887


Q ss_pred             cCceeecce-------eEEEEcCCCCCcEEEE-ec-CCC--eEEEEecc-----cCCcceeEeeCCCCceeEE-EecCCC
Q 018697          202 KTNSIEHAH-------VRNVDYDTKKKHLLVT-AA-DES--GIHLWDLR-----MLKAPIQELPGHTHWTWAV-CCNPEY  264 (351)
Q Consensus       202 ~~~~~~~~~-------v~~~~~~~~~~~~l~~-~~-~dg--~i~i~d~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~  264 (351)
                      ....+....       -....|+|+|+.++.. .+ .+|  .++.+++.     ..+..+..+....-.|..+ .|++++
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~  371 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCC
Confidence            654443211       2346789999854332 22 232  34444332     1122334444334445664 588887


Q ss_pred             CCeEEEeeCCC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee
Q 018697          265 DGFILSAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS  334 (351)
Q Consensus       265 ~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  334 (351)
                      ..+.+++..++  .-++|.+...+...              .+++...........++.|||++++++.+++
T Consensus       372 ~~vyF~a~~~~p~~~hly~v~l~g~~~--------------~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         372 NKIYFLSTEDLPRRRQLYSANTVGNFN--------------RQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCC--------------CBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CEEEEEEeCCCCCceEEEEEECCCCCc--------------ceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            45555666543  34566665311100              1222111123335678999999996555554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=9.9e-07  Score=71.96  Aligned_cols=204  Identities=10%  Similarity=0.033  Sum_probs=121.8

Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec----CCeEEEEE
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWD  196 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd  196 (351)
                      ..+..++|.++|+ ++++-...+.|..|+....... .....    .......++++++++.+++...    .+.+...+
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~-~~~~~----~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIK-RPFVS----HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEE-EEEEC----SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEE-EEEeC----CCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            3456899999997 4555566788988888753222 21111    1225788999999986666433    23455555


Q ss_pred             cccCCcCceeecc---e-eEEEEcCCCCCcEEEEecC------CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCC
Q 018697          197 LRSMGKTNSIEHA---H-VRNVDYDTKKKHLLVTAAD------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG  266 (351)
Q Consensus       197 ~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (351)
                      .............   . ++.+++.++|+ +.++...      .+.+..++..  ...+..+...-...+.++|+|+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecc--cceeEEEeeccceeeeeeeccccce
Confidence            5544433322211   1 88999999998 5665332      2335555543  3334444333345688999999944


Q ss_pred             eEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       267 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      ++++-+..+.|..||+........           ..................+++.++|. ++++....+.|.+|+..
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~-----------~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQ-----------PFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEE-----------EEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             EEEecccCCceEEEEEcCCCceec-----------cccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCC
Confidence            556667788999999875110000           00000011111122357899999998 78888888999999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=2.7e-06  Score=67.82  Aligned_cols=194  Identities=10%  Similarity=0.080  Sum_probs=125.1

Q ss_pred             eeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee-ccccceeEEEecCCCCCcEEEEecCCcEE
Q 018697           68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIF  146 (351)
Q Consensus        68 v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~  146 (351)
                      ...+++.++....+.+.  .+.++.|.+++..          +.....+. ........+++.+++. ++++....+.+.
T Consensus        72 p~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~----------g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~  138 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTE--RSPTHQIQIYNQY----------GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVI  138 (279)
T ss_dssp             EEEEEEETTTTEEEEEE--CGGGCEEEEECTT----------SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred             cccccccccccccceec--cCCcccccccccc----------ccceeecCCCcccccceeccccCCc-EEEEeeccceee
Confidence            34455555544444432  3455567776644          34444442 2345677889999887 355545567788


Q ss_pred             EEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeec-ce---eEEEEcCCCCCc
Q 018697          147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH---VRNVDYDTKKKH  222 (351)
Q Consensus       147 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~---v~~~~~~~~~~~  222 (351)
                      +++.+.  ......  ....+......+++.++++.+++....+.|++||.. ++.+..+.. +.   +..+++.++|+ 
T Consensus       139 ~~~~~g--~~~~~~--g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~-  212 (279)
T d1q7fa_         139 IFDQNG--NVLHKF--GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-  212 (279)
T ss_dssp             EECTTS--CEEEEE--ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-
T ss_pred             EeccCC--ceeecc--cccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCe-
Confidence            887652  111111  112234467888999988877777788999999975 455555532 12   88999999998 


Q ss_pred             EEEEec-CCCeEEEEecccCCcceeEeeC--CCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          223 LLVTAA-DESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       223 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ++++-. .++.|.+|+..  ++.+..+..  .......|++.|+| .+++ ++.+..|++|....
T Consensus       213 i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~~p~~vav~~dG-~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         213 ILIADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDG-SVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTT-EEEE-EETTTEEEEEECSC
T ss_pred             EEEEECCCCcEEEEECCC--CCEEEEEeCCCCCCCEeEEEEeCCC-cEEE-EeCCCeEEEEEeee
Confidence            666644 45679999854  556666643  23457899999999 6655 45789999999986

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.1e-07  Score=79.09  Aligned_cols=217  Identities=15%  Similarity=0.156  Sum_probs=121.6

Q ss_pred             CCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEee-----cCCcceEEEEEcccccCCCCCCcceee
Q 018697           39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERI  113 (351)
Q Consensus        39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~  113 (351)
                      ..++.+.+++........+.....-..-.+....||||++.++.....     -+..+.+.++|+..       ...+.+
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-------~~~~~l  106 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------GDPQSL  106 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------CCCEEC
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-------Cceeec
Confidence            345677777776655444333222233466778899999988775311     02346788899872       122333


Q ss_pred             eeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCc--------------ccceeeeEECCC
Q 018697          114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM--------------LHYLSGGAWDPH  179 (351)
Q Consensus       114 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~  179 (351)
                      .........+....|||+|+.++++  .++.|.+.+...+.....+.. ...+.              ...-.++.|+||
T Consensus       107 ~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~~~~lt~~-g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD  183 (465)
T d1xfda1         107 DPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPD  183 (465)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred             cCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCceEEEecc-cCcceeeccccchhhhhhhccccceEEECCC
Confidence            3233334556678899999974333  367888888875443222211 11110              011246789999


Q ss_pred             CCcEEEeec-CC---------------------------------eEEEEEcccCCcCceee-------cce-eEEEEcC
Q 018697          180 DVNAVAATC-ES---------------------------------SVQFWDLRSMGKTNSIE-------HAH-VRNVDYD  217 (351)
Q Consensus       180 ~~~l~~~~~-d~---------------------------------~i~iwd~~~~~~~~~~~-------~~~-v~~~~~~  217 (351)
                      |++|+.... +.                                 .+.++|+.++.......       ..+ +..+.|+
T Consensus       184 gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~  263 (465)
T d1xfda1         184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA  263 (465)
T ss_dssp             SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred             CCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc
Confidence            999987642 22                                 24566665543221111       112 7889999


Q ss_pred             CCCCcEEEEe-cCC---CeEEEEecccCCcceeEee-CCCCce----eEEEecCCCCCe
Q 018697          218 TKKKHLLVTA-ADE---SGIHLWDLRMLKAPIQELP-GHTHWT----WAVCCNPEYDGF  267 (351)
Q Consensus       218 ~~~~~~l~~~-~~d---g~i~i~d~~~~~~~~~~~~-~~~~~v----~~~~~~~~~~~~  267 (351)
                      |+++ +++.. ..+   ..+.++|..+ ++....+. ....+|    ....|+|+|..+
T Consensus       264 ~d~~-~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         264 TSTK-VAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SSSE-EEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             CCCe-EEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            9997 45443 222   3688888876 44333332 222333    346789999443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.70  E-value=1.4e-06  Score=69.39  Aligned_cols=234  Identities=9%  Similarity=0.080  Sum_probs=118.0

Q ss_pred             eeeCCC--CCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCC-----
Q 018697           71 LSSCPF--DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-----  143 (351)
Q Consensus        71 i~~~~~--~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-----  143 (351)
                      +..+|+  |+.++.+     .++.|.+.++.         ..+ ...+..+.+.+...+|||||++++++...++     
T Consensus         4 ~~~sPdi~G~~v~f~-----~~~dl~~~d~~---------~g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~   68 (281)
T d1k32a2           4 LLLNPDIHGDRIIFV-----CCDDLWEHDLK---------SGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTA   68 (281)
T ss_dssp             CCEEEEEETTEEEEE-----ETTEEEEEETT---------TCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred             cccCCCCCCCEEEEE-----eCCcEEEEECC---------CCC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCce
Confidence            346788  9888775     34456666776         333 3456677788899999999997555553322     


Q ss_pred             cEEEEEcCCCCCCcccccc-cccCcccceeeeEECCCCCcEEEeec------CCeEEEEEcccCCcCceeecceeEEEEc
Q 018697          144 NIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMGKTNSIEHAHVRNVDY  216 (351)
Q Consensus       144 ~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~v~~~~~  216 (351)
                      .|.+++..++......... .............|+|+++.|+....      ...+...+...+....... ...... +
T Consensus        69 ~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~  146 (281)
T d1k32a2          69 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GPATHI-L  146 (281)
T ss_dssp             EEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CSCSEE-E
T ss_pred             EEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC-Ccccee-e
Confidence            3666776654322211111 01112224567789999998887542      2234455555433211111 112222 2


Q ss_pred             CCCCCcEEEEecCCC-----------eEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCC--eEEEEEcC
Q 018697          217 DTKKKHLLVTAADES-----------GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS--TVNLWLVS  283 (351)
Q Consensus       217 ~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~  283 (351)
                      .+++...++....+.           ......... . ................++++.  ++.....++  .|.++|+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~  222 (281)
T d1k32a2         147 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLD  222 (281)
T ss_dssp             EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETT
T ss_pred             ecCCCeEEEeeccccceeeeeccCCcceeeeeccc-c-ceeeccCCccccceeeeeccc--cceecccccccceEEEeCC
Confidence            233332333322211           111222211 1 122222333444555566543  333333333  56666776


Q ss_pred             CCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCccc
Q 018697          284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFL  348 (351)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  348 (351)
                      .                   .+ ...+..+.. .....|+|||+.++.  ..++.|+++|+..-.
T Consensus       223 g-------------------~~-~~~lt~~~~-~~~~~~SpDG~~I~f--~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         223 G-------------------KD-LRKHTSFTD-YYPRHLNTDGRRILF--SKGGSIYIFNPDTEK  264 (281)
T ss_dssp             S-------------------CS-CEECCCCCS-SCEEEEEESSSCEEE--EETTEEEEECTTTCC
T ss_pred             C-------------------Cc-eEEeecCCC-cccccCcCCCCEEEE--EeCCEEEEEECCCCC
Confidence            5                   22 222222211 122468999995444  346789999987543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=1.6e-05  Score=62.95  Aligned_cols=95  Identities=13%  Similarity=0.014  Sum_probs=57.4

Q ss_pred             CCC--cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc
Q 018697           25 DTD--HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY  102 (351)
Q Consensus        25 ~~~--~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~  102 (351)
                      +|+  +.+++.-     .++.|+++++....    ...+..+.+.+...+|||||+.|+.+....+.+....||-+... 
T Consensus         7 sPdi~G~~v~f~-----~~~dl~~~d~~~g~----~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~-   76 (281)
T d1k32a2           7 NPDIHGDRIIFV-----CCDDLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-   76 (281)
T ss_dssp             EEEEETTEEEEE-----ETTEEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-
T ss_pred             CCCCCCCEEEEE-----eCCcEEEEECCCCC----EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec-
Confidence            455  6666653     24667777776543    24456678889999999999999887654555544444444321 


Q ss_pred             CCCCCCcceeeeeeec-------cccceeEEEecCCCCCcE
Q 018697          103 GQLNSPQLERIAALDA-------HVGKINCVLWWSSGRHDK  136 (351)
Q Consensus       103 ~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~  136 (351)
                            ..+. ..+..       .........|+|+++.++
T Consensus        77 ------~g~~-~~lt~~~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          77 ------NGEI-KRITYFSGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             ------TTEE-EECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             ------CCce-EEeeecCCCccCccccccccccCCCCCEEE
Confidence                  2222 22211       223456788999999533

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.40  E-value=7.4e-05  Score=59.74  Aligned_cols=197  Identities=9%  Similarity=0.005  Sum_probs=119.5

Q ss_pred             EEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCc
Q 018697          125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  204 (351)
                      +..|.+....++.+--..+.|.-||..++...  ....     ...+.++++.+++..++ ++. ..+.++|..+++...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~~~-----~~~~~~i~~~~dg~l~v-a~~-~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT--VHAL-----PFMGSALAKISDSKQLI-ASD-DGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEEC-----SSCEEEEEEEETTEEEE-EET-TEEEEEETTTCCEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE--EEEC-----CCCcEEEEEecCCCEEE-EEe-CccEEeecccceeeE
Confidence            45688766654444456788999998864321  1111     12577888888876555 444 468899998876433


Q ss_pred             eeec-----ce-eEEEEcCCCCCcEEEEec----CCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCC
Q 018697          205 SIEH-----AH-VRNVDYDTKKKHLLVTAA----DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       205 ~~~~-----~~-v~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      ....     .. ++.+.+.|+|+ +.++..    ..+.-.+|.+.. ++...... .-...+.++|++++..++++-+..
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecC-CcEEEEee-ccCCcceeeecCCCceEEEeeccc
Confidence            2221     11 88999999998 444332    123455666654 43333332 234568899999995566677778


Q ss_pred             CeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecC
Q 018697          275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       275 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      +.|..|++........           .................++++..+|. +.++.-..+.|..|+.+
T Consensus       170 ~~I~~~~~d~~~~~~~-----------~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPT-----------GKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             CEEEEEEBCTTTCCBS-----------SCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT
T ss_pred             ceeeEeeecccccccc-----------cceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCC
Confidence            8999998754111000           00111112223344578889999988 67766667788888854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=0.0001  Score=60.45  Aligned_cols=191  Identities=16%  Similarity=0.039  Sum_probs=119.2

Q ss_pred             CCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeec-cccceeEEEecCCCCCcEEEE-ecC----------
Q 018697           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSSGRHDKLVS-IDE----------  142 (351)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~-~~d----------  142 (351)
                      +||++|++.   ...+..|.+-|+.         ..+....+.. ....+..++..++.+..++++ +.+          
T Consensus        97 yDGrylFVN---Dkan~RVAvIdl~---------~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          97 YDGRFLFMN---DKANTRVARVRCD---------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEEEEEE---ETTTTEEEEEETT---------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cceeEEEEE---cCCCceEEEEECc---------ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            378899887   4677889999988         5565443332 344556666665554445544 331          


Q ss_pred             --------CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-------------------------
Q 018697          143 --------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-------------------------  189 (351)
Q Consensus       143 --------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------------  189 (351)
                              +.+.+.|..+.+...++....      ....+.++++|+++++.+.+                         
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCC------ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                    224567776543333333221      56678999999998887642                         


Q ss_pred             -------------CeEEEEEcccC---CcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcc-------e
Q 018697          190 -------------SSVQFWDLRSM---GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP-------I  245 (351)
Q Consensus       190 -------------~~i~iwd~~~~---~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~  245 (351)
                                   +.+.+-|.+..   .....+..+. ...+.++|||+++++++.-+.++.++|+++....       .
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence                         12234444431   1122233333 7788999999988888889999999999743211       1


Q ss_pred             eEe---eCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          246 QEL---PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       246 ~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+   ....-.-..-+|+..| ....|.--|..|.-|++..
T Consensus       319 ~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         319 SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecch
Confidence            111   1122334566788888 6667777899999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=0.00093  Score=52.04  Aligned_cols=224  Identities=9%  Similarity=-0.027  Sum_probs=130.2

Q ss_pred             CcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcc
Q 018697           89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML  168 (351)
Q Consensus        89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  168 (351)
                      ..+.|+-.+++...    .........+..+...+..++|.+..+.++.+-..++.|+..+++.... ..+....    .
T Consensus         8 ~~~~I~~~~ld~~~----~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~----~   78 (263)
T d1npea_           8 QTGKIERLPLERNT----MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD----L   78 (263)
T ss_dssp             EEEEEEEEEESSSC----BCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT----C
T ss_pred             CCCeEEEEECCCcc----ccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEec----c
Confidence            34566666665210    0111222334445556888999988886555446678899888875332 2222211    2


Q ss_pred             cceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEecCCC--eEEEEecccCCc
Q 018697          169 HYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKA  243 (351)
Q Consensus       169 ~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  243 (351)
                      ..+.++++..-+..|+.+. ..+.|.+.++........+... . +..++++|...+++.+-...+  .|...++..  .
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG--~  156 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--T  156 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--C
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC--C
Confidence            2578888887677777654 5689999998865433222222 2 889999998885555543323  354445543  2


Q ss_pred             ceeEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEe
Q 018697          244 PIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW  322 (351)
Q Consensus       244 ~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  322 (351)
                      ....+. ..-.....+++++.++++..+-...+.|...|+..                   ......+.+... ..+|++
T Consensus       157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-------------------~~~~~v~~~~~~-P~~lav  216 (263)
T d1npea_         157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-------------------PGRRKVLEGLQY-PFAVTS  216 (263)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-------------------EEEEEEEECCCS-EEEEEE
T ss_pred             CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-------------------CCeEEEECCCCC-cEEEEE
Confidence            223332 23355689999988734545556678888888875                   222222333222 357777


Q ss_pred             CCCCCceEEEeeeCCeEEEeecC
Q 018697          323 SSREPWIFASLSYDGRVVVESVK  345 (351)
Q Consensus       323 ~~~~~~~l~s~~~dg~v~vw~~~  345 (351)
                      .  +.+++.+-...+.|...+..
T Consensus       217 ~--~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         217 Y--GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             E--TTEEEEEETTTTEEEEEETT
T ss_pred             E--CCEEEEEECCCCEEEEEECC
Confidence            5  33366665566777666654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=0.0015  Score=50.73  Aligned_cols=268  Identities=12%  Similarity=0.166  Sum_probs=162.5

Q ss_pred             CcceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCC
Q 018697           27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN  106 (351)
Q Consensus        27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~  106 (351)
                      ++.++++-....++.+++.++++...+....  +-.    .--+.-.+|..+.|+.-     ...+++++|++       
T Consensus        30 ESDkyicVRe~~~~~~~VvIidl~n~~~~~R--rpi----~AdsAIMhP~~~IiALr-----ag~~LQiFnle-------   91 (327)
T d1utca2          30 ESDKFICIREKVGEQAQVVIIDMNDPSNPIR--RPI----SADSAIMNPASKVIALK-----AGKTLQIFNIE-------   91 (327)
T ss_dssp             SSSSEEEEEEEETTEEEEEEEETTSTTSCEE--EEC----CCSEEEECSSSSEEEEE-----ETTEEEEEETT-------
T ss_pred             ecCCEEEEEeccCCCceEEEEECCCCCccee--ccc----chhhhhcCCCCcEEEEe-----cCCeEEEEehh-------
Confidence            4556666555567778899999887654332  111    22244467877655553     24589999998       


Q ss_pred             CCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEe
Q 018697          107 SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA  186 (351)
Q Consensus       107 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  186 (351)
                        ..+.++.+.- ..+|.-=.|-.+.. +.++  .+..|+-|+++......+.+..+..-....|..-..+++.++++..
T Consensus        92 --tK~klks~~~-~e~VvfWkWis~~~-L~lV--T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~  165 (327)
T d1utca2          92 --MKSKMKAHTM-TDDVTFWKWISLNT-VALV--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  165 (327)
T ss_dssp             --TTEEEEEEEC-SSCCCEEEESSSSE-EEEE--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred             --HhhhhceEEc-CCCcEEEEecCCCE-EEEE--cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEE
Confidence              4455555533 44666667877655 2333  3568999999765555555544422223467777889999987765


Q ss_pred             e---c----CCeEEEEEcccCCcCceeecce---eEEEEcC--CCCCcEEEEec---CCCeEEEEecccCCc---c--ee
Q 018697          187 T---C----ESSVQFWDLRSMGKTNSIEHAH---VRNVDYD--TKKKHLLVTAA---DESGIHLWDLRMLKA---P--IQ  246 (351)
Q Consensus       187 ~---~----d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~--~~~~~~l~~~~---~dg~i~i~d~~~~~~---~--~~  246 (351)
                      +   .    .|.+.+|..+.+ ..+.++ +|   ...+.+.  +....+++.+.   ..+.+++.++.....   +  .+
T Consensus       166 GI~~~~~~i~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk  243 (327)
T d1utca2         166 GISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  243 (327)
T ss_dssp             EEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCE
T ss_pred             eEecCCCceeEEEEEEEeccC-cCcccc-ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcce
Confidence            4   2    367788887753 233333 66   2223222  22222443332   336899999875321   1  11


Q ss_pred             Eee------CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEE
Q 018697          247 ELP------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL  320 (351)
Q Consensus       247 ~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (351)
                      ...      ...+-..++..++.. .+++.-+.-|.|++||+++                   +.++..-+-..+.|..-
T Consensus       244 ~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleT-------------------gt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         244 AVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLET-------------------GTCIYMNRISGETIFVT  303 (327)
T ss_dssp             EEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTT-------------------CCEEEEEECCSSCEEEE
T ss_pred             eEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEccc-------------------ccEEEEeecCCCceEEe
Confidence            111      112344567778777 7888999999999999999                   88887776666677655


Q ss_pred             EeCCCCCceEEEeeeCCeEEE
Q 018697          321 AWSSREPWIFASLSYDGRVVV  341 (351)
Q Consensus       321 ~~~~~~~~~l~s~~~dg~v~v  341 (351)
                      +-+.+.. =+++...+|.|.-
T Consensus       304 a~~~~~~-Gi~~VNr~GqVl~  323 (327)
T d1utca2         304 APHEATA-GIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTTT-EEEEEETTSEEEE
T ss_pred             ccCCCCc-eEEEECCCCeEEE
Confidence            5555444 2445556776653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=0.0019  Score=50.23  Aligned_cols=221  Identities=12%  Similarity=0.037  Sum_probs=131.8

Q ss_pred             CEEEEEEeCCCCCe--EEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeecc
Q 018697           42 NEVHLLRLSSGGTE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH  119 (351)
Q Consensus        42 ~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  119 (351)
                      +.|.-+.++.....  .....+..+...+..++|.+.++.++-+   ...++.|+..++.         .......+...
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iyws---d~~~~~I~~~~l~---------g~~~~~v~~~~   77 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT---DISEPSIGRASLH---------GGEPTTIIRQD   77 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE---ETTTTEEEEEESS---------SCCCEEEECTT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEE---ECCCCeEEEEEcc---------cCCcEEEEEec
Confidence            56666666543211  1112223344567789999888888765   3566778888776         22222223333


Q ss_pred             ccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC---CeEEEEE
Q 018697          120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD  196 (351)
Q Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd  196 (351)
                      ...+.++++..-+..++.+-...+.|.+.+++.... ..+.. .   ....+.+++++|...+++.....   ..|.--+
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~-~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFD-T---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-S---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEec-c---cccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            356788888876665445556678999999884322 22221 1   12367899999988887765422   2344445


Q ss_pred             cccCCcCceeecce---eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeC
Q 018697          197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT  273 (351)
Q Consensus       197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  273 (351)
                      +..... ..+....   +..+++++.++.++.+-...+.|...|+.. ......+.+... ..+|++. .+ .+..+-..
T Consensus       153 ~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~~~~-P~~lav~-~~-~lYwtd~~  227 (263)
T d1npea_         153 MDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY-PFAVTSY-GK-NLYYTDWK  227 (263)
T ss_dssp             TTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS-EEEEEEE-TT-EEEEEETT
T ss_pred             CCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-CCeEEEECCCCC-cEEEEEE-CC-EEEEEECC
Confidence            543332 2232122   789999888775556656778999999874 322233343333 3567775 33 55566566


Q ss_pred             CCeEEEEEcCC
Q 018697          274 DSTVNLWLVST  284 (351)
Q Consensus       274 dg~i~iwd~~~  284 (351)
                      .+.|...|...
T Consensus       228 ~~~I~~~~~~~  238 (263)
T d1npea_         228 TNSVIAMDLAI  238 (263)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            77888888876

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.0028  Score=49.36  Aligned_cols=182  Identities=12%  Similarity=0.016  Sum_probs=107.8

Q ss_pred             cceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCccc
Q 018697           90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH  169 (351)
Q Consensus        90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  169 (351)
                      ...|+..++..         .. ...+......+.+++|.+..+.++.+-...+.|.-.+++............ .....
T Consensus         9 ~~~I~~~~l~~---------~~-~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~   77 (266)
T d1ijqa1           9 RHEVRKMTLDR---------SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQ   77 (266)
T ss_dssp             BSSEEEEETTS---------CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCS
T ss_pred             CCeEEEEECCC---------Cc-ceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-eCCCC
Confidence            34587788762         12 122223445677899998888644444556778777775322111111100 01122


Q ss_pred             ceeeeEECCCCCcEEEee-cCCeEEEEEcccCCcCceeecc-e-eEEEEcCCCCCcEEEEec-CCCeEEEEecccCCcce
Q 018697          170 YLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKAPI  245 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~  245 (351)
                      .+.++++.+.+..|+.+. ..+.|.+.++............ . +..++++|...+++.+.. ..+.|...++..  ...
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--s~~  155 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDI  155 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--Cce
Confidence            567788887777777664 5678999998865543333322 2 889999987764555532 345677777653  333


Q ss_pred             eEee-CCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCC
Q 018697          246 QELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST  284 (351)
Q Consensus       246 ~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  284 (351)
                      ..+. ..-...+.+++++.++++..+-...+.|...++..
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            3333 33356789999988745555656678888888864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.0065  Score=47.17  Aligned_cols=224  Identities=8%  Similarity=-0.055  Sum_probs=130.6

Q ss_pred             CCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccc
Q 018697           41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV  120 (351)
Q Consensus        41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  120 (351)
                      .+.|+.+.++...-..    +......+..+.|.+..+.|.-+   ....+.|..-++.....     .......+....
T Consensus         9 ~~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~lYw~---D~~~~~I~~~~l~~~~~-----~~~~~~~~~~~~   76 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHG-----VSSYDTVISRDI   76 (266)
T ss_dssp             BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC-------------CEEEECSSC
T ss_pred             CCeEEEEECCCCccee----eeCCCCceEEEEEEeCCCEEEEE---ECCCCEEEEEEecCCCC-----CcceEEEEeCCC
Confidence            3457767776533222    23345567789999988888765   34556676666541100     011112222333


Q ss_pred             cceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--cCCeEEEEEcc
Q 018697          121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLR  198 (351)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~  198 (351)
                      ..+..+++.+.+..++.+-...+.|.+.+++.... ..... .   ......+++.+|...+|+...  ..+.|.-.++.
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~-~---~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEE-C---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEc-C---CCCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence            45678888877776555556678999999984322 12221 1   123578899999777777654  34567666665


Q ss_pred             cCCcCceeecc-e-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCC--CCceeEEEecCCCCCeEEEeeCC
Q 018697          199 SMGKTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFILSAGTD  274 (351)
Q Consensus       199 ~~~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d  274 (351)
                      ........... . +..+++++.+..++.+-...+.|...++.. ..........  .....++++.. + .++.+-..+
T Consensus       152 Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~~p~~lav~~-~-~ly~td~~~  228 (266)
T d1ijqa1         152 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIIN  228 (266)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTT
T ss_pred             CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCcccccEEEEEEC-C-EEEEEECCC
Confidence            43332222211 1 889999988775666667778999999874 3222222222  23345677663 3 555565667


Q ss_pred             CeEEEEEcCC
Q 018697          275 STVNLWLVST  284 (351)
Q Consensus       275 g~i~iwd~~~  284 (351)
                      +.|...+...
T Consensus       229 ~~I~~~~~~~  238 (266)
T d1ijqa1         229 EAIFSANRLT  238 (266)
T ss_dssp             TEEEEEETTT
T ss_pred             CeEEEEECCC
Confidence            7777777665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.002  Score=52.77  Aligned_cols=203  Identities=13%  Similarity=0.059  Sum_probs=113.0

Q ss_pred             CCCCCcEEEEecCCcEEEEEcCCCCCCcccccccccCcccceeeeEEC--CCCCcEEEeecC------------------
Q 018697          130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--PHDVNAVAATCE------------------  189 (351)
Q Consensus       130 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d------------------  189 (351)
                      +||+++++.-..+..|.+-|+++.+. .++.....   ...+..+...  |+..+++..+..                  
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt-~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cceeEEEEEcCCCceEEEEECcceee-eEEEecCC---CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            47887555557789999999986432 22222211   1134445443  445566665542                  


Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCC--C------------eE---------------------
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--S------------GI---------------------  233 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g------------~i---------------------  233 (351)
                      +.+.++|..+.+....+..+. ...++++++|++.++++.+.  +            .+                     
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             eEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            235678888777666665444 78899999999555544321  1            13                     


Q ss_pred             --EEEecccC-C-cceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018697          234 --HLWDLRML-K-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (351)
Q Consensus       234 --~i~d~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                        .+.|.+.. + ..+..+. -......+..+|||..+++++..+.++.++|++.....  .   ..  ...........
T Consensus       253 gV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~--~---~~--~~~~~~~~~~e  324 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--F---YE--NADPRSAVVAE  324 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--H---HS--CC-GGGGEEEC
T ss_pred             CceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh--h---cc--cCCccccEEee
Confidence              33343321 0 1111222 12334678999999444455556999999999752000  0   00  00000111111


Q ss_pred             eccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       310 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                      .. ..-....-+|...|. ...|---|..|.-|++..
T Consensus       325 ~e-lglgPLht~fd~~g~-aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         325 PE-LGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CB-CCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred             cc-cCcCccccccCCCce-EEEEeeccceEEEEecch
Confidence            11 122345678888775 566666899999999854

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.37  E-value=0.025  Score=46.14  Aligned_cols=78  Identities=10%  Similarity=-0.040  Sum_probs=44.7

Q ss_pred             CCcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecC-
Q 018697           64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-  142 (351)
Q Consensus        64 h~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d-  142 (351)
                      |.......++.+++..++..   +.....+.+||...       ........+.... .-..++..++++ +++.++.+ 
T Consensus        74 ~~~~~~~~~~~~~g~i~v~G---g~~~~~~~~yd~~~-------~~w~~~~~~~~~r-~~~~~~~~~dG~-v~v~GG~~~  141 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTG---GNDAKKTSLYDSSS-------DSWIPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWS  141 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEEC---SSSTTCEEEEEGGG-------TEEEECCCCSSCC-SSCEEEECTTSC-EEEECCCCC
T ss_pred             cccceeEEEEecCCcEEEee---cCCCcceeEecCcc-------Ccccccccccccc-cccceeeecCCc-eeeeccccc
Confidence            33334456788888776663   23346899999873       2333333332221 223456677887 35555421 


Q ss_pred             -----CcEEEEEcCCC
Q 018697          143 -----ENIFLWSLDCS  153 (351)
Q Consensus       143 -----~~v~iwd~~~~  153 (351)
                           ..+.+||..+.
T Consensus       142 ~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         142 GGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SSSCCCCEEEEETTTT
T ss_pred             cccccceeeeecCCCC
Confidence                 46889998864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.023  Score=43.99  Aligned_cols=235  Identities=11%  Similarity=0.140  Sum_probs=133.3

Q ss_pred             CceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEecCCcEEEEEcCCCCCCc
Q 018697           78 QRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA  157 (351)
Q Consensus        78 ~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~  157 (351)
                      ...++.....+....|.|-|+..        ...+.+.--..+    +.-.+|..+  +++--...++.++|+++..+..
T Consensus        32 DkyicVRe~~~~~~~VvIidl~n--------~~~~~Rrpi~Ad----sAIMhP~~~--IiALrag~~LQiFnletK~klk   97 (327)
T d1utca2          32 DKFICIREKVGEQAQVVIIDMND--------PSNPIRRPISAD----SAIMNPASK--VIALKAGKTLQIFNIEMKSKMK   97 (327)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTS--------TTSCEEEECCCS----EEEECSSSS--EEEEEETTEEEEEETTTTEEEE
T ss_pred             CCEEEEEeccCCCceEEEEECCC--------CCcceecccchh----hhhcCCCCc--EEEEecCCeEEEEehhHhhhhc
Confidence            34445443334556788888872        112222211222    334578777  5554336789999999755444


Q ss_pred             ccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCC-cCceeecce------eEEEEcCCCCCcEEEEec--
Q 018697          158 QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH------VRNVDYDTKKKHLLVTAA--  228 (351)
Q Consensus       158 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~------v~~~~~~~~~~~~l~~~~--  228 (351)
                      .....+      +|.--.|-.+ +.|+..+ +..|+-|+++... +...+....      |..-..+++.+.++++|-  
T Consensus        98 s~~~~e------~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~  169 (327)
T d1utca2          98 AHTMTD------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  169 (327)
T ss_dssp             EEECSS------CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred             eEEcCC------CcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEec
Confidence            433322      6666677643 4454444 5689999996533 333333211      778888999986555543  


Q ss_pred             C----CCeEEEEecccCCcceeEeeCCCCceeEEEecCCC--CCeEEEee---CCCeEEEEEcCCCCCCCCCCcccccCC
Q 018697          229 D----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--DGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESP  299 (351)
Q Consensus       229 ~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~  299 (351)
                      .    .|.+.+|..+.  +.-+.+++|...-..+.+.-..  ..+++-+.   ..+.++|-++........+.       
T Consensus       170 ~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f-------  240 (327)
T d1utca2         170 QQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------  240 (327)
T ss_dssp             ETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC-------
T ss_pred             CCCceeEEEEEEEecc--CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC-------
Confidence            2    36789999874  4567788887665555543211  12333332   23578888886521110000       


Q ss_pred             cccccccceeec---cccceEEEEEeCCCCCceEEEeeeCCeEEEeecCcc
Q 018697          300 NQRANSLLNSYS---DYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPF  347 (351)
Q Consensus       300 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  347 (351)
                      +   .+.+..+-   ...+-..++..++... ++..-+.-|.|.+||+++-
T Consensus       241 ~---kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         241 P---KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             C---CEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred             c---ceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccc
Confidence            0   11111111   1123345677888766 7888888899999999763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.02  E-value=0.055  Score=43.36  Aligned_cols=202  Identities=11%  Similarity=0.092  Sum_probs=109.4

Q ss_pred             cceEEEeeeeeCCCCEEEEEEeCCCCCeEEEEeeecCCcceeeeeeC------CCCCceEEEEeecCCc--ceEEEEEcc
Q 018697           28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC------PFDQRIFSTVFSTGES--YGAAIWQIP   99 (351)
Q Consensus        28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~------~~~~~l~~~~~~~~~d--~~i~vw~~~   99 (351)
                      ...+++||-   ..+-++++++..  +.+..  +  ..+.++.+..-      .....++++.  .-.+  ..|.+|.+.
T Consensus        39 ~~SlI~gTd---K~~Gl~vYdL~G--~~l~~--~--~~Gr~NNVDvr~~~~l~~~~~di~vas--nR~~~~~~l~~~~id  107 (353)
T d1h6la_          39 QNSKLITTN---KKSGLAVYSLEG--KMLHS--Y--HTGKLNNVDIRYDFPLNGKKVDIAAAS--NRSEGKNTIEIYAID  107 (353)
T ss_dssp             GGCEEEEEE---TTSCCEEEETTC--CEEEE--C--CSSCEEEEEEEEEEEETTEEEEEEEEE--ECCTTTCEEEEEEEE
T ss_pred             CccEEEEEc---CcCCEEEEcCCC--cEEEe--c--ccCCcCccccccccccCCcceEEEEEe--CCcCcceeEEEEEec
Confidence            567888873   345588898853  33321  1  23455555432      2222344442  1222  367888876


Q ss_pred             cccCCCCCCcceeeeeeec-------cccceeEEEe--cCCCCC-cEEEEecCCcEEEEEcCCCCC--CcccccccccCc
Q 018697          100 ELYGQLNSPQLERIAALDA-------HVGKINCVLW--WSSGRH-DKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSGM  167 (351)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~--~~~~~~-~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~  167 (351)
                      ..        ...+..+..       -...+..+|+  ++.... .++++..+|.+..|.+.....  ......... ..
T Consensus       108 ~~--------~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~  178 (353)
T d1h6la_         108 GK--------NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KM  178 (353)
T ss_dssp             TT--------TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-EC
T ss_pred             Cc--------ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CC
Confidence            21        111222211       1224666666  665432 244557789999888753221  111111111 11


Q ss_pred             ccceeeeEECCCCCcEEEeecCCeEEEEEcccC--CcCcee---ecce----eEEEEcC--CCC-CcEEEEecCCCeEEE
Q 018697          168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM--GKTNSI---EHAH----VRNVDYD--TKK-KHLLVTAADESGIHL  235 (351)
Q Consensus       168 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~---~~~~----v~~~~~~--~~~-~~~l~~~~~dg~i~i  235 (351)
                      ...+.++.+......|+.+-.+..|..++....  .....+   ...+    +..|+.-  +++ .+++++...+.+..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            236888999998899999988777766665422  111111   1112    6666543  233 367888778899999


Q ss_pred             EecccCCcceeEee
Q 018697          236 WDLRMLKAPIQELP  249 (351)
Q Consensus       236 ~d~~~~~~~~~~~~  249 (351)
                      ||.+.+...+..|.
T Consensus       259 ydr~~~~~~~g~F~  272 (353)
T d1h6la_         259 YERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTCCEEEEEE
T ss_pred             EecCCCccccceEE
Confidence            99887555565554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.01  E-value=0.056  Score=43.29  Aligned_cols=155  Identities=9%  Similarity=0.068  Sum_probs=88.3

Q ss_pred             eeeeEECCCCCcEEEeec------------CCeEEEEEcccCCcCc-e--eecc-------eeEEEE--cCCCCCcEEEE
Q 018697          171 LSGGAWDPHDVNAVAATC------------ESSVQFWDLRSMGKTN-S--IEHA-------HVRNVD--YDTKKKHLLVT  226 (351)
Q Consensus       171 v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~~-~--~~~~-------~v~~~~--~~~~~~~~l~~  226 (351)
                      ..+++..|++..+++++.            .|.|.++|+.+..... .  +...       +...+.  -.+++...|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            445666777665555431            4889999987654321 1  1100       023333  25566644544


Q ss_pred             ec---CCCeEEEEecccCCccee---Eee-CCCCceeEEEecCCCCCeEEEeeC---------------CCeEEEEEcCC
Q 018697          227 AA---DESGIHLWDLRMLKAPIQ---ELP-GHTHWTWAVCCNPEYDGFILSAGT---------------DSTVNLWLVST  284 (351)
Q Consensus       227 ~~---~dg~i~i~d~~~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~  284 (351)
                      ..   ...+|.+|++......+.   ++. ......+.+....++ .+++|-..               -+...+|....
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            32   456899999875333222   121 122456888888888 77777321               11223333332


Q ss_pred             CCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEeeeCCeEEEeecCc
Q 018697          285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKP  346 (351)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  346 (351)
                                         .. .......-...++|+++|+++.++++-+..+.|++|++..
T Consensus       196 -------------------~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         196 -------------------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             -------------------SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             -------------------Cc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                               11 1222222234789999999997778888899999999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.79  E-value=0.11  Score=43.15  Aligned_cols=248  Identities=11%  Similarity=0.115  Sum_probs=127.9

Q ss_pred             cceeeeeeCCCCCceEEEEeecCC-cceEEEEEcccccCCCCCCcceeee-eeeccccceeEEEecCCCCCcEEEEec--
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGE-SYGAAIWQIPELYGQLNSPQLERIA-ALDAHVGKINCVLWWSSGRHDKLVSID--  141 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~--  141 (351)
                      -.+...++||++++++.+...+|. ...++++|+.         +++.+. .+.  ......++|.+++..++.+.-.  
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~---------tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD---------GAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT---------TTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccC---------cceecccccc--cccccceEEcCCCCEEEEEEeccc
Confidence            344566789999998877644444 4579999998         444432 221  1123568899999964444311  


Q ss_pred             -------------CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeec---CCe--EEEEEcccCCcC
Q 018697          142 -------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESS--VQFWDLRSMGKT  203 (351)
Q Consensus       142 -------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~~  203 (351)
                                   ...|..+.+.+........... ......+..+..++++++++....   ...  +.+.|+......
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cCcccccccccCCcceEEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                         1257888887654333332222 111224566778899998775432   333  445555543211


Q ss_pred             c-------eeecce---eEEEEcCCCCCcEEEEec---CCCeEEEEecccCCc-ceeEee-CCCCceeEEEecCCCCCeE
Q 018697          204 N-------SIEHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA-PIQELP-GHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       204 ~-------~~~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l  268 (351)
                      .       .+....   ..-+. +..+. +++...   .++.|...++..+.. ....+- .+...+..-.+...+..++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVT-NEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEE-EETTE-EEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cccccceeEeecccccceEEEe-cCCce-eecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence            1       111111   22222 22333 333332   346777777765432 123333 3444454434444341344


Q ss_pred             EEeeCCC--eEEEEEcCCCCCCCCCCcccccCCcccccccceeeccccceEEEEEeCCCCCceEEEee---eCCeEEEee
Q 018697          269 LSAGTDS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS---YDGRVVVES  343 (351)
Q Consensus       269 ~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~v~vw~  343 (351)
                      +..-.++  .|++++...                   +............|..+...++...+.++-+   .=.++.-+|
T Consensus       351 l~~~~~~~~~l~v~~~~~-------------------~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~D  411 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLAT-------------------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (430)
T ss_dssp             EEEEETTEEEEEEEETTT-------------------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             EEEEcCCEeEEEEEECCC-------------------CcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEE
Confidence            4444555  578888876                   3333333333345666666665553443332   125677777


Q ss_pred             cCc
Q 018697          344 VKP  346 (351)
Q Consensus       344 ~~~  346 (351)
                      +.+
T Consensus       412 l~t  414 (430)
T d1qfma1         412 LTK  414 (430)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.56  E-value=0.13  Score=41.10  Aligned_cols=141  Identities=7%  Similarity=-0.036  Sum_probs=77.7

Q ss_pred             cCCCCCcEEEE---ecCCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEee--c-------------CC
Q 018697          129 WSSGRHDKLVS---IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--C-------------ES  190 (351)
Q Consensus       129 ~~~~~~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-------------d~  190 (351)
                      .+++...+++.   ....+|.+|++.....................+++++..++..+++-.  .             -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            45565334333   245678888887543322211111112233578888888887666621  1             12


Q ss_pred             eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEe--eCCCCceeEEEecCCCCCe
Q 018697          191 SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDGF  267 (351)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~  267 (351)
                      ...+|....++......... .+.++++|++++++++-+..+.|++|++...+. +...  ..-....-.+.+.+.+..+
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~g~l  265 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGDL  265 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCCCEE
Confidence            33444444433322222122 999999999997778888889999999975332 2221  1123445677787644144


Q ss_pred             EEE
Q 018697          268 ILS  270 (351)
Q Consensus       268 l~s  270 (351)
                      .+.
T Consensus       266 wva  268 (340)
T d1v04a_         266 WVG  268 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.39  E-value=0.17  Score=40.48  Aligned_cols=193  Identities=15%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             CCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeeeccccceeEEEec------CCCCCcEEEEec-C--CcE
Q 018697           75 PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW------SSGRHDKLVSID-E--ENI  145 (351)
Q Consensus        75 ~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~~~~~~~~-d--~~v  145 (351)
                      |+...++.+    ...+-|.+||+.          ++.+..+.  .+.+..|..-      .....+++++-. +  .+|
T Consensus        38 p~~SlI~gT----dK~~Gl~vYdL~----------G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l  101 (353)
T d1h6la_          38 PQNSKLITT----NKKSGLAVYSLE----------GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (353)
T ss_dssp             GGGCEEEEE----ETTSCCEEEETT----------CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEE
T ss_pred             cCccEEEEE----cCcCCEEEEcCC----------CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeE
Confidence            344455554    456669999986          45554443  2344444332      222222344422 2  368


Q ss_pred             EEEEcCCCCCCccccccc---ccCcccceeeeEE--CCCCC--cEEEeecCCeEEEEEcccCC-------cCceeecce-
Q 018697          146 FLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAW--DPHDV--NAVAATCESSVQFWDLRSMG-------KTNSIEHAH-  210 (351)
Q Consensus       146 ~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~--~~~~~--~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~-  210 (351)
                      .+|.+.............   ...-...++.+++  ++...  ++++...+|.+..|.+....       .++.+..+. 
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            888876322211111110   0011224777777  66543  34556678999988875321       233343333 


Q ss_pred             eEEEEcCCCCCcEEEEecCCCeEEEEecccCCc----ceeEeeC--CCCceeEEEec--CCCC-CeEEEeeCCCeEEEEE
Q 018697          211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA----PIQELPG--HTHWTWAVCCN--PEYD-GFILSAGTDSTVNLWL  281 (351)
Q Consensus       211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~--~~~~v~~~~~~--~~~~-~~l~s~~~dg~i~iwd  281 (351)
                      +..|++.+... .|+.+-++..|..++......    .+....+  ....+-.|+.-  +++. .+|+|.-.+++..+||
T Consensus       182 ~EGCVvDde~~-~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         182 TEGMAADDEYG-SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEEEEETTTT-EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cceEEEeCCCC-cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            88999998887 677788887777776642211    1111211  34566777653  3332 4455555688999999


Q ss_pred             cCC
Q 018697          282 VST  284 (351)
Q Consensus       282 ~~~  284 (351)
                      ...
T Consensus       261 r~~  263 (353)
T d1h6la_         261 RQG  263 (353)
T ss_dssp             SST
T ss_pred             cCC
Confidence            976

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.90  E-value=0.36  Score=39.82  Aligned_cols=113  Identities=11%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             ceeEEEecCCCCCcEEEEecC----CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC--------
Q 018697          122 KINCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------  189 (351)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------  189 (351)
                      .+..++++|+++.++++-+.+    ..++++|+.++......+...      ....++|.++++.|+....+        
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~------~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc------cccceEEcCCCCEEEEEEeccccCcccc
Confidence            345567899999644443443    368999999765433222211      23578999999988765422        


Q ss_pred             --------CeEEEEEcccCCcCce--eecc---e-eEEEEcCCCCCcEEEEecC--CC--eEEEEeccc
Q 018697          190 --------SSVQFWDLRSMGKTNS--IEHA---H-VRNVDYDTKKKHLLVTAAD--ES--GIHLWDLRM  240 (351)
Q Consensus       190 --------~~i~iwd~~~~~~~~~--~~~~---~-v~~~~~~~~~~~~l~~~~~--dg--~i~i~d~~~  240 (351)
                              ..|..+.+.+......  +...   . +..+..+++++++++....  +.  .+.+.|+..
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence                    3577777776543322  2211   1 6678889999966654332  33  345556554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.67  E-value=0.39  Score=38.58  Aligned_cols=111  Identities=10%  Similarity=0.043  Sum_probs=65.7

Q ss_pred             EEecCCCCCcEEEEecC-----C------cEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecC-CeEE
Q 018697          126 VLWWSSGRHDKLVSIDE-----E------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-SSVQ  193 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~d-----~------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~  193 (351)
                      .....+++ +++.++.+     +      .+.+||+.++.-......  ...+.....+.++.+++..++.|+.+ ..+.
T Consensus        25 a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          25 AIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--VTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--ECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC--CCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33445555 56666531     1      367999987543322111  11222234456788899888887644 6899


Q ss_pred             EEEcccCCcC--ceeecce-eEEEEcCCCCCcEEEEecCC------CeEEEEeccc
Q 018697          194 FWDLRSMGKT--NSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM  240 (351)
Q Consensus       194 iwd~~~~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~  240 (351)
                      +||..+..-.  ..+.... -...+..++++ +++.|+.+      ..+.+||..+
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence            9999876432  1222222 44667778888 67777642      3689999875

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.34  Score=41.76  Aligned_cols=80  Identities=9%  Similarity=0.018  Sum_probs=52.8

Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC-ceeEEEecCCCCCe
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGF  267 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  267 (351)
                      |.|.-+|+.+++.......+. +..-..+..+. ++++|+.||.++.+|.++ ++.+-+++.... .-.-+.|..+|.+|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCC-eEEEeCCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence            567788888888777776444 22111223455 777899999999999998 777877763221 11225667788666


Q ss_pred             EEEe
Q 018697          268 ILSA  271 (351)
Q Consensus       268 l~s~  271 (351)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.53  Score=37.89  Aligned_cols=182  Identities=10%  Similarity=0.055  Sum_probs=93.7

Q ss_pred             cceeeeeeCCCCCceEEEEeecCCcceEEEEEccccc----CCCCCCcceeeeeeeccccceeEEEecCCCCCcEEEEec
Q 018697           66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID  141 (351)
Q Consensus        66 ~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  141 (351)
                      ....-++.++....++++    +.+ .+.|-......    ........+....+    ..|..++|+.+.   +++ ..
T Consensus        37 ~~~~LLAVsn~~GLl~aa----~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d~---l~v-~~  103 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGDQ---VLV-ST  103 (381)
T ss_dssp             SCCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETTE---EEE-EE
T ss_pred             cccceEEEeCCCCEEEEE----CCC-EEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCCE---EEE-Ee
Confidence            345677888877677764    444 56677754321    11111122222222    358889997552   333 34


Q ss_pred             CCcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee------c-ceeEEE
Q 018697          142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE------H-AHVRNV  214 (351)
Q Consensus       142 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~-~~v~~~  214 (351)
                      ++.+..++...........     ....++.++.++|.  .++....++.+.++++..++......      . +.+.++
T Consensus       104 ~~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v  176 (381)
T d1xipa_         104 RNALYSLDLEELSEFRTVT-----SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAV  176 (381)
T ss_dssp             SSEEEEEESSSTTCEEEEE-----ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEE
T ss_pred             CCCEEEEEeeccccccccc-----cccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEE
Confidence            5678888877422211111     11236777888773  56666778999999998775322111      0 116677


Q ss_pred             EcCCCCCcEEEEecCCCeEEEE-ecccCCcceeEeeCCCCceeEEEecCCCCCeEEEe
Q 018697          215 DYDTKKKHLLVTAADESGIHLW-DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA  271 (351)
Q Consensus       215 ~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  271 (351)
                      +|++.+. .++++..++ ..+- ++.. ...+.........|.+|.|-.+. .+++.-
T Consensus       177 ~ws~kgk-q~v~~~g~~-~q~k~~i~~-~~~~~~p~~~~~~v~sI~WL~~~-~F~vvy  230 (381)
T d1xipa_         177 LLKDRSF-QSFAWRNGE-MEKQFEFSL-PSELEELPVEEYSPLSVTILSPQ-DFLAVF  230 (381)
T ss_dssp             EETTSCE-EEEEEETTE-EEEEEEECC-CHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             EEeCCcE-EEEEeCCCc-eeeccCCCC-ccccCCCcCCCcceeEEEEecCc-eEEEEE
Confidence            7777776 445453221 1111 1111 10111111234467888887665 455433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.97  E-value=0.092  Score=45.36  Aligned_cols=82  Identities=11%  Similarity=-0.050  Sum_probs=49.9

Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCC-CceeEEEecCCCCCe
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGF  267 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  267 (351)
                      |.|.-+|+++++.+.+..... ..+-.+.-.+. ++++|+.|+.++.+|.++ ++.+-++.... ..-.-+.|..+|+.|
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKD-GKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCC-EEEEECCCCeEEEEECCC-CcEEEEEECCCCceecceEEEECCEEE
Confidence            356667777777666655333 11111111343 677899999999999998 66777765321 222235566688677


Q ss_pred             EEEeeC
Q 018697          268 ILSAGT  273 (351)
Q Consensus       268 l~s~~~  273 (351)
                      +++...
T Consensus       522 i~v~~g  527 (571)
T d2ad6a1         522 IGSMYG  527 (571)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            765443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.84  E-value=1  Score=38.56  Aligned_cols=55  Identities=11%  Similarity=-0.023  Sum_probs=34.7

Q ss_pred             CeEEEEEcccCCcCceeecce-------------eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcce
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-------------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      ..+.-.|+++++.+..++..+             ...+.........++.++.+|.+.++|..+ ++++
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~t-G~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCC-CcEe
Confidence            467778888888776665322             223333322223567788899999999876 5444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.48  E-value=1.1  Score=37.12  Aligned_cols=50  Identities=6%  Similarity=0.094  Sum_probs=34.8

Q ss_pred             ceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceee--------cce--eEEEEcCCC
Q 018697          170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------HAH--VRNVDYDTK  219 (351)
Q Consensus       170 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~--v~~~~~~~~  219 (351)
                      ..++|+|.|+++.+++--..|.|++++..+++......        .++  ...|+++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            67799999999866554457999999877765322111        112  789999986

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.42  E-value=1  Score=38.63  Aligned_cols=82  Identities=10%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             CCeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCccccccccee
Q 018697          230 ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS  309 (351)
Q Consensus       230 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                      .|.|.-+|+.+ ++.+-+...+ .++..-..+-.+ .++++|+.||.++.+|.++                   ++.+..
T Consensus       465 ~G~l~AiD~~T-G~i~W~~~~~-~p~~~g~lstag-glVF~Gt~dg~l~A~Da~T-------------------Ge~LW~  522 (582)
T d1flga_         465 VGSLRAMDPVS-GKVVWEHKEH-LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS-------------------GKELWK  522 (582)
T ss_dssp             SEEEEEECTTT-CCEEEEEEES-SCCCSCCEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEE
T ss_pred             CCeEEEEcCCC-CcEEeecCCC-CCCccceeEEcC-CeEEEeCCCCeEEEEECCC-------------------CcEeEE
Confidence            36777888887 5555554422 222222233445 6778899999999999999                   898887


Q ss_pred             eccccce-EEEEEeCCCCCceEEEe
Q 018697          310 YSDYEDS-VYGLAWSSREPWIFASL  333 (351)
Q Consensus       310 ~~~~~~~-v~~~~~~~~~~~~l~s~  333 (351)
                      ++-.... -.-+.+..+|+.+++..
T Consensus       523 ~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         523 FQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCccccCEEEEECCEEEEEEE
Confidence            7532211 11256667887565543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.38  E-value=0.31  Score=41.83  Aligned_cols=81  Identities=6%  Similarity=0.095  Sum_probs=46.1

Q ss_pred             CeEEEEecccCCcceeEeeCCCCceeEEEecCCCCCeEEEeeCCCeEEEEEcCCCCCCCCCCcccccCCcccccccceee
Q 018697          231 SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY  310 (351)
Q Consensus       231 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (351)
                      |.|.-+|+.+ ++.+-+... ..+...-.+.-.+ .+++.|+.||.++.+|.++                   ++.+..+
T Consensus       438 G~l~A~D~~t-Gk~~W~~~~-~~~~~gg~l~Tag-glVF~G~~dg~l~A~Da~t-------------------Ge~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVK-QKAAWKVPY-PTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADK-------------------GEALWQF  495 (560)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTT-------------------CCEEEEE
T ss_pred             cceEEEeCCC-CeEeeeccC-CCCCCCceeEECC-CEEEEECCCCcEEEEECCC-------------------CcEeEEE
Confidence            3456666665 443333321 1111111122234 5777899999999999999                   8888777


Q ss_pred             ccccceEE--EEEeCCCCCceEEEee
Q 018697          311 SDYEDSVY--GLAWSSREPWIFASLS  334 (351)
Q Consensus       311 ~~~~~~v~--~~~~~~~~~~~l~s~~  334 (351)
                      .-... +.  -+.+..+|+.+|+..+
T Consensus       496 ~l~~~-~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         496 EAQSG-IVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             ECSSC-CCSCCEEEEETTEEEEEEEE
T ss_pred             ECCCC-ccccCEEEEECCEEEEEEEe
Confidence            54221 11  1455567875665443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.95  E-value=1.6  Score=37.18  Aligned_cols=82  Identities=6%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             CeEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCC-ceeEEEecCCCCCe
Q 018697          190 SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGF  267 (351)
Q Consensus       190 ~~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  267 (351)
                      |.|.-||+.+++.+.....+. ...-.+.-.+. +++.|+.||.++.||.++ ++.+-++..... .-.-+.+..+|+.|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCC-EEEEECCCCcEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence            567788988888777766443 22111222344 777899999999999998 777777763221 11224556678667


Q ss_pred             EEEeeC
Q 018697          268 ILSAGT  273 (351)
Q Consensus       268 l~s~~~  273 (351)
                      |+..+.
T Consensus       516 v~v~aG  521 (560)
T d1kv9a2         516 VAIMAG  521 (560)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            665443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.74  E-value=0.2  Score=43.22  Aligned_cols=80  Identities=13%  Similarity=0.104  Sum_probs=46.2

Q ss_pred             eEEEEEcccCCcCceeecce-eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEeeCCCCce-eEEEecCCCCCeE
Q 018697          191 SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT-WAVCCNPEYDGFI  268 (351)
Q Consensus       191 ~i~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l  268 (351)
                      .+.-||+.+++.+....... ...=...-.+. ++++|+.||.++.+|.++ ++.+-++....... .-+.|..+|+.|+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCC-EEEEECCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEEE
Confidence            45556666666555554322 11111112454 777899999999999998 77787776322111 1244556775566


Q ss_pred             EEee
Q 018697          269 LSAG  272 (351)
Q Consensus       269 ~s~~  272 (351)
                      +..+
T Consensus       536 ~v~~  539 (573)
T d1kb0a2         536 SVAV  539 (573)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.38  E-value=2.1  Score=36.73  Aligned_cols=71  Identities=15%  Similarity=0.032  Sum_probs=43.3

Q ss_pred             eEECCCCCcEEEeec----------------CCeEEEEEcccCCcCceeecce-----------eEEEE-cCCCCC--cE
Q 018697          174 GAWDPHDVNAVAATC----------------ESSVQFWDLRSMGKTNSIEHAH-----------VRNVD-YDTKKK--HL  223 (351)
Q Consensus       174 ~~~~~~~~~l~~~~~----------------d~~i~iwd~~~~~~~~~~~~~~-----------v~~~~-~~~~~~--~~  223 (351)
                      +++.+....++.+..                ...|.-.|+++++....++..+           +.-+. -..+++  ..
T Consensus       246 ~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~  325 (596)
T d1w6sa_         246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKL  325 (596)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEE
T ss_pred             cccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccc
Confidence            455666666655532                2457778999998877666332           11111 122332  35


Q ss_pred             EEEecCCCeEEEEecccCCcce
Q 018697          224 LVTAADESGIHLWDLRMLKAPI  245 (351)
Q Consensus       224 l~~~~~dg~i~i~d~~~~~~~~  245 (351)
                      ++....+|.+.++|..+ ++++
T Consensus       326 v~~~~k~G~~~vlDr~t-G~~i  346 (596)
T d1w6sa_         326 LTHPDRNGIVYTLDRTD-GALV  346 (596)
T ss_dssp             EEEECTTSEEEEEETTT-CCEE
T ss_pred             eeccccccceeeecCCC-Ccee
Confidence            77788899999999876 5444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.95  E-value=1.7  Score=37.07  Aligned_cols=48  Identities=6%  Similarity=0.022  Sum_probs=34.6

Q ss_pred             CCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCCCCcEEEE
Q 018697          179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVT  226 (351)
Q Consensus       179 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~  226 (351)
                      .+..+++++.|+.++.+|.++|+.+..+..+.   -.-+.|..+|+.+++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            46678888899999999999999998887544   1124444577644443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.93  E-value=4.3  Score=33.26  Aligned_cols=56  Identities=7%  Similarity=-0.065  Sum_probs=36.0

Q ss_pred             CcceeeeeeCCCCCceEEEEeecCCcceEEEEEcccccCCCCCCcceeeeeee------ccccceeEEEecCC
Q 018697           65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD------AHVGKINCVLWWSS  131 (351)
Q Consensus        65 ~~~v~~i~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~  131 (351)
                      -...++|+|.|+++.+++-    -..|.|++++...       ...+.+..+.      .-......|+++|+
T Consensus        26 L~~P~~la~~pdg~llVte----r~~G~i~~v~~~~-------g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTE----RATGKILRVNPES-------GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEE----TTTCEEEEECTTT-------CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEE----ecCCEEEEEECCC-------CcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4577899999999877763    2368888887651       1223333221      12356788999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.56  E-value=0.22  Score=43.13  Aligned_cols=78  Identities=9%  Similarity=0.001  Sum_probs=48.0

Q ss_pred             CcEEEEEcCCCCCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEEEcccCCcCceeecce---eEEEEcCCC
Q 018697          143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK  219 (351)
Q Consensus       143 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---v~~~~~~~~  219 (351)
                      |.|.-||+.+++...+.....      +..+-..+..+..+++++.||.++-+|.++|+.+.++..+.   -.-+.|..+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~------~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~d  526 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF------AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHK  526 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ceEEEEeCCCCceecccCCCC------CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEEC
Confidence            456666766655443322211      22222223346778889999999999999999998887544   223444457


Q ss_pred             CCcEEEE
Q 018697          220 KKHLLVT  226 (351)
Q Consensus       220 ~~~~l~~  226 (351)
                      |+.+++.
T Consensus       527 GkQYvav  533 (596)
T d1w6sa_         527 GTQYVAI  533 (596)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEE
Confidence            7655554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.44  E-value=5.8  Score=31.59  Aligned_cols=138  Identities=10%  Similarity=0.002  Sum_probs=74.9

Q ss_pred             eeEEEecCCCCCcEEEEecCCcEEEEEcCCC-------CCCcccccccccCcccceeeeEECCCCCcEEEeecCCeEEEE
Q 018697          123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCS-------NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW  195 (351)
Q Consensus       123 v~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  195 (351)
                      ..-++.++... ++++++.+ .+.|.....-       ..........   ....|..++|+.+  .+++. .++.+..+
T Consensus        39 ~~LLAVsn~~G-Ll~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          39 LQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             CBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cceEEEeCCCC-EEEEECCC-EEEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            44566777655 35555544 5677664310       0000111111   1125788888743  44443 45667777


Q ss_pred             EcccCCcCceeecce--eEEEEcCCCCCcEEEEecCCCeEEEEecccCCcceeEee-----CCCCceeEEEecCCCCCeE
Q 018697          196 DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-----GHTHWTWAVCCNPEYDGFI  268 (351)
Q Consensus       196 d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l  268 (351)
                      +..+-..........  +..+.++|..   ++....++.+.++++...+ ......     .-...+.+++|++.| ..+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~-~~~~~~~v~~~~~~~~~~~v~ws~kg-kq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKS-TKQLAQNVTSFDVTNSQLAVLLKDRS-FQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCC-EEEEEESEEEEEECSSEEEEEETTSC-EEE
T ss_pred             EeeccccccccccccccccceecCCce---eEEEecCCCEEEEEeccCc-cccccCCcceEEecCCceEEEEeCCc-EEE
Confidence            766533322222111  7788888753   5556678899999998632 211111     123557788888877 666


Q ss_pred             EEeeC
Q 018697          269 LSAGT  273 (351)
Q Consensus       269 ~s~~~  273 (351)
                      +++..
T Consensus       186 v~~~g  190 (381)
T d1xipa_         186 FAWRN  190 (381)
T ss_dssp             EEEET
T ss_pred             EEeCC
Confidence            66643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.72  E-value=7.6  Score=28.89  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=13.8

Q ss_pred             CCCceEEEeeeCC-----eEEEeecCc
Q 018697          325 REPWIFASLSYDG-----RVVVESVKP  346 (351)
Q Consensus       325 ~~~~~l~s~~~dg-----~v~vw~~~~  346 (351)
                      +++ +++.|+.++     .|.+||+..
T Consensus       242 ~~~-l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         242 QGR-IYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCE-EEEEecCCCCeecceEEEEECCC
Confidence            455 777776544     377888764