Citrus Sinensis ID: 018705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Secondary Structure (PSIPRED)
ccccEEHHHHHHHHHHcEEccccccccccccccccccccccccEEEcccccccccEEEEEcccccEEEEEEccEEEEEEEcccEEEEEEEccccccccEEEcccccEEEEEccccEEEEEccccEEEEEcccccccEEEcccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEcccccccEEEEcccccEEEEEEccEEEEEEEccccccEEEEEccccccccEEEcccccEEEEEEccccccHHHHHccHHHHHHHHHccccEEEEccccccccEEEEEEEccccEEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccccEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEcccccEEEEEccccEEEEcccccEEEEEcEEEccccEEccccEEEEEcccccccHHHHHHHHHHcccccEEEEEcccccEEEEEEcccEccccEEEcccccEEEEEHHHHHHHHcccccccEHHHHcccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHccHHHcccccccccccEEEEEEccccccEEEEEEcccccEEEEEEEEEEEccEEEEEEccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKesssmkgltklgegcvnhpedvsVVVSKGALYTATRDGWVKYFILHNETlvnwkhidsqsllgltttkdggvilcdnekgllKVTEEGveaivpdasftndviaasdGTLYFTVAstkytptdfykdmaegkpygqlrkydpklkettvlhegfyfangialskneDFVVVCESWKRYWLKGDRAGILDAFIenlpggpdninlapdgsfWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLlpmgsdagarvvkvdgndgkiirdfndpdatYISFVTSAAEFDGNLYLASLQsnfigilpldgpepqlati
Flexible Loop (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVAStkytptdfykdmaegkpygqlrkyDPKLKETTVLHEGFYFAngialskneDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Low Complexity Region (SEG)
MAPKSFLLACLLAFTVQIFFslsvsslasllsiskesssMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Disordered region (IsUnstruct)
*****FLLACLLAFTVQIFFSLSVSSLASLLSI*********LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL**********
Disordered Region (DISOPRED)
*APKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEP*****
Disordered Region (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Disordered Region (DISPRO)
*APKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP*******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.894	0.835	0.301	2e-26
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.891	0.759	0.284	2e-25
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.891	0.752	0.287	3e-25
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.868	0.734	0.288	4e-25
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.581	0.491	0.361	6e-25
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.698	0.588	0.302	6e-22
Q803F5	415	Adipocyte plasma membrane	yes	no	0.678	0.573	0.298	9e-22
P94111	335	Strictosidine synthase 1	no	no	0.481	0.504	0.297	3e-15
P92976	329	Strictosidine synthase 3	no	no	0.478	0.510	0.308	2e-14
P68175	344	Strictosidine synthase OS	N/A	no	0.293	0.299	0.348	7e-09

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 38/352 (10%)

Query: 21  SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL 80
           S S      +  + + ++ ++   +L E  +N PE  S+V     L+T T DG V    L
Sbjct: 29  SFSFKEPPFMFGVLQPNTKLRQAERLFENQLNGPE--SIVNIGDVLFTGTADGRV--VKL 84

Query: 81  HN---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV--------- 119
            N   ET+  +     K  D +      LG+    +G + + D  KGL +V         
Sbjct: 85  ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKL 144

Query: 120 ---TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175
              +E  +E      SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +Y
Sbjct: 145 LLSSETPIEG--KKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEY 202

Query: 176 DPKLKETTVLHEGFYFANGIALSKNEDFVVVCES----WKRYWLKGDRAGILDAFIENLP 231
           D   KE  VL +   F NG+ LS  EDFV+V E+     +R ++ G   G  D F+EN+P
Sbjct: 203 DTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMP 262

Query: 232 GGPDNINLAPDGSFWI--GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 289
           G PDNI  +  G +W+    I+ N  G   +    +K  +      L S    M      
Sbjct: 263 GFPDNIRPSSSGGYWVAAATIRAN-PGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRY 321

Query: 290 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
            +V    + G   R  +DPD   +++V+ A E DG LYL S +S FI  L L
Sbjct: 322 SLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 38/351 (10%)

Query: 22  LSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH 81
           LS       L + + ++ ++   +L E  +  PE ++ +     ++T T DG V    L 
Sbjct: 69  LSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESIANI--GDVMFTGTADGRV--VKLE 124

Query: 82  N---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV---------- 119
           N   ET+  +     K  D +      LG+    +G + + D  KGL +V          
Sbjct: 125 NGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLL 184

Query: 120 --TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
             +E  +E      SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +YD
Sbjct: 185 LSSETPIEGR--KMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYD 242

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCE----SWKRYWLKGDRAGILDAFIENLPG 232
            + KE  VL +   F NG+ LS  EDFV+V E      +R+++ G   G  D F+ENLPG
Sbjct: 243 TQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPG 302

Query: 233 GPDNINLAPDGSFWIGL--IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR 290
            PDNI  +  G +W+ +  I+ N  G   +    E+  L      L S    M       
Sbjct: 303 FPDNIRASSSGGYWVSMAAIRAN-PGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYS 361

Query: 291 VVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           +V    + G  +R  +DP+   +++V+ A E  G+LYL S ++ ++  L L
Sbjct: 362 LVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 162/351 (46%), Gaps = 38/351 (10%)

Query: 22  LSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH 81
           LS      LL +   ++ ++   +L E  +  PE ++ +     ++T T DG V    L 
Sbjct: 70  LSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIAHI--GDVMFTGTADGRV--VKLE 125

Query: 82  N---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV---------- 119
           N   ET+  +     K  D + +    LG+    +G + + D  KGL +V          
Sbjct: 126 NGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLL 185

Query: 120 --TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
             +E  +E    + SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +YD
Sbjct: 186 LSSETPIEG--KNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYD 243

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCES----WKRYWLKGDRAGILDAFIENLPG 232
              +E  VL +   F NG+ LS  EDFV+V E+     +R ++ G   G  D F+EN+PG
Sbjct: 244 TVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPG 303

Query: 233 GPDNINLAPDGSFWIGL--IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR 290
            PDNI  +  G +W+G+  I+ N  G   +    E+  +      L S    M       
Sbjct: 304 FPDNIRPSSSGGYWVGMSTIRPN-PGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYS 362

Query: 291 VVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           +V    + G   R  +DPD    ++++   E DG+LYL S +S F+  L L
Sbjct: 363 LVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 162/361 (44%), Gaps = 56/361 (15%)

Query: 21  SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL 80
           S S      +  +   ++ ++   +L E  ++ PE  S+V     L+T T DG V    L
Sbjct: 68  SFSFKEPPFMFGVLHPNTKLRQAERLFENQLSGPE--SIVNIGDVLFTGTADGRV--VKL 123

Query: 81  HN---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV--------- 119
            N   ET+  +     K  D +      LG+    +G + + D  KGL +V         
Sbjct: 124 ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKL 183

Query: 120 ---TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175
              +E  +E      SF ND+    DG  +YFT +S+K+   D+   + E    G+L +Y
Sbjct: 184 LLSSETPIEG--KKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEY 241

Query: 176 DPKLKETTVLHEGFYFANGIALSKNEDFVVVCES----WKRYWLKGDRAGILDAFIENLP 231
           D   KE  VL +   F NG+ LS  EDFV+V E+     +R ++ G   G  D F+EN+P
Sbjct: 242 DTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMP 301

Query: 232 GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY---PGLISLLLPMGSDAG 288
           G PDNI  +  G +W+           A  +    + +LD     P +  ++  M S   
Sbjct: 302 GFPDNIRPSSSGGYWVAA---------ATIRANPGFSMLDFLSDKPFIKRMIFKMFSQET 352

Query: 289 --------ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP 340
                   + V++V  + G   R  +DPD   +++V+ A E DG LYL S +S FI  L 
Sbjct: 353 VMKFVPRYSLVLEV-SDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLS 411

Query: 341 L 341
           L
Sbjct: 412 L 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 20/224 (8%)

Query: 132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190
           SF ND+    DG  +YFT +S+K+   DF   + EG   G+L +YD   KE  VL  G  
Sbjct: 197 SFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLR 256

Query: 191 FANGIALSKNEDFVVVCES----WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 246
           F NG+ LS  EDFV+V E+     +RY++ G   G  D F+EN+PG PDNI L+  G +W
Sbjct: 257 FPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYW 316

Query: 247 IGL-IKMNQTGVRAIQKCREK-------WELLDAYPGLISLLLPMGSDAGARVVKVDGND 298
           + + +     G   +    EK       ++LL      ++ LLP  S     VV++    
Sbjct: 317 VAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQE--TVTKLLPKRS----LVVELS-ET 369

Query: 299 GKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD 342
           G   R F+DP    + +V+ A E +G LYL S +S FI  L L 
Sbjct: 370 GSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  105 bits (262), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 16/261 (6%)

Query: 97  LGLTTTKDGGVILCDNEKGLLKV---TEEGVEAIVPDA-------SFTNDVIAASDGT-L 145
           LG+    +G + + D   GL KV   T E    +           SF ND+    DG  +
Sbjct: 153 LGIRVGPNGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKV 212

Query: 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
           YFT +S+++   D+   + E    G++ +YD + KE TVL E   FANGI L  +E+ V+
Sbjct: 213 YFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVL 272

Query: 206 VCES----WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN-QTGVRAI 260
           V E+     +R  + G   G +D F++NLPG PDNI  +  G +W+ +  +    G   +
Sbjct: 273 VAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML 332

Query: 261 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA 320
               +K  +      L S  + M       +V      G  +R F+DP     ++V+ A 
Sbjct: 333 DFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAH 392

Query: 321 EFDGNLYLASLQSNFIGILPL 341
           E DG+LYL S +S ++  L L
Sbjct: 393 EHDGHLYLGSFRSPYLCKLDL 413

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 30/268 (11%)

Query: 97  LGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS--------FTNDVIAASDGT-L 145
           LG+    +G + + D   GL +V      V+++V            F ND+    DG  +
Sbjct: 152 LGIRVGPNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKV 211

Query: 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
           YFT +S+++   DF   + E    G++ +YD + KE  V+ E   F NGI L  +E+ V+
Sbjct: 212 YFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVL 271

Query: 206 VCESW----KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQ 261
           V E+     KR  + G   G +D FIENLPG PDNI  +  G +W+ +     + VR   
Sbjct: 272 VAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAM-----SAVRP-N 325

Query: 262 KCREKWELLDAYPGLISLLLPMGSDAG--------ARVVKVDGNDGKIIRDFNDPDATYI 313
                 + L   P L  L+  + S           + VV++  +DG  +R F+DP     
Sbjct: 326 PGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQ-SDGTCVRSFHDPQGLVS 384

Query: 314 SFVTSAAEFDGNLYLASLQSNFIGILPL 341
           ++ + A E+ G+LYL S +S ++  L L
Sbjct: 385 AYSSEAHEYSGHLYLGSFRSPYLCKLDL 412

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 36/205 (17%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  S++++P      +      G+L KYDP  K  TVL EG   + G A+S +  
Sbjct: 155 GVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGS 214

Query: 203 FVVVCE----SWKRYWLKGDRAGILDAFIENLPGGPDNI-NLAPDGSFWIGLIKMNQTGV 257
           FV+V +    + KRYW+KG +AG  + F  ++   PDNI  +   G+FW+  + +N+   
Sbjct: 215 FVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASV-VNK--- 269

Query: 258 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT 317
                                +++P    A    VKV+ N G++++     D    + ++
Sbjct: 270 ---------------------IIVPTNPSA----VKVNSN-GEVLQTIPLKDKFGDTLLS 303

Query: 318 SAAEFDGNLYLASLQSNFIGILPLD 342
              EF+GNLY+ +L   F GIL L+
Sbjct: 304 EVNEFEGNLYIGTLTGPFAGILKLE 328

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 36/204 (17%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  S+ + P D  K +A     G+  KYDP  K  TVL EG   + G A+S +  
Sbjct: 157 GVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGS 216

Query: 203 FVVVCE----SWKRYWLKGDRAGILDAFIENLPGGPDNI-NLAPDGSFWIGLIKMNQTGV 257
           FV+V +    + KRYW+KG +AG  + F  ++   PDNI  +   G+FW+  +  + TG 
Sbjct: 217 FVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVS-NPDNIKRIGSTGNFWVASVVNSATG- 274

Query: 258 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT 317
                                   P    A    VKV  + GK+++     D    + V+
Sbjct: 275 ------------------------PTNPSA----VKVS-SAGKVLQTIPLKDKFGDTLVS 305

Query: 318 SAAEFDGNLYLASLQSNFIGILPL 341
              E+ G LY+ +L   F GIL L
Sbjct: 306 EVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 160 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 219

Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
           FV+V E       +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 220 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 266

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.951	0.513	0.477	3e-85
297738547	461	unnamed protein product [Vitis vinifera]	0.951	0.724	0.477	4e-85
357450079	372	Adipocyte plasma membrane-associated pro	0.957	0.903	0.485	1e-84
388499476	372	unknown [Medicago truncatula]	0.957	0.903	0.485	2e-84
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.931	0.895	0.494	1e-82
297738546	382	unnamed protein product [Vitis vinifera]	0.931	0.856	0.494	1e-82
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.943	0.899	0.473	3e-81
357450077	352	Adipocyte plasma membrane-associated pro	0.945	0.943	0.472	3e-81
388492006	352	unknown [Medicago truncatula]	0.945	0.943	0.469	8e-81
388507342	352	unknown [Medicago truncatula]	0.945	0.943	0.472	2e-80

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/356 (47%), Positives = 243/356 (68%), Gaps = 22/356 (6%)

Query: 2   APKSFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHP 54
           A  SF LA  LAFT+QI+F        L +  +++ L+    S+ ++ + K+GEG ++ P
Sbjct: 298 ACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPT-SNKLQEVAKIGEGLLDKP 356

Query: 55  EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK 114
           EDV     +G LYTATRDGW+K  +  N +  +W+ I   +LLG+TTT+ GG+++CD +K
Sbjct: 357 EDV-CFDGEGILYTATRDGWIKR-LHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQK 414

Query: 115 GLLKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPY 169
           GLLKV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+   D+Y D+ E KP+
Sbjct: 415 GLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPH 474

Query: 170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDA 225
           GQL KYDP L ET++L +   FANG+ALS++EDF+VVCE+WK    +YWLKG+R G  + 
Sbjct: 475 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEV 534

Query: 226 FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 285
           F++NLPGGPDNINLAPDGSFWI L+++++ G+  +   +    L+  +P L+ L+   G 
Sbjct: 535 FVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLV--QGM 592

Query: 286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
              A VVKV G DGK+++ FNDP+ + +SFVT+A EF+ +LYL SL +NFIG LPL
Sbjct: 593 QKKAMVVKV-GADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 170/356 (47%), Positives = 243/356 (68%), Gaps = 22/356 (6%)

Query: 2   APKSFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHP 54
           A  SF LA  LAFT+QI+F        L +  +++ L+    S+ ++ + K+GEG ++ P
Sbjct: 109 ACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPT-SNKLQEVAKIGEGLLDKP 167

Query: 55  EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK 114
           EDV     +G LYTATRDGW+K  +  N +  +W+ I   +LLG+TTT+ GG+++CD +K
Sbjct: 168 EDV-CFDGEGILYTATRDGWIKR-LHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQK 225

Query: 115 GLLKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPY 169
           GLLKV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+   D+Y D+ E KP+
Sbjct: 226 GLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPH 285

Query: 170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDA 225
           GQL KYDP L ET++L +   FANG+ALS++EDF+VVCE+WK    +YWLKG+R G  + 
Sbjct: 286 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEV 345

Query: 226 FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 285
           F++NLPGGPDNINLAPDGSFWI L+++++ G+  +   +    L+  +P L+ L+   G 
Sbjct: 346 FVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLV--QGM 403

Query: 286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
              A VVKV G DGK+++ FNDP+ + +SFVT+A EF+ +LYL SL +NFIG LPL
Sbjct: 404 QKKAMVVKV-GADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 232/356 (65%), Gaps = 20/356 (5%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSL------ASLLSISKESSSMKGLTKLGEGCVNHPEDVS 58
           S +LA L+A TVQ+F+   +  +      ++    S +++ ++ + KLGEG +  PEDV 
Sbjct: 22  SLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVC 81

Query: 59  VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK 118
           V    G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD  +GLLK
Sbjct: 82  VD-KNGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLK 139

Query: 119 VTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173
           VTE+G   I+   +     F +DVI ASDG +YF+V S K+   D+Y D+ E +P+GQL 
Sbjct: 140 VTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLL 199

Query: 174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIEN 229
           KY+P L ET ++ +   FANG+ALSK+ED+VVVCE+WK    R+WLKG   G  D FIEN
Sbjct: 200 KYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIEN 259

Query: 230 LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 289
           LPGGPDNINLAPDGSFWI L+++    +  +        LL ++P LI+L+    +   A
Sbjct: 260 LPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLI--NSATKSA 317

Query: 290 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE 345
            V+ V G +G IIR F D +   ISFVTSA EF+ +LYL SL S+F+G LPL   E
Sbjct: 318 MVLNV-GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPLPSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 232/356 (65%), Gaps = 20/356 (5%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSL------ASLLSISKESSSMKGLTKLGEGCVNHPEDVS 58
           S +LA L+A TVQ+F+   +  +      ++    S +++ ++ + KLGEG +  PEDV 
Sbjct: 22  SLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVC 81

Query: 59  VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK 118
           V    G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD  +GLLK
Sbjct: 82  VD-KNGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLK 139

Query: 119 VTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173
           VTE+G   I+   +     F +DVI ASDG +YF+V S K+   D+Y D+ E +P+GQL 
Sbjct: 140 VTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLL 199

Query: 174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIEN 229
           KY+P L ET ++ +   FANG+ALSK+ED+VVVCE+WK    R+WLKG   G  D FIEN
Sbjct: 200 KYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIEN 259

Query: 230 LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 289
           LPGGPDNINLAPDGSFWI L+++    +  +        LL ++P LI+L+    +   A
Sbjct: 260 LPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLI--NSATKSA 317

Query: 290 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE 345
            V+ V G +G IIR F D +   ISFVTSA EF+ +LYL SL S+F+G LPL   E
Sbjct: 318 MVLNV-GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPLPSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/354 (49%), Positives = 235/354 (66%), Gaps = 27/354 (7%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSLASLLSISKESSS-------MKGLTKLGEGCVNHPEDV 57
           + +LAC+LA  +QIF    +S    LL + + SS+       ++ + K+GEG ++ PEDV
Sbjct: 19  TVILACILASALQIFLFSPIS--PDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDV 76

Query: 58  SVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGL 116
                +G LYTATRDGW+K   LH N +  +W+ I   SL+G+T T+ GG+I+CD EKGL
Sbjct: 77  -CFDGEGILYTATRDGWIKR--LHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGL 133

Query: 117 LKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171
           LKV E+GV  +    +     F NDVI A+DG++YF+VAST++   ++Y D+ E KP+GQ
Sbjct: 134 LKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQ 191

Query: 172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFI 227
           L KYDP L ET++L +   FANG+ALS++EDF+VVCE+WK    +YWL+G+R G  + FI
Sbjct: 192 LLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFI 251

Query: 228 ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 287
           +NLPGGPDN+NLAPDGSFWI LIK+   G   +   +    LL  +P L  L+   GS  
Sbjct: 252 DNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHK 309

Query: 288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
            A VVKV   DGKII  F+DP+   ISFVTSA EF+  LYL SL +NFIGILPL
Sbjct: 310 KASVVKV-AADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/354 (49%), Positives = 235/354 (66%), Gaps = 27/354 (7%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSLASLLSISKESSS-------MKGLTKLGEGCVNHPEDV 57
           + +LAC+LA  +QIF    +S    LL + + SS+       ++ + K+GEG ++ PEDV
Sbjct: 36  TVILACILASALQIFLFSPIS--PDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDV 93

Query: 58  SVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGL 116
                +G LYTATRDGW+K   LH N +  +W+ I   SL+G+T T+ GG+I+CD EKGL
Sbjct: 94  -CFDGEGILYTATRDGWIKR--LHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGL 150

Query: 117 LKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171
           LKV E+GV  +    +     F NDVI A+DG++YF+VAST++   ++Y D+ E KP+GQ
Sbjct: 151 LKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQ 208

Query: 172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFI 227
           L KYDP L ET++L +   FANG+ALS++EDF+VVCE+WK    +YWL+G+R G  + FI
Sbjct: 209 LLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFI 268

Query: 228 ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 287
           +NLPGGPDN+NLAPDGSFWI LIK+   G   +   +    LL  +P L  L+   GS  
Sbjct: 269 DNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHK 326

Query: 288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
            A VVKV   DGKII  F+DP+   ISFVTSA EF+  LYL SL +NFIGILPL
Sbjct: 327 KASVVKV-AADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 167/353 (47%), Positives = 234/353 (66%), Gaps = 22/353 (6%)

Query: 5   SFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDV 57
           SF+LA +LA T+QI+F        L +  +++ +++   ++ ++ +TK+GEG +N PED+
Sbjct: 19  SFVLASILASTLQIYFFSPISPDPLHLPPVSAAINLPT-NNKLQEVTKIGEGFLNKPEDL 77

Query: 58  SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLL 117
                +G LYTATRDGW+K  +  N +  +WK I   +LLG+TT + GG+ +CD +KGLL
Sbjct: 78  -CFDEEGILYTATRDGWIKR-LHRNGSWEDWKLIGGYALLGITTARAGGIFVCDAQKGLL 135

Query: 118 KVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL 172
           KV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+    +Y D+ E KP+GQL
Sbjct: 136 KVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEAKPHGQL 195

Query: 173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIE 228
            KYDP L ET+++ +   F NG+ALS++EDF+VVCE+WK    +YWLKG+R G  + FI+
Sbjct: 196 LKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTETFID 255

Query: 229 NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAG 288
           NLP GPDNINLAPDGSFWI LIK+   G   +   +     L  +P L  L+   GS+  
Sbjct: 256 NLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFPKLFQLV--NGSNEK 313

Query: 289 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           A VVKV   DGKI+  F+DP+   +SFVTSA EF+ +LYL SL +NFIG LPL
Sbjct: 314 ATVVKV-AADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPL 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 17/349 (4%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPG 232
           P   ET ++ +   FANG+ALSK+ED++VVCE+WK    ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 233 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 292
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTK--SAMVV 301

Query: 293 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 164/349 (46%), Positives = 229/349 (65%), Gaps = 17/349 (4%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKH+DS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPG 232
           P   ET ++ +   FANG+ALSK+ED++VVCE+WK    ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 233 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 292
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTK--SAMVV 301

Query: 293 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507342|gb|AFK41737.1| unknown [Medicago truncatula]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 17/349 (4%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDTILGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPG 232
           P   ET ++ +   FANG+ALSK+ED++VVCE+WK    ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 233 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 292
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTFKVSKHLVALFPRLVNMINSVTK--FAMVV 301

Query: 293 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.823	0.781	0.341	3.1e-35
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.817	0.773	0.327	1.5e-33
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.806	0.762	0.314	8.5e-33
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.823	0.778	0.332	2.3e-32
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.678	0.602	0.344	3.9e-28
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.663	0.629	0.346	3.5e-27
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.700	0.592	0.316	3.2e-26
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.569	0.481	0.365	1.1e-25
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.692	0.623	0.312	2.2e-25
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.680	0.580	0.307	9.7e-25

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 109/319 (34%), Positives = 163/319 (51%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G +N+PED++       +YT   DGWVK   +H   N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             L G+     G VI+ D  KGLL +++ G   E +  +A       T+ V  A +G LYFT
Sbjct:   116 L-GIAFGLHGEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS+KY    F  D  EGKP+G++  +DP  + T VL +  YFANGI++S ++   V CE
Sbjct:   175 DASSKYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCE 234

Query:   209 SWKR----YWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 264
             +  R    Y++  +R   ++ FI+ LPG PDNI    DG +WI LI    T  +   K  
Sbjct:   235 TIMRRCSKYYISEER---VEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYL 291

Query:   265 --EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 322
                K   + A  G + LL    S   A V++VD  DG  I  ++D      S +TS  + 
Sbjct:   292 FLRKLIYMAAKYG-VELL----SIKNAAVLQVD-LDGNPIAMYHDHP---FSHITSGVKI 342

Query:   323 DGNLYLASLQSNFIGILPL 341
               +LY  SL  ++I  L L
Sbjct:   343 GNHLYFGSLLHSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 105/321 (32%), Positives = 162/321 (50%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G +N PED++       +YT   DGWVK   +    N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             L G+     G VI+ D  KGLL ++ +G   E +  +A       T+ V  A +G LYFT
Sbjct:   116 L-GIAFGIHGEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS KYT      DM EGKP+G+L  +DP  + T VL +  YFANGI +S ++  ++ CE
Sbjct:   175 DASYKYTLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCE 234

Query:   209 S-WKR---YWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 264
             +  KR   Y++  +R   ++ F ++LPG PDNI    DG +WI L     +GV  +    
Sbjct:   235 TPMKRCSKYYISEER---VEVFTQSLPGYPDNIRYDGDGHYWIAL----PSGVTTLWNIS 287

Query:   265 EKWELLDAYPGLISLL---LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 321
              K+  L     +++     L    +AG   V +DGN    I  ++DP  ++I+      +
Sbjct:   288 LKYPFLRKLTAMVAKYGVDLMFMENAGVLQVDLDGNP---IAYYHDPKLSHIATCDKIGK 344

Query:   322 FDGNLYLASLQSNFIGILPLD 342
             +   LY  SL  + I  L LD
Sbjct:   345 Y---LYCGSLSQSHI--LRLD 360

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 99/315 (31%), Positives = 161/315 (51%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G ++ PED++       +YT   DGWVK   +H   N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS---FT-NDVIAASD-GTLYFT 148
             L G+     G VI+ D  KGLL ++ +G   E +   A    F   DV+A +D G LYFT
Sbjct:   116 L-GIAFGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS KYT      D+ EGKP+G+L  +DP  + T VL +  YFANG+++S ++  ++ CE
Sbjct:   175 DASYKYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCE 234

Query:   209 SWKR----YWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 264
             +  R    Y++  +R   ++ FI+ LPG PDNI    DG +WI ++    +G   + +  
Sbjct:   235 TPMRRCSKYYINEER---VEVFIQGLPGYPDNIRYDGDGHYWIAMV----SGASTLWRLS 287

Query:   265 EKWELL---DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 321
              K+  L    A      + L    +AG   V +DGN    I  ++D     +S +T+  +
Sbjct:   288 MKYPFLRKITAIAAKYGVELMFMKNAGVLQVDLDGNP---IAYYHDQR---LSHITTGIK 341

Query:   322 FDGNLYLASLQSNFI 336
                 LY  ++  ++I
Sbjct:   342 IGNYLYCGNILHSYI 356

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 106/319 (33%), Positives = 157/319 (49%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLVNWKHIDSQSL 96
             + G   +G G +N PED++     G +YT   DGWVK   +    N++LV          
Sbjct:    56 LTGAEFIGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRP 115

Query:    97 LGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTN----DVIAASD-GTLYFTV 149
             LG+     G VI+ D  KGLL ++ +G   E +  +A        D +  +D G LYFT 
Sbjct:   116 LGIAFGIHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTD 175

Query:   150 ASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209
              S KY    F  D+ EGKP+G+L  +DP  K T VL    YFANG++LS ++  +V CE+
Sbjct:   176 GSYKYNLHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCET 235

Query:   210 ----WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE 265
                   +Y++ G R   ++ FI+ LPG PDNI    DG +WI +     +GV  + K   
Sbjct:   236 PIRRCSKYYINGGR---VELFIQGLPGYPDNIRYDGDGHYWIAM----PSGVTTLWKLSM 288

Query:   266 KWELLDAYPGLISLL--LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD 323
             K+  L     + +     PM  +  A V++VD  DG  I  ++D     +S +T+  +  
Sbjct:   289 KYPFLRKITAMAAKYGYEPMFME-NAGVLQVD-LDGNPIAYYHDQA---LSHITTGVKIG 343

Query:   324 GNLYLASLQSNFIGILPLD 342
               LY  SL  + I  L LD
Sbjct:   344 NYLYCGSLWHSHI--LRLD 360

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 96/279 (34%), Positives = 136/279 (48%)

Query:    89 KHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTEEGVEA--IVPDAS-----FTNDVIAA 140
             +HI  + L GL   K  G + + D   GLLKV  EG  A  +V +A      FTND+  A
Sbjct:   132 EHICGRPL-GLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIA 190

Query:   141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN 200
              DGT+YFT +S  Y   +F + +  G   G++ KYDP  K+  VL     F NG+++S++
Sbjct:   191 DDGTVYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRD 250

Query:   201 EDFVVVCE----SWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTG 256
               F V CE    S +RYWLKG++AG  D F   LPG PDN+     G FW+ L       
Sbjct:   251 GSFFVFCEGDIGSLRRYWLKGEKAGTTDVFAY-LPGHPDNVRTNQKGEFWVAL------- 302

Query:   257 VRAIQKCREKWE--LLDAYPGL--ISLLLPMGS------DAGAR----VVKVDGNDGKII 302
                   CR  +   L+  YP L    L LP+ +        G R    VVK    +GK++
Sbjct:   303 -----HCRRNYYSYLMARYPKLRMFILRLPITARTHYSFQIGLRPHGLVVKYSP-EGKLM 356

Query:   303 RDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 341
                 D +   +  V+   E DG L++ S+  NF+ +  L
Sbjct:   357 HVLEDSEGKVVRSVSEVEEKDGKLWMGSVLMNFVAVYDL 395

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 87/251 (34%), Positives = 126/251 (50%)

Query:    97 LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDV-IAASDGTLYF 147
             LGLT   K G + +CD   GL+KV  EG   E IV +A      F N   I   +   YF
Sbjct:   111 LGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEEDVFYF 170

Query:   148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207
               +S KY   D +     G+  G++ +YD K KE  V+ +     NG+AL+K+  F++ C
Sbjct:   171 NDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITC 230

Query:   208 ESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL-IKMNQTGVRAIQK 262
             ES      RYW+KG +AG  D F + +PG PDNI L   G FWIGL  K N  G R I K
Sbjct:   231 ESGTSLVHRYWIKGPKAGTRDIFAK-VPGYPDNIRLTSTGDFWIGLHCKKNLIG-RLIVK 288

Query:   263 CREKWELLDAYPGLISLLLPM-GSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 321
              +   +L++    L  ++  + G       VK+ G  G+++    D +   + +V+ A E
Sbjct:   289 YKWLGKLVEKTMKLEYVIAFINGFKPHGVAVKISGETGEVLELLEDKEGKTMKYVSEAYE 348

Query:   322 FD-GNLYLASL 331
              D G L+  S+
Sbjct:   349 RDDGKLWFGSV 359

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 83/262 (31%), Positives = 128/262 (48%)

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVT--EEGVEAIVPDA--------SFTNDVIAASDGT- 144
             LLG+    +G + + D  KGL +V   +  V+ +V           SF ND+    DG  
Sbjct:   151 LLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKK 210

Query:   145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204
             +YFT +S+K+   D+   + EG   G+L +YD + KE  VL +   F NG+ LS  EDFV
Sbjct:   211 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFV 270

Query:   205 VVCESW----KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQT-GVRA 259
             +V E+     +R+++ G   G  D F+ENLPG PDNI  +  G +W+G+  +    G   
Sbjct:   271 LVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSM 330

Query:   260 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSA 319
             +    E+  +      L S    M       +V    N G   R  +DP     S+V+  
Sbjct:   331 LDFLSERPYIKRMIFKLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYVSEV 390

Query:   320 AEFDGNLYLASLQSNFIGILPL 341
              E++G+LYL S ++ F+  L L
Sbjct:   391 HEYNGHLYLGSFRAPFLCRLSL 412

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 79/216 (36%), Positives = 112/216 (51%)

Query:   132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190
             SF ND+    DG  +YFT +S+K+   DF   + EG   G+L +YD   KE  VL  G  
Sbjct:   197 SFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLR 256

Query:   191 FANGIALSKNEDFVVVCESW----KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 246
             F NG+ LS  EDFV+V E+     +RY++ G   G  D F+EN+PG PDNI L+  G +W
Sbjct:   257 FPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYW 316

Query:   247 IGL-IKMNQTGVRAIQKCREK-WELLDAYPGL----ISLLLPMGSDAGARVVKVDGNDGK 300
             + + +     G   +    EK W     +  L    ++ LLP  S     VV++    G 
Sbjct:   317 VAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRS----LVVELS-ETGS 371

Query:   301 IIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI 336
               R F+DP    + +V+ A E +G LYL S +S FI
Sbjct:   372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 81/259 (31%), Positives = 126/259 (48%)

Query:    97 LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             LGL    K+G + + D   G++KV  EG    ++  +A      FTND+    +G +YFT
Sbjct:   133 LGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDEGNVYFT 192

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              +S+ +    F   +  G+  G++ KY+PK KETT L     F NG++L K+  F + CE
Sbjct:   193 DSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCE 252

Query:   209 S----WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL-IKMNQ-TGVRAIQK 262
                   ++YWLKG++AG  +  +  L G PDNI    DG FW+ +    N  T + A   
Sbjct:   253 GSIGRLRKYWLKGEKAGTSEV-VALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHLMAHYP 311

Query:   263 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 322
                K+ L          LL +G    A  VK    +GK+++   D     +  V+   E 
Sbjct:   312 RVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYS-EEGKVLKVLEDSKGKVVKAVSEVEEK 370

Query:   323 DGNLYLASLQSNFIGILPL 341
             DG L++ S+  +FI +  L
Sbjct:   371 DGKLWMGSVLMSFIAVYDL 389

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 79/257 (30%), Positives = 127/257 (49%)

Query:    97 LGLTTTKDGGVILCDNEKGLLKVT--EEGVEAIVPDA--------SFTNDVIAASDGT-L 145
             LG+    +G + + D  KGL +V   +  V+ ++           SF ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKI 211

Query:   146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
             YFT +S+K+   D+   + EG   G+L +YD + KE  VL +   F NG+ LS  EDFV+
Sbjct:   212 YFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVL 271

Query:   206 VCE----SWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL--IKMNQTGVRA 259
             V E      +R+++ G   G  D F+ENLPG PDNI  +  G +W+ +  I+ N  G   
Sbjct:   272 VVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANP-GFSM 330

Query:   260 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSA 319
             +    E+  L      L S    M       +V    + G  +R  +DP+   +++V+ A
Sbjct:   331 LDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEA 390

Query:   320 AEFDGNLYLASLQSNFI 336
              E  G+LYL S ++ ++
Sbjct:   391 HEHSGHLYLGSFRAPYL 407

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TP48	APMAP_RAT	No assigned EC number	0.3011	0.8945	0.8351	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	1e-23
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-18
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	7e-08

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 92.8 bits (231), Expect = 1e-23
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL 197
           +    G LYFT +S++Y        M EG   G+L KYDP  K T VL +  YF NGIAL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 198 SKNEDFVVVCES----WKRYWLKG 217
           S +  FV+ CE+      +YW+KG
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKG 88

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 53/231 (22%), Positives = 78/231 (33%), Gaps = 51/231 (22%)

Query: 46  LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---------WKHIDSQSL 96
           LGEG V  P+        GAL       WV   IL                +      S 
Sbjct: 26  LGEGPVWDPDR-------GALL------WVD--ILGGRIHRLDPETGKKRVFPSPGGFSS 70

Query: 97  LGLTTTKDGGVILCDNEKGLLKVTEEG-------VEAIVPDASFTNDVIAASDGTLYFTV 149
            G      G +I C++   LL     G        E  +P     ND +   DG ++F  
Sbjct: 71  -GALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRP-NDGVVDPDGRIWFG- 127

Query: 150 ASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209
                    F    +E +P G L + DP      +L +     NG+A S +   + V ++
Sbjct: 128 -----DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182

Query: 210 WK----RYWLKGDRAGILDA------FIENLPGGPDNINLAPDGSFWIGLI 250
                 RY L  D A             +  PG PD + +  DG+ W+  +
Sbjct: 183 PANRIHRYDL--DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 51/224 (22%), Positives = 75/224 (33%), Gaps = 48/224 (21%)

Query: 46  LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW------KHIDSQSLLGL 99
           LGEG V   E+       GALY      WV   IL                 D    +G 
Sbjct: 1   LGEGPVWDEEE-------GALY------WVD--ILGGRIHRLDPATGKETVWDLPGPVGA 45

Query: 100 TT-TKDGGVILCDN-EKGLLKVTEEGVEAIV------PDASFTNDVIAASDGTLYFTVAS 151
                DG +I+       LL +    +  +       P   F ND     DG  +F    
Sbjct: 46  IALRDDGRLIVALKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFG--- 101

Query: 152 TKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211
                     D+A G   G L + DP  K    + +G   +NG+A S +   +   +S  
Sbjct: 102 ------TMGFDIAPGGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYFADSPT 154

Query: 212 R------YWLKGDRAGILDAFI--ENLPGGPDNINLAPDGSFWI 247
           R      Y   G        F   ++  G PD + +  +G+ W+
Sbjct: 155 RRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWV 198

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.95
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.76
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.67
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.56
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.17
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.16
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.14
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.12
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.11
PRK11028	330	6-phosphogluconolactonase; Provisional	99.08
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.95
COG3391	381	Uncharacterized conserved protein [Function unknow	98.93
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.93
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.87
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.81
COG3391	381	Uncharacterized conserved protein [Function unknow	98.79
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.78
PRK04792	448	tolB translocation protein TolB; Provisional	98.78
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.77
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
PRK04922	433	tolB translocation protein TolB; Provisional	98.67
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.67
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.64
PRK05137	435	tolB translocation protein TolB; Provisional	98.61
PRK02889	427	tolB translocation protein TolB; Provisional	98.61
PRK03629	429	tolB translocation protein TolB; Provisional	98.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.6
PRK00178	430	tolB translocation protein TolB; Provisional	98.6
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.59
PRK05137	435	tolB translocation protein TolB; Provisional	98.54
PRK03629	429	tolB translocation protein TolB; Provisional	98.5
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.5
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.49
PRK04792	448	tolB translocation protein TolB; Provisional	98.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.48
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.45
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.44
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.38
PRK02889	427	tolB translocation protein TolB; Provisional	98.37
PRK01742	429	tolB translocation protein TolB; Provisional	98.35
PRK00178	430	tolB translocation protein TolB; Provisional	98.33
PRK04922	433	tolB translocation protein TolB; Provisional	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
KOG0266	456	consensus WD40 repeat-containing protein [General	98.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.3
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.3
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.3
KOG0266	456	consensus WD40 repeat-containing protein [General	98.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.24
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.21
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.19
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.19
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.18
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.17
PTZ00421	493	coronin; Provisional	98.16
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.15
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.12
KOG2055	514	consensus WD40 repeat protein [General function pr	98.12
PRK01029	428	tolB translocation protein TolB; Provisional	98.09
PRK04043	419	tolB translocation protein TolB; Provisional	98.07
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.03
KOG0263	707	consensus Transcription initiation factor TFIID, s	98.02
KOG0286	343	consensus G-protein beta subunit [General function	98.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.99
PRK01742	429	tolB translocation protein TolB; Provisional	97.97
KOG1273	405	consensus WD40 repeat protein [General function pr	97.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.91
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.89
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.89
KOG0286	343	consensus G-protein beta subunit [General function	97.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.88
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.81
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.8
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.79
PTZ00421	493	coronin; Provisional	97.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.75
KOG0296	399	consensus Angio-associated migratory cell protein	97.74
PLN00181	793	protein SPA1-RELATED; Provisional	97.71
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.69
PLN00181	793	protein SPA1-RELATED; Provisional	97.68
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.66
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.65
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.61
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.57
KOG1539	910	consensus WD repeat protein [General function pred	97.53
COG4946	668	Uncharacterized protein related to the periplasmic	97.51
KOG0289	506	consensus mRNA splicing factor [General function p	97.51
PRK13684	334	Ycf48-like protein; Provisional	97.5
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.48
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.48
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.42
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.42
PRK02888	635	nitrous-oxide reductase; Validated	97.38
PTZ00420	568	coronin; Provisional	97.38
PRK01029	428	tolB translocation protein TolB; Provisional	97.37
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.37
KOG0284	464	consensus Polyadenylation factor I complex, subuni	97.37
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.33
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.32
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.31
KOG0643	327	consensus Translation initiation factor 3, subunit	97.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.29
PRK13684	334	Ycf48-like protein; Provisional	97.29
COG4946	668	Uncharacterized protein related to the periplasmic	97.29
COG3211	616	PhoX Predicted phosphatase [General function predi	97.28
PTZ00420	568	coronin; Provisional	97.28
KOG1274	933	consensus WD40 repeat protein [General function pr	97.26
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.21
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.16
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.16
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.14
KOG2055	514	consensus WD40 repeat protein [General function pr	97.14
KOG0646	476	consensus WD40 repeat protein [General function pr	97.11
KOG0289	506	consensus mRNA splicing factor [General function p	97.1
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.93
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.85
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.78
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.69
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.67
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.66
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.65
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.6
KOG0645	312	consensus WD40 repeat protein [General function pr	96.57
KOG2048	691	consensus WD40 repeat protein [General function pr	96.54
KOG1274	933	consensus WD40 repeat protein [General function pr	96.54
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.51
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.5
KOG2048	691	consensus WD40 repeat protein [General function pr	96.49
KOG0296	399	consensus Angio-associated migratory cell protein	96.47
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.4
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.4
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.39
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.37
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.34
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.33
COG3211	616	PhoX Predicted phosphatase [General function predi	96.29
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.28
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.25
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.23
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.21
KOG0639	705	consensus Transducin-like enhancer of split protei	96.19
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.03
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	96.02
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	96.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.87
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.83
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.82
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.81
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.78
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.69
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.57
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.56
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.49
KOG0295	406	consensus WD40 repeat-containing protein [Function	95.43
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.43
KOG0646	476	consensus WD40 repeat protein [General function pr	95.42
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.42
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.29
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.28
KOG2139	445	consensus WD40 repeat protein [General function pr	95.23
KOG2096	420	consensus WD40 repeat protein [General function pr	95.15
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.12
KOG1273	405	consensus WD40 repeat protein [General function pr	95.04
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.02
KOG0772	641	consensus Uncharacterized conserved protein, conta	94.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.83
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.73
KOG0643	327	consensus Translation initiation factor 3, subunit	94.69
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	94.67
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	94.65
PRK13616	591	lipoprotein LpqB; Provisional	94.63
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.62
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.59
KOG2096	420	consensus WD40 repeat protein [General function pr	94.55
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.54
KOG2110	391	consensus Uncharacterized conserved protein, conta	94.46
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.37
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.25
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.22
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.06
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.6
KOG0288	459	consensus WD40 repeat protein TipD [General functi	93.53
KOG0308	735	consensus Conserved WD40 repeat-containing protein	93.51
KOG2139	445	consensus WD40 repeat protein [General function pr	93.28
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.26
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	93.22
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.1
KOG2321	703	consensus WD40 repeat protein [General function pr	93.05
KOG0645	312	consensus WD40 repeat protein [General function pr	92.99
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	92.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	92.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	92.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.62
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.46
KOG0647	347	consensus mRNA export protein (contains WD40 repea	92.32
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.31
KOG0295	406	consensus WD40 repeat-containing protein [Function	92.25
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.19
KOG4328	498	consensus WD40 protein [Function unknown]	92.15
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	92.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.97
KOG2321	703	consensus WD40 repeat protein [General function pr	91.76
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	91.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	91.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.39
PF07494	24	Reg_prop: Two component regulator propeller; Inter	91.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	91.19
KOG3881	412	consensus Uncharacterized conserved protein [Funct	91.15
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.07
KOG0294	362	consensus WD40 repeat-containing protein [Function	90.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	90.76
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	90.61
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.42
KOG1539	910	consensus WD repeat protein [General function pred	90.42
KOG4547	541	consensus WD40 repeat-containing protein [General	90.19
KOG0284	464	consensus Polyadenylation factor I complex, subuni	90.18
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	90.14
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	89.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	89.76
KOG0641	350	consensus WD40 repeat protein [General function pr	89.46
KOG0639	705	consensus Transducin-like enhancer of split protei	89.43
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	89.33
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	89.32
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	88.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	88.7
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	88.68
KOG1963	792	consensus WD40 repeat protein [General function pr	88.61
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.01
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	87.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.61
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	87.51
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	87.31
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	87.06
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	87.03
KOG0649	325	consensus WD40 repeat protein [General function pr	86.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	86.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	86.05
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	85.69
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.68
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	85.52
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	85.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	85.14
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	84.59
KOG1215	877	consensus Low-density lipoprotein receptors contai	84.57
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	84.3
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	84.22
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.0
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	83.92
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	83.84
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	83.83
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	83.28
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	83.25
PHA02713	557	hypothetical protein; Provisional	82.38
PRK13616	591	lipoprotein LpqB; Provisional	82.3
KOG4547	541	consensus WD40 repeat-containing protein [General	81.85
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	81.6
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	81.25
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.15
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	81.12
KOG0647	347	consensus mRNA export protein (contains WD40 repea	80.53

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=5.4e-46  Score=334.10  Aligned_cols=304  Identities=35%  Similarity=0.565  Sum_probs=252.1

Q ss_pred             CCcCccCceEecCCCcCCCceEEEeeCCC-eEEEEEcCCEEEEEEcC--CC--e-----EEEEeecCCccccceEEcCCC
Q 018705           36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILH--NE--T-----LVNWKHIDSQSLLGLTTTKDG  105 (351)
Q Consensus        36 ~~~~l~~~~~i~~~~~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~--~g--~-----~~~~~~~~~~p~~gl~~d~~G  105 (351)
                      +++.+...|.+..+....|+.+.+. ++. ..|.+..+|+|-+.+..  ..  .     .......|+||. ||+++.+|
T Consensus        49 ~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g  126 (376)
T KOG1520|consen   49 PNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG  126 (376)
T ss_pred             cccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence            4555666665555555555555555 333 36778778877776641  10  0     111234679999 99999887


Q ss_pred             -CEEEEeCCCCeEEEcCCC--eEEecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705          106 -GVILCDNEKGLLKVTEEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (351)
Q Consensus       106 -~L~v~d~~~gl~~~~~~g--~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  177 (351)
                       +|||||.+.|++.++++|  .+.+.+..     .+.|++.++++|.+||||++++|+.+++...+++++++||+++||+
T Consensus       127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~  206 (376)
T KOG1520|consen  127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP  206 (376)
T ss_pred             CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence             999999999999999855  55555543     7899999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCC
Q 018705          178 KLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN  253 (351)
Q Consensus       178 ~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~  253 (351)
                      .++.++++.+++.+|||+++|+|++++.++|+..    |||+++++.|+.++|++++||+||||..+++|++||+....+
T Consensus       207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~  286 (376)
T KOG1520|consen  207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR  286 (376)
T ss_pred             cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence            9999999999999999999999999999999876    899999999999999989999999999999999999999999


Q ss_pred             chhhhhhhcChhHHHHHHhccchhhcccCCC--CCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705          254 QTGVRAIQKCREKWELLDAYPGLISLLLPMG--SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                      +..++++.++|++|+++.+++....++..+.  ..++..|.+.|. +|+++++||++++.....++.+.+++|+||+||.
T Consensus       287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~-~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~  365 (376)
T KOG1520|consen  287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDE-TGKILESLHDKEGKVITLVSEVGEHDGHLYIGSL  365 (376)
T ss_pred             chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecC-CCcEEEEEecCCCCceEEEEEEeecCCeEEEccc
Confidence            9999999999999999999866654333221  123356677778 9999999999999887778888888999999999


Q ss_pred             CCCeEEEEeCC
Q 018705          332 QSNFIGILPLD  342 (351)
Q Consensus       332 ~~~~i~~~~~~  342 (351)
                      ..+++++++++
T Consensus       366 ~~p~i~~lkl~  376 (376)
T KOG1520|consen  366 FNPYIARLKLP  376 (376)
T ss_pred             CcceeEEEecC
Confidence            99999999974

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.6e-25  Score=203.27  Aligned_cols=236  Identities=22%  Similarity=0.348  Sum_probs=180.1

Q ss_pred             cCCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-e-EE
Q 018705           51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA  126 (351)
Q Consensus        51 ~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~-~~  126 (351)
                      ..-.|+..++++.+ .+|++...++|+++++.+|+.+.+..+...+. +..+|..|+|+++..+  +++++ .++ . +.
T Consensus        24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~  100 (307)
T COG3386          24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEHG--VRLLDPDTGGKITL  100 (307)
T ss_pred             cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEccc--cEEEeccCCceeEE
Confidence            56789999997766 57899999999999998898989988888888 9999999999999865  44555 444 4 66


Q ss_pred             ecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705          127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       127 l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg  201 (351)
                      +....     +++||+.++++|++||+++.+ +.     ....+..+.|.||++||.++..+.+...+..|||||||||+
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg  174 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG  174 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence            55432     899999999999999999873 11     22333456789999999655555555559999999999999


Q ss_pred             CEEEEEecce----eEEee---cCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhc
Q 018705          202 DFVVVCESWK----RYWLK---GDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  273 (351)
Q Consensus       202 ~~lyv~~~~~----~~~i~---~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      +++|++++..    ++++.   ....++ ...+.+..+|.|||+++|++|+||++....                     
T Consensus       175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---------------------  233 (307)
T COG3386         175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---------------------  233 (307)
T ss_pred             CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------
Confidence            9999999975    55554   122222 233444567999999999999999754321                     


Q ss_pred             cchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEecCCCe
Q 018705          274 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQSNF  335 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~~~~~  335 (351)
                                    -+.|.+|+| +|+.+..+..|.    ..++++++.+   ++|||++...+.
T Consensus       234 --------------g~~v~~~~p-dG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         234 --------------GGRVVRFNP-DGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             --------------CceEEEECC-CCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence                          137999999 999999998875    2466777665   899999987744

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.95  E-value=1.8e-25  Score=199.70  Aligned_cols=223  Identities=27%  Similarity=0.393  Sum_probs=166.1

Q ss_pred             CceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEcC-CC-eEEecC
Q 018705           54 PEDVSVVVSKGALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE-EG-VEAIVP  129 (351)
Q Consensus        54 pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~-~g-~~~l~~  129 (351)
                      ||++++|+.++.|| ++...++|+++++.+++.+.+....  |. |++++ ++|+||+++. .++..++. ++ .+.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence            79999996466665 5667899999999888776655443  88 99999 7899999996 46677784 66 555432


Q ss_pred             ------CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705          130 ------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       130 ------~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                            ....||++++|++|++|+|++......         ....|+|++++++ ++++.+...+..||||++++|++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence                  237899999999999999997522110         0011789999998 888888888999999999999999


Q ss_pred             EEEEecce----eEEeecCC--CCceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccc
Q 018705          204 VVVCESWK----RYWLKGDR--AGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  275 (351)
Q Consensus       204 lyv~~~~~----~~~i~~~~--~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      ||++++..    +|.+....  ....+.+.+  ...+.|||+++|++|+||++....                       
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----------------------  204 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----------------------  204 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence            99999877    44444221  233455543  233469999999999999997642                       


Q ss_pred             hhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE---CCEEEEEec
Q 018705          276 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASL  331 (351)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~ig~~  331 (351)
                                   +.|.+||| +|+.+..+..|.    ..++++++.   .++|||++.
T Consensus       205 -------------~~I~~~~p-~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 -------------GRIVVFDP-DGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -------------TEEEEEET-TSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred             -------------CEEEEECC-CccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence                         47999999 999999998762    257888874   378999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.85  E-value=3.8e-19  Score=152.94  Aligned_cols=242  Identities=16%  Similarity=0.144  Sum_probs=178.4

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      ...++......|.+++.++++-.+|.+...|.|-++|+.+|+++.+. ..+..|. +|.+++||.+||+|.+..|.|+++
T Consensus        53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dp  131 (353)
T COG4257          53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDP  131 (353)
T ss_pred             cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecC
Confidence            34555655678999999954446777888889999999999998875 4456899 999999999999999999999996


Q ss_pred             -CC-eEEecCCC----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-Cccccce
Q 018705          122 -EG-VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANG  194 (351)
Q Consensus       122 -~g-~~~l~~~~----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ng  194 (351)
                       +. ++.+.-..    ...|..++|++|++|||...                  |---++||.++.++++.. ....|+|
T Consensus       132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG  193 (353)
T COG4257         132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG  193 (353)
T ss_pred             cccceEEeecccccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence             66 77764332    67888999999999999865                  223378888777776643 3457999


Q ss_pred             EEEcCCCCEEEEEecce-eEEeecCCCCceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHH
Q 018705          195 IALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  271 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ||..|||. +|+++... .+-..++..+..+.+..  .+......+..|+.|++|+++..                    
T Consensus       194 i~atpdGs-vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--------------------  252 (353)
T COG4257         194 ICATPDGS-VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--------------------  252 (353)
T ss_pred             eEECCCCc-EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC--------------------
Confidence            99999997 99998665 33333344455555532  12223456778999999999643                    


Q ss_pred             hccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-EECCEEEEEecCCCeEEEEeCCC
Q 018705          272 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                      .+.+.+||| .-+.-.+|.-|...  ....++. ...|++|+.....+.|.||+..+
T Consensus       253 ----------------~g~l~rfdP-s~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         253 ----------------TGSLHRFDP-SVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ----------------CceeeEeCc-ccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc
Confidence                            246899999 55545677665432  2234444 45699999999999999998543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.77  E-value=8.3e-19  Score=128.66  Aligned_cols=84  Identities=54%  Similarity=0.965  Sum_probs=69.2

Q ss_pred             ccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--
Q 018705          135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--  211 (351)
Q Consensus       135 n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--  211 (351)
                      |+++++++ |.||||+++.+|..+++..+++++.++|+|++|||++++++++.+++.+||||++++|+++++|+|+..  
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            68999998 899999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             --eEEeecC
Q 018705          212 --RYWLKGD  218 (351)
Q Consensus       212 --~~~i~~~  218 (351)
                        |||++++
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence              8998753

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.76  E-value=1.8e-15  Score=158.87  Aligned_cols=240  Identities=18%  Similarity=0.208  Sum_probs=163.3

Q ss_pred             CcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeec---------------CCccccceEEcCCCC-EEEEeC
Q 018705           50 CVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI---------------DSQSLLGLTTTKDGG-VILCDN  112 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~---------------~~~p~~gl~~d~~G~-L~v~d~  112 (351)
                      .+..|.++++|+.++.+||+. .+++|.++|. +|+.......               ..+|. |+++|++|+ |||+|.
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt  643 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADT  643 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeC
Confidence            378899999997678898865 5788999998 4544332211               13699 999998875 899998


Q ss_pred             CCC-eEEEcC-CC-eEEecCC-----------------CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCce
Q 018705          113 EKG-LLKVTE-EG-VEAIVPD-----------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (351)
Q Consensus       113 ~~g-l~~~~~-~g-~~~l~~~-----------------~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~  171 (351)
                      .++ +.+++. ++ ++++...                 .+.|.++++++ +|.+|+++..                 +++
T Consensus       644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~  706 (1057)
T PLN02919        644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQ  706 (1057)
T ss_pred             CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCe
Confidence            765 555664 56 6665321                 15789999999 6799999976                 357


Q ss_pred             EEEEeCCCCeEEEee---------------cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-------
Q 018705          172 LRKYDPKLKETTVLH---------------EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE-------  228 (351)
Q Consensus       172 l~~~d~~~~~~~~~~---------------~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~-------  228 (351)
                      |++||+.++.+..+.               ..+..|+||+++++++.|||++..+ ++++-+...+.......       
T Consensus       707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~  786 (1057)
T PLN02919        707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD  786 (1057)
T ss_pred             EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence            888887766554432               1245799999999999999999876 44433222222111110       


Q ss_pred             --------------cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018705          229 --------------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV  294 (351)
Q Consensus       229 --------------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  294 (351)
                                    ..-..|.++++|++|++||+...                                    .+.|.+|
T Consensus       787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------------------------------------N~rIrvi  830 (1057)
T PLN02919        787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------------------------------------NHKIKKL  830 (1057)
T ss_pred             ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------------------------------------CCEEEEE
Confidence                          01125889999999999999754                                    2368888


Q ss_pred             ECCCCeEEEEEECC------CC----CcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705          295 DGNDGKIIRDFNDP------DA----TYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       295 ~~~~g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      |+ ++..+..+...      +|    ..+..++++..+ +|+||++...++.|.++++.+..
T Consensus       831 D~-~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        831 DP-ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EC-CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            98 55444443321      11    112345666654 68999999999999999987653

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.70  E-value=1.5e-14  Score=124.76  Aligned_cols=247  Identities=8%  Similarity=0.046  Sum_probs=171.1

Q ss_pred             CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC----CccccceEEcCCCCEEEEeC
Q 018705           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDN  112 (351)
Q Consensus        37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~d~  112 (351)
                      |.+-..+++++.|....|.+|.++| +|..|+......|.|+|+++.++++|.-+.    .+-. ...||++|+||++..
T Consensus        89 dP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q  166 (353)
T COG4257          89 DPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ  166 (353)
T ss_pred             CCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec
Confidence            3444557888888889999999995 566666554447999999999999886443    3445 788999999999875


Q ss_pred             CCCeEEEcC-CC-eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--
Q 018705          113 EKGLLKVTE-EG-VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--  187 (351)
Q Consensus       113 ~~gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--  187 (351)
                      .+--=++++ .+ ++++.... ..|++||+.+||.+|++.-.                 .+.|-++||.++..+++..  
T Consensus       167 ~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~  229 (353)
T COG4257         167 IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPN  229 (353)
T ss_pred             cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCC
Confidence            432336676 56 88876554 78999999999999998753                 2468899998876555432  


Q ss_pred             C-ccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEe-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          188 G-FYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       188 ~-~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      . -....+|-.|+.|+ +|+++..+ +....++.......+. .+....|+.+.+|+.|++|......            
T Consensus       230 ~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a------------  296 (353)
T COG4257         230 ALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA------------  296 (353)
T ss_pred             cccccccccccCccCc-EEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc------------
Confidence            1 12334566788886 99987766 4333333222222221 1222357889999999999986542            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                                              +.+.+||| ....+.+|..+.-  ......+--..|++|++...-+.+.+++..
T Consensus       297 ------------------------gai~rfdp-eta~ftv~p~pr~--n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~  347 (353)
T COG4257         297 ------------------------GAIGRFDP-ETARFTVLPIPRP--NSGNIQLDGRPGELWFTEAGVDALVTTRIG  347 (353)
T ss_pred             ------------------------CceeecCc-ccceEEEecCCCC--CCCceeccCCCCceeecccCcceeEEEEee
Confidence                                    46899999 7777888876542  222222223469999999888888877744

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-14  Score=120.50  Aligned_cols=227  Identities=18%  Similarity=0.222  Sum_probs=150.2

Q ss_pred             ceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC--CEEEEeCCCCeEEEcCCC----eEEe
Q 018705           55 EDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTEEG----VEAI  127 (351)
Q Consensus        55 e~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~d~~~gl~~~~~~g----~~~l  127 (351)
                      |++.|+...+ ++||+...|.|.|+|..+.++.+. ...+.|.-|.++--.|  +.+++.-+.....++=+|    ..++
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~   96 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVY   96 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeee
Confidence            7778875544 678999999999999877666443 2223322155443222  455554444333333222    2222


Q ss_pred             cC-----C---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705          128 VP-----D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (351)
Q Consensus       128 ~~-----~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~  199 (351)
                      ..     .   .++.||--+||+|+.|...++. +.      +.+| ...|.|+++-+. ++++.+.....-+||++++.
T Consensus        97 ~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~  167 (310)
T KOG4499|consen   97 RTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLAG-HQVELIWNCVGISNGLAWDS  167 (310)
T ss_pred             eeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEeccC-CCceeeehhccCCccccccc
Confidence            22     1   1789999999999998877642 11      1111 224567777764 78888888888999999999


Q ss_pred             CCCEEEEEecce----eEE--eecCCCCceeEEec------cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705          200 NEDFVVVCESWK----RYW--LKGDRAGILDAFIE------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       200 dg~~lyv~~~~~----~~~--i~~~~~~~~~~~~~------~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      |.+.+|+.++.+    .|.  ..+....+.+...+      ..+-.|||+++|.+|+|||++.++               
T Consensus       168 d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng---------------  232 (310)
T KOG4499|consen  168 DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG---------------  232 (310)
T ss_pred             cCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC---------------
Confidence            999999999887    132  22222222222211      123479999999999999999863               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEec
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASL  331 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~  331 (351)
                                           +.|.++||.+||++..+--|    ...++++++.+   +.||+++.
T Consensus       233 ---------------------~~V~~~dp~tGK~L~eiklP----t~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  233 ---------------------GTVQKVDPTTGKILLEIKLP----TPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ---------------------cEEEEECCCCCcEEEEEEcC----CCceEEEEecCCCccEEEEEeh
Confidence                                 47999999999999988766    34688888765   56888774

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.60  E-value=9.4e-14  Score=123.94  Aligned_cols=176  Identities=20%  Similarity=0.351  Sum_probs=124.5

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec------CCccccceEEcCCCCEEEEeCCC---------CeE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGGVILCDNEK---------GLL  117 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~------~~~p~~gl~~d~~G~L~v~d~~~---------gl~  117 (351)
                      .|.+++++..++.+|++...+ +..+|+.+++++.+...      ..+|+ .+++|++|+||+++...         .++
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence            389999995679999998866 67779888988766432      34688 99999999999998642         488


Q ss_pred             EEcCCC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeE---EEee---c
Q 018705          118 KVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET---TVLH---E  187 (351)
Q Consensus       118 ~~~~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~~~---~  187 (351)
                      ++++++ .+.+......||+|++++|| .+|++++.                 .++|++|+.+  ++++   +.+.   .
T Consensus       119 ~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T PF08450_consen  119 RIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVFIDFPG  181 (246)
T ss_dssp             EEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred             EECCCCeEEEEecCcccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeEEEcCC
Confidence            888778 66666666899999999999 58999976                 4689998764  3322   2232   1


Q ss_pred             CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCC-CCCCceEEC-CC-CCEEEEEe
Q 018705          188 GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP-GGPDNINLA-PD-GSFWIGLI  250 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d-~~-G~lwva~~  250 (351)
                      ....|+|++++.+|+ ||++...+ +++.-++. |+....+ .+| ..|.++++. ++ +.|||++.
T Consensus       182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i-~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI-ELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE-E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE-cCCCCCEEEEEEECCCCCEEEEEeC
Confidence            223699999999997 99998755 55544443 5533222 233 367889983 44 56999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.56  E-value=4.1e-12  Score=119.96  Aligned_cols=164  Identities=21%  Similarity=0.252  Sum_probs=115.3

Q ss_pred             ceEecC-CCcCCCceEEEeeCCCeEEEEEc------------CC-EEEEEEcCC--Ce---EEEEeecCCccccceEEcC
Q 018705           43 LTKLGE-GCVNHPEDVSVVVSKGALYTATR------------DG-WVKYFILHN--ET---LVNWKHIDSQSLLGLTTTK  103 (351)
Q Consensus        43 ~~~i~~-~~~~~pe~i~~d~~~g~lyv~~~------------~g-~I~~~d~~~--g~---~~~~~~~~~~p~~gl~~d~  103 (351)
                      +++++. ..+..|.+|++| .+|++||+..            .+ +|++++..+  |+   .+.+......|. ||++.+
T Consensus         4 ~~l~A~~p~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~   81 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAV   81 (367)
T ss_pred             EEEEECCCccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEec
Confidence            445554 357899999999 6899999852            23 899997543  43   355555566789 999999


Q ss_pred             CCCEEEEeCCCCeEEEc-C------CC-eEEecCCC--------CCcccEEEccCCcEEEEeCCCc--cCCccccccccc
Q 018705          104 DGGVILCDNEKGLLKVT-E------EG-VEAIVPDA--------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAE  165 (351)
Q Consensus       104 ~G~L~v~d~~~gl~~~~-~------~g-~~~l~~~~--------~~~n~l~~d~dG~ly~t~~~~~--~~~~~~~~~~~~  165 (351)
                      +| |||++.. .++++. .      ++ .+++.+..        ..++++++++||.|||++....  ............
T Consensus        82 ~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~  159 (367)
T TIGR02604        82 GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESR  159 (367)
T ss_pred             CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcc
Confidence            99 9998754 688773 2      22 33343321        4588999999999999987421  111000001111


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ....|.+++++|++++.+.+..++.+|+|++++++|+ +|+++...
T Consensus       160 ~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~  204 (367)
T TIGR02604       160 QGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDD  204 (367)
T ss_pred             cccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCC
Confidence            2234789999999999999999999999999999998 89988754

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.56  E-value=1.9e-12  Score=136.29  Aligned_cols=182  Identities=14%  Similarity=0.195  Sum_probs=127.5

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeec-----------------CCccccceEEcC-CCCEEEEe
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----------------DSQSLLGLTTTK-DGGVILCD  111 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~-----------------~~~p~~gl~~d~-~G~L~v~d  111 (351)
                      +..|.+|++|++++.+||+.. +++|.++|..++.++++...                 ...|. ++++|+ +|.+||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            567999999976778898665 56799999878877665321                 23688 999998 67999999


Q ss_pred             CCCC-eEEEcC-CC-eEEecCC---------------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceE
Q 018705          112 NEKG-LLKVTE-EG-VEAIVPD---------------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (351)
Q Consensus       112 ~~~g-l~~~~~-~g-~~~l~~~---------------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l  172 (351)
                      ..++ +++++. ++ ...+...               ...|++|+++++|. ||+++..                 +++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence            7654 555564 55 5443211               15799999999985 9999975                 4578


Q ss_pred             EEEeCCCCeEEEeec----------------------CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-
Q 018705          173 RKYDPKLKETTVLHE----------------------GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE-  228 (351)
Q Consensus       173 ~~~d~~~~~~~~~~~----------------------~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~-  228 (351)
                      .+||++++..+.+..                      .+..|.||+++++|+ +||+++.+ ++.+-+...+....+.. 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            888887665443221                      134789999999998 99999877 55443332233222211 


Q ss_pred             cC------------CCCCCceEECCCCCEEEEEec
Q 018705          229 NL------------PGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       229 ~~------------~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +.            -..|.++++|++|++||+...
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            10            125889999999999999754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=5.8e-10  Score=104.53  Aligned_cols=246  Identities=19%  Similarity=0.293  Sum_probs=150.0

Q ss_pred             cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc----CCEEEEE--EcCCCeEEEEe---ecCCccccceEEcCCCC-E
Q 018705           38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR----DGWVKYF--ILHNETLVNWK---HIDSQSLLGLTTTKDGG-V  107 (351)
Q Consensus        38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~----~g~I~~~--d~~~g~~~~~~---~~~~~p~~gl~~d~~G~-L  107 (351)
                      ..|...+.+..  ...|..++++++++.||+...    .|.|..+  +.++|+++...   ..+..|. .+++|++|+ |
T Consensus        25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l  101 (345)
T PF10282_consen   25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFL  101 (345)
T ss_dssp             TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEE
T ss_pred             CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEE
Confidence            45555555444  468999999988899999876    4677555  55447765542   3456788 999999985 7


Q ss_pred             EEEeCCCCeE---EEcCCC-eEEe---c-C----------CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccC
Q 018705          108 ILCDNEKGLL---KVTEEG-VEAI---V-P----------DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus       108 ~v~d~~~gl~---~~~~~g-~~~l---~-~----------~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      |+++...+-+   .++.+| +...   . .          ....|-.+.++|||+ +|++|-+                 
T Consensus       102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------  164 (345)
T PF10282_consen  102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------  164 (345)
T ss_dssp             EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------
T ss_pred             EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------
Confidence            8888766543   334456 3221   1 0          115677899999985 8888865                 


Q ss_pred             CceEEEEeCC--CCeEEE----eecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEE--eccCC----C
Q 018705          169 YGQLRKYDPK--LKETTV----LHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAF--IENLP----G  232 (351)
Q Consensus       169 ~g~l~~~d~~--~~~~~~----~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~--~~~~~----g  232 (351)
                      ..+|+.|+.+  ++++..    .......|..++|+||++++|+.....    .|.+.. ..+..+..  ...++    +
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~  243 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFTG  243 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEESCETTSCS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc-cCCceeEEEEeeeccccccc
Confidence            3466666543  333433    224456799999999999999976544    455542 12332221  11111    1


Q ss_pred             --CCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEE--EEEEC
Q 018705          233 --GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII--RDFND  307 (351)
Q Consensus       233 --~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~--~~~~~  307 (351)
                        .+.+|+++++|+ ||++.-..                                  ..-.++.+|+++|+..  ..+..
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr~~----------------------------------~sI~vf~~d~~~g~l~~~~~~~~  289 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNRGS----------------------------------NSISVFDLDPATGTLTLVQTVPT  289 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEECTT----------------------------------TEEEEEEECTTTTTEEEEEEEEE
T ss_pred             cCCceeEEEecCCCEEEEEeccC----------------------------------CEEEEEEEecCCCceEEEEEEeC
Confidence              356789999997 78876431                                  1124666766456542  23332


Q ss_pred             CCCCcccceeEEEE--ECCEEEEEecCCCeEEEEeCC
Q 018705          308 PDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       308 ~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~~~  342 (351)
                       .|.   .+..+..  ++..||+++-.++.|.+|+..
T Consensus       290 -~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  290 -GGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             -SSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             -CCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence             232   3455554  567899999999999999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.36  E-value=1.5e-09  Score=101.18  Aligned_cols=247  Identities=15%  Similarity=0.174  Sum_probs=146.6

Q ss_pred             cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEEEEe--ecCCccccceEEcCCCC-EEEEeC
Q 018705           38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLVNWK--HIDSQSLLGLTTTKDGG-VILCDN  112 (351)
Q Consensus        38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~d~  112 (351)
                      ..+..++.+..+  ..|..++++|++..||++.. +++|..|+.+ +|+++...  ...+.|. +++++++|+ ||++..
T Consensus        23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~   99 (330)
T PRK11028         23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASY   99 (330)
T ss_pred             CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEc
Confidence            455566666553  56899999988888999764 6778766653 45554322  2345788 999999996 777775


Q ss_pred             CCCe-EEEc--CCC-e-EEec--CCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEE
Q 018705          113 EKGL-LKVT--EEG-V-EAIV--PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETT  183 (351)
Q Consensus       113 ~~gl-~~~~--~~g-~-~~l~--~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~  183 (351)
                      ..+. ..++  .+| . +...  .....|..++++|+| .+|+++..                 .+.|..||.++ +.+.
T Consensus       100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~  162 (330)
T PRK11028        100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLV  162 (330)
T ss_pred             CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCccc
Confidence            5443 3332  345 2 2221  112468889999998 57777754                 45777777654 3322


Q ss_pred             E------eecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEec--cCC------CCCCceEECCCCC-
Q 018705          184 V------LHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIE--NLP------GGPDNINLAPDGS-  244 (351)
Q Consensus       184 ~------~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~--~~~------g~pd~i~~d~~G~-  244 (351)
                      .      -......|.+++++|||+++|+++...    .|.+... .++.+....  ..|      .++..+.++++|+ 
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            1      112345789999999999999987633    3444421 222222111  111      1334588899997 


Q ss_pred             EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE-CCCCCcccceeEEE--E
Q 018705          245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-DPDATYISFVTSAA--E  321 (351)
Q Consensus       245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~--~  321 (351)
                      +|++....+                                  .-.++.++. ++.....+. .+.+.   ....+.  .
T Consensus       242 lyv~~~~~~----------------------------------~I~v~~i~~-~~~~~~~~~~~~~~~---~p~~~~~~~  283 (330)
T PRK11028        242 LYACDRTAS----------------------------------LISVFSVSE-DGSVLSFEGHQPTET---QPRGFNIDH  283 (330)
T ss_pred             EEEecCCCC----------------------------------eEEEEEEeC-CCCeEEEeEEEeccc---cCCceEECC
Confidence            788743211                                  124566676 553332221 11221   122233  3


Q ss_pred             ECCEEEEEecCCCeEEEEeCCC
Q 018705          322 FDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       322 ~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      ++..||+++...+.|..+++..
T Consensus       284 dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        284 SGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCEEEEEEccCCcEEEEEEcC
Confidence            4678999988788899988753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=6.2e-08  Score=87.15  Aligned_cols=251  Identities=17%  Similarity=0.193  Sum_probs=150.5

Q ss_pred             CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcC---CEE--EEEEcCCCeEEEEe---ecCCccccceEEcCCCC-E
Q 018705           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD---GWV--KYFILHNETLVNWK---HIDSQSLLGLTTTKDGG-V  107 (351)
Q Consensus        37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~---g~I--~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~-L  107 (351)
                      ...++..+++..  ...|.-++++++...||+...+   |+|  +++|+++|+++...   ..+..|. -+++|++|+ |
T Consensus        27 ~g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~v  103 (346)
T COG2706          27 TGELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFV  103 (346)
T ss_pred             ccccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEE
Confidence            345666676765  5789999999877799997654   555  56777678886553   2334457 899999996 6


Q ss_pred             EEEeCCCCeEEEc---CCC-eEEe----cCCC---------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCC
Q 018705          108 ILCDNEKGLLKVT---EEG-VEAI----VPDA---------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPY  169 (351)
Q Consensus       108 ~v~d~~~gl~~~~---~~g-~~~l----~~~~---------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~  169 (351)
                      +++....|.+.+.   .+| +...    ....         ..+-...++|+|+ ++++|-+                 .
T Consensus       104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~  166 (346)
T COG2706         104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------T  166 (346)
T ss_pred             EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------C
Confidence            6777777766665   356 3221    1110         2255567899995 5555533                 3


Q ss_pred             ceEEEEeCCCCeEEEe----ecCccccceEEEcCCCCEEEE-Eecce---eEEeecCCCCceeEEec--cCC----CC--
Q 018705          170 GQLRKYDPKLKETTVL----HEGFYFANGIALSKNEDFVVV-CESWK---RYWLKGDRAGILDAFIE--NLP----GG--  233 (351)
Q Consensus       170 g~l~~~d~~~~~~~~~----~~~~~~~ngi~~~~dg~~lyv-~~~~~---~~~i~~~~~~~~~~~~~--~~~----g~--  233 (351)
                      .+++.|+.+.|.++..    ......|.-|+|+|+++..|+ +|-++   .+..+ +..++.+.+..  -+|    |.  
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~-~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN-PAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc-CCCceEEEeeeeccCccccCCCCc
Confidence            4777776665655432    244567889999999999998 55555   23333 22455443321  122    11  


Q ss_pred             CCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE--ECCCC
Q 018705          234 PDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF--NDPDA  310 (351)
Q Consensus       234 pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~--~~~~g  310 (351)
                      .-.|.++++|+ ||++. .+-                                 ..=.++++|+ ++..++-.  ...+|
T Consensus       246 ~aaIhis~dGrFLYasN-Rg~---------------------------------dsI~~f~V~~-~~g~L~~~~~~~teg  290 (346)
T COG2706         246 AAAIHISPDGRFLYASN-RGH---------------------------------DSIAVFSVDP-DGGKLELVGITPTEG  290 (346)
T ss_pred             eeEEEECCCCCEEEEec-CCC---------------------------------CeEEEEEEcC-CCCEEEEEEEeccCC
Confidence            12367899998 55543 210                                 0115788899 64434332  22233


Q ss_pred             CcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          311 TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       311 ~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      . .+.--.+...++.|++..=.++-|.+|.....
T Consensus       291 ~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         291 Q-FPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             c-CCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            2 22222333445677777777777888876554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=5.6e-09  Score=95.37  Aligned_cols=174  Identities=20%  Similarity=0.286  Sum_probs=113.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEee-----cCCccccceEEcCCCCEEEEeCC-----C-------C
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH-----IDSQSLLGLTTTKDGGVILCDNE-----K-------G  115 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~-----~~~~p~~gl~~d~~G~L~v~d~~-----~-------g  115 (351)
                      +....++ ++++|++... | +.+++.+++.. +.+..     ...+|+ ...++++|++|+++..     .       .
T Consensus        69 ~~~~~~d-~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~~~~r~N-D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~  144 (307)
T COG3386          69 SSGALID-AGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGLPLNRPN-DGVVDPDGRIWFGDMGYFDLGKSEERPTGS  144 (307)
T ss_pred             ccceeec-CCCeEEEEcc-c-cEEEeccCCceeEEeccccCCCCcCCCC-ceeEcCCCCEEEeCCCccccCccccCCcce
Confidence            5566666 5666665433 3 56666555555 44432     235788 9999999999999987     2       2


Q ss_pred             eEEEcCCC-eEEecCC-CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeE----EEee
Q 018705          116 LLKVTEEG-VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET----TVLH  186 (351)
Q Consensus       116 l~~~~~~g-~~~l~~~-~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~----~~~~  186 (351)
                      +|++++.| .+.+... ...+|+|+++||| .+|++|+.                 .+++++|+-+  ++.+    ..+.
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-----------------~~~i~r~~~d~~~g~~~~~~~~~~  207 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-----------------ANRIHRYDLDPATGPIGGRRGFVD  207 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-----------------CCeEEEEecCcccCccCCcceEEE
Confidence            89999866 5544444 6899999999999 79999986                 3578887543  1211    1121


Q ss_pred             c--CccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCC-CCCCceEECC-C-CCEEEEEec
Q 018705          187 E--GFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLP-GGPDNINLAP-D-GSFWIGLIK  251 (351)
Q Consensus       187 ~--~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d~-~-G~lwva~~~  251 (351)
                      .  .-..|+|++++.+|+ +|++...+  ++..-.+. |+....+ .+| ..|.+.++-. + ..|||+...
T Consensus       208 ~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         208 FDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEI-KLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             ccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEE-ECCCCCCccceEeCCCcCEEEEEecC
Confidence            1  235799999999998 88654443  44444343 3332222 345 5678888743 3 359999765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.17  E-value=1.9e-07  Score=84.73  Aligned_cols=236  Identities=12%  Similarity=0.068  Sum_probs=141.1

Q ss_pred             CCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eE
Q 018705           52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~  125 (351)
                      ..|.+++++++++.+|+. ..++.|..+|..+++..........+. .++++++|+ +|++....+ +..++. ++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            457889999777778764 567889999987776644323334567 889999986 666654434 444553 33  33


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      .+... ..+.+++++++|.++++....                ...+..||..+++..........|.+++++++++.+|
T Consensus       110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  172 (300)
T TIGR03866       110 EIPVG-VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW  172 (300)
T ss_pred             EeeCC-CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence            33322 457899999999876655420                1245667877665533222234678899999999887


Q ss_pred             EEec-ceeEEeecCCCCce-eEEeccC------CCCCCceEECCCCCE-EEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705          206 VCES-WKRYWLKGDRAGIL-DAFIENL------PGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGL  276 (351)
Q Consensus       206 v~~~-~~~~~i~~~~~~~~-~~~~~~~------~g~pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      ++.. .+.+.+-+...++. ..+....      ...|.+++++++|+. |++...                         
T Consensus       173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-------------------------  227 (300)
T TIGR03866       173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-------------------------  227 (300)
T ss_pred             EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-------------------------
Confidence            7653 33222212111221 1111011      113557889999974 666432                         


Q ss_pred             hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705          277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                                 ...+..+|.++++.+..+... +    .+..+..  .+..||+++...+.|.++++.+.+.
T Consensus       228 -----------~~~i~v~d~~~~~~~~~~~~~-~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       228 -----------ANRVAVVDAKTYEVLDYLLVG-Q----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             -----------CCeEEEEECCCCcEEEEEEeC-C----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence                       124677787566666554321 1    2334443  4557888766678899999887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.16  E-value=2.5e-07  Score=83.94  Aligned_cols=163  Identities=13%  Similarity=0.209  Sum_probs=100.3

Q ss_pred             eEE-EEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eEEecCCCCCcccEE
Q 018705           65 ALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        65 ~ly-v~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~~l~~~~~~~n~l~  138 (351)
                      .+| ++..++.|.++|..+++..........+. +++++++|+ +|++....+ ++.++. ++  ...+... ..+..++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEE
Confidence            344 45568899999987776543333345577 999999996 667655444 445553 45  3333322 3467789


Q ss_pred             EccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEe
Q 018705          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       139 ~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i  215 (351)
                      ++++|+ +|++...                 .+.+..||..+++..........+.+++++|+|+.++++....  .+++
T Consensus        80 ~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        80 LHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             ECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            999986 6666543                 3579999987665433233334578999999999777766543  3343


Q ss_pred             ecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705          216 KGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG  248 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva  248 (351)
                      +.. .++..... .....|..+.++++|. +|++
T Consensus       143 d~~-~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866       143 DTK-TYEIVDNV-LVDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             eCC-CCeEEEEE-EcCCCccEEEECCCCCEEEEE
Confidence            322 22221111 1123467788999997 4454

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.14  E-value=1.9e-09  Score=101.92  Aligned_cols=228  Identities=16%  Similarity=0.164  Sum_probs=138.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP  129 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~  129 (351)
                      -..+.+| ..|.+|+++.+| ++++|..+++.-.......  ..+ .+..|..|+|||++. +|++..++.|  ..-...
T Consensus       167 V~aLv~D-~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~~  242 (671)
T COG3292         167 VVALVFD-ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRASNWGP  242 (671)
T ss_pred             ceeeeee-ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhccccccCC
Confidence            4578898 789999999998 9999998887654433222  245 788899999999984 6899988766  332222


Q ss_pred             CC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee----cCccccceEEEcCCCCE
Q 018705          130 DA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EGFYFANGIALSKNEDF  203 (351)
Q Consensus       130 ~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngi~~~~dg~~  203 (351)
                      ..  ..+..+..|.+|.+||.+..                   +++++..+.+.+....    .+....|++..+.||+ 
T Consensus       243 ~lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-  302 (671)
T COG3292         243 MLPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-  302 (671)
T ss_pred             CCcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-
Confidence            21  56777888999999998753                   4666654434333221    1234567888999998 


Q ss_pred             EEEEecceeEEeecCCCCceeEEeccCCCCCCc-eEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          204 VVVCESWKRYWLKGDRAGILDAFIENLPGGPDN-INLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       204 lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~-i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      ||+.+..+..++....-.....+. ..+|.... .+..+.+--|.....                               
T Consensus       303 LWv~t~~giv~~~~a~w~~ma~in-~~dG~v~~~~~~a~~ll~~~v~~~-------------------------------  350 (671)
T COG3292         303 LWVGTYGGIVRYLTADWKRMAVIN-DSDGGVSQYEAVAPALLSWGVRQL-------------------------------  350 (671)
T ss_pred             EeeeccCceEEEecchhhheeeee-cCCCchhhhhccCchhcccceeec-------------------------------
Confidence            999887763332211110111111 11111100 111221111222111                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                         .+.+.+...++.+|.+..+.+.-.+   .+++.++++ ++.+|+|+. ++++.|++..+.
T Consensus       351 ---ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g~lWlgs~-q~GLsrl~n~n~  406 (671)
T COG3292         351 ---NSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRGRLWLGSM-QNGLSRLDNKNE  406 (671)
T ss_pred             ---cccceEEEecCCCCcEEEEeeeccc---cccchhhhccCCcEEEEec-ccchhhhccCCc
Confidence               1223455566668888877654333   256666644 689999998 678999987763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.12  E-value=2.6e-07  Score=86.61  Aligned_cols=226  Identities=20%  Similarity=0.268  Sum_probs=135.2

Q ss_pred             eEEEEEcC----CEEEEEE--cCCCeEEEEe--ecCCccccceEEcCCC-CEEEEeCC---C-Ce--EEEcCC-C-eEEe
Q 018705           65 ALYTATRD----GWVKYFI--LHNETLVNWK--HIDSQSLLGLTTTKDG-GVILCDNE---K-GL--LKVTEE-G-VEAI  127 (351)
Q Consensus        65 ~lyv~~~~----g~I~~~d--~~~g~~~~~~--~~~~~p~~gl~~d~~G-~L~v~d~~---~-gl--~~~~~~-g-~~~l  127 (351)
                      .+|+|+..    +.|+.+.  .++++++...  ....+|. -|++++++ .||+++..   . ++  ++++++ | ++.+
T Consensus         1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen    1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred             CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence            36787765    5676664  4778775443  3557788 99999887 58888763   2 34  444455 6 5554


Q ss_pred             cC---CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEee--------------cC
Q 018705          128 VP---DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLH--------------EG  188 (351)
Q Consensus       128 ~~---~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~--------------~~  188 (351)
                      ..   ....|-.++++++|+ +|+++..                 .|.+..|+.+. |.+....              ..
T Consensus        80 ~~~~~~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~  142 (345)
T PF10282_consen   80 NSVPSGGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE  142 (345)
T ss_dssp             EEEEESSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred             eeeccCCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence            32   226788899999985 7777643                 35555554332 4443321              12


Q ss_pred             ccccceEEEcCCCCEEEEEecce-e---EEeecCCCCcee---EEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhh
Q 018705          189 FYFANGIALSKNEDFVVVCESWK-R---YWLKGDRAGILD---AFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAI  260 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~-~---~~i~~~~~~~~~---~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~  260 (351)
                      ..+|..+.++|||+++|+++.+. +   |.++.. .+..+   .+.-.....|+.++++++|+ +||.....        
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~-~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--------  213 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD-TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--------  213 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT-S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--------
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCC-CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--------
Confidence            35688999999999999999877 4   444332 22221   11112223588999999986 88876432        


Q ss_pred             hcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeE--EEEEEC-CCCCcc-cceeEEEEE--CCEEEEEecCCC
Q 018705          261 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFND-PDATYI-SFVTSAAEF--DGNLYLASLQSN  334 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~-~~g~~~-~~~~~~~~~--~g~L~ig~~~~~  334 (351)
                                                ..-.++.+++++|+.  +..+.. +.+... .....+...  +..||+++...+
T Consensus       214 --------------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  214 --------------------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             --------------------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             --------------------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence                                      123466677436643  233332 222111 245555554  568999999999


Q ss_pred             eEEEEeCCC
Q 018705          335 FIGILPLDG  343 (351)
Q Consensus       335 ~i~~~~~~~  343 (351)
                      .|..|++..
T Consensus       268 sI~vf~~d~  276 (345)
T PF10282_consen  268 SISVFDLDP  276 (345)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEEec
Confidence            999999854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.11  E-value=2.4e-08  Score=90.78  Aligned_cols=178  Identities=18%  Similarity=0.218  Sum_probs=111.2

Q ss_pred             cccceEEcCCCCEEEEeCCC-------------CeEEEc-CCC--eEEec--CC----CCCcccEEEccC------CcEE
Q 018705           95 SLLGLTTTKDGGVILCDNEK-------------GLLKVT-EEG--VEAIV--PD----ASFTNDVIAASD------GTLY  146 (351)
Q Consensus        95 p~~gl~~d~~G~L~v~d~~~-------------gl~~~~-~~g--~~~l~--~~----~~~~n~l~~d~d------G~ly  146 (351)
                      ++ ++.+|+.|+|||.|.+.             .|+.++ .++  ++++.  ..    ..+.+++++|..      +.+|
T Consensus         3 V~-~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQ-RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EE-EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cc-EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            34 88999999999998662             477777 344  45442  21    178999999972      5799


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--------------------cccceEEEcC---CCCE
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------------------YFANGIALSK---NEDF  203 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------------------~~~ngi~~~~---dg~~  203 (351)
                      +||.+                 .++|..||..+++..++....                    ....||++++   |+++
T Consensus        82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~  144 (287)
T PF03022_consen   82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW  144 (287)
T ss_dssp             EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred             EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence            99986                 346777777776665543221                    1245788876   8889


Q ss_pred             EEEEecce--eEEeec-----CCCC-------ceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHH
Q 018705          204 VVVCESWK--RYWLKG-----DRAG-------ILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  269 (351)
Q Consensus       204 lyv~~~~~--~~~i~~-----~~~~-------~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~  269 (351)
                      ||++...+  .|.+..     ....       .++.+. ..++..+|+++|++|+||.+....                 
T Consensus       145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~-----------------  206 (287)
T PF03022_consen  145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ-----------------  206 (287)
T ss_dssp             EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC-----------------
T ss_pred             EEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC-----------------
Confidence            99988665  566652     1111       122222 223456899999999999997542                 


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEECCCC-----eEEEEEECCCCCcccceeEEEEEC---CEEEEEe
Q 018705          270 LDAYPGLISLLLPMGSDAGARVVKVDGNDG-----KIIRDFNDPDATYISFVTSAAEFD---GNLYLAS  330 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~  330 (351)
                                         ..|.++++ ++     +....+++++.  ..++.++...+   |.||+-+
T Consensus       207 -------------------~aI~~w~~-~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  207 -------------------NAIGCWDP-DGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -------------------TEEEEEET-TTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE
T ss_pred             -------------------CeEEEEeC-CCCcCccchheeEEcCce--eeccceeeeccccCceEEEEE
Confidence                               47999999 77     44344566553  34677777655   9999987

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.08  E-value=1e-07  Score=88.79  Aligned_cols=180  Identities=11%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEE-EEe--ecCCccccceEEcCCC-CEEEEeCCCCeEEEc---CC
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV-NWK--HIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT---EE  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~-~~~--~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~---~~  122 (351)
                      ..|..++++++++.+|++.. ++.|..++.+ ++... ...  .....|+ +++++++| .+|+++...+.+.+.   .+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            36899999988888998764 7788888764 23221 111  1224578 99999998 477888775544443   23


Q ss_pred             C-eEE-----ec-CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEE--eCCCCeEEEeec-----
Q 018705          123 G-VEA-----IV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY--DPKLKETTVLHE-----  187 (351)
Q Consensus       123 g-~~~-----l~-~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~~~~~~~~~~-----  187 (351)
                      | +..     .. .....|+++++++||+ +|+++..                 .+.|..|  +..+++.+.+..     
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            4 321     11 1116799999999985 7777653                 3455554  433444433221     


Q ss_pred             ----CccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-EEEEEe
Q 018705          188 ----GFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       188 ----~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                          +...+.+|+++||++++|+++...    .+.+.. ..+..+.... .....|.++.++++|+ ||++..
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~-~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE-DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC-CCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence                112344699999999999986543    333432 1122221111 1123588999999996 777653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.95  E-value=5.3e-08  Score=92.03  Aligned_cols=137  Identities=14%  Similarity=0.196  Sum_probs=93.3

Q ss_pred             CCccccceEEcCCCCEEEEeCC-------------CCeEEEcC---CC----eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705           92 DSQSLLGLTTTKDGGVILCDNE-------------KGLLKVTE---EG----VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus        92 ~~~p~~gl~~d~~G~L~v~d~~-------------~gl~~~~~---~g----~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      -..|. +|++|++|+|||++..             ..++++..   +|    .+++++....|+++++.++| +|+++..
T Consensus        13 ~~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~   90 (367)
T TIGR02604        13 LRNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPP   90 (367)
T ss_pred             cCCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCC
Confidence            36788 9999999999999741             14666653   45    25667777889999999999 9998753


Q ss_pred             CccCCcccccccccccCCceEEEE-eCCC-----CeEEEeecCc--------cccceEEEcCCCCEEEEEecce------
Q 018705          152 TKYTPTDFYKDMAEGKPYGQLRKY-DPKL-----KETTVLHEGF--------YFANGIALSKNEDFVVVCESWK------  211 (351)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~~~-d~~~-----~~~~~~~~~~--------~~~ngi~~~~dg~~lyv~~~~~------  211 (351)
                                         .|++| +.+.     ++.+.+..++        ..++++++.+||. ||++....      
T Consensus        91 -------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~  150 (367)
T TIGR02604        91 -------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVT  150 (367)
T ss_pred             -------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceec
Confidence                               57766 3221     1334444332        3488999999997 99966521      


Q ss_pred             --------------eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          212 --------------RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       212 --------------~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                                    .++.-++..++.++++..+ ..|.|+++|++|++|++...
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence                          1111123334566666543 25789999999999998763

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=2.2e-06  Score=81.39  Aligned_cols=239  Identities=15%  Similarity=0.162  Sum_probs=149.2

Q ss_pred             CCCceEEEeeCCCeEEEEEcCC-EEEEEEcCCCeEEEEeecC-CccccceEEcCCCC-EEEEeCCC-CeEEEc-C-CC-e
Q 018705           52 NHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEK-GLLKVT-E-EG-V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g-~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~d~~~-gl~~~~-~-~g-~  124 (351)
                      ..|.+++.++++..+|+..... .+..++........+...+ ..|. ++++++.|. +|+.+... .+..++ . .. .
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence            3799999997777888876533 4666665433333433334 6788 999998885 99988663 455555 2 22 3


Q ss_pred             EEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705          125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      +..... ..|.+++++++| .+|+++...               ..+.+..+|..++.+.........|.|++++|+|+.
T Consensus       110 ~~~~vG-~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~  173 (381)
T COG3391         110 GSIPVG-LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK  173 (381)
T ss_pred             eEeeec-cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence            332222 489999999998 899999741               146899999988877655444457899999999999


Q ss_pred             EEEEecce-eEEeecCCCCcee-EE---eccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchh
Q 018705          204 VVVCESWK-RYWLKGDRAGILD-AF---IENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  277 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~-~~---~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                      +|+++... ++.+-+....... ..   .......|.++.++++|+ +|++....                         
T Consensus       174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-------------------------  228 (381)
T COG3391         174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-------------------------  228 (381)
T ss_pred             EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC-------------------------
Confidence            99998544 4443322111111 00   012234688999999997 89987542                         


Q ss_pred             hcccCCCCCCceEEEEEECCCCeEEEE-EECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          278 SLLLPMGSDAGARVVKVDGNDGKIIRD-FNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       278 ~~~~~~~~~~~~~v~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                               ....+.++|..+++.... +....+  ......+...+...|+.....+.+..++.+.
T Consensus       229 ---------~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         229 ---------GSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             ---------CCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence                     123577777744554443 222111  1111222345566777766566677666554

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.93  E-value=2.9e-08  Score=94.08  Aligned_cols=188  Identities=18%  Similarity=0.196  Sum_probs=106.3

Q ss_pred             EEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe--ecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CCeEE-ecC--
Q 018705           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EGVEA-IVP--  129 (351)
Q Consensus        57 i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g~~~-l~~--  129 (351)
                      ++.| ..+.+|||+.+| +++.++.+-++..+.  .+.++.. -+.-|++|.+|+++. +|+.++. + .++.. ..+  
T Consensus       211 l~~d-~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~~~~~  286 (671)
T COG3292         211 LIAD-VQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPLSKMH  286 (671)
T ss_pred             HHHH-hcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCccccccccC
Confidence            4445 578899999888 888887543332221  1234455 677889999999985 4677666 4 44322 211  


Q ss_pred             -CCCCcccEEEccCCcEEEEeCCCc--cCCcccc------------------------cccccccCCceEEEEeCCCCeE
Q 018705          130 -DASFTNDVIAASDGTLYFTVASTK--YTPTDFY------------------------KDMAEGKPYGQLRKYDPKLKET  182 (351)
Q Consensus       130 -~~~~~n~l~~d~dG~ly~t~~~~~--~~~~~~~------------------------~~~~~~~~~g~l~~~d~~~~~~  182 (351)
                       ....+|++..|.+|.+|+++....  |...+|.                        ..++.....|.+...++++|..
T Consensus       287 l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~  366 (671)
T COG3292         287 LGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGEL  366 (671)
T ss_pred             CccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcE
Confidence             227789999999999999886532  2211111                        0122223334456667776664


Q ss_pred             EEeecCc--cccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCC-CCceEECCCCCEEEEEec
Q 018705          183 TVLHEGF--YFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGG-PDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       183 ~~~~~~~--~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~-pd~i~~d~~G~lwva~~~  251 (351)
                      -......  ....-.+++.+|. +|+.+..+   |+.-.  ..+..--...+++.. ..-+..|++++||+++..
T Consensus       367 v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~--n~~avlde~agl~ss~V~aived~dnsLWIGTs~  438 (671)
T COG3292         367 VRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNK--NEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSG  438 (671)
T ss_pred             EEEeeeccccccchhhhccCCc-EEEEecccchhhhccC--CcccccccccCCcccceeeeeecCCCCEEEeccC
Confidence            3322222  2222345666665 99988774   44322  111111111122211 233667999999999754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.8e-06  Score=77.83  Aligned_cols=196  Identities=19%  Similarity=0.248  Sum_probs=119.4

Q ss_pred             cCccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEE----EEeecCC---------ccccceEEc
Q 018705           38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV----NWKHIDS---------QSLLGLTTT  102 (351)
Q Consensus        38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~----~~~~~~~---------~p~~gl~~d  102 (351)
                      .+|+-+-..... ...|..+++|+++..+|++.. .|.|.++-.+ +|.+.    ...+.+.         .++ ...++
T Consensus        76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~t  153 (346)
T COG2706          76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFT  153 (346)
T ss_pred             CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeC
Confidence            456555444333 356789999976678898875 4555444332 35432    2222221         255 67788


Q ss_pred             CCCC-EEEEeCCC-CeEEEc-CCC-eEEec----CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEE
Q 018705          103 KDGG-VILCDNEK-GLLKVT-EEG-VEAIV----PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus       103 ~~G~-L~v~d~~~-gl~~~~-~~g-~~~l~----~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                      ++|+ |+++|-+. .++.++ .+| .+...    .....|..|++.|+|. .|+.+.-               ...=.++
T Consensus       154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~  218 (346)
T COG2706         154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVL  218 (346)
T ss_pred             CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEE
Confidence            9995 67777664 444444 366 33221    1127899999999996 5765532               1112477


Q ss_pred             EEeCCCCeEEEee------cCccccc---eEEEcCCCCEEEEEecce-eE---EeecCCCCceeEEec-cCCC-CCCceE
Q 018705          174 KYDPKLKETTVLH------EGFYFAN---GIALSKNEDFVVVCESWK-RY---WLKGDRAGILDAFIE-NLPG-GPDNIN  238 (351)
Q Consensus       174 ~~d~~~~~~~~~~------~~~~~~n---gi~~~~dg~~lyv~~~~~-~~---~i~~~~~~~~~~~~~-~~~g-~pd~i~  238 (351)
                      .||+..++++.+.      +++...+   -|.+++||++||+++.+. .+   .+. +..+..+.+.. ...| .|+.+.
T Consensus       219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~-~~~g~L~~~~~~~teg~~PR~F~  297 (346)
T COG2706         219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD-PDGGKLELVGITPTEGQFPRDFN  297 (346)
T ss_pred             EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc-CCCCEEEEEEEeccCCcCCccce
Confidence            8888777776653      2233333   488999999999998766 34   343 33444443321 2334 499999


Q ss_pred             ECCCCCEEEEEec
Q 018705          239 LAPDGSFWIGLIK  251 (351)
Q Consensus       239 ~d~~G~lwva~~~  251 (351)
                      +++.|++.++...
T Consensus       298 i~~~g~~Liaa~q  310 (346)
T COG2706         298 INPSGRFLIAANQ  310 (346)
T ss_pred             eCCCCCEEEEEcc
Confidence            9999997777654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.87  E-value=9e-07  Score=82.41  Aligned_cols=153  Identities=19%  Similarity=0.281  Sum_probs=95.1

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEee-------cCCccccceEEcCC----CCEEEEeCC------
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH-------IDSQSLLGLTTTKD----GGVILCDNE------  113 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~-------~~~~p~~gl~~d~~----G~L~v~d~~------  113 (351)
                      ..|.+|++.| +|.+||+...|+|++++. ++.. ..+..       ...-.. |++++++    +.||++-..      
T Consensus         2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    2 NNPRSMAFLP-DGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SSEEEEEEET-TSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCceEEEEeC-CCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCC
Confidence            5699999995 589999999999999994 5554 22221       112356 9999984    889997652      


Q ss_pred             ---CCeEEEc--CC-C----eEEe----cC---CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705          114 ---KGLLKVT--EE-G----VEAI----VP---DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (351)
Q Consensus       114 ---~gl~~~~--~~-g----~~~l----~~---~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (351)
                         ..++++.  .. .    .+.+    ..   ....-..|+++|||.||++.....-  .....+  .....|.|+|++
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~  154 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRID  154 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEE
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEec
Confidence               1455554  22 1    1222    11   1145566999999999999864211  011111  122367899999


Q ss_pred             CCCC-------------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          177 PKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       177 ~~~~-------------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      +++.             ..++++.++.+|.++++++....||++|.+.
T Consensus       155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            8643             3466788899999999999933599998654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.85  E-value=1.5e-06  Score=88.99  Aligned_cols=175  Identities=14%  Similarity=0.182  Sum_probs=112.4

Q ss_pred             CCceEEEeeCCCeEEEEEc-CCEEEEEEcCCC-----eEEEEe----------ecC-----------CccccceEEcCCC
Q 018705           53 HPEDVSVVVSKGALYTATR-DGWVKYFILHNE-----TLVNWK----------HID-----------SQSLLGLTTTKDG  105 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g-----~~~~~~----------~~~-----------~~p~~gl~~d~~G  105 (351)
                      ..--+|++|-+|.||++.. ..+|+|+..-.+     .++...          ..|           ..|- ||++|++|
T Consensus       408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g  486 (1899)
T KOG4659|consen  408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMG  486 (1899)
T ss_pred             ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCC
Confidence            3447899999999999765 567998853222     122221          112           2588 99999999


Q ss_pred             CEEEEeCCCCeEEEcCCC-eEEecCC--------------------CCCcccEEEcc-CCcEEEEeCCCccCCccccccc
Q 018705          106 GVILCDNEKGLLKVTEEG-VEAIVPD--------------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDM  163 (351)
Q Consensus       106 ~L~v~d~~~gl~~~~~~g-~~~l~~~--------------------~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~  163 (351)
                      .||++|. ..|..++.+| ++++...                    ..+|.+++++| |+.+|+-|..            
T Consensus       487 ~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------  553 (1899)
T KOG4659|consen  487 NLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------  553 (1899)
T ss_pred             cEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc------------
Confidence            9999995 4677788888 6665321                    06999999999 7899998754            


Q ss_pred             ccccCCceEEEEeCCCCeEEEee---------------------cCccccceEEEcCCCCEEEEEecce----eEEeecC
Q 018705          164 AEGKPYGQLRKYDPKLKETTVLH---------------------EGFYFANGIALSKNEDFVVVCESWK----RYWLKGD  218 (351)
Q Consensus       164 ~~~~~~g~l~~~d~~~~~~~~~~---------------------~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~  218 (351)
                             -|+++++. ++++...                     ..+..+..|+++++|. |||+|++.    |+..-+ 
T Consensus       554 -------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~-  623 (1899)
T KOG4659|consen  554 -------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS-  623 (1899)
T ss_pred             -------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec-
Confidence                   34444443 3333221                     1133466899999996 99999987    332211 


Q ss_pred             CCCceeEEec-------------------------cCCCCCCceEECCCCCEEEEEec
Q 018705          219 RAGILDAFIE-------------------------NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       219 ~~~~~~~~~~-------------------------~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +.|+.-+++.                         ..-..|..+++.++|.++||...
T Consensus       624 tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g  681 (1899)
T KOG4659|consen  624 TDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG  681 (1899)
T ss_pred             cCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence            1112111111                         00113666899999999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.82  E-value=1.4e-05  Score=70.54  Aligned_cols=176  Identities=17%  Similarity=0.255  Sum_probs=104.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      .-.++.++++++.++++..+|.|..|+..+++... ......... .+.+.++++ ++++...+.+..++. ++  ...+
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            34688999777888888889999999986664322 222223334 778888885 444444434444443 33  4444


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv  206 (351)
                      ......+.++.+.+++.++++...                 .+.+..||..+++...... .......+++++++..++.
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  152 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS  152 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence            433346788899998877776653                 4679999887555433332 2335678999999876655


Q ss_pred             Eecce--eEE-eecCCCCceeEEeccCCCCCCceEECCCCC-EEEEE
Q 018705          207 CESWK--RYW-LKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       207 ~~~~~--~~~-i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      +...+  ++| +...  .....+. ...+....+.++++|+ ++++.
T Consensus       153 ~~~~~~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         153 SSQDGTIKLWDLRTG--KCVATLT-GHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             EcCCCcEEEEEcccc--ccceeEe-cCccccceEEECCCcCEEEEec
Confidence            55344  333 2211  1112222 1222356678888885 55543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.81  E-value=1.2e-05  Score=71.10  Aligned_cols=224  Identities=16%  Similarity=0.158  Sum_probs=133.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEcC-CC--eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~~l~~  129 (351)
                      ..+.+.+.+..++++..+|.|..++..+++. ..+......+. .+.++++++++++....+ +..++. ++  ...+..
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence            3788886666888888899999999866433 33333334566 889998888887776344 444443 34  444433


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCCEEEEEe
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      ....+.++++++++.++++...                 .+.+..||..+++.... .........++++++++.++++.
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence            3356888999998877666542                 35788888765544332 22223567899999998787777


Q ss_pred             cceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          209 SWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       209 ~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ..+.+.+-+...++. ..+. ........+.+++++.++++...                                    
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------------  239 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSE------------------------------------  239 (289)
T ss_pred             CCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcC------------------------------------
Confidence            655222222111221 1111 12223456788888877776542                                    


Q ss_pred             ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC--CEEEEEecCCCeEEE
Q 018705          288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD--GNLYLASLQSNFIGI  338 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~--g~L~ig~~~~~~i~~  338 (351)
                      .+.+..++..+++....+..+..    .+..+....  ..|+.++. .+.+..
T Consensus       240 ~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~-d~~i~i  287 (289)
T cd00200         240 DGTIRVWDLRTGECVQTLSGHTN----SVTSLAWSPDGKRLASGSA-DGTIRI  287 (289)
T ss_pred             CCcEEEEEcCCceeEEEccccCC----cEEEEEECCCCCEEEEecC-CCeEEe
Confidence            13466777634676666653322    456665543  34554443 444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.7e-06  Score=82.16  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=122.8

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCC---CCeEEEcC-CC--
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE---KGLLKVTE-EG--  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~---~gl~~~~~-~g--  123 (351)
                      ..|.++++++.+..+|+... .+.|..+|..+.+.......+..|. +++++++| .+||++..   ..+..++. ++  
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            67899999977788999775 4789999965666655555666899 99999988 89999984   34556665 33  


Q ss_pred             eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-----eecCccccceEEE
Q 018705          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----LHEGFYFANGIAL  197 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~ngi~~  197 (351)
                      .+....+ ..|.+++++++|. +|+++..                 .+.|..+|.++..+..     ....+..|.++++
T Consensus       153 ~~~~~vG-~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v  214 (381)
T COG3391         153 TATIPVG-NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV  214 (381)
T ss_pred             EEEEecC-CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence            2222222 4689999999996 9999954                 4689999977655543     1334578999999


Q ss_pred             cCCCCEEEEEecce---eEEeecCCCCceeE--EeccCCCCCCceEECCCCC-EEEEE
Q 018705          198 SKNEDFVVVCESWK---RYWLKGDRAGILDA--FIENLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       198 ~~dg~~lyv~~~~~---~~~i~~~~~~~~~~--~~~~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      +++|+.+|+++..+   .....+...+....  ...... .|.++..+++|. +|++.
T Consensus       215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence            99999999988764   32222211222111  111222 578899999996 56653

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.78  E-value=7.4e-08  Score=88.09  Aligned_cols=142  Identities=16%  Similarity=0.208  Sum_probs=104.3

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCc----cccceEEcCCCCEEEEeCC------------
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQ----SLLGLTTTKDGGVILCDNE------------  113 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~----p~~gl~~d~~G~L~v~d~~------------  113 (351)
                      ...|-+|+++.++|.|||+.+--+++.+++.+++.+.... ..+.    .+ ++.++++|.+|++|+.            
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEee
Confidence            4679999999777899999887779999997776544322 2232    35 8889999999998854            


Q ss_pred             ------CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEe---CCCCe
Q 018705          114 ------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD---PKLKE  181 (351)
Q Consensus       114 ------~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d---~~~~~  181 (351)
                            ++++++|+ +. .+++.++..+||++++++|+. +.++.+.                 ..++.+|-   ++-|+
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~k~gt  255 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGPKAGT  255 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCCccCc
Confidence                  25777776 44 667777779999999999996 4555543                 23566663   44455


Q ss_pred             EEEeecCc-cccceEEEcCCCCEEEEEecce
Q 018705          182 TTVLHEGF-YFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       182 ~~~~~~~~-~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .+.+++++ .+|+-|..+++|+ .||+-...
T Consensus       256 ~EvFa~~LPG~PDNIR~~~~G~-fWVal~~~  285 (376)
T KOG1520|consen  256 SEVFAEGLPGYPDNIRRDSTGH-FWVALHSK  285 (376)
T ss_pred             hhhHhhcCCCCCcceeECCCCC-EEEEEecc
Confidence            57777754 5899999999998 88876443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=6.2e-06  Score=80.07  Aligned_cols=176  Identities=11%  Similarity=0.056  Sum_probs=105.4

Q ss_pred             ceEEEeeCCCeE-EEEEcCC--EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eE
Q 018705           55 EDVSVVVSKGAL-YTATRDG--WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE  125 (351)
Q Consensus        55 e~i~~d~~~g~l-yv~~~~g--~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~  125 (351)
                      .+..|+|++..+ |+...++  .|+.+|..+|+.+.+....+... ..++++||+ |+++....   .++.++. ++ .+
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~  299 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT  299 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence            367898777655 5554443  69999987887665544333334 678899996 65543222   4888875 55 66


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+..........++++||. |+++...               .....||++|.++++.+.+........+.+++|||+.+
T Consensus       300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        300 RITRHRAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEE
Confidence            5544333455678899985 6665432               01236999998888876654333333457899999988


Q ss_pred             EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705          205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG  248 (351)
Q Consensus       205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva  248 (351)
                      +++....   ++++-+...+..+.+...  .......++++|+ |+.+
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEE
Confidence            8865433   444433333444333321  1122346788886 4443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.77  E-value=8.8e-06  Score=79.61  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=131.3

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eE
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~  125 (351)
                      ...-.+++..|++..+-+|..||+|-.||...| -+.+|........ ++.+...|+..++..-.|.+|.+.  ..  .+
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            445568899988888889999999999998655 3566766656666 999999999999888888888773  33  56


Q ss_pred             EecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccc-cceEEEcCCCCE
Q 018705          126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF-ANGIALSKNEDF  203 (351)
Q Consensus       126 ~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~ngi~~~~dg~~  203 (351)
                      ++..+. ...+.+++||.|-+-++-+-..                =.|+.|+.+||+..-+..+-.. ..|++++++++.
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~d~----------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQDS----------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeeccce----------------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence            665443 5678899999998777654311                2689999999987665555444 468999999996


Q ss_pred             EEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhh
Q 018705          204 VVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGV  257 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~  257 (351)
                      |+-++.++  |+|-.=...++.|.+.-  ..-.-++.+.++|. |=|++..+....+
T Consensus       493 LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~  547 (893)
T KOG0291|consen  493 LASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFF  547 (893)
T ss_pred             EEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEE
Confidence            66666666  77743123345554431  11234567888885 8888766544433

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.77  E-value=3e-07  Score=90.34  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=118.7

Q ss_pred             CCCceEEEeeCCCe-EEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC--eE
Q 018705           52 NHPEDVSVVVSKGA-LYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~-lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g--~~  125 (351)
                      .-+.+|.+|-.+.. +|++.....|.+-....++-+.+. ..-..|- ||++|.-+ ++|.+|+...-+.+-. +|  .+
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence            45778899966654 577777777888877666665554 3446799 99999766 7999987654444443 66  33


Q ss_pred             E-ecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCC
Q 018705          126 A-IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNED  202 (351)
Q Consensus       126 ~-l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~  202 (351)
                      + +...+..|.+|++|+ .|+||+||+...               +-.|-+-++++...+++ -+.+..|||+.|+|..+
T Consensus      1104 vLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1104 VLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred             EEEeecccCcceEEeecccCceeecccccc---------------CCcceeeccCCccceEEeecccCCCCCceeCcccc
Confidence            3 445567899999999 679999998621               22344444443333333 46688999999999999


Q ss_pred             EEEEEecce-eEEeec-CCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          203 FVVVCESWK-RYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       203 ~lyv~~~~~-~~~i~~-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      .|-+.+.++ |+.-.. ...++..++. ++ .+|-++.-+.+. +|-+..
T Consensus      1169 ~LCWvDAGt~rleC~~p~g~gRR~i~~-~L-qYPF~itsy~~~-fY~TDW 1215 (1289)
T KOG1214|consen 1169 LLCWVDAGTKRLECTLPDGTGRRVIQN-NL-QYPFSITSYADH-FYHTDW 1215 (1289)
T ss_pred             eeeEEecCCcceeEecCCCCcchhhhh-cc-cCceeeeecccc-ceeecc
Confidence            777777776 543322 2234433332 33 378888877766 666643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=3.9e-05  Score=71.36  Aligned_cols=244  Identities=15%  Similarity=0.099  Sum_probs=134.4

Q ss_pred             CCeEEEEEcC-----CEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeC---------CCCeEEE-cC-CC--
Q 018705           63 KGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN---------EKGLLKV-TE-EG--  123 (351)
Q Consensus        63 ~g~lyv~~~~-----g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~---------~~gl~~~-~~-~g--  123 (351)
                      ..++||....     |+|+.+|.+++++..-...+.+|. ++ +++|| .||+|..         ....+.+ +. +.  
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence            4567775543     889999998888765556778899 86 99998 6999987         4444444 43 44  


Q ss_pred             eEEecCC-------CCCcccEEEccCC-cEEEEeCC--CccCC-----cccccc--------ccc-c-------cCCceE
Q 018705          124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVAS--TKYTP-----TDFYKD--------MAE-G-------KPYGQL  172 (351)
Q Consensus       124 ~~~l~~~-------~~~~n~l~~d~dG-~ly~t~~~--~~~~~-----~~~~~~--------~~~-~-------~~~g~l  172 (351)
                      ...+..+       ...++.+++++|| .+|+++..  .....     +....+        ++. .       -.+|++
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            3333321       1467799999999 58887732  11000     010000        110 0       112222


Q ss_pred             EEE--eCCCCeEEE----eecC-----ccccceEEEcC-CCCEEEEEecceeEEee--cCCC---CceeEEecc-C--CC
Q 018705          173 RKY--DPKLKETTV----LHEG-----FYFANGIALSK-NEDFVVVCESWKRYWLK--GDRA---GILDAFIEN-L--PG  232 (351)
Q Consensus       173 ~~~--d~~~~~~~~----~~~~-----~~~~ngi~~~~-dg~~lyv~~~~~~~~i~--~~~~---~~~~~~~~~-~--~g  232 (351)
                      ..+  +.+ |+...    +...     +..|   .+++ ||+.+|++..+..+.++  +...   ...+.+... .  ..
T Consensus       170 ~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~w  245 (352)
T TIGR02658       170 AKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGW  245 (352)
T ss_pred             EEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccccc
Confidence            221  211 22111    1001     1233   3455 88888888775533333  2111   111222111 0  12


Q ss_pred             CCCc---eEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC
Q 018705          233 GPDN---INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP  308 (351)
Q Consensus       233 ~pd~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~  308 (351)
                      .|.|   ++++++| ++||++..+...    -+                       -.....|..+|.++++++..+...
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~----th-----------------------k~~~~~V~ViD~~t~kvi~~i~vG  298 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKW----TH-----------------------KTASRFLFVVDAKTGKRLRKIELG  298 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccc----cc-----------------------cCCCCEEEEEECCCCeEEEEEeCC
Confidence            3555   8899886 599976532100    00                       022246899999888888888642


Q ss_pred             CCCcccceeEEE--EECC-EEEEEecCCCeEEEEeCCCC
Q 018705          309 DATYISFVTSAA--EFDG-NLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       309 ~g~~~~~~~~~~--~~~g-~L~ig~~~~~~i~~~~~~~~  344 (351)
                      .     .+..+.  .++. .||..+..++.|.++|..+.
T Consensus       299 ~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       299 H-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             C-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            2     233444  4556 78988877888999997665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.7e-05  Score=76.70  Aligned_cols=174  Identities=11%  Similarity=0.064  Sum_probs=103.6

Q ss_pred             ceEEEeeCCCeEE-EEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEE-eCC--CCeEEEcC-CC-eE
Q 018705           55 EDVSVVVSKGALY-TATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILC-DNE--KGLLKVTE-EG-VE  125 (351)
Q Consensus        55 e~i~~d~~~g~ly-v~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~-d~~--~gl~~~~~-~g-~~  125 (351)
                      .+++|+|++..++ +...  ...|++++..+|+.+.+....+... ..+++++|+ |+++ +..  ..++.++. +| .+
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~  285 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT  285 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence            4668887776554 4433  3469999998887766544334444 678999996 5443 322  24888875 55 66


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+..........++++||+ |+++...               .....||.+|.++++.+.+.........++++|||+.+
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            5544323345678999995 5555321               01236999998777776654333334468999999988


Q ss_pred             EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEE
Q 018705          205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      +++....   .+++-+...++...+...  .......++++|+..
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i  393 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMV  393 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEE
Confidence            8765332   344433333444433321  122345788999743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=7.4e-05  Score=66.33  Aligned_cols=236  Identities=13%  Similarity=0.110  Sum_probs=137.3

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC-ccccceEEc-CCCCEEEEeC-CC-CeEEEc--CCC-e
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTT-KDGGVILCDN-EK-GLLKVT--EEG-V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d-~~G~L~v~d~-~~-gl~~~~--~~g-~  124 (351)
                      ..++++.++.++..+.+.+.|..+..+|..+|+......... -+. -..|- .+..+.-+.. .. .|..++  .+. +
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            467899999666667777888889999988886644322210 011 22332 3333333322 12 233333  344 7


Q ss_pred             EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      +.+......+++|++.|-+..+++.+-                 +..|..||....+-+.+.. ...+.-+|++|+|  |
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~G--L  153 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEG--L  153 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECCCC--c
Confidence            777666678999999998888888765                 4468888876444333322 3345568999999  4


Q ss_pred             EEEec-ce-e---EEeecCCCCceeEEeccCCC--CCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705          205 VVCES-WK-R---YWLKGDRAGILDAFIENLPG--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  276 (351)
Q Consensus       205 yv~~~-~~-~---~~i~~~~~~~~~~~~~~~~g--~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      +++-. .. .   |.+..-..|..+.|.-..+.  --.++.++++|. +.+++..                         
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-------------------------  208 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-------------------------  208 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-------------------------
Confidence            44333 22 3   44432223444444321111  114688999997 6666543                         


Q ss_pred             hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705          277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                                  +.+..+|.-+|.+...+....+.. ...-+++. -+++..+++...++|..+++.+..+
T Consensus       209 ------------s~~~~lDAf~G~~~~tfs~~~~~~-~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  209 ------------SFIYLLDAFDGTVKSTFSGYPNAG-NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             ------------CcEEEEEccCCcEeeeEeeccCCC-CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence                        245666666888888776533221 11223333 3567777777778888888765443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.66  E-value=7.6e-06  Score=84.10  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=96.6

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---------cC-----------CccccceEEcC-CCCEE
Q 018705           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---------ID-----------SQSLLGLTTTK-DGGVI  108 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---------~~-----------~~p~~gl~~d~-~G~L~  108 (351)
                      ++..|.+|++| +.|++|..... +|.++|. +|....+..         +|           ..|. .+++|| ++.|+
T Consensus       473 ~L~~PkGIa~d-k~g~lYfaD~t-~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~  548 (1899)
T KOG4659|consen  473 QLIFPKGIAFD-KMGNLYFADGT-RIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLL  548 (1899)
T ss_pred             eeccCCceeEc-cCCcEEEeccc-EEEEecc-CceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEE
Confidence            47789999999 78888876554 4888886 665543311         01           3588 999997 66899


Q ss_pred             EEeCCCCeEEEcCCC-eEEecCCC---------------------CCcccEEEccCCcEEEEeCCCc-cCCccccccccc
Q 018705          109 LCDNEKGLLKVTEEG-VEAIVPDA---------------------SFTNDVIAASDGTLYFTVASTK-YTPTDFYKDMAE  165 (351)
Q Consensus       109 v~d~~~gl~~~~~~g-~~~l~~~~---------------------~~~n~l~~d~dG~ly~t~~~~~-~~~~~~~~~~~~  165 (351)
                      |-|.. -++++++++ +.++....                     ..+.+|++.++|-||++.+..+ .+.-+      .
T Consensus       549 Vld~n-vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr------~  621 (1899)
T KOG4659|consen  549 VLDTN-VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVR------K  621 (1899)
T ss_pred             Eeecc-eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheE------E
Confidence            99854 577777776 55543210                     4678999999999999987422 11100      0


Q ss_pred             ccCCceEEEEeCCC---------------C-eEEEeecCccccceEEEcCCCCEEEEEecce-eEE
Q 018705          166 GKPYGQLRKYDPKL---------------K-ETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYW  214 (351)
Q Consensus       166 ~~~~g~l~~~d~~~---------------~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~  214 (351)
                      -..+|.+..+-...               + ........+..|..+|++|||+ +|+++.++ |+.
T Consensus       622 ~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  622 LSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSGNSRIR  686 (1899)
T ss_pred             eccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCCchhhh
Confidence            01122222221100               0 0000012256788999999998 99999988 554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.64  E-value=4.2e-06  Score=80.13  Aligned_cols=165  Identities=14%  Similarity=0.167  Sum_probs=106.3

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEe-------e-cCCccccceEEcCC-------CC
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-------H-IDSQSLLGLTTTKD-------GG  106 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~-------~-~~~~p~~gl~~d~~-------G~  106 (351)
                      ++++..+ +..|.+|++.| +|.+||+.. .|+|++++..++..+...       . ..+-++ ||+++++       +.
T Consensus        22 ~~~va~G-L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        22 KKVLLSG-LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEECC-CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            5677777 89999999995 678999887 599999987555432221       1 234467 9999865       36


Q ss_pred             EEEEe----------CCCCeEEEc--CC-C----eEEecCCC-----CCcccEEEccCCcEEEEeCCCccC------Ccc
Q 018705          107 VILCD----------NEKGLLKVT--EE-G----VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYT------PTD  158 (351)
Q Consensus       107 L~v~d----------~~~gl~~~~--~~-g----~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~------~~~  158 (351)
                      ||++-          ....+.|+.  .+ .    .+.+....     ..-..|++++||.|||+.......      ...
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            88874          123466654  21 1    12222111     344568999999999987643110      000


Q ss_pred             ccc------cc---ccccCCceEEEEeCCCC-----------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          159 FYK------DM---AEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       159 ~~~------~~---~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ...      .+   -.....|.|+|+|++..           +.++++.++.+|.|++++|+|. ||++|.+.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp  250 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP  250 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence            000      00   01123678999998742           2357788899999999999876 99999765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=3.6e-05  Score=74.55  Aligned_cols=174  Identities=10%  Similarity=0.051  Sum_probs=106.7

Q ss_pred             CceEEEeeCCCeE-EEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-e
Q 018705           54 PEDVSVVVSKGAL-YTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-V  124 (351)
Q Consensus        54 pe~i~~d~~~g~l-yv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~  124 (351)
                      -.++.|.|++..| |+...  +..|+.+|..+|+.+.+....+... ..++.+||+ |.++...   ..++.++. .+ .
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~  282 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT  282 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence            3467888777655 55543  4579999998887766654444445 788999996 4444322   34888885 55 6


Q ss_pred             EEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705          125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      +.+...........++|||+ |+++...               .....||++|.++++.+.+......-....++|||+.
T Consensus       283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~  347 (435)
T PRK05137        283 TRLTDSPAIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDL  347 (435)
T ss_pred             EEccCCCCccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCE
Confidence            65554333445678999995 6655432               0123699999887777766543333345789999998


Q ss_pred             EEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705          204 VVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       204 lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      |++.....   ++++-+...+..+.+...  .......++++|+.
T Consensus       348 ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~  390 (435)
T PRK05137        348 IAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRV  390 (435)
T ss_pred             EEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCE
Confidence            87765432   444433322333333221  12355788899973

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=5.2e-05  Score=73.27  Aligned_cols=174  Identities=10%  Similarity=0.130  Sum_probs=101.5

Q ss_pred             eEEEeeCCCeEE-EEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEE
Q 018705           56 DVSVVVSKGALY-TATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEA  126 (351)
Q Consensus        56 ~i~~d~~~g~ly-v~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~  126 (351)
                      +++|+|++..++ +...+  ..|+.+|..+|+.+.+....+... ..++.+||+ |+++...   ..++.++. .+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            678888776664 44333  359999998887766554444445 788999995 5444322   24777775 44 555


Q ss_pred             ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      +...........+++||+ |+++...               ...-.||.++.++++.+.+..........+++|||+.++
T Consensus       279 lt~~~~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        279 LTQSSGIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             CCCCCCCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            544323345578999995 6655321               012368888877666655543222233468999999877


Q ss_pred             EEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705          206 VCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  247 (351)
Q Consensus       206 v~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv  247 (351)
                      ++...+   .+.+-+...++...+...  .......++++|+..+
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~  386 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYIL  386 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEE
Confidence            654332   333333223343333321  1234568888997433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=6.7e-05  Score=72.50  Aligned_cols=177  Identities=13%  Similarity=0.078  Sum_probs=106.8

Q ss_pred             ceEEEeeCCCeE-EEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eE
Q 018705           55 EDVSVVVSKGAL-YTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE  125 (351)
Q Consensus        55 e~i~~d~~~g~l-yv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~  125 (351)
                      .+++|+|++..+ |+...  +..|+.++..+|+.+.+....+... ..++++||+ |+++....   .++.++. ++ .+
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            478999877655 55433  3468999987887666544334444 788999996 55443222   4777774 55 66


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+...........++|||+ |+++....               ..-.||++|.++++.+.+..........+++|||+.+
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            6554434456788999995 55543220               1236999998887776665433344568899999987


Q ss_pred             EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ++.....   .+++-+...+..+.+...  .......+++||+..+..
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEE
Confidence            7755432   333333333444444321  112346788999754443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.60  E-value=5.4e-05  Score=71.47  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eEEecCCCCCcccE
Q 018705           63 KGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDV  137 (351)
Q Consensus        63 ~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l  137 (351)
                      ++.+|+.. .+|.|..+|..+.+.......+..++.++++.+||+ +|+++..+.+..+|. ++  +..+..+ ..|.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i   83 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI   83 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence            45566655 479999999877766443333344431678899996 899886666777774 44  5555554 579999


Q ss_pred             EEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--------cccceEEEcCCCCEEEEEe
Q 018705          138 IAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------YFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       138 ~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------~~~ngi~~~~dg~~lyv~~  208 (351)
                      ++++||+ +|+++..                 .+.+..+|.++.+........        ....+|..++.+...+++-
T Consensus        84 ~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   84 AVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             EE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            9999995 6777643                 468999998876653322211        2345777788877444454


Q ss_pred             cce-eEEeecCCC-Ccee-EEeccCCCCCCceEECCCCCEEEEEe
Q 018705          209 SWK-RYWLKGDRA-GILD-AFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       209 ~~~-~~~i~~~~~-~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ... ++|+.+... .... ... ....+|.+..+|++|+++++..
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTI-KVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred             ccCCeEEEEEeccccccceeee-cccccccccccCcccceeeecc
Confidence            433 788764221 1111 111 2234678889999998665543

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=5.4e-05  Score=73.20  Aligned_cols=175  Identities=11%  Similarity=0.100  Sum_probs=105.4

Q ss_pred             ceEEEeeCCCeE-EEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eE
Q 018705           55 EDVSVVVSKGAL-YTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE  125 (351)
Q Consensus        55 e~i~~d~~~g~l-yv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~  125 (351)
                      .++.|+|++..+ |+...+  ..|++++..+|+.+.+....+... ..++.++|+ |++....   ..++.++. ++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            567888777665 565443  369999998887766554444444 678899995 4443322   24788875 55 55


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+...........+++||. |+++...               .....||+++.++++.+.+..........+++|||+.+
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            5544333344567899984 6666432               11236999998888776654332233346799999988


Q ss_pred             EEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705          205 VVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  247 (351)
Q Consensus       205 yv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv  247 (351)
                      ++.....   .+++-+...+..+.+.+.  +......++++|+..+
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~  389 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLI  389 (430)
T ss_pred             EEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEE
Confidence            8866433   344433333444444321  1223457888887443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.59  E-value=5.7e-06  Score=81.58  Aligned_cols=144  Identities=11%  Similarity=0.103  Sum_probs=97.9

Q ss_pred             CCccccceEEc-CCCCEEEEeCCCCeEEEc-CCC---eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCccccccccc
Q 018705           92 DSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EEG---VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAE  165 (351)
Q Consensus        92 ~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~~g---~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~  165 (351)
                      ..-+. ||.|| ++-.+|.+|....-++.. ..|   .+.+...+..|.+|++|.-+ ++|++|+..         +   
T Consensus      1024 ~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l---------D--- 1090 (1289)
T KOG1214|consen 1024 GSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVL---------D--- 1090 (1289)
T ss_pred             cceee-eeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecccc---------c---
Confidence            34567 99999 666788888766444443 344   44455556899999999976 799999861         0   


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCC
Q 018705          166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPD  242 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~  242 (351)
                         .=.+-.+|.+ .+...+..++.+|.+|++++-+.-||+++..+   ++-..+....+.++++..--++|+|+.+|+.
T Consensus      1091 ---~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1091 ---KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPF 1166 (1289)
T ss_pred             ---hhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcc
Confidence               0135556654 23334567899999999999877799999876   3333222223346666544578999999998


Q ss_pred             CCE--EEEEecC
Q 018705          243 GSF--WIGLIKM  252 (351)
Q Consensus       243 G~l--wva~~~~  252 (351)
                      .++  ||-.+..
T Consensus      1167 s~~LCWvDAGt~ 1178 (1289)
T KOG1214|consen 1167 SKLLCWVDAGTK 1178 (1289)
T ss_pred             cceeeEEecCCc
Confidence            763  7765543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=0.00015  Score=70.24  Aligned_cols=156  Identities=10%  Similarity=0.042  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E-EEEeC--CCCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDN--EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L-~v~d~--~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly  146 (351)
                      +|+.+|.+++..+.+........ ..++.+||+ | |+...  ...++.++. +| .+.+..........+++|||. |+
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            57777764444444443333344 788889996 3 33332  235777774 55 555543323445678999994 66


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCce
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGIL  223 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~~  223 (351)
                      ++.+.               .....||.+|.++++.+.+..........+++|||+.++++... +  .+++-+...+..
T Consensus       262 ~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        262 MSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             EEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            65432               11246999999888877665443334457899999988776533 2  444433323333


Q ss_pred             eEEeccCCCCCCceEECCCCCEE
Q 018705          224 DAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       224 ~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      +.+... .+......++++|+..
T Consensus       327 ~~lt~~-~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        327 RRISFG-GGRYSTPVWSPRGDLI  348 (435)
T ss_pred             EEeecC-CCcccCeEECCCCCEE
Confidence            333221 2222346788888743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=0.00028  Score=68.21  Aligned_cols=158  Identities=11%  Similarity=0.072  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCCEE--EEeC--CCCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI--LCDN--EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~--v~d~--~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly  146 (351)
                      +|+.+|.+++..+.+........ ..++++||+.+  +...  ...++.++. .| .+.+..........+++|||+ |+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            46666654333334333323334 78899999633  3322  124666664 55 555543323345689999994 76


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCce
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGIL  223 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~~  223 (351)
                      ++.+..               ....||.+|.++++.+.+..........+++|||+.|+++.. .+  .++.-+...+..
T Consensus       259 ~~~~~~---------------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        259 FALSKT---------------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             EEEcCC---------------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            654320               123699999988887776554444567889999997766543 32  454433323333


Q ss_pred             eEEeccCCCCCCceEECCCCCEEEE
Q 018705          224 DAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       224 ~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      +.+... .+......++++|+..+.
T Consensus       324 ~~lt~~-~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        324 QRITWE-GSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             EEeecC-CCCccCEEECCCCCEEEE
Confidence            333211 122345678899974443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.50  E-value=6.2e-05  Score=71.91  Aligned_cols=129  Identities=14%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             CCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEECCCCCE
Q 018705          168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSF  245 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~l  245 (351)
                      ..|.++.+|+++|+... ......+..++.  +++.+|+.+..+ .+.++- ..|+..--.+.+.+ ......+ .+|.+
T Consensus       264 ~~g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~sp~v-~~g~l  338 (394)
T PRK11138        264 YNGNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVDQNDRVYALDT-RGGVELWSQSDLLHRLLTAPVL-YNGYL  338 (394)
T ss_pred             cCCeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEcCCCeEEEEEC-CCCcEEEcccccCCCcccCCEE-ECCEE
Confidence            35788889988886532 222222223333  334588877665 344432 23332111111111 1111222 35788


Q ss_pred             EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCE
Q 018705          246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGN  325 (351)
Q Consensus       246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~  325 (351)
                      |++...                                     +.+..+|+++|+++..+....+.   ..++-...+++
T Consensus       339 ~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~  378 (394)
T PRK11138        339 VVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDK  378 (394)
T ss_pred             EEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCE
Confidence            887543                                     46888998899988777543221   22333456889


Q ss_pred             EEEEecCCCeEEEEeCC
Q 018705          326 LYLASLQSNFIGILPLD  342 (351)
Q Consensus       326 L~ig~~~~~~i~~~~~~  342 (351)
                      ||+++. .+.++.++++
T Consensus       379 l~v~t~-~G~l~~~~~~  394 (394)
T PRK11138        379 LLIQAR-DGTVYAITRP  394 (394)
T ss_pred             EEEEeC-CceEEEEeCC
Confidence            999987 6678888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.49  E-value=0.00023  Score=62.40  Aligned_cols=221  Identities=19%  Similarity=0.219  Sum_probs=143.5

Q ss_pred             CCeEEEEEcCCEEEEEEcCC-----CeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCC
Q 018705           63 KGALYTATRDGWVKYFILHN-----ETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDAS  132 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~-----g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~  132 (351)
                      -+.++.+..|..|..++...     |.. +.+........ +++..++|+..++.+..+.++++.  .|  .++|.....
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~  106 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK  106 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence            35666677788887776532     222 33333334556 888999999999888889999983  55  455555546


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCC-EEEEEec
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNED-FVVVCES  209 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~-~lyv~~~  209 (351)
                      .+-++++++|.+-.++-+.                 +..+..||..++......+.  -...+++.|+|+.. .++++..
T Consensus       107 dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             ceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            7888999999887777654                 34677887664443333333  34577899999874 3334333


Q ss_pred             -ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705          210 -WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  286 (351)
Q Consensus       210 -~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
                       ++  ++|=-. +......|. +..++..-+++++||.+-+..+.                                   
T Consensus       170 ~DktvKvWnl~-~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgk-----------------------------------  212 (315)
T KOG0279|consen  170 WDKTVKVWNLR-NCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGK-----------------------------------  212 (315)
T ss_pred             CCceEEEEccC-Ccchhhccc-cccccEEEEEECCCCCEEecCCC-----------------------------------
Confidence             33  666221 111112222 23455566789999998877432                                   


Q ss_pred             CceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          287 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                       .+.+...|-.+++-++++..     ...+.++++..++.|+.-.....|-++++.+.
T Consensus       213 -dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  213 -DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             -CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence             34556666656776666632     34688899999999999988899999987664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=0.0003  Score=68.37  Aligned_cols=156  Identities=8%  Similarity=-0.001  Sum_probs=87.0

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEE-EeCC--CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VIL-CDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v-~d~~--~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly  146 (351)
                      +|+.+|.++...+.+........ ...+++||+ |+. ....  ..++.++. +| .+.+..........+++|||. |+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            45556653333343333333334 678899995 433 3322  24777774 55 555543222334678999995 76


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCce
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGIL  223 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~  223 (351)
                      ++...               .....||.+|.++++.+.+..........+++|||+.++++....   .+++-+...++.
T Consensus       278 ~~~~~---------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        278 LVLSK---------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EEEeC---------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            65432               012369999998888777655433445678999999887765432   444333223443


Q ss_pred             eEEeccCCCCCCceEECCCCCEE
Q 018705          224 DAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       224 ~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      +.+... ........++++|+..
T Consensus       343 ~~Lt~~-g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        343 SRLTFE-GEQNLGGSITPDGRSM  364 (448)
T ss_pred             EEEecC-CCCCcCeeECCCCCEE
Confidence            333211 1122345788899743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.48  E-value=0.00049  Score=65.26  Aligned_cols=108  Identities=18%  Similarity=0.171  Sum_probs=64.9

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCC-C
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDA-S  132 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~-~  132 (351)
                      .+++++  ++.+|++..+|.++.+|..+|+..--.........+.+.+ ++++|+++....++.++. +|...+.... .
T Consensus        59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        59 LQPAVA--GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             cceEEE--CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence            355664  7899999999999999988887632112222222134443 678999887777899995 6722221111 1


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      .+.+..+-.++.+|+...                  .|.|+.+|+++|+..
T Consensus       136 ~~~~~p~v~~~~v~v~~~------------------~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       136 EVLSPPLVANGLVVVRTN------------------DGRLTALDAATGERL  168 (377)
T ss_pred             eeecCCEEECCEEEEECC------------------CCeEEEEEcCCCcee
Confidence            111111113456777543                  367899998877654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.45  E-value=0.00013  Score=65.50  Aligned_cols=233  Identities=17%  Similarity=0.214  Sum_probs=136.4

Q ss_pred             CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-----e----E-EEE----eecC--CccccceE
Q 018705           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-----T----L-VNW----KHID--SQSLLGLT  100 (351)
Q Consensus        37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-----~----~-~~~----~~~~--~~p~~gl~  100 (351)
                      +.+|+.-++.    +..|=+++..  ++.||+++... |+++-....     +    . ..|    ....  -+.+ .|+
T Consensus        38 ~g~l~~~~r~----F~r~MGl~~~--~~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia  109 (335)
T TIGR03032        38 NGELDVFERT----FPRPMGLAVS--PQSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLA  109 (335)
T ss_pred             CCcEEEEeec----cCccceeeee--CCeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-hee
Confidence            4445544444    5567789885  78999998765 888821111     1    1 011    1111  2456 788


Q ss_pred             EcCCCCEEEEeCC-CCeEEEcCCC--e--------EEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705          101 TTKDGGVILCDNE-KGLLKVTEEG--V--------EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus       101 ~d~~G~L~v~d~~-~gl~~~~~~g--~--------~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      + .++++|+.+.. +.+..++++-  +        +.++.+. -..|+++.....--|+|.-+..-....|.    ++..
T Consensus       110 ~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~  184 (335)
T TIGR03032       110 L-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRR  184 (335)
T ss_pred             e-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----cccc
Confidence            8 67788877654 4566666432  2        2222222 57899998654457877643111111111    1233


Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FW  246 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lw  246 (351)
                      +|++. +|-.+++  ++.+++.+|.+-.+. +|+ ||++++.. .+...+...|+.+..+ ..||+|.|+.+.  |+ ++
T Consensus       185 ~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~G~~e~Va-~vpG~~rGL~f~--G~llv  256 (335)
T TIGR03032       185 DGGCV-IDIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQAGKFQPVA-FLPGFTRGLAFA--GDFAF  256 (335)
T ss_pred             CCeEE-EEeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCCCcEEEEE-ECCCCCccccee--CCEEE
Confidence            45544 5655564  567899999887775 555 99999877 4443345567777776 689999999997  66 67


Q ss_pred             EEEecCC-chhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC
Q 018705          247 IGLIKMN-QTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP  308 (351)
Q Consensus       247 va~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~  308 (351)
                      |++...| +..|.-+   |.-.++-.               ..-+|..+|-.+|+++..+.-.
T Consensus       257 VgmSk~R~~~~f~gl---pl~~~l~~---------------~~CGv~vidl~tG~vv~~l~fe  301 (335)
T TIGR03032       257 VGLSKLRESRVFGGL---PIEERLDA---------------LGCGVAVIDLNSGDVVHWLRFE  301 (335)
T ss_pred             EEeccccCCCCcCCC---chhhhhhh---------------hcccEEEEECCCCCEEEEEEeC
Confidence            8887766 3333100   11111111               1136888888788888777653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.44  E-value=1e-06  Score=64.38  Aligned_cols=73  Identities=34%  Similarity=0.572  Sum_probs=54.4

Q ss_pred             ccEEEccCCcEEEEeCCCccCCcccc--cccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          135 NDVIAASDGTLYFTVASTKYTPTDFY--KDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       135 n~l~~d~dG~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      |||+.-...++|+|+....  .+.+.  .+.+.+.+.+.|..||++  +.+.+++++.+||||++||+++.|||++..+
T Consensus         1 NDIvavG~~sFy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             CCEEEECcCcEEEECchhh--CcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence            5666655567999987522  22221  233335567889999984  6788899999999999999999999999876

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.44  E-value=0.00027  Score=67.88  Aligned_cols=175  Identities=11%  Similarity=0.046  Sum_probs=103.8

Q ss_pred             eEEEeeCCCeEEEEE-cC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEE
Q 018705           56 DVSVVVSKGALYTAT-RD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEA  126 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~-~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~  126 (351)
                      +++++|++..++... .+  ..|+.++..+++.+......+... ..++.++|+ |+++...   ..++.++. ++ .+.
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence            456787666664433 32  479999988887666554444555 788999985 5554332   24777774 45 555


Q ss_pred             ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      +...........+++||. |+++...               .....||++|.++++.+.+.........++++|||+.++
T Consensus       273 l~~~~~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       273 LTNGPGIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence            543322233567888985 5554332               012369999988777766654444556788999999888


Q ss_pred             EEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705          206 VCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG  248 (351)
Q Consensus       206 v~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva  248 (351)
                      ++....   ++++-+...+..+.+...  .......+.++|+ |+.+
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~  382 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGERVLTDT--GLDESPSFAPNGRMILYA  382 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCeEEccCC--CCCCCceECCCCCEEEEE
Confidence            876543   344333222333333321  1233457778886 4443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.43  E-value=6.3e-05  Score=64.87  Aligned_cols=177  Identities=17%  Similarity=0.186  Sum_probs=105.8

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCC-CCEEEEeCCCCeEEEc--CCC--eEEe-c
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT--EEG--VEAI-V  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~~--~~g--~~~l-~  128 (351)
                      .++.|..++..+|+|..||.+..||...-..++........+ .+...++ +.|+++|..+ -++++  .+.  .+.+ +
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg-~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSG-NIRVWDLGENSCTHELIP  164 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCC-cEEEEEccCCccccccCC
Confidence            466666556778999999988888875533332222223345 7888764 5899998654 44554  233  3333 3


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee--cCc----cccceEEEcCCC
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH--EGF----YFANGIALSKNE  201 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~--~~~----~~~ngi~~~~dg  201 (351)
                      .....+.++.+++||...++...                 .|+.|.|+.-+++.. .+.  ..+    .+.--+.+|||+
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence            33478899999999987766543                 467777765443321 111  111    223346789999


Q ss_pred             CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++|--+++..  ++|-.+.- -..+...+......-+.+|+.||.+.|+...
T Consensus       228 k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  228 KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            8666666665  67754321 1223222222223445688999998887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.39  E-value=0.00018  Score=68.30  Aligned_cols=127  Identities=11%  Similarity=0.071  Sum_probs=68.2

Q ss_pred             cCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEECCCCC
Q 018705          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS  244 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~  244 (351)
                      ...|.++.+|+++|+...... .......++  +++.+|+.+..+ .+.++ ...|+..--...+.+ ....... .+++
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~~G~l~~~d-~~tG~~~W~~~~~~~~~~ssp~i-~g~~  322 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDADGVVVALD-RRSGSELWKNDELKYRQLTAPAV-VGGY  322 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECCCCeEEEEE-CCCCcEEEccccccCCccccCEE-ECCE
Confidence            345789999998887543222 222222333  344688877655 33333 223332111101111 0111223 3457


Q ss_pred             EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECC
Q 018705          245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDG  324 (351)
Q Consensus       245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g  324 (351)
                      +|++...                                     +.+..+|+.+|+.+..+..+.+.   ..++-...++
T Consensus       323 l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~~  362 (377)
T TIGR03300       323 LVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVGD  362 (377)
T ss_pred             EEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEECC
Confidence            8877533                                     46888998779998887643321   2233345678


Q ss_pred             EEEEEecCCCeEEEE
Q 018705          325 NLYLASLQSNFIGIL  339 (351)
Q Consensus       325 ~L~ig~~~~~~i~~~  339 (351)
                      +||+++. .+.|+.|
T Consensus       363 ~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       363 GLLVQTR-DGDLYAF  376 (377)
T ss_pred             EEEEEeC-CceEEEe
Confidence            9999997 5557665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.38  E-value=0.00029  Score=66.60  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=94.1

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC-CeEEE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKV  119 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~-gl~~~  119 (351)
                      .+.++..+. ..+.++++.+++..+|+...+|.|.++|..+++...-...+..|. ++++++||+ +++++... .+..+
T Consensus        28 ~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   28 VVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             EEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEE
T ss_pred             EEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEe
Confidence            345565542 224567888777889999999999999998888765556778899 999999997 56666444 45555


Q ss_pred             cC-CC--eEEecCCC-------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeec
Q 018705          120 TE-EG--VEAIVPDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHE  187 (351)
Q Consensus       120 ~~-~g--~~~l~~~~-------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~  187 (351)
                      |. +.  ++.+....       .++.+|..++.+.-|+..-.                ..+.++.+|....+  ......
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeec
Confidence            63 33  44443321       34556666776664544321                24688888854322  222334


Q ss_pred             CccccceEEEcCCCCEEEEEecce-eEEeec
Q 018705          188 GFYFANGIALSKNEDFVVVCESWK-RYWLKG  217 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~  217 (351)
                      ...+|....+++++++++++.... .+.+.+
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccccccccCcccceeeecccccceeEEEe
Confidence            456899999999999888875544 444433

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00066  Score=65.60  Aligned_cols=155  Identities=9%  Similarity=0.020  Sum_probs=83.9

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly  146 (351)
                      +|+.+|.++...+.+........ ..++.+||+ |+++....   .++.++. +| .+.+..........+++|||+ |+
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            46666653222233322223334 788899995 44433222   3777774 56 555543223445678999994 66


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCce
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGIL  223 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~~  223 (351)
                      ++.+.               ...-.||.+|.++++.+.+..........+++|||+.++++... +  .++.-+...+..
T Consensus       256 ~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        256 VALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             EEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence            65432               11236999998777766654432233456899999987775432 2  444432222333


Q ss_pred             eEEeccCCCCCCceEECCCCCE
Q 018705          224 DAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       224 ~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      +..... ..+.....++++|+.
T Consensus       321 ~~lt~~-g~~~~~~~~SpDG~~  341 (427)
T PRK02889        321 QRVTFT-GSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEecC-CCCcCceEECCCCCE
Confidence            322211 122334678888874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=0.00032  Score=67.88  Aligned_cols=175  Identities=11%  Similarity=0.094  Sum_probs=103.1

Q ss_pred             CceEEEeeCCCeE-EEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-e
Q 018705           54 PEDVSVVVSKGAL-YTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-V  124 (351)
Q Consensus        54 pe~i~~d~~~g~l-yv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-~  124 (351)
                      -.++.|+|++..+ |++..+  ..|+.+|..+++.+.+....+... ..++.+||+ |.++....   .++.++. .+ .
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence            4578899877665 444433  369999987776655544334444 788999996 44443222   3666674 45 6


Q ss_pred             EEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705          125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      +.+..........+++|||. |+++...               ...-.||.++..++..+.+. ...  ...+++|||+.
T Consensus       285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~  346 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKT  346 (429)
T ss_pred             EeeccCCCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCE
Confidence            55554434466789999995 6665432               01236888887766655542 111  34679999998


Q ss_pred             EEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          204 VVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       204 lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++....+.+.++ ...+..+.+....  ......++++|++.+...
T Consensus       347 ia~~~~~~i~~~D-l~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        347 LVMINGDNVVKQD-LTSGSTEVLSSTF--LDESPSISPNGIMIIYSS  390 (429)
T ss_pred             EEEEcCCCEEEEE-CCCCCeEEecCCC--CCCCceECCCCCEEEEEE
Confidence            8776554422222 2223333332111  123467899998666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.001  Score=64.32  Aligned_cols=166  Identities=11%  Similarity=0.058  Sum_probs=92.9

Q ss_pred             CCeEEEEEcCC------EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E-EEEeCC--CCeEEEcC-CC-eEEecCC
Q 018705           63 KGALYTATRDG------WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDNE--KGLLKVTE-EG-VEAIVPD  130 (351)
Q Consensus        63 ~g~lyv~~~~g------~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L-~v~d~~--~gl~~~~~-~g-~~~l~~~  130 (351)
                      ....|+.....      +|+.+|.+++..+.+........ ..+++++|+ | |+....  ..++.++. +| .+.+...
T Consensus       163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~  241 (430)
T PRK00178        163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF  241 (430)
T ss_pred             eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence            45667754321      47777775554444433333334 778889995 4 334322  24777774 56 5555433


Q ss_pred             CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      .......+++|||+ |+++....               ....||++|.++++.+.+...........++|||+.++++..
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKD---------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccC---------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEEC
Confidence            23344678999994 66654320               123699999988887766543333445689999998877543


Q ss_pred             c-e--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705          210 W-K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       210 ~-~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      . +  .+++-+...++.+.+... ........++++|+.
T Consensus       307 ~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~  344 (430)
T PRK00178        307 RGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKT  344 (430)
T ss_pred             CCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCE
Confidence            2 2  343332223333332211 112234577888873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.00078  Score=65.24  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EE
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly  146 (351)
                      +|+.+|..++..+.+........ ..+++++|+ |+.+...   ..++.++. +| .+.+...........++|||. |+
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~-~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPIL-SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccc-cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            46666664333444433322334 778889996 4444322   23777774 55 555543223334678999995 66


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCce
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGIL  223 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~~  223 (351)
                      ++.+.               .....||.+|.++++.+.+..........+++|||+.++++.. .+  .+++-+...++.
T Consensus       264 ~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        264 LTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             EEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            65432               0123699999988887766544333345789999997777653 22  344332222333


Q ss_pred             eEEeccCCCCCCceEECCCCCE
Q 018705          224 DAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       224 ~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      +.+... ..+.....++++|+.
T Consensus       329 ~~lt~~-g~~~~~~~~SpDG~~  349 (433)
T PRK04922        329 ERLTFQ-GNYNARASVSPDGKK  349 (433)
T ss_pred             EEeecC-CCCccCEEECCCCCE
Confidence            322211 123345788889973

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00078  Score=64.83  Aligned_cols=173  Identities=10%  Similarity=0.051  Sum_probs=101.6

Q ss_pred             eEEEeeCCCe-EEE-EEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eE
Q 018705           56 DVSVVVSKGA-LYT-ATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE  125 (351)
Q Consensus        56 ~i~~d~~~g~-lyv-~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~  125 (351)
                      ...|+|+++. +|. ...  ...|+.+|..+|+.+.+....+... ...+.+||+ |.+....   ..++.++. .+ .+
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence            5688877763 554 443  3579999998888877655444333 566888984 5444322   35788874 55 66


Q ss_pred             EecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+......-..-.++||| .|+|+....               ....||++|.++++.+.+...... + ..+||||+.+
T Consensus       271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~I  333 (419)
T PRK04043        271 QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYI  333 (419)
T ss_pred             EcccCCCccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEE
Confidence            554432112234789999 588876431               123799999998888665432222 2 4899999976


Q ss_pred             EEEecc-------e--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705          205 VVCESW-------K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG  248 (351)
Q Consensus       205 yv~~~~-------~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva  248 (351)
                      .++...       +  .+++-+...+..+.+...  +......++++|+ ++.+
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~  385 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFI  385 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEE
Confidence            664432       1  333333333444433321  1112357888886 4444

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.31  E-value=0.00057  Score=66.60  Aligned_cols=175  Identities=18%  Similarity=0.313  Sum_probs=110.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--EE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC--eEE
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNET--LV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG--VEA  126 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g--~~~  126 (351)
                      -++.+.+++..+..+..++.+..++..+++  .. .......... .+++.++|...++-.....++++.   ++  .++
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~  241 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT  241 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence            345667556665566677766666653443  11 1111122345 899999999887777777777762   33  566


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~ly  205 (351)
                      +......++++++.++|++.++.+.                 ++.+..||..+++....... -....++++++|++.++
T Consensus       242 l~gH~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  242 LKGHSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             ecCCCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence            6655578899999999998888765                 56799999888776554433 34667899999999777


Q ss_pred             EEecce--eEEeecCCCCc---eeEEecc-CCCCCCceEECCCCCEEEEE
Q 018705          206 VCESWK--RYWLKGDRAGI---LDAFIEN-LPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       206 v~~~~~--~~~i~~~~~~~---~~~~~~~-~~g~pd~i~~d~~G~lwva~  249 (351)
                      .++.++  ++|-.  ..+.   .+.+... .+..-..+.++++|.+.+..
T Consensus       305 s~s~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~  352 (456)
T KOG0266|consen  305 SASYDGTIRVWDL--ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA  352 (456)
T ss_pred             EcCCCccEEEEEC--CCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence            776555  55532  2233   1222211 11112456788999754443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.30  E-value=0.00067  Score=63.21  Aligned_cols=194  Identities=16%  Similarity=0.178  Sum_probs=108.3

Q ss_pred             CCCceEEEeeCCCeEEEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eEE-
Q 018705           52 NHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VEA-  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~~-  126 (351)
                      ..|+.+++++++..+|+...  ++.+..+|..++++..-...++... .....++.....|-.+ ...+.++.+| ... 
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence            34559999988889999763  6889999998887754323333232 3333333444333222 1222233344 211 


Q ss_pred             ----ecC-CC---CCcccEEEcc-CCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe------ecC--
Q 018705          127 ----IVP-DA---SFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL------HEG--  188 (351)
Q Consensus       127 ----l~~-~~---~~~n~l~~d~-dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~------~~~--  188 (351)
                          +.. ..   ..|   .+.+ ||+ +|+|..                   |.|+.+|.++.+....      ...  
T Consensus       184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-------------------G~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-------------------GKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             eeeeecCCccccccCC---ceEcCCCcEEEEecC-------------------CeEEEEecCCCcceecceeeecccccc
Confidence                111 00   344   2233 665 444432                   5788888543322211      111  


Q ss_pred             --ccccce---EEEcCCCCEEEEEecc----------eeEEeecCCCCceeEEeccCCCCCCceEECCCCC--EEEEEec
Q 018705          189 --FYFANG---IALSKNEDFVVVCESW----------KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS--FWIGLIK  251 (351)
Q Consensus       189 --~~~~ng---i~~~~dg~~lyv~~~~----------~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~  251 (351)
                        .-.|.|   +++++|++++||....          +.+|+-+...++....+ .....|.++++++||+  ||++...
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCC
Confidence              124555   9999999999995321          15776654444433222 1233578999999998  3444321


Q ss_pred             CCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705          252 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF  305 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~  305 (351)
                                                          .+.|..+|.++++.+.++
T Consensus       321 ------------------------------------s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       321 ------------------------------------DKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ------------------------------------CCcEEEEECcCCeEEeee
Confidence                                                235889999888988887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.30  E-value=0.00083  Score=58.97  Aligned_cols=192  Identities=11%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             CcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC
Q 018705           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG  115 (351)
Q Consensus        37 ~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g  115 (351)
                      +.....+.+-..|.-..-++++..++++..+.++.|+.+..||..+|+. +.|........ ++++++|.+-.|+.+...
T Consensus        49 d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   49 DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcc
Confidence            3334444455455334456778885566667788899999999988755 45555555677 999999999888877777


Q ss_pred             eEEEcC-CC--eEEecCC--CCCcccEEEccCC-c-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eec
Q 018705          116 LLKVTE-EG--VEAIVPD--ASFTNDVIAASDG-T-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHE  187 (351)
Q Consensus       116 l~~~~~-~g--~~~l~~~--~~~~n~l~~d~dG-~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~  187 (351)
                      .++++. -|  +.++...  ...++.+.+.|+- . +.++.+.                 ++.|-.||..+-+++. +..
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----------------DktvKvWnl~~~~l~~~~~g  190 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----------------DKTVKVWNLRNCQLRTTFIG  190 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----------------CceEEEEccCCcchhhcccc
Confidence            777763 33  3333333  3678899999974 4 4444332                 4568888887666543 233


Q ss_pred             CccccceEEEcCCCCEEEEE-ecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          188 GFYFANGIALSKNEDFVVVC-ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~-~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .-.+.|-+++||||. +..+ .-++  .+|  +...++. ++.-+.......++|.+ .++|++...
T Consensus       191 h~~~v~t~~vSpDGs-lcasGgkdg~~~Lw--dL~~~k~-lysl~a~~~v~sl~fsp-nrywL~~at  252 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDGS-LCASGGKDGEAMLW--DLNEGKN-LYSLEAFDIVNSLCFSP-NRYWLCAAT  252 (315)
T ss_pred             ccccEEEEEECCCCC-EEecCCCCceEEEE--EccCCce-eEeccCCCeEeeEEecC-CceeEeecc
Confidence            345678899999998 4333 2222  334  2111221 22111111234568876 579998654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.00025  Score=63.06  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEE-Ec-C-
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-VT-E-  121 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~-~~-~-  121 (351)
                      +.+.|.-..-.+|...|.++.+..+..|..|..||.+..+-+......++|.  .|+|++|-++++..+...++ ++ + 
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecc
Confidence            3455655566788999877777777889999999986554444455556665  89999998888776663433 34 2 


Q ss_pred             --CC-eEEecCC---CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec----Ccc
Q 018705          122 --EG-VEAIVPD---ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE----GFY  190 (351)
Q Consensus       122 --~g-~~~l~~~---~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----~~~  190 (351)
                        .| .+.+.-.   ....++|.+++||. |.+++..                  +.++.+|.=+|++..-..    ...
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCC
Confidence              44 5555433   26788999999994 6777654                  456777655565432222    223


Q ss_pred             ccceEEEcCCCCEEEEEecce
Q 018705          191 FANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .|-..+++||++++..++.++
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg  254 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDG  254 (311)
T ss_pred             cceeEEECCCCcEEEEecCCC
Confidence            344788999999777777666

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.30  E-value=0.00026  Score=67.65  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCCCC-------c
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDASF-------T  134 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~~~-------~  134 (351)
                      ++.+|++..+|.++.+|.++|+..-.....+.......+ .++.+|+....+.++.++. +|...+......       .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            678999988999999999888753211112211101222 2678888877667899995 772222111100       0


Q ss_pred             ccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce---------EEEcC--CCCE
Q 018705          135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG---------IALSK--NEDF  203 (351)
Q Consensus       135 n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng---------i~~~~--dg~~  203 (351)
                      ..-++. +|.+|+...                  +|.++.+|+++|+..... ....|.+         +..+|  .++.
T Consensus       199 ~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~  258 (394)
T PRK11138        199 SAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGV  258 (394)
T ss_pred             CCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCE
Confidence            111222 355666543                  356777777776542211 1111110         11111  2335


Q ss_pred             EEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          204 VVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      +|+....+ .+.++ ...|+..--. ... .+..+.. .+|++|++...                               
T Consensus       259 vy~~~~~g~l~ald-~~tG~~~W~~-~~~-~~~~~~~-~~~~vy~~~~~-------------------------------  303 (394)
T PRK11138        259 VYALAYNGNLVALD-LRSGQIVWKR-EYG-SVNDFAV-DGGRIYLVDQN-------------------------------  303 (394)
T ss_pred             EEEEEcCCeEEEEE-CCCCCEEEee-cCC-CccCcEE-ECCEEEEEcCC-------------------------------
Confidence            88876555 33333 2234322111 111 1223444 35778887543                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                            +.++.+|+++|+.+=......+.   ..++....+|+||+++. .+.+..++..+
T Consensus       304 ------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~-~G~l~~ld~~t  354 (394)
T PRK11138        304 ------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDS-EGYLHWINRED  354 (394)
T ss_pred             ------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeC-CCEEEEEECCC
Confidence                  46888888777754332211111   22333346788888875 45677776543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.25  E-value=7.7e-05  Score=72.67  Aligned_cols=150  Identities=15%  Similarity=0.262  Sum_probs=110.1

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEc-CCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL-HNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG  123 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~-~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g  123 (351)
                      .+...+-.+++|.+++..+..+..|+.|..||. .+++. +++.......+ .++|.++|++++.-...+.++++.  .|
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            344556678999976667777888999999998 33333 44444445566 999999999998888889999983  55


Q ss_pred             --eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE--EeecCcccc---ceEE
Q 018705          124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFA---NGIA  196 (351)
Q Consensus       124 --~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~--~~~~~~~~~---ngi~  196 (351)
                        .+.+......++++++.+||+++++.+.                 ++.+..||..+++..  ........+   ..+.
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  341 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ  341 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence              6666665578899999999988877643                 578999999888732  222333334   7899


Q ss_pred             EcCCCCEEEEEecce--eEEe
Q 018705          197 LSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~--~~~i  215 (351)
                      ++|++++++.+..++  ++|-
T Consensus       342 fsp~~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  342 FSPNGKYLLSASLDRTLKLWD  362 (456)
T ss_pred             ECCCCcEEEEecCCCeEEEEE
Confidence            999999888877665  6663

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.24  E-value=0.00017  Score=69.30  Aligned_cols=112  Identities=18%  Similarity=0.292  Sum_probs=72.6

Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-------c-CccccceE
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-------E-GFYFANGI  195 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-------~-~~~~~ngi  195 (351)
                      ++++++.+..|.+|++.|||++||+...                 .|+|+++++.++..+.+.       . +....-||
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl   84 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL   84 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeE
Confidence            5566777789999999999999999852                 378999987655433221       1 23456789


Q ss_pred             EEcCCC------CEEEEEec-----------ce--eEEeecC--CCCceeEEeccCCCC----CCceEECCCCCEEEEEe
Q 018705          196 ALSKNE------DFVVVCES-----------WK--RYWLKGD--RAGILDAFIENLPGG----PDNINLAPDGSFWIGLI  250 (351)
Q Consensus       196 ~~~~dg------~~lyv~~~-----------~~--~~~i~~~--~~~~~~~~~~~~~g~----pd~i~~d~~G~lwva~~  250 (351)
                      +++|+-      .+||++.+           ..  |+.+...  .....+.+...+|..    -..|.+++||.|||++.
T Consensus        85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606        85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence            999875      36888742           12  5555421  122223333334321    23588999999999998


Q ss_pred             cC
Q 018705          251 KM  252 (351)
Q Consensus       251 ~~  252 (351)
                      ..
T Consensus       165 D~  166 (454)
T TIGR03606       165 EQ  166 (454)
T ss_pred             CC
Confidence            64

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.21  E-value=0.0025  Score=60.55  Aligned_cols=185  Identities=18%  Similarity=0.193  Sum_probs=116.8

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-e-cCCccccceEEcCCCCEEEEeCCCCeEEEc-
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-H-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-  120 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-  120 (351)
                      .++..|....-.+++..+++..+|.++.||.|..|+...|..-++. . ...... +|+.+..+.++.+.+...+.++. 
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEec
Confidence            3444555556678888877788999999999999998666554332 1 123345 88888889999998877676665 


Q ss_pred             C-CCe-EEe-cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEE
Q 018705          121 E-EGV-EAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA  196 (351)
Q Consensus       121 ~-~g~-~~l-~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~  196 (351)
                      + .|. ... ..-...|-++++.++| .+.+++..                   .|..+...++ .... .-...+.++|
T Consensus       392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~~-~~~~-~~~y~~s~vA  450 (603)
T KOG0318|consen  392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQTK-VSSI-PIGYESSAVA  450 (603)
T ss_pred             ccCcccccceeecCCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCCc-ceee-ccccccceEE
Confidence            2 331 111 1111678899999997 45555533                   3555442222 2222 2234678899


Q ss_pred             EcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          197 LSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++|+++.+-|.-.+.   .|.+.+....+ +.......+-+..+++++||.+.+++-.
T Consensus       451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  451 VSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             EcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEecc
Confidence            999999777755444   46666532212 2122234555678899999988777643

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.21  E-value=0.00022  Score=65.00  Aligned_cols=177  Identities=19%  Similarity=0.244  Sum_probs=99.8

Q ss_pred             ceEEEeeCCCeEEEEEc-------------CCEEEEEEcCCCeE-EEEeec------CCccccceEEcC-C-----CCEE
Q 018705           55 EDVSVVVSKGALYTATR-------------DGWVKYFILHNETL-VNWKHI------DSQSLLGLTTTK-D-----GGVI  108 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~-------------~g~I~~~d~~~g~~-~~~~~~------~~~p~~gl~~d~-~-----G~L~  108 (351)
                      -++.+| +.++|||-..             .-+|+.+|.+++++ +++..+      ....+ .+++|. +     +.+|
T Consensus         4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEE
T ss_pred             cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEE
Confidence            368899 7899998431             12799999998876 333221      23345 788885 2     4689


Q ss_pred             EEeCC-CCeEEEc-CCC--eEEecCCC-------------------CCcccEEEcc---CC-cEEEEeCCCccCCccccc
Q 018705          109 LCDNE-KGLLKVT-EEG--VEAIVPDA-------------------SFTNDVIAAS---DG-TLYFTVASTKYTPTDFYK  161 (351)
Q Consensus       109 v~d~~-~gl~~~~-~~g--~~~l~~~~-------------------~~~n~l~~d~---dG-~ly~t~~~~~~~~~~~~~  161 (351)
                      ++|.. .+|+.++ .+|  .+++....                   ....+++.++   +| .+|+...++         
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss---------  152 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS---------  152 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----------
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC---------
Confidence            99987 4788888 466  44432211                   2355556554   44 477766431         


Q ss_pred             ccccccCCceEEEEeCC------C-------CeEEEeecCccccceEEEcCCCCEEEEEecce-e-EEeecCC---CCce
Q 018705          162 DMAEGKPYGQLRKYDPK------L-------KETTVLHEGFYFANGIALSKNEDFVVVCESWK-R-YWLKGDR---AGIL  223 (351)
Q Consensus       162 ~~~~~~~~g~l~~~d~~------~-------~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~-~~i~~~~---~~~~  223 (351)
                              ..+|+...+      .       .+++.+.+......|++++++|. ||+++... . +.....+   ..+.
T Consensus       153 --------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~  223 (287)
T PF03022_consen  153 --------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENF  223 (287)
T ss_dssp             --------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCE
T ss_pred             --------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccch
Confidence                    134443210      0       12233333334568999999886 99999877 3 2222211   1234


Q ss_pred             eEEec-cC-CCCCCceEECC--CCCEEEEEec
Q 018705          224 DAFIE-NL-PGGPDNINLAP--DGSFWIGLIK  251 (351)
Q Consensus       224 ~~~~~-~~-~g~pd~i~~d~--~G~lwva~~~  251 (351)
                      ++++. .. -.+|+++.++.  +|.||+.+..
T Consensus       224 ~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  224 EILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             heeEEcCceeeccceeeeccccCceEEEEECc
Confidence            44443 22 34799999999  9999998754

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.19  E-value=0.00038  Score=61.76  Aligned_cols=181  Identities=13%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeE-EEEeec-CCccccceEEcCCCCEEEEeCCC-CeEEEc--CC-C
Q 018705           51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEK-GLLKVT--EE-G  123 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~-~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~--~~-g  123 (351)
                      ..-+.+|+++|+.+.||+ ....+.|+.++. +|++ +.+... .+.+- ||++-.+|.+.+++... .++.+.  .+ .
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            345889999988898886 556789999998 5655 444333 35688 99998888888877543 455554  22 1


Q ss_pred             -e-----EEecCCC-----CCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeC--CCCeEEEee---
Q 018705          124 -V-----EAIVPDA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLH---  186 (351)
Q Consensus       124 -~-----~~l~~~~-----~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~---  186 (351)
                       .     +.+....     ....+|+.|+. +++|+....                ...+|+.++.  .........   
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~  162 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQD  162 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HH
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccc
Confidence             1     1122111     45889999997 478876432                1234666654  212222111   


Q ss_pred             -----cCccccceEEEcCCCCEEEEEe-cceeEEeecCCCCceeEEec---cCC------CCCCceEECCCCCEEEEEe
Q 018705          187 -----EGFYFANGIALSKNEDFVVVCE-SWKRYWLKGDRAGILDAFIE---NLP------GGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       187 -----~~~~~~ngi~~~~dg~~lyv~~-~~~~~~i~~~~~~~~~~~~~---~~~------g~pd~i~~d~~G~lwva~~  250 (351)
                           ....-+.+++++|....||+-+ ..+++..-+ ..|+......   ...      ..|-||++|++|+|||..-
T Consensus       163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence                 0123477899999877777744 343433332 2333322111   111      1478999999999999864

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.19  E-value=0.003  Score=60.64  Aligned_cols=160  Identities=13%  Similarity=0.072  Sum_probs=88.7

Q ss_pred             CEEEEEEcCCCeEEEEeecCCccccceEEcCCCCE-EEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-E
Q 018705           73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-L  145 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-l  145 (351)
                      ..|+.+|..++..+.+........ ..+++++|+. +.+...   ..++.++. +| .+.+..........+++|||. |
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            357888775444555544333344 6778899964 333322   24666664 55 544433223445678999984 7


Q ss_pred             EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCc
Q 018705          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGI  222 (351)
Q Consensus       146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~  222 (351)
                      +++...               .....||.+|.++++.+.+...........+++||+.|+++.. .+  .+++-+...+.
T Consensus       249 ~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       249 AVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             EEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            766432               1123699999887776665433222335678999997776543 22  44433322333


Q ss_pred             eeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          223 LDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       223 ~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ...+... ........++++|+..+..
T Consensus       314 ~~~l~~~-~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       314 VRRLTFR-GGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEEeecC-CCCccCeEECCCCCEEEEE
Confidence            3333211 1233456788888754443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.18  E-value=0.0017  Score=57.58  Aligned_cols=193  Identities=17%  Similarity=0.194  Sum_probs=104.6

Q ss_pred             CCccccceEEcCC-CCEEEEeCC-CCeEEEcCCC--eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705           92 DSQSLLGLTTTKD-GGVILCDNE-KGLLKVTEEG--VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus        92 ~~~p~~gl~~d~~-G~L~v~d~~-~gl~~~~~~g--~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      ..++. ||+++++ +.||..... ..++.++.+|  ++.+. .+...+.+|+.-.+|.+.+++..               
T Consensus        21 ~~e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---------------   84 (248)
T PF06977_consen   21 LDELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---------------   84 (248)
T ss_dssp             -S-EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---------------
T ss_pred             cCCcc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---------------
Confidence            34577 9999986 568876544 4578888777  45443 22367899999888888887743               


Q ss_pred             cCCceEEEEeC--CCCeE-----EEeecCc-----cccceEEEcCCCCEEEEEecce---eEEeecCC-CCceeEE----
Q 018705          167 KPYGQLRKYDP--KLKET-----TVLHEGF-----YFANGIALSKNEDFVVVCESWK---RYWLKGDR-AGILDAF----  226 (351)
Q Consensus       167 ~~~g~l~~~d~--~~~~~-----~~~~~~~-----~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~-~~~~~~~----  226 (351)
                        .++|+.++.  .+..+     +.+.-++     ..--|+|+++.++.||++....   .|.+.... .......    
T Consensus        85 --~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~  162 (248)
T PF06977_consen   85 --DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD  162 (248)
T ss_dssp             --TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred             --CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence              346665543  22222     1111111     1235899999988888876544   34444311 0111100    


Q ss_pred             -e-cc-CCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEE
Q 018705          227 -I-EN-LPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII  302 (351)
Q Consensus       227 -~-~~-~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~  302 (351)
                       . .. .-.-+.++.+|+. |+|||=...                                    ...++.+|. +|++.
T Consensus       163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------------------------------s~~l~~~d~-~G~~~  205 (248)
T PF06977_consen  163 LDDDKLFVRDLSGLSYDPRTGHLLILSDE------------------------------------SRLLLELDR-QGRVV  205 (248)
T ss_dssp             HH-HT--SS---EEEEETTTTEEEEEETT------------------------------------TTEEEEE-T-T--EE
T ss_pred             cccccceeccccceEEcCCCCeEEEEECC------------------------------------CCeEEEECC-CCCEE
Confidence             0 00 0012567888765 578886543                                    237999999 99988


Q ss_pred             EEEECCCC-----CcccceeEEEEE-CCEEEEEecCCCeEEEEe
Q 018705          303 RDFNDPDA-----TYISFVTSAAEF-DGNLYLASLQSNFIGILP  340 (351)
Q Consensus       303 ~~~~~~~g-----~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~  340 (351)
                      ..+.-..|     ..+.+.-+++.+ +|+|||.+= .|..++|.
T Consensus       206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             EEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred             EEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence            87764433     223456677765 689999984 78888874

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.0021  Score=60.46  Aligned_cols=162  Identities=13%  Similarity=0.190  Sum_probs=90.7

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEcC-CEEEEEEcCCCeE--------EEEeecCC----------------cccc
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFILHNETL--------VNWKHIDS----------------QSLL   97 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~-g~I~~~d~~~g~~--------~~~~~~~~----------------~p~~   97 (351)
                      ++.+..+ +..|.+++..|++ .+.+.... |++..+.. .+..        .......+                .+. 
T Consensus        59 ~~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-  134 (399)
T COG2133          59 VEVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-  134 (399)
T ss_pred             ccccccc-ccCchhheecCCc-eEEEEccCCccEEEecC-CCcccccccccceEEeccCCCccceEecccccccceeee-
Confidence            4567777 8899999999765 66655544 76655542 2211        11111111                123 


Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEcC-C----C-eEEecC---C-CCCcccEEEccCCcEEEEeCCCc-cC----Ccccccc
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVTE-E----G-VEAIVP---D-ASFTNDVIAASDGTLYFTVASTK-YT----PTDFYKD  162 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~~-~----g-~~~l~~---~-~~~~n~l~~d~dG~ly~t~~~~~-~~----~~~~~~~  162 (351)
                      ++++ ..+.+|+++.. .+.+++. +    + ..++..   . ..+-..|+++|||.||++..+.. ..    .......
T Consensus       135 ~~a~-~~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk  212 (399)
T COG2133         135 GISE-PGGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGK  212 (399)
T ss_pred             EEEe-ecCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccc
Confidence            3333 23344554422 3444441 1    1 111211   1 14567799999999999987521 00    0001111


Q ss_pred             cccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       163 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      +++. ....++..|..+...+++..+..+|.|++++|....||+++.+.
T Consensus       213 ~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         213 VLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             eeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            1211 12345666666666778888999999999999955699998765

>PTZ00421 coronin; Provisional

Probab=98.16  E-value=0.0053  Score=60.26  Aligned_cols=136  Identities=18%  Similarity=0.183  Sum_probs=87.9

Q ss_pred             CceEEEee-CCCeEEEEEcCCEEEEEEcCCCe--------EEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC--
Q 018705           54 PEDVSVVV-SKGALYTATRDGWVKYFILHNET--------LVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE--  121 (351)
Q Consensus        54 pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~--  121 (351)
                      -.+++|+| ++..|.++..|+.|..||..++.        ...+........ .+++.+++ +++++....+.++++.  
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            45889987 45678889999999999875442        122222233455 88999875 5666655667777763  


Q ss_pred             CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--cccceEEE
Q 018705          122 EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIAL  197 (351)
Q Consensus       122 ~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi~~  197 (351)
                      ++  ...+......++++++.++|.+.++.+.                 ++.|..||+.+++........  .....+.+
T Consensus       157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w  219 (493)
T PTZ00421        157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLW  219 (493)
T ss_pred             CCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence            45  4444433356889999999988777654                 568999998877643222211  12234667


Q ss_pred             cCCCCEEEEE
Q 018705          198 SKNEDFVVVC  207 (351)
Q Consensus       198 ~~dg~~lyv~  207 (351)
                      .+++..++.+
T Consensus       220 ~~~~~~ivt~  229 (493)
T PTZ00421        220 AKRKDLIITL  229 (493)
T ss_pred             cCCCCeEEEE
Confidence            7777755443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.15  E-value=0.0025  Score=55.99  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=93.7

Q ss_pred             EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-e-EE-ecCC---
Q 018705           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA-IVPD---  130 (351)
Q Consensus        58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~-~~-l~~~---  130 (351)
                      ++. .++.+|++..++.|+.+|..+|+..--........ ....-.++.+|++...+.++.++ ++| . -. ....   
T Consensus        32 ~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   32 AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccc
Confidence            443 58999999999999999998997632222223323 33344577899988666799999 578 2 22 1111   


Q ss_pred             C--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc------------ceEE
Q 018705          131 A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA------------NGIA  196 (351)
Q Consensus       131 ~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~------------ngi~  196 (351)
                      .  .......++ ++.+|+....                  +.|+.+|+++|+....... ..+            ++-.
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~------------------g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~  169 (238)
T PF13360_consen  110 AGVRSSSSPAVD-GDRLYVGTSS------------------GKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSP  169 (238)
T ss_dssp             CSTB--SEEEEE-TTEEEEEETC------------------SEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEE
T ss_pred             cccccccCceEe-cCEEEEEecc------------------CcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccce
Confidence            1  122223333 4467776643                  6899999998877432222 221            1222


Q ss_pred             EcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          197 LSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      +..++ .+|++...+ .+.+ +...++.. .... ...........++.||++.
T Consensus       170 ~~~~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~-~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  170 VISDG-RVYVSSGDGRVVAV-DLATGEKL-WSKP-ISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             ECCTT-EEEEECCTSSEEEE-ETTTTEEE-EEEC-SS-ECECEECCCTEEEEEE
T ss_pred             EEECC-EEEEEcCCCeEEEE-ECCCCCEE-EEec-CCCccCCceeeCCEEEEEe
Confidence            33344 688887666 4555 33444432 2212 2222332344566788886

...

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.12  E-value=0.00028  Score=65.08  Aligned_cols=182  Identities=15%  Similarity=0.140  Sum_probs=108.7

Q ss_pred             CCCcCCCceEEEeeC--CCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--C
Q 018705           48 EGCVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E  122 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~  122 (351)
                      .|.-....++.|.|.  +..+-++..||.+..|+..+. .+..+.....+.. .++|.|+|+...+......++++.  +
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~t  292 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLET  292 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhccccc
Confidence            343344557777775  346778888998877776442 2234444446677 899999999988887777777774  3


Q ss_pred             CeEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcC
Q 018705          123 GVEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSK  199 (351)
Q Consensus       123 g~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~  199 (351)
                      +.+.+...  ...+.++++-+||.+-.|.+...               .|+||  |..+|+-..+. .......+|+|+|
T Consensus       293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---------------~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP  355 (459)
T KOG0272|consen  293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---------------LGRVW--DLRTGRCIMFLAGHIKEILSVAFSP  355 (459)
T ss_pred             chhhHhhcccccccceeEecCCCceeeccCccc---------------hhhee--ecccCcEEEEecccccceeeEeECC
Confidence            32222221  26789999999999988765421               23443  44455544433 3455567899999


Q ss_pred             CCCEEEEEecce--eEEeecCCCCceeEEe-ccCCCCCCceEECC-CCCEEEEEe
Q 018705          200 NEDFVVVCESWK--RYWLKGDRAGILDAFI-ENLPGGPDNINLAP-DGSFWIGLI  250 (351)
Q Consensus       200 dg~~lyv~~~~~--~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~-~G~lwva~~  250 (351)
                      +|-.|--+..++  ++|--  . ++.+++. .........+.+++ .|.+.++..
T Consensus       356 NGy~lATgs~Dnt~kVWDL--R-~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  356 NGYHLATGSSDNTCKVWDL--R-MRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             CceEEeecCCCCcEEEeee--c-ccccceecccccchhhheEecccCCeEEEEcc
Confidence            996333334444  67722  1 1112221 11112345578887 566666654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=0.00095  Score=62.32  Aligned_cols=180  Identities=14%  Similarity=0.149  Sum_probs=101.5

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE---eecCCccccceEEcCCCC-EEEEeCC-CCeEEEcC-CC-eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG-VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~---~~~~~~p~~gl~~d~~G~-L~v~d~~-~gl~~~~~-~g-~~  125 (351)
                      +-.++.|.|....+.++..||.+..+.. +|+....   ......|+....|.++|. ..++... .=+|.++- +. +.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEe-cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            4568899877778888888885444433 3443221   222344654677888886 3333322 23455552 44 44


Q ss_pred             EecCC----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705          126 AIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~~----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg  201 (351)
                      .+...    ........+++++.+.+....                 .|.|+.+..+|++...-..--....+++|+.|+
T Consensus       294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS  356 (514)
T ss_pred             cccCCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence            33222    146677789999886554432                 567888888777653322222345678999999


Q ss_pred             CEEEEEecceeEEeecCC-CCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWKRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~~~~i~~~~-~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +.||++...+.+|+-+-. ..-...+.+.-.-...-++.+.+|. |+|++.
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGS  406 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence            988887655544433221 1223445543111112356667777 666543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.0032  Score=60.83  Aligned_cols=177  Identities=14%  Similarity=0.097  Sum_probs=99.8

Q ss_pred             ceEEEeeCCCe---EEEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEE--c-CC
Q 018705           55 EDVSVVVSKGA---LYTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKV--T-EE  122 (351)
Q Consensus        55 e~i~~d~~~g~---lyv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~--~-~~  122 (351)
                      .+.+|+|++..   +|++..+  ..|+.++..+|+.+.+....+... ..++.+||+ |.++...   ..++..  + ..
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~  266 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLET  266 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence            35689977653   4576654  369999998887776665555555 788899994 4333321   134442  3 22


Q ss_pred             ---C-eEEecCCC-CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeEEEeecCccccce
Q 018705          123 ---G-VEAIVPDA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANG  194 (351)
Q Consensus       123 ---g-~~~l~~~~-~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~ng  194 (351)
                         | .+.+.... ......+++|||. |+++....               ....||+++.+  +++.+.+.........
T Consensus       267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~---------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~  331 (428)
T PRK01029        267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD---------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSC  331 (428)
T ss_pred             CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC---------------CCceEEEEECcccccceEEeccCCCCccc
Confidence               3 34443321 2335678999995 66554320               12258887653  3334444333233345


Q ss_pred             EEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 018705          195 IALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIG  248 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva  248 (351)
                      .+++|||+.|+++....   .+++-+...++.+.+... +....+..+.++|+ |+.+
T Consensus       332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEE
Confidence            78999999777754432   455544334444444322 22335578888887 4433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.07  E-value=0.0067  Score=58.42  Aligned_cols=166  Identities=12%  Similarity=0.041  Sum_probs=92.8

Q ss_pred             CeEEEEEc----CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC--EEEEeCC---CCeEEEcC-CC-eEEecCCCC
Q 018705           64 GALYTATR----DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG--VILCDNE---KGLLKVTE-EG-VEAIVPDAS  132 (351)
Q Consensus        64 g~lyv~~~----~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~--L~v~d~~---~gl~~~~~-~g-~~~l~~~~~  132 (351)
                      ..+|+...    ..+|+..|.+....+.+... + ++....+.++|+  ++++...   ..++.++. +| .+.+.....
T Consensus       156 r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g  233 (419)
T PRK04043        156 RKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG  233 (419)
T ss_pred             eEEEEEEccCCCcceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC
Confidence            44555442    23677777733333434333 3 332677889985  5554433   34888885 66 666654322


Q ss_pred             CcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          133 FTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       133 ~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ......++||| .+.++.+.               .....||.+|.++++.+.+...-.......++|||+.|++.....
T Consensus       234 ~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~  298 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL  298 (419)
T ss_pred             cEEeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC
Confidence            23345689999 57666542               113579999988887776654322222347999999888866443


Q ss_pred             ---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          212 ---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       212 ---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                         .+++-+...++.+.+...  +. .+..++++|+..+-.
T Consensus       299 g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        299 GYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYS  336 (419)
T ss_pred             CCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEE
Confidence               333333333444333211  11 235788999744433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.06  E-value=0.00073  Score=59.84  Aligned_cols=135  Identities=20%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eE
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~  125 (351)
                      -.-.|+|+.-  ++.+|.-+ .++..+.+|+++-+. ..+.. .+.-- ||+.|. ..||++|....++.+++..   .+
T Consensus        89 ~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGW-GLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen   89 RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGW-GLTSDG-KRLIMSDGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEECS-SCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred             cccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEec-CCcce-EEEcCC-CEEEEECCccceEEECCcccceEE
Confidence            3457888886  67788755 578888999866433 33322 34556 899663 3899999988899999743   22


Q ss_pred             Eec---CC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------------
Q 018705          126 AIV---PD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------  188 (351)
Q Consensus       126 ~l~---~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------  188 (351)
                      .+.   ..  ....|-+..- +|.||.....                 ...|.++||.+|++....+-            
T Consensus       164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~  225 (264)
T PF05096_consen  164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKS  225 (264)
T ss_dssp             EEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTS
T ss_pred             EEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccc
Confidence            221   11  1567777664 7899988765                 45899999999998765421            


Q ss_pred             ----ccccceEEEcCCCCEEEEEe
Q 018705          189 ----FYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       189 ----~~~~ngi~~~~dg~~lyv~~  208 (351)
                          ...-||||.+++.+.+||+-
T Consensus       226 ~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  226 RQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             T--TTS-EEEEEEETTTTEEEEEE
T ss_pred             ccccCCeeEeEeEeCCCCEEEEEe
Confidence                13478999999999999975

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.03  E-value=0.003  Score=56.24  Aligned_cols=181  Identities=11%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeE-EEEeec-CCccccceEEcCCCCEEEEeCCCC-e--EEEcCCC-
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-L--LKVTEEG-  123 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~-~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~g-l--~~~~~~g-  123 (351)
                      ...-.+++++|+.+.||+.+. .-.|+.++. +|.+ +++.-. -..|- +|.+-.+|+.-+++...+ +  +.+++++ 
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            344679999999999997554 447888887 5654 444222 24577 787777776666765543 3  3334443 


Q ss_pred             eEEecC-----C-----CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-----
Q 018705          124 VEAIVP-----D-----ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----  187 (351)
Q Consensus       124 ~~~l~~-----~-----~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----  187 (351)
                      ......     +     .....+++.|+.+ ++||+-...                .-+|+.++...........     
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEecCCcccccccccCccc
Confidence            222111     0     1467899999964 788875421                1145555432211111000     


Q ss_pred             --C--ccccceEEEcCCCCEEEE-Eeccee-EEe--ecCCCCceeE------EeccCCCCCCceEECCCCCEEEEEe
Q 018705          188 --G--FYFANGIALSKNEDFVVV-CESWKR-YWL--KGDRAGILDA------FIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       188 --~--~~~~ngi~~~~dg~~lyv-~~~~~~-~~i--~~~~~~~~~~------~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                        +  +.-..|+.+++..+.|+| ++..++ .-+  .+...+....      +....| .+.|+++|++|+|||...
T Consensus       227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSE  302 (316)
T COG3204         227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEec
Confidence              0  112345667654444444 555542 222  2211111111      111233 368899999999999854

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=98.02  E-value=0.0012  Score=65.33  Aligned_cols=193  Identities=15%  Similarity=0.182  Sum_probs=118.1

Q ss_pred             CCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705           92 DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        92 ~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      ++..+ |..|.|+.++.+.-+..+-+|++- + -  ...+.....-+.++.+.|.|..|+|.+.               .
T Consensus       451 ~GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---------------D  514 (707)
T KOG0263|consen  451 SGPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---------------D  514 (707)
T ss_pred             CCcee-eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---------------C
Confidence            35567 999999999888877777777773 2 2  3334444344667889999855544433               2


Q ss_pred             CCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705          168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      ...+||..|- +.-.+.++..+.-.+++.|+|+.+++.-.+.++  |+|-.. +...+++|.. ..+....+++++.|+.
T Consensus       515 ~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~G-H~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  515 QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTG-HKGPVTALAFSPCGRY  591 (707)
T ss_pred             ceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEecC-CCCceEEEEEcCCCce
Confidence            2457887764 344556666677788899999987443333333  788552 2345677763 4444567899999975


Q ss_pred             EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC
Q 018705          246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG  324 (351)
Q Consensus       246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g  324 (351)
                      .++...                                    .+.|..+|-.+|+.+..+-++.+    .+.++.+. +|
T Consensus       592 LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~dg  631 (707)
T KOG0263|consen  592 LASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRDG  631 (707)
T ss_pred             Eeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecCC
Confidence            554322                                    23455666656666665544433    35555543 44


Q ss_pred             EEEEEecCCCeEEEEeCCC
Q 018705          325 NLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       325 ~L~ig~~~~~~i~~~~~~~  343 (351)
                      .+.+.....+.+..+++..
T Consensus       632 ~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  632 NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CEEEecCCCCeEEEEEchh
Confidence            5555444466666666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.01  E-value=0.0025  Score=56.44  Aligned_cols=176  Identities=15%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--CCC
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG  123 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g  123 (351)
                      .|.-..-.+..+- +++.+.+++.|.....||..+|+. +.|....+... +|.+.| +++.||.-.-....+++  +++
T Consensus       142 ~gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~  219 (343)
T KOG0286|consen  142 AGHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSG  219 (343)
T ss_pred             cCccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCc
Confidence            3333334455565 588999999999999999888754 55655567777 888888 88999987666666666  355


Q ss_pred             --eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecC--ccccceEEEc
Q 018705          124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEG--FYFANGIALS  198 (351)
Q Consensus       124 --~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~--~~~~ngi~~~  198 (351)
                        ++.+......+|.+.+-|+|.-+.|.+.                 ++....||... .++..+...  ....+.++||
T Consensus       220 ~c~qtF~ghesDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  220 QCVQTFEGHESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             ceeEeecccccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence              7778777788999999999987777654                 34444555433 344444322  2346789999


Q ss_pred             CCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705          199 KNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  244 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~  244 (351)
                      ..|+.||....+.  ..|=. .+..+...+. +.......+...+||.
T Consensus       283 ~SGRlLfagy~d~~c~vWDt-lk~e~vg~L~-GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  283 KSGRLLFAGYDDFTCNVWDT-LKGERVGVLA-GHENRVSCLGVSPDGM  328 (343)
T ss_pred             ccccEEEeeecCCceeEeec-cccceEEEee-ccCCeeEEEEECCCCc
Confidence            9999666654433  44521 1222222222 2222234455666764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.99  E-value=0.0085  Score=52.53  Aligned_cols=210  Identities=17%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             CCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCC-CCCcccEEEccCCcEE
Q 018705           72 DGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPD-ASFTNDVIAASDGTLY  146 (351)
Q Consensus        72 ~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~-~~~~n~l~~d~dG~ly  146 (351)
                      +|.|..+|+.+|+..--...   ...+. ...+..++.+|+++..+.++.++. +|....... .........-.++.+|
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence            57788899878865321111   11111 124546789999988888999995 882221111 1111111244566788


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCc----cccceEEEcCCCCEEEEEecceeEEeecCCCC
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF----YFANGIALSKNEDFVVVCESWKRYWLKGDRAG  221 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~----~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~  221 (351)
                      +....                  +.|+.+|..+|+..... ...    ..........+++.+|++...+.+..-+...|
T Consensus        81 v~~~~------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG  142 (238)
T PF13360_consen   81 VGTSD------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG  142 (238)
T ss_dssp             EEETT------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred             cccce------------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence            87643                  57999998888765432 111    11111222223556888775442222223334


Q ss_pred             ceeEEec-cCCCCCC---------ceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEE
Q 018705          222 ILDAFIE-NLPGGPD---------NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  291 (351)
Q Consensus       222 ~~~~~~~-~~~g~pd---------~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  291 (351)
                      +..-... ..+....         +-..-.+|.+|++...                                     +.+
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------------------------g~~  185 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-------------------------------------GRV  185 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-------------------------------------SSE
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-------------------------------------CeE
Confidence            4321111 1110000         1112234578887543                                     125


Q ss_pred             EEEECCCCeEEEEEECCCCCcccceeE-EEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          292 VKVDGNDGKIIRDFNDPDATYISFVTS-AAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       292 ~~~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      +.+|.++|+.+  +..+..    .... ....++.||+++ ..+.+..+++.+-
T Consensus       186 ~~~d~~tg~~~--w~~~~~----~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  186 VAVDLATGEKL--WSKPIS----GIYSLPSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             EEEETTTTEEE--EEECSS-----ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             EEEECCCCCEE--EEecCC----CccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence            66788677754  222211    1233 445789999999 6899999998764

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0059  Score=59.06  Aligned_cols=154  Identities=11%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC---CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-E
Q 018705           73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-L  145 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~---~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-l  145 (351)
                      ..|+.+|.++...+.+........ ..+++++|+ |..+...   ..++..+. +| .+.+.........++++|||+ |
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            356666764333333333223345 788999996 3333222   23666664 55 555443222344688999995 5


Q ss_pred             EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEEeecCCCCc
Q 018705          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYWLKGDRAGI  222 (351)
Q Consensus       146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~i~~~~~~~  222 (351)
                      +++....               ..-.||.+|.++++.+.+..........+++|||+.++++.. .+  ++|.-+...+.
T Consensus       263 a~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        263 AFASSKD---------------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             EEEEecC---------------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            5543220               112589999887777666544334556899999997777543 23  55543322222


Q ss_pred             eeEEeccCCCCCCceEECCCCCEE
Q 018705          223 LDAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       223 ~~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      .+.. .. .+  .+..++++|+..
T Consensus       328 ~~~l-~~-~~--~~~~~SpDG~~i  347 (429)
T PRK01742        328 ASLV-GG-RG--YSAQISADGKTL  347 (429)
T ss_pred             eEEe-cC-CC--CCccCCCCCCEE
Confidence            3332 11 12  345677888743

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.0035  Score=56.11  Aligned_cols=196  Identities=15%  Similarity=0.166  Sum_probs=108.0

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~  128 (351)
                      ..+++.|++-+..|-+|..+|+|+.||..+-...+.....-+|...++..++|+..++.+..-.+..+  .+|  .+.+.
T Consensus        25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            38899999777788899999999999986654432222234565489999999988877665444444  244  22221


Q ss_pred             --CCC-------------------CCcccEEEcc----------CCcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705          129 --PDA-------------------SFTNDVIAAS----------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (351)
Q Consensus       129 --~~~-------------------~~~n~l~~d~----------dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  177 (351)
                        ...                   ..|.=+.+++          +|.+=.+.+..-|.  +.-.-++.|+..|.+..||.
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc--CCCCEEEEecCcceEEEEec
Confidence              100                   1222222221          11111111100010  01123556777889999998


Q ss_pred             CCCeEEEee--cCccccceEEEcCCCCEEEEEecce---eEEeec----CCCCceeE---EeccCCCCC-CceEECCCCC
Q 018705          178 KLKETTVLH--EGFYFANGIALSKNEDFVVVCESWK---RYWLKG----DRAGILDA---FIENLPGGP-DNINLAPDGS  244 (351)
Q Consensus       178 ~~~~~~~~~--~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~----~~~~~~~~---~~~~~~g~p-d~i~~d~~G~  244 (351)
                      .+-+...-.  ........|.++..|+++.+..+++   .|.+.+    .+.+.++.   +.+-..-.+ ...+++.+|.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            765432211  1123445688999999888887777   355442    12233331   111000011 4578999997


Q ss_pred             EEEEEe
Q 018705          245 FWIGLI  250 (351)
Q Consensus       245 lwva~~  250 (351)
                      +.+|..
T Consensus       263 Yv~a~s  268 (405)
T KOG1273|consen  263 YVCAGS  268 (405)
T ss_pred             EEEecc
Confidence            776654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.91  E-value=0.011  Score=58.74  Aligned_cols=219  Identities=15%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEecCC--CCCcccEE
Q 018705           64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIVPD--ASFTNDVI  138 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l~~~--~~~~n~l~  138 (351)
                      ..|.++...|....+..-+-...+....+..+...++++..|. |-++-..-|-+.++. .. ..++..+  ....+.++
T Consensus       278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA  357 (893)
T ss_pred             eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence            3344455555443443322222232333333332667766664 333333323333332 11 2222222  36789999


Q ss_pred             EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEecce--eEEe
Q 018705          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i  215 (351)
                      .+|||.+.+|-..                 +|.|-.||...|.-.+ +.+.-....++.|+..|+.++-+..++  |.|=
T Consensus       358 YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  358 YSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            9999998887654                 6789999977665433 334445667899999999777777666  5441


Q ss_pred             ecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE
Q 018705          216 KGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD  295 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  295 (351)
                      - .+....+.|....|-.-..++.|+.|.|-++.....                                   =.+..++
T Consensus       421 l-kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~-----------------------------------F~IfvWS  464 (893)
T KOG0291|consen  421 L-KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS-----------------------------------FEIFVWS  464 (893)
T ss_pred             e-cccceeeeecCCCceeeeEEEEcCCCCEEEeeccce-----------------------------------EEEEEEE
Confidence            1 123345556543333345678999999877754310                                   1356666


Q ss_pred             CCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEEe
Q 018705          296 GNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILP  340 (351)
Q Consensus       296 ~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~  340 (351)
                      -++|+.+..+.+++|.    ++++..  ++.-|+-+++ ...|.+++
T Consensus       465 ~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SW-DkTVRiW~  506 (893)
T KOG0291|consen  465 VQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSW-DKTVRIWD  506 (893)
T ss_pred             eecCeeeehhcCCCCc----ceeeEEccccCeEEeccc-cceEEEEE
Confidence            6688888888777763    444443  3455666666 44455554

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.89  E-value=0.0003  Score=69.17  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=47.2

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCc--cc-----ccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCC
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPT--DF-----YKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNED  202 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~--~~-----~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~  202 (351)
                      ..|..|++|++|+|||.+........  ..     ...+...... .++.+++.+++++.+...  .....|++++||++
T Consensus       436 ~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~  514 (524)
T PF05787_consen  436 ASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGR  514 (524)
T ss_pred             CCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccceECCCCC
Confidence            78999999999999998764322110  00     0001001111 156667888888776643  34567899999999


Q ss_pred             EEEEE
Q 018705          203 FVVVC  207 (351)
Q Consensus       203 ~lyv~  207 (351)
                      +||++
T Consensus       515 tlFvn  519 (524)
T PF05787_consen  515 TLFVN  519 (524)
T ss_pred             EEEEE
Confidence            98885

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.89  E-value=0.00041  Score=59.59  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             EEeeCCCeEEEEEc----------CCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCC-Ce--EEEc-CC
Q 018705           58 SVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEK-GL--LKVT-EE  122 (351)
Q Consensus        58 ~~d~~~g~lyv~~~----------~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~-gl--~~~~-~~  122 (351)
                      -+|| +|++|.|+.          .|.++++-+ .++++.+...-+-++ ||+.|.+. ..|+.|+.+ .+  +.++ ++
T Consensus       115 kvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~t  191 (310)
T KOG4499|consen  115 KVDP-DGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPT  191 (310)
T ss_pred             ccCC-CCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCc
Confidence            3553 566777652          355555554 666665544445678 99999665 678887654 34  4444 45


Q ss_pred             C-e---EEe---cC----CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCcc
Q 018705          123 G-V---EAI---VP----DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFY  190 (351)
Q Consensus       123 g-~---~~l---~~----~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~  190 (351)
                      | +   +.+   ..    ....|.++++|.+|+||++...                 .++|+++||.||++-.- .-.-.
T Consensus       192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~  254 (310)
T KOG4499|consen  192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTP  254 (310)
T ss_pred             ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCC
Confidence            5 2   111   11    1168999999999999999865                 57899999999875321 11112


Q ss_pred             ccceEEEc-CCCCEEEEEec
Q 018705          191 FANGIALS-KNEDFVVVCES  209 (351)
Q Consensus       191 ~~ngi~~~-~dg~~lyv~~~  209 (351)
                      .....||. ++-+.+|++..
T Consensus       255 qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  255 QITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ceEEEEecCCCccEEEEEeh
Confidence            23345553 33345666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.88  E-value=0.016  Score=51.46  Aligned_cols=202  Identities=12%  Similarity=0.142  Sum_probs=108.9

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCC---CeEEEc
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEK---GLLKVT  120 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~---gl~~~~  120 (351)
                      ++..|.+..--++.|.++..++..++.||++..||.-+. |...+.-+..... ..|+.|.|+...+..-.   .+|.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence            555666666678889877788889999999999997654 4444444555566 78888999888775433   244444


Q ss_pred             -C--CC-e---EEecCCCCCcccEEEccCCcEEEEeCCCc----cCCc---------ccccc-------------ccccc
Q 018705          121 -E--EG-V---EAIVPDASFTNDVIAASDGTLYFTVASTK----YTPT---------DFYKD-------------MAEGK  167 (351)
Q Consensus       121 -~--~g-~---~~l~~~~~~~n~l~~d~dG~ly~t~~~~~----~~~~---------~~~~~-------------~~~~~  167 (351)
                       +  +| .   +.+.....+..+..+-+|+.|. |.++..    +.+.         .+..+             ...+.
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence             2  34 2   2232222333333333344332 111100    0000         00000             11122


Q ss_pred             CCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEecc-CCCCCCceEECC
Q 018705          168 PYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIEN-LPGGPDNINLAP  241 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~  241 (351)
                      .+..-..||...+.. +.+...-.-.|.|.|.|+|. -+.+-+..    .|.+..  ..+..+|... .......+.++.
T Consensus       207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa--D~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA--DQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             cccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecC--CcEEeeeccCcccCCceeEEEcc
Confidence            233445566544433 33344445678899999997 45544433    355542  1233444321 112235578999


Q ss_pred             CCCEEEEEec
Q 018705          242 DGSFWIGLIK  251 (351)
Q Consensus       242 ~G~lwva~~~  251 (351)
                      .|+|..+.+.
T Consensus       284 SGRlLfagy~  293 (343)
T KOG0286|consen  284 SGRLLFAGYD  293 (343)
T ss_pred             cccEEEeeec
Confidence            9998887654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.00079  Score=60.21  Aligned_cols=149  Identities=13%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---------cCCccccceEEcCCCCEEEEeCCCCeEE
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---------IDSQSLLGLTTTKDGGVILCDNEKGLLK  118 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---------~~~~p~~gl~~d~~G~L~v~d~~~gl~~  118 (351)
                      -|+-..+|+-.|+|+++.|..++.||-|-.|+..+|+++.-..         ...... .|.|.+|.....+....|-++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence            3556789999999888888889999999999988887753211         112234 777877777776666667777


Q ss_pred             EcC--CC--eEEecC-CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEE-eCCCCeE-EEeecCccc
Q 018705          119 VTE--EG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKET-TVLHEGFYF  191 (351)
Q Consensus       119 ~~~--~g--~~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~~-~~~~~~~~~  191 (351)
                      +++  +|  .+.+.. ....+..+.++.|+.-.++.+.                  ....|+ ..++|+. +.+-..-.+
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSy  350 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSY  350 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCcccc
Confidence            773  55  444421 1146677788888754444332                  122222 2333432 222333467


Q ss_pred             cceEEEcCCCCEEEEEecce--eEEe
Q 018705          192 ANGIALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~--~~~i  215 (351)
                      .|-..+++||+.+.-+++++  ++|-
T Consensus       351 vn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             ccceEEcCCCCeEEEecCCccEEEec
Confidence            88899999999777777776  7773

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.88  E-value=0.0041  Score=55.14  Aligned_cols=155  Identities=18%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCCCEEEEEec
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      .+..++.+..+|.+|-++..  |+             ...|.++|+++|++...  ...-.+..||++..|  .||.-..
T Consensus        45 aFTQGL~~~~~g~LyESTG~--yG-------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW  107 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGL--YG-------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW  107 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECS--TT-------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred             ccCccEEecCCCEEEEeCCC--CC-------------cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence            68889999999999999875  21             23699999999986432  234458889999865  4877655


Q ss_pred             ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ..  .+..+-.+......|.  .++-.-|++.|. .+||++.++                                    
T Consensus       108 k~~~~f~yd~~tl~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS------------------------------------  148 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS------------------------------------  148 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE---SSS--EEEECS-SCEEEE-SS------------------------------------
T ss_pred             cCCeEEEEccccceEEEEEe--cCCcceEEEcCC-CEEEEECCc------------------------------------
Confidence            44  2333322333333332  233345788763 479999765                                    


Q ss_pred             ceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          288 GARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                       ..+..+||++-+....+.. .+|.+...+..+...+|.+|.--+..+.|.+++..+
T Consensus       149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence             2578889855566666654 245667778888888999999999999999999654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00044  Score=61.80  Aligned_cols=227  Identities=19%  Similarity=0.256  Sum_probs=127.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeec-CCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      -.+|.|+++...+-.|..||+|-.|.-.+|. .++|... ..-.. .+.|.+|+.-....+....+|+.  +.|  .+.+
T Consensus       266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf  344 (508)
T KOG0275|consen  266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF  344 (508)
T ss_pred             eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence            4578888777888888999988777665663 3344211 12234 78888888655555555677776  455  5555


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---ccccceEEEcC-CCCE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---FYFANGIALSK-NEDF  203 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngi~~~~-dg~~  203 (351)
                      .....++|...+.+||.-.++.++                 +|.|-.|+.++++.......   -...|.+.+-| +-..
T Consensus       345 rGHsSyvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh  407 (508)
T KOG0275|consen  345 RGHSSYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH  407 (508)
T ss_pred             cCccccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence            554578999999999988888776                 56788888776553211111   11233444333 3234


Q ss_pred             EEEEecce-eEEeecCCCCceeEEeccC-C-CCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcc
Q 018705          204 VVVCESWK-RYWLKGDRAGILDAFIENL-P-GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  280 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~-~-g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
                      +.|++..+ .|-++ -...-++.|..+. . |---+.+.++.|. |+=+.                              
T Consensus       408 ~iVCNrsntv~imn-~qGQvVrsfsSGkREgGdFi~~~lSpkGe-wiYci------------------------------  455 (508)
T KOG0275|consen  408 FIVCNRSNTVYIMN-MQGQVVRSFSSGKREGGDFINAILSPKGE-WIYCI------------------------------  455 (508)
T ss_pred             EEEEcCCCeEEEEe-ccceEEeeeccCCccCCceEEEEecCCCc-EEEEE------------------------------
Confidence            55666555 33332 1111123333211 1 1111234556664 22211                              


Q ss_pred             cCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEE
Q 018705          281 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGIL  339 (351)
Q Consensus       281 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~  339 (351)
                           ++.+.+++|+-..|+....+...+-    .+.++..+..+=.+.++..+++.++
T Consensus       456 -----gED~vlYCF~~~sG~LE~tl~VhEk----dvIGl~HHPHqNllAsYsEDgllKL  505 (508)
T KOG0275|consen  456 -----GEDGVLYCFSVLSGKLERTLPVHEK----DVIGLTHHPHQNLLASYSEDGLLKL  505 (508)
T ss_pred             -----ccCcEEEEEEeecCceeeeeecccc----cccccccCcccchhhhhcccchhhh
Confidence                 3345678887767777666655442    2344555555555667767766554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.80  E-value=0.032  Score=53.26  Aligned_cols=192  Identities=15%  Similarity=0.140  Sum_probs=101.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eE
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VE  125 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~  125 (351)
                      -.++.++|++..+-....||+|+.+|.++|+.. .+.   ...+..+ +|...||+.-+++-+...-.+++.  +.  ++
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            358899976555556678999999998888653 333   2234566 888888887666555555555552  22  33


Q ss_pred             EecCCC---------CCccc--EEEccCCcE-EEEeCCCc--cCC------------cccccccccccCCceEEEEeCCC
Q 018705          126 AIVPDA---------SFTND--VIAASDGTL-YFTVASTK--YTP------------TDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       126 ~l~~~~---------~~~n~--l~~d~dG~l-y~t~~~~~--~~~------------~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                      ++.-..         -..++  |.++-+|.| |+.-....  ..+            ......++.+.-+|.|..|+-.+
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence            332110         11222  233334433 11111000  000            00001133445578899998777


Q ss_pred             CeEEEeecC--ccccceEEEcCCCCEEEEEeccee---EEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          180 KETTVLHEG--FYFANGIALSKNEDFVVVCESWKR---YWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       180 ~~~~~~~~~--~~~~ngi~~~~dg~~lyv~~~~~~---~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      |.-..+...  -....+++.+..+. ++....+..   +.+.+......+.+  .+...|-+++..++|.+-+-.
T Consensus       352 g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~d~~~avv~  423 (603)
T KOG0318|consen  352 GTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLSDGGTAVVA  423 (603)
T ss_pred             ccccccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccccee--ecCCCceeEEEcCCCCEEEEE
Confidence            655444321  22356777777665 666665553   33332222222221  345578899999988644443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.79  E-value=0.0029  Score=54.92  Aligned_cols=141  Identities=12%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             EEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eEEecCCCCC
Q 018705           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VEAIVPDASF  133 (351)
Q Consensus        57 i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~~l~~~~~~  133 (351)
                      +.|-..+..+..+..++.|..||..+|+...-......+. .+-+.++|++.....+.++.-.+++.   ++.+..+ ..
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~n  226 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CN  226 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc-cc
Confidence            3444345566666778889999998886654444555666 89999999988776665555545433   3333222 45


Q ss_pred             cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-c-CccccceEEEcCCCCEEEEEec-c
Q 018705          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-E-GFYFANGIALSKNEDFVVVCES-W  210 (351)
Q Consensus       134 ~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~-~~~~~ngi~~~~dg~~lyv~~~-~  210 (351)
                      +++..+.|+-.+|++-..                 +..+++||-.||+-.... . ...-..++.|+|||. +|-+-+ +
T Consensus       227 V~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED  288 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED  288 (334)
T ss_pred             cccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence            666677888888887654                 457999998887644332 2 233456899999997 777443 3


Q ss_pred             e--eEEeec
Q 018705          211 K--RYWLKG  217 (351)
Q Consensus       211 ~--~~~i~~  217 (351)
                      +  |+|...
T Consensus       289 GTirlWQt~  297 (334)
T KOG0278|consen  289 GTIRLWQTT  297 (334)
T ss_pred             ceEEEEEec
Confidence            3  888764

>PTZ00421 coronin; Provisional

Probab=97.77  E-value=0.049  Score=53.54  Aligned_cols=101  Identities=7%  Similarity=0.011  Sum_probs=65.3

Q ss_pred             CccccceEEcC-CCCEEEEeCCCCeEEEc--CCC-e--------EEecCCCCCcccEEEccCC-cEEEEeCCCccCCccc
Q 018705           93 SQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG-V--------EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDF  159 (351)
Q Consensus        93 ~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g-~--------~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~  159 (351)
                      +... ++++++ +++++++....+.++++  +++ .        ..+......+..+++.|++ ++.++.+.        
T Consensus        76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~--------  146 (493)
T PTZ00421         76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA--------  146 (493)
T ss_pred             CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC--------
Confidence            4456 899998 77776666666777766  222 1        2222222567889999875 56666543        


Q ss_pred             ccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecce
Q 018705          160 YKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       160 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                               ++.|..||..+++...... .....++++++++|+.+..+..++
T Consensus       147 ---------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg  190 (493)
T PTZ00421        147 ---------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK  190 (493)
T ss_pred             ---------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence                     4678899987776543332 233467899999998666665555

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.75  E-value=0.00046  Score=64.33  Aligned_cols=148  Identities=14%  Similarity=0.230  Sum_probs=83.5

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEcCCC-e-EEecC--C-----CCCcccEEEccC----CcEEEEeCCCccCCccc
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-V-EAIVP--D-----ASFTNDVIAASD----GTLYFTVASTKYTPTDF  159 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~-~~l~~--~-----~~~~n~l~~d~d----G~ly~t~~~~~~~~~~~  159 (351)
                      .+|. +|++.++|++||++..+.++.+.++| . ..+..  .     ....-+++++|+    +.||+..+.....    
T Consensus         2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~----   76 (331)
T PF07995_consen    2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED----   76 (331)
T ss_dssp             SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS----
T ss_pred             CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC----
Confidence            3578 99999999999999866677777666 4 33322  1     167788999994    8899876531000    


Q ss_pred             ccccccccCCceEEEEeCCCC--e---EEEeec-------CccccceEEEcCCCCEEEEEecce---------------e
Q 018705          160 YKDMAEGKPYGQLRKYDPKLK--E---TTVLHE-------GFYFANGIALSKNEDFVVVCESWK---------------R  212 (351)
Q Consensus       160 ~~~~~~~~~~g~l~~~d~~~~--~---~~~~~~-------~~~~~ngi~~~~dg~~lyv~~~~~---------------~  212 (351)
                           ......+|.++..+.+  .   .+.+..       ......+|+|+||| .||++--..               .
T Consensus        77 -----~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   77 -----GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             -----SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             -----CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence                 0011235666643322  1   222221       23445679999999 599964322               2


Q ss_pred             EEeecC-C-----------CCceeEEeccCCCCCCceEECCC-CCEEEEEecC
Q 018705          213 YWLKGD-R-----------AGILDAFIENLPGGPDNINLAPD-GSFWIGLIKM  252 (351)
Q Consensus       213 ~~i~~~-~-----------~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~  252 (351)
                      +.+... +           ....++++.++. .|-++++|+. |+||++....
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-S
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCC
Confidence            333310 0           012355554433 2667899999 9999998543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.74  E-value=0.034  Score=50.81  Aligned_cols=148  Identities=9%  Similarity=0.034  Sum_probs=89.7

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-e-EEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-V-EAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~-~~l~~~  130 (351)
                      +++.+|....+-+|..|..-+.|+..+|.+- .......... .+.|..+|.+.++..-.|.+++.+  +| . -.+...
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e  147 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE  147 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence            5566664445556777888888888777642 2222334455 888999998887765567777773  44 2 222222


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ...+.-+...|.+.+.++-+.                 +|.+|+|.-.. +..+++...-...+.=.|.|||+++.....
T Consensus       148 ~~dieWl~WHp~a~illAG~~-----------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGST-----------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             cCceEEEEecccccEEEeecC-----------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence            234444566677766665443                 68899997554 444444433222333467899998888777


Q ss_pred             ce--eEEeecCCCCce
Q 018705          210 WK--RYWLKGDRAGIL  223 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~  223 (351)
                      ++  +.|  +++.++.
T Consensus       211 dgti~~W--n~ktg~p  224 (399)
T KOG0296|consen  211 DGTIIVW--NPKTGQP  224 (399)
T ss_pred             CceEEEE--ecCCCce
Confidence            66  555  3444544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.71  E-value=0.074  Score=55.69  Aligned_cols=140  Identities=11%  Similarity=-0.012  Sum_probs=85.7

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCC----eEE----EEeecCCccccceEEcCC-CCEEEEeCCCCeEEEcC--C
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNE----TLV----NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVTE--E  122 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g----~~~----~~~~~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~~~--~  122 (351)
                      -.+++|++++..+.++..++.|..|+..+.    ...    .......... ++++++. +...++....+.++++.  +
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            357899977777888899999999986321    110    0011122344 7777753 55655555667777763  4


Q ss_pred             C--eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEc-
Q 018705          123 G--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS-  198 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~-  198 (351)
                      +  ...+......+.++++++ +|.++++.+.                 ++.|..||..+++.............+.++ 
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  627 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCVQFPS  627 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence            4  444433336788999986 6777777654                 567888887765543222222344566774 


Q ss_pred             CCCCEEEEEecce
Q 018705          199 KNEDFVVVCESWK  211 (351)
Q Consensus       199 ~dg~~lyv~~~~~  211 (351)
                      ++++.+.++..++
T Consensus       628 ~~g~~latgs~dg  640 (793)
T PLN00181        628 ESGRSLAFGSADH  640 (793)
T ss_pred             CCCCEEEEEeCCC
Confidence            5677666666555

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.69  E-value=0.028  Score=49.32  Aligned_cols=66  Identities=15%  Similarity=0.137  Sum_probs=46.1

Q ss_pred             EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC-CC
Q 018705           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG  123 (351)
Q Consensus        58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~-~g  123 (351)
                      ..|+++|.+|++++|+..+.+|+.+..-..-.+.++....+-++++ ++.||++...+.++++++ ++
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            4566789999999999999999865543222222222211455665 889999998888888885 55

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.68  E-value=0.1  Score=54.72  Aligned_cols=176  Identities=11%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             CceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC--CC--eEE
Q 018705           54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE--EG--VEA  126 (351)
Q Consensus        54 pe~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~--~g--~~~  126 (351)
                      ..++++.+. +..+.++..+|.|..||..+++. ..+........ ++++++ ++.++++....+.++++.  ++  ...
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            356777753 45677888899999999876654 33333334456 899985 778777766677777773  44  333


Q ss_pred             ecCCCCCcccEEEc-cCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCE
Q 018705          127 IVPDASFTNDVIAA-SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       127 l~~~~~~~n~l~~d-~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      +... ..+..+.+. ++|..+++.+.                 +|.|..||..+++.  ..+.........+.+. ++..
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~  674 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST  674 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence            3322 345566664 45766665543                 57899998765432  2222222334567776 5665


Q ss_pred             EEEEecce--eEEeecCC-----CCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          204 VVVCESWK--RYWLKGDR-----AGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~~-----~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ++.+..++  ++|--...     ......+. ........+.++++|.+.++..
T Consensus       675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        675 LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence            66666555  56632110     01112222 1122234467888887665543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.66  E-value=0.00016  Score=53.19  Aligned_cols=54  Identities=20%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             ceEEcCC-CCEEEEeCC------------------CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCC
Q 018705           98 GLTTTKD-GGVILCDNE------------------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVAS  151 (351)
Q Consensus        98 gl~~d~~-G~L~v~d~~------------------~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~  151 (351)
                      +++++++ |.+|+++..                  ++++++++ ++ .+++.++..+||+|++++|+. +.|+++.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~   77 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG   77 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence            6778877 888888753                  25889997 66 788888889999999999995 7888865

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.65  E-value=0.0063  Score=60.01  Aligned_cols=168  Identities=16%  Similarity=0.229  Sum_probs=89.8

Q ss_pred             ccCceEecCCCcCCCceEEE---eeCCCeEEEEEc--CCEEEEEEcCCCeEEEE-------eecCCccccceEEcCCCCE
Q 018705           40 MKGLTKLGEGCVNHPEDVSV---VVSKGALYTATR--DGWVKYFILHNETLVNW-------KHIDSQSLLGLTTTKDGGV  107 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~---d~~~g~lyv~~~--~g~I~~~d~~~g~~~~~-------~~~~~~p~~gl~~d~~G~L  107 (351)
                      -....+-+.|. ..-|.+++   ++....+|.+..  ++.|||+-++ ......       ....+..+ ...+..+|.+
T Consensus       233 ~~p~K~tAlGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~-~~~~~~~~~~~~~ll~~GtLy-aak~~~~g~~  309 (524)
T PF05787_consen  233 STPVKRTALGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSD-KPWDPGDRAANRDLLDEGTLY-AAKFNQDGTG  309 (524)
T ss_pred             CCccceeeccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecC-CCCCCcccchhhhhhhCCEec-eEEECCCCcE
Confidence            33445566774 56799999   755667888653  5678888652 222100       01223344 4444444433


Q ss_pred             -EEEeCCC--CeEEEc--CC-C-e----EEe-----cCCCCCcccEEEccC-CcEEEEeCCCccC-Ccc-cccccccccC
Q 018705          108 -ILCDNEK--GLLKVT--EE-G-V----EAI-----VPDASFTNDVIAASD-GTLYFTVASTKYT-PTD-FYKDMAEGKP  168 (351)
Q Consensus       108 -~v~d~~~--gl~~~~--~~-g-~----~~l-----~~~~~~~n~l~~d~d-G~ly~t~~~~~~~-~~~-~~~~~~~~~~  168 (351)
                       ||--...  .+....  .+ . +    +.-     +....+|.++.+++. |.+||+.+...-. ... ..........
T Consensus       310 ~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~  389 (524)
T PF05787_consen  310 EWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNG  389 (524)
T ss_pred             EEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCc
Confidence             4322111  011000  00 0 0    000     111278999999995 7999987642100 000 0011112345


Q ss_pred             CceEEEEeCCCC-------eEEEee------------------cCccccceEEEcCCCCEEEEEecce
Q 018705          169 YGQLRKYDPKLK-------ETTVLH------------------EGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       169 ~g~l~~~d~~~~-------~~~~~~------------------~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .|.|++|++..+       +.+.+.                  ..+.+|++|+++++|+ |||++-..
T Consensus       390 ~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~  456 (524)
T PF05787_consen  390 YGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGG  456 (524)
T ss_pred             ccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCC
Confidence            688999998755       333322                  1256899999999998 89877554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.62  E-value=0.002  Score=58.91  Aligned_cols=184  Identities=16%  Similarity=0.162  Sum_probs=106.2

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceE-----------EcCCC-----
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLT-----------TTKDG-----  105 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~-----------~d~~G-----  105 (351)
                      ..+...|.-..-.++.+. .+|.+|.++.|+.|-.|+..+|+.- .+.......+ .|+           ||+.|     
T Consensus       239 ~~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             EEEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCC
Confidence            444555655566788887 6899999999999999998777542 1111111111 111           22222     


Q ss_pred             --------------------CEEEEeCCCCeEEEc-CCC----eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccc
Q 018705          106 --------------------GVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY  160 (351)
Q Consensus       106 --------------------~L~v~d~~~gl~~~~-~~g----~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~  160 (351)
                                          +-.|.......+.++ +..    ++.......-+|.+.++|||+...+.+-         
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF---------  387 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF---------  387 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec---------
Confidence                                223333333333333 311    2223233367999999999976665543         


Q ss_pred             cccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCc
Q 018705          161 KDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDN  236 (351)
Q Consensus       161 ~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~  236 (351)
                              +..|-.|+..+|+.-.... ......-|+++.|.+ |.|+.+..   +.|-..     .+.+..++||..|.
T Consensus       388 --------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~-----tkKl~~DLpGh~DE  453 (480)
T KOG0271|consen  388 --------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR-----TKKLKQDLPGHADE  453 (480)
T ss_pred             --------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEee-----eeeecccCCCCCce
Confidence                    3468888888887533222 334566799999987 66755443   455221     12233368888887


Q ss_pred             eE---ECCCCCEEEEEec
Q 018705          237 IN---LAPDGSFWIGLIK  251 (351)
Q Consensus       237 i~---~d~~G~lwva~~~  251 (351)
                      +.   ..+||..-++...
T Consensus       454 Vf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  454 VFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             EEEEEecCCCceeecCCC
Confidence            63   4588877666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.61  E-value=0.051  Score=49.35  Aligned_cols=228  Identities=18%  Similarity=0.204  Sum_probs=125.2

Q ss_pred             EEEEEEcCCCeEEEE-eecCCccccc-eEEcCCCCE-EEEeC----CCCeEEEc-CC-C---eEEecCCCCCcccEEEcc
Q 018705           74 WVKYFILHNETLVNW-KHIDSQSLLG-LTTTKDGGV-ILCDN----EKGLLKVT-EE-G---VEAIVPDASFTNDVIAAS  141 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~-~~~~~~p~~g-l~~d~~G~L-~v~d~----~~gl~~~~-~~-g---~~~l~~~~~~~n~l~~d~  141 (351)
                      ..+.+|+.+|+.... ....++-..| -+|++||++ |.+.+    +.|++-+. .. +   +..+...--.|-++.+.+
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence            466778877765433 2333333113 467899965 55432    24555555 33 4   233444336799999999


Q ss_pred             CC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cC--ccccceEEEcCCCCEEEEEecce----
Q 018705          142 DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EG--FYFANGIALSKNEDFVVVCESWK----  211 (351)
Q Consensus       142 dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~--~~~~ngi~~~~dg~~lyv~~~~~----  211 (351)
                      || +|.|++.+-......-...+.-.+-...|.++|..+|++....   ..  .....-++++++|. ++++.-..    
T Consensus       109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~  187 (305)
T PF07433_consen  109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPG  187 (305)
T ss_pred             CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCC
Confidence            99 8999886411110000011111122346888988888764321   11  12455789999997 77765333    


Q ss_pred             ----eEEeecCCCCceeEEe------ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhccc
Q 018705          212 ----RYWLKGDRAGILDAFI------ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  281 (351)
Q Consensus       212 ----~~~i~~~~~~~~~~~~------~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
                          .+.+... .+..+.+.      ..+.+|.-.|+++++|.++..+...                             
T Consensus       188 ~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-----------------------------  237 (305)
T PF07433_consen  188 DAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-----------------------------  237 (305)
T ss_pred             ccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-----------------------------
Confidence                1111111 01112111      0244566678999999866654421                             


Q ss_pred             CCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          282 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       282 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                            -+.+..+|.++|+.+....-++      .+.+...++. |+.+...+.+.+.......
T Consensus       238 ------Gg~~~~~d~~tg~~~~~~~l~D------~cGva~~~~~-f~~ssG~G~~~~~~~~~~~  288 (305)
T PF07433_consen  238 ------GGRVAVWDAATGRLLGSVPLPD------ACGVAPTDDG-FLVSSGQGQLIRLSPDGPQ  288 (305)
T ss_pred             ------CCEEEEEECCCCCEeeccccCc------eeeeeecCCc-eEEeCCCccEEEccCcccc
Confidence                  2467888777899887665444      4556554444 4445556667666644443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.57  E-value=0.05  Score=48.89  Aligned_cols=169  Identities=15%  Similarity=0.108  Sum_probs=97.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCC---CEEEEeCCCCeEEEcCCC-eEE---
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDG---GVILCDNEKGLLKVTEEG-VEA---  126 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G---~L~v~d~~~gl~~~~~~g-~~~---  126 (351)
                      .++|++  +..+-.|..|-.|..||....+ ........+..+ .+.|++.-   .|.-+. ..|.+.++..| .+.   
T Consensus        47 tavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~~s  122 (362)
T KOG0294|consen   47 TALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELLKS  122 (362)
T ss_pred             eEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEeee
Confidence            366764  4445556778899999974432 223344456666 78887543   565554 44666666544 333   


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      +......+++|++.|.|.|-++...                 ++.+..||.-+|+...+..--..+.-|.++|.|...++
T Consensus       123 lK~H~~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             ecccccccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            3222356999999999999888765                 23455555555544333332234555889999986666


Q ss_pred             Eecce--eEEeecCCCCceeEEec-cCCCCCCceEECCCCCEEEEE
Q 018705          207 CESWK--RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       207 ~~~~~--~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~  249 (351)
                      .-.+.  .|.+.+.     .+|.. ..+-.+-.+.++..+.|.+|.
T Consensus       186 ~~~~~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~~~L~vG~  226 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNA-----SVFREIENPKRILCATFLDGSELLVGG  226 (362)
T ss_pred             EeccEEEEEecccH-----hHhhhhhccccceeeeecCCceEEEec
Confidence            65444  3333321     11111 111123455666667777774

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.53  E-value=0.0066  Score=60.73  Aligned_cols=147  Identities=14%  Similarity=0.187  Sum_probs=97.3

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC---
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG---  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g---  123 (351)
                      ....+++++.-++-.++|...|.|-+++.+.|..+ .|.   ...+... |++.|.-+++.|+....|++.++. .+   
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcce
Confidence            34567888877778899999999999999888543 231   1223345 999999999999988889988873 22   


Q ss_pred             eEEecC---------------------C--------------------CCCcccEEEccCCcEEEEeCCCccCCcccccc
Q 018705          124 VEAIVP---------------------D--------------------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKD  162 (351)
Q Consensus       124 ~~~l~~---------------------~--------------------~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~  162 (351)
                      +..+..                     .                    .+.++++++++||+=.++.+.           
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-----------  596 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-----------  596 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-----------
Confidence            111100                     0                    067888888888875555443           


Q ss_pred             cccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEee
Q 018705          163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLK  216 (351)
Q Consensus       163 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~  216 (351)
                            ++.|..||..++...-...--.-+-.+.++|+|++|-.+..+.   .+|.+
T Consensus       597 ------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  597 ------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence                  4578888876665422111112344688999999777666554   55644

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.51  E-value=0.006  Score=57.46  Aligned_cols=133  Identities=13%  Similarity=0.112  Sum_probs=91.4

Q ss_pred             eEEEEEcCC-EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc-CCC-eEEecCC-CCCcccEEE
Q 018705           65 ALYTATRDG-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPD-ASFTNDVIA  139 (351)
Q Consensus        65 ~lyv~~~~g-~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~-~~g-~~~l~~~-~~~~n~l~~  139 (351)
                      .+.+|+.+| .+..+|..+++++++...-++.. .+.++++|. +.+++....++.++ .+| ++.+-.. ...+.++++
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~  451 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW  451 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence            455677777 78888988888888888778888 899999997 66777666788888 477 6655333 367888889


Q ss_pred             ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      +++++.+ +-.-   -         ++--...+-.||..++++-.+...-.+-..-+|+||++.||+-+...
T Consensus       452 ~~nsr~i-AYaf---P---------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs  510 (668)
T COG4946         452 HPNSRWI-AYAF---P---------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS  510 (668)
T ss_pred             cCCceeE-EEec---C---------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence            9988643 2210   0         00012357788888777655554444444458999999999965443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.51  E-value=0.055  Score=50.57  Aligned_cols=187  Identities=14%  Similarity=0.165  Sum_probs=106.4

Q ss_pred             cccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705           95 SLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        95 p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      |.+++...+.|..++.....+.+.+.  .+|  .....+.  .....+.++.|||.|+.+-..                 
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-----------------  367 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-----------------  367 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-----------------
Confidence            33388888999887777777777776  366  3333332  134667889999988876544                 


Q ss_pred             CceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705          169 YGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       169 ~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      +|.|-.||.+.+.. ..+...-.-...|+|+.+|-+|.++..+.  ++|=- .+......+.....--...+.+|..|.+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL-RKl~n~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL-RKLKNFKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe-hhhcccceeeccccccceeEEEcCCCCe
Confidence            56677777765432 11111112234688999986665544444  45511 1222333332111001345789999986


Q ss_pred             EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC--eEEEEEECCCCCcccceeEEEEEC
Q 018705          246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG--KIIRDFNDPDATYISFVTSAAEFD  323 (351)
Q Consensus       246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~g~~~~~~~~~~~~~  323 (351)
                      .+..+.                                    .-.|+.++..+.  +.+..+++..|    ..+.+-+.+
T Consensus       447 L~~~g~------------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~  486 (506)
T KOG0289|consen  447 LGIAGS------------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE  486 (506)
T ss_pred             EEeecc------------------------------------eeEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence            665432                                    125777765222  34555555444    244555666


Q ss_pred             CEEEEEecCCCeEEEE
Q 018705          324 GNLYLASLQSNFIGIL  339 (351)
Q Consensus       324 g~L~ig~~~~~~i~~~  339 (351)
                      ..-|+++...+++.++
T Consensus       487 ~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  487 HAQYLASTSMDAILRL  502 (506)
T ss_pred             cceEEeeccchhheEE
Confidence            6777777777777554

>PRK13684 Ycf48-like protein; Provisional

Probab=97.50  E-value=0.085  Score=49.23  Aligned_cols=185  Identities=13%  Similarity=0.115  Sum_probs=90.5

Q ss_pred             ccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCc
Q 018705           94 QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (351)
Q Consensus        94 ~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g  170 (351)
                      .++ .+....++.+|++.....+++-...|  .+.+... ....+++.++++|.+++...                  .|
T Consensus       133 ~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~------------------~G  193 (334)
T PRK13684        133 SPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS------------------RG  193 (334)
T ss_pred             Cce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC------------------Cc
Confidence            445 44443445566665544455544444  3433332 24567778888775554433                  24


Q ss_pred             eEEEE-eCCCCeEEEeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCc-eeEEeccCCC-----CCCceEECCC
Q 018705          171 QLRKY-DPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGI-LDAFIENLPG-----GPDNINLAPD  242 (351)
Q Consensus       171 ~l~~~-d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~-~~~~~~~~~g-----~pd~i~~d~~  242 (351)
                      .+++- +......+.+.. .....+++++.+++. +|+....+.+.+.....|. .+...  .|.     ....+.+.++
T Consensus       194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~G~~~~~s~d~G~sW~~~~--~~~~~~~~~l~~v~~~~~  270 (334)
T PRK13684        194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARGGQIRFNDPDDLESWSKPI--IPEITNGYGYLDLAYRTP  270 (334)
T ss_pred             eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecCCEEEEccCCCCCcccccc--CCccccccceeeEEEcCC
Confidence            55554 222223433322 224567888888887 5554434433221111122 12111  110     1134566778


Q ss_pred             CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-E
Q 018705          243 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-E  321 (351)
Q Consensus       243 G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~  321 (351)
                      +++|++...                                     +.+++=.. .|+.-.....+.+.. .....+. .
T Consensus       271 ~~~~~~G~~-------------------------------------G~v~~S~d-~G~tW~~~~~~~~~~-~~~~~~~~~  311 (334)
T PRK13684        271 GEIWAGGGN-------------------------------------GTLLVSKD-GGKTWEKDPVGEEVP-SNFYKIVFL  311 (334)
T ss_pred             CCEEEEcCC-------------------------------------CeEEEeCC-CCCCCeECCcCCCCC-cceEEEEEe
Confidence            889987432                                     33443333 455444433223322 2344444 4


Q ss_pred             ECCEEEEEecCCCeEEEEe
Q 018705          322 FDGNLYLASLQSNFIGILP  340 (351)
Q Consensus       322 ~~g~L~ig~~~~~~i~~~~  340 (351)
                      ++++.|+... .+-|.+++
T Consensus       312 ~~~~~~~~G~-~G~il~~~  329 (334)
T PRK13684        312 DPEKGFVLGQ-RGVLLRYV  329 (334)
T ss_pred             CCCceEEECC-CceEEEec
Confidence            5678888765 56676665

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.48  E-value=0.071  Score=50.83  Aligned_cols=169  Identities=12%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCCe-----EEec
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGV-----EAIV  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g~-----~~l~  128 (351)
                      -+++|. .+|.+.++..+|.|..|++.+.+...-. ...+-.. +|..-++|.|.-+. ..+.+..+.+..     ..++
T Consensus       250 l~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGg-KDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  250 LCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGG-KDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             EEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecC-ccceEEeccccccccccccCc
Confidence            478888 6788889999999999998555543222 2234455 78888999888633 333333332221     1123


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      +....+.-|+....+ ||+.++.                  +.|.+=+..++....+......--|++.+|+.+ +|++.
T Consensus       327 e~~G~iRtv~e~~~d-i~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~  386 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGD-ILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTC  386 (626)
T ss_pred             hhcCCeeEEecCCCc-EEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeec
Confidence            333566666654433 8888764                  123222222222222222233456888998887 55644


Q ss_pred             c-ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          209 S-WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       209 ~-~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      . .+  ++|-+ .+. ......+. |  .....+++.|.+-+++..
T Consensus       387 gqdk~v~lW~~-~k~-~wt~~~~d-~--~~~~~fhpsg~va~Gt~~  427 (626)
T KOG2106|consen  387 GQDKHVRLWND-HKL-EWTKIIED-P--AECADFHPSGVVAVGTAT  427 (626)
T ss_pred             cCcceEEEccC-Cce-eEEEEecC-c--eeEeeccCcceEEEeecc
Confidence            3 33  77742 211 12222211 1  234567788866666544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.48  E-value=0.0032  Score=57.70  Aligned_cols=184  Identities=17%  Similarity=0.189  Sum_probs=100.9

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCCCcccEEE
Q 018705           64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDASFTNDVIA  139 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~~~n~l~~  139 (351)
                      +++-.++.||.|..||...++..........|.+.+....+|-+|-+. ..+.+++++  +|  .+.+......+|.|+.
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS-~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS-QDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC-CCceEEEEEccchhHHHhhcccchheeeeec
Confidence            445556679999999985554433222222343377777788777665 446677763  67  6666665577888877


Q ss_pred             ccCCcEEEE---eCCCc--------------cCC--cccccccccccCCceEEEEeCCCCe--EEEeecCccccceEEEc
Q 018705          140 ASDGTLYFT---VASTK--------------YTP--TDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALS  198 (351)
Q Consensus       140 d~dG~ly~t---~~~~~--------------~~~--~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~ngi~~~  198 (351)
                      +.|=-+=..   ....+              |+.  ......+..+..+..++.|+|...+  ++.........|.+.||
T Consensus       297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS  376 (480)
T ss_pred             cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence            643111000   00000              000  0001224445566789999886321  12233344568899999


Q ss_pred             CCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          199 KNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ||++++--++.++  ++|-.  ..|+. ..|. +.-+...-++..+|.+|.|+...
T Consensus       377 Pd~r~IASaSFDkSVkLW~g--~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDG--RTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSK  429 (480)
T ss_pred             CCccEEEEeecccceeeeeC--CCcchhhhhh-hccceeEEEEeccCccEEEEcCC
Confidence            9996443455555  77733  23332 1121 11112234678889999998764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.47  E-value=0.035  Score=49.99  Aligned_cols=217  Identities=14%  Similarity=0.179  Sum_probs=118.9

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEcC-C-----C-eE----EecC--C---CCCcccEEEccCCcEEEEeCCCccCC
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-----G-VE----AIVP--D---ASFTNDVIAASDGTLYFTVASTKYTP  156 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-----g-~~----~l~~--~---~~~~n~l~~d~dG~ly~t~~~~~~~~  156 (351)
                      .+|. ||++.+.|-+||++.+.+...+.. +     | ..    .+..  .   ...|.++++.....+-++... +-..
T Consensus        23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~  100 (336)
T TIGR03118        23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP  100 (336)
T ss_pred             cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence            4678 999999999999998877554432 2     3 11    1111  1   145667766644333333321 0000


Q ss_pred             cccccccccccCCceEEEEeCCCCeE------EEeecC--ccccceEEEcCC--CCEEEEEecce-eEEeecCCCCcee-
Q 018705          157 TDFYKDMAEGKPYGQLRKYDPKLKET------TVLHEG--FYFANGIALSKN--EDFVVVCESWK-RYWLKGDRAGILD-  224 (351)
Q Consensus       157 ~~~~~~~~~~~~~g~l~~~d~~~~~~------~~~~~~--~~~~ngi~~~~d--g~~lyv~~~~~-~~~i~~~~~~~~~-  224 (351)
                          -..+..+.+|.|.-|.|.-+..      .++...  ...=.|+|+...  +++||.++..+ ++.+-+....... 
T Consensus       101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118       101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence                0011223356677776543222      111111  111136676643  56899999877 7877653332211 


Q ss_pred             --EEecc-CCC--CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC
Q 018705          225 --AFIEN-LPG--GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG  299 (351)
Q Consensus       225 --~~~~~-~~g--~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g  299 (351)
                        -|.+. +|.  -|-||.- -.|+|||+-........+                       .+.+...+-|-+||+ +|
T Consensus       177 ~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d-----------------------~v~G~G~G~VdvFd~-~G  231 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRND-----------------------EVAGAGLGYVNVFTL-NG  231 (336)
T ss_pred             CCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccc-----------------------cccCCCcceEEEEcC-CC
Confidence              13331 221  3556643 357899986542111000                       012345578999999 99


Q ss_pred             eEEEEEECCCCCcccceeEEEE-------ECCEEEEEecCCCeEEEEeCC
Q 018705          300 KIIRDFNDPDATYISFVTSAAE-------FDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~-------~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      +.++++.+..  .++..=.+..       ..|.|.||.+...+|-.||..
T Consensus       232 ~l~~r~as~g--~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       232 QLLRRVASSG--RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             cEEEEeccCC--cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence            9999986422  1222223321       258999999999999999965

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.031  Score=52.33  Aligned_cols=152  Identities=16%  Similarity=0.241  Sum_probs=78.0

Q ss_pred             eEEEEEcC--CEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEec-CCCCCc-c-
Q 018705           65 ALYTATRD--GWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIV-PDASFT-N-  135 (351)
Q Consensus        65 ~lyv~~~~--g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l~-~~~~~~-n-  135 (351)
                      .||.+..+  .+++.+|.++++.+......+ ... |..+.++++ +|.......+++++- +. .+.+. ....+. + 
T Consensus        50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~g  128 (386)
T PF14583_consen   50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYG  128 (386)
T ss_dssp             EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEE
T ss_pred             EEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccc
Confidence            45666554  469999999998887765433 334 666666664 444444567999984 44 33332 111111 1 


Q ss_pred             cEEEccCCcEEEEeCCCc--cCC---cccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC-EEEEEec
Q 018705          136 DVIAASDGTLYFTVASTK--YTP---TDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCES  209 (351)
Q Consensus       136 ~l~~d~dG~ly~t~~~~~--~~~---~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~-~lyv~~~  209 (351)
                      ...++.|++.++.....+  +..   .....+.++..+..+|+.+|.++|+.+.+...-..-+-+.++|... .|-+|..
T Consensus       129 t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE  208 (386)
T PF14583_consen  129 TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE  208 (386)
T ss_dssp             EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred             ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence            223456777665543111  110   1122356677778899999999999988876655566777887443 4445554


Q ss_pred             ce------eEEeec
Q 018705          210 WK------RYWLKG  217 (351)
Q Consensus       210 ~~------~~~i~~  217 (351)
                      +.      |+|+-+
T Consensus       209 Gpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  209 GPWDLVDQRIWTIN  222 (386)
T ss_dssp             S-TTTSS-SEEEEE
T ss_pred             CCcceeceEEEEEE
Confidence            43      899864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.42  E-value=0.022  Score=49.58  Aligned_cols=165  Identities=16%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             EEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC----eEEecCCCCCcccEEEcc
Q 018705           68 TATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIAAS  141 (351)
Q Consensus        68 v~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g----~~~l~~~~~~~n~l~~d~  141 (351)
                      .+..|-.|..|...+|+ .+++....+..+ .|.+.++++..++...+.+..++ ..+    +..+......+..+.+-.
T Consensus        15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             eccCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence            34567788888877875 355666667778 89999999888777777776666 222    333333225667777878


Q ss_pred             CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCC
Q 018705          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDR  219 (351)
Q Consensus       142 dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~  219 (351)
                      ||+-.+|.+.                 +|.+-.||...-...+....-.-.|.|.++|+...|++++-++  ++|=-...
T Consensus        94 dgrWMyTgse-----------------Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   94 DGRWMYTGSE-----------------DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             cCeEEEecCC-----------------CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            8875555443                 5677777766433333333334568999999988898888766  55522111


Q ss_pred             CCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          220 AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       220 ~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .-..++..+.. -....+.+++||...+|...
T Consensus       157 ~c~~~liPe~~-~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  157 SCTHELIPEDD-TSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             ccccccCCCCC-cceeeEEEcCCCcEEEEecC
Confidence            11112222111 11234567777776666544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.42  E-value=0.0083  Score=56.49  Aligned_cols=180  Identities=13%  Similarity=0.165  Sum_probs=110.7

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCC-CCeEEEc-CCC--eEE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE-KGLLKVT-EEG--VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~-~gl~~~~-~~g--~~~  126 (351)
                      ..-.++.++..+..+..+..|+.|-.||..+|+...-......|. .+.+.+++ +++++... ..|+..| +.|  ++.
T Consensus       259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe  337 (503)
T KOG0282|consen  259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE  337 (503)
T ss_pred             hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence            344577888666678888889999999999998755445556677 89999888 77766544 4566666 466  444


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeec-CccccceEEEcCCCCEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHE-GFYFANGIALSKNEDFV  204 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~-~~~~~ngi~~~~dg~~l  204 (351)
                      +...+..+++|.+-++|+-+++.+.                 .+.+..|+-...- +..... ....--.|+++|+++ .
T Consensus       338 Yd~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~  399 (503)
T KOG0282|consen  338 YDRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-W  399 (503)
T ss_pred             HHhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-e
Confidence            4444578999999999987877764                 2234444322111 111111 112223578899988 4


Q ss_pred             EEEec-ceeEEeec--C--CCCceeEEec-cCCCCCCceEECCCCCEEEEEe
Q 018705          205 VVCES-WKRYWLKG--D--RAGILDAFIE-NLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       205 yv~~~-~~~~~i~~--~--~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +.+++ ++++.+..  +  +....+.|.. ..+|++-.+.+++||++.++..
T Consensus       400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence            44444 33333321  1  1112223322 2467888889999998777643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.38  E-value=0.01  Score=58.70  Aligned_cols=83  Identities=12%  Similarity=0.057  Sum_probs=54.0

Q ss_pred             ceEEEEeCCC-----CeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecC------CCCce-eEEec-cCCC
Q 018705          170 GQLRKYDPKL-----KETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGD------RAGIL-DAFIE-NLPG  232 (351)
Q Consensus       170 g~l~~~d~~~-----~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~------~~~~~-~~~~~-~~~g  232 (351)
                      ++|-.+|..+     .++........+|.|+++||||+++|++.-..    .|.+...      +..-. .+..+ .+.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4688999876     34555556678999999999999999987544    3443321      11000 11111 1222


Q ss_pred             CCCceEECCCCCEEEEEecC
Q 018705          233 GPDNINLAPDGSFWIGLIKM  252 (351)
Q Consensus       233 ~pd~i~~d~~G~lwva~~~~  252 (351)
                      .|-..++|.+|+.|++.+..
T Consensus       376 GPLHTaFDg~G~aytslf~d  395 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLD  395 (635)
T ss_pred             CcceEEECCCCCEEEeEeec
Confidence            47778999999999998753

>PTZ00420 coronin; Provisional

Probab=97.38  E-value=0.19  Score=50.23  Aligned_cols=101  Identities=8%  Similarity=-0.053  Sum_probs=63.2

Q ss_pred             CccccceEEcCC-CCEEEEeCCCCeEEEcC--CC-e--E-------EecCCCCCcccEEEccCCc-EEEEeCCCccCCcc
Q 018705           93 SQSLLGLTTTKD-GGVILCDNEKGLLKVTE--EG-V--E-------AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTD  158 (351)
Q Consensus        93 ~~p~~gl~~d~~-G~L~v~d~~~gl~~~~~--~g-~--~-------~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~  158 (351)
                      .... .+++.++ ++++++....+.++++.  ++ .  .       .+......++++++.|++. +.++.+.       
T Consensus        75 ~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~-------  146 (568)
T PTZ00420         75 SSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF-------  146 (568)
T ss_pred             CCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-------
Confidence            4456 8999986 67777666667777762  32 1  1       1222225688899999885 4445433       


Q ss_pred             cccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          159 FYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       159 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                                ++.|..||..+++.............++++++|+.|..+..++
T Consensus       147 ----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~  189 (568)
T PTZ00420        147 ----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK  189 (568)
T ss_pred             ----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC
Confidence                      4678889987766433222223467899999999554444444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.16  Score=49.22  Aligned_cols=157  Identities=11%  Similarity=-0.017  Sum_probs=79.5

Q ss_pred             CEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E---EEEeCC--CCeEEEcC-CC-eEEecCCCCCcccEEEccCC-
Q 018705           73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V---ILCDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-  143 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L---~v~d~~--~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG-  143 (351)
                      .+|+.+|.+++..+.+........ .-++.+||+ +   |+....  ..++.++. .| .+.+..........+++||| 
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            468888875555555543322223 567888884 2   344432  25777774 45 55554322333456899999 


Q ss_pred             cEEEEeCCCccCCcccccccccccCCceEEE--EeCCC---CeEEEeecC-ccccceEEEcCCCCEEEEEec-ce--eEE
Q 018705          144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRK--YDPKL---KETTVLHEG-FYFANGIALSKNEDFVVVCES-WK--RYW  214 (351)
Q Consensus       144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~~---~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~-~~--~~~  214 (351)
                      .|.++....  +             ...++.  |+.++   ++.+.+... .......+++|||+.|++... .+  +++
T Consensus       244 ~Laf~s~~~--g-------------~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        244 LLAFISDRY--G-------------NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             EEEEEECCC--C-------------CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            565554320  0             012333  44432   333444332 222345689999997776543 33  455


Q ss_pred             eecC--CCCceeEEeccCCCCCCceEECCCCCEE
Q 018705          215 LKGD--RAGILDAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       215 i~~~--~~~~~~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      +-+.  ..+..+.+.. ..+......+++||+..
T Consensus       309 ~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        309 IMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             EEECcccccceEEecc-CCCCccceeECCCCCEE
Confidence            4321  1122232321 11223456788999733

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.37  E-value=0.0097  Score=59.04  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=108.5

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~  130 (351)
                      +..+.|+...|...+.|+.+..|...+-.- ..+. ....|.-.+.|.|.|-.|++.+..+.-+++.   .. .++++..
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            566776666666677788777777644432 2332 3333442567778886666665666666663   23 6666766


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      .+....+.+.|+.+..+|.++                 +-.+..||-.+|...++..+ -.....+++||+|++|--++.
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e  597 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE  597 (707)
T ss_pred             ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence            677888899999866666554                 22466666665554443333 334457899999986665555


Q ss_pred             ce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCc
Q 018705          210 WK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ  254 (351)
Q Consensus       210 ~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~  254 (351)
                      .+  .+|--.  .++ +..+..+ .+..+-+.++.+|++.+..+..++
T Consensus       598 d~~I~iWDl~--~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  598 DGLIKIWDLA--NGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             CCcEEEEEcC--CCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCe
Confidence            55  566221  111 1222222 344566789999999998876544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=97.37  E-value=0.0043  Score=57.23  Aligned_cols=176  Identities=13%  Similarity=0.222  Sum_probs=106.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C-eEEecC-C
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G-VEAIVP-D  130 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g-~~~l~~-~  130 (351)
                      ..+.|.|++.+|.+|+..|.+-.|+...=.++.+......|..++....+|.-.|+....|.++|+. . . ++.+.. .
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh  179 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH  179 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence            4678888888999999999887776421111222111233444888889998777776789999984 2 2 333322 2


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ...+.+++++|+...|+|.+.                 +|.|-.||-.-. +-+++.....-+..+.++|....+..+.-
T Consensus       180 ~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk  242 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK  242 (464)
T ss_pred             hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC
Confidence            257899999999888988875                 567777764322 22333333445778899998774444443


Q ss_pred             ce--eEEeecCCCCceeEEec--cCCCCCCceEECCCCCEEEEEec
Q 018705          210 WK--RYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++  ++|  +++.++.  +..  ......-++.+.++|++.++...
T Consensus       243 DnlVKlW--DprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  243 DNLVKLW--DPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             CceeEee--cCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccC
Confidence            44  555  4444432  111  11112345678888876666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.33  E-value=0.028  Score=51.02  Aligned_cols=176  Identities=16%  Similarity=0.195  Sum_probs=99.6

Q ss_pred             EEeeCCCeEEEE-----EcCCEEEEEEcCCC--eEEEEeecCCccccceEEcCCC-CEEEEeCC----------------
Q 018705           58 SVVVSKGALYTA-----TRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDG-GVILCDNE----------------  113 (351)
Q Consensus        58 ~~d~~~g~lyv~-----~~~g~I~~~d~~~g--~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~----------------  113 (351)
                      +|++++..||+.     ...|.|-.+|...+  ++..|...+-.|+ -+.+.+|| .|.|++.+                
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            566577888884     34688999998633  3345555556799 99999999 78888643                


Q ss_pred             --CCeEEEc-CCC--eEE--ecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          114 --KGLLKVT-EEG--VEA--IVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       114 --~gl~~~~-~~g--~~~--l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                        ..|..++ .+|  +++  +...  ...+..++++++|.+|+....   .-...       ...--|..++.. +..+.
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~~-------~~~PLva~~~~g-~~~~~  204 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDPG-------DAPPLVALHRRG-GALRL  204 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCCC-------ccCCeEEEEcCC-Cccee
Confidence              1345554 355  333  2222  267889999999999998742   11000       001124444443 22332


Q ss_pred             eec------Cc-cccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCC--ceEECCCCCEEEEEe
Q 018705          185 LHE------GF-YFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPD--NINLAPDGSFWIGLI  250 (351)
Q Consensus       185 ~~~------~~-~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd--~i~~d~~G~lwva~~  250 (351)
                      +.-      .+ .+.-.|++++++..+.+++-.+ ++.+-+...++.....    ..+|  |++...+| +.++.+
T Consensus       205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~----~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV----PLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc----ccCceeeeeecCCc-eEEeCC
Confidence            221      11 3455699999998666666544 4443333334432211    1344  45666666 555543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.023  Score=48.24  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             CceEEEEeCCCCeEEEeecC-------------ccccceEEEcCCCCEEEEEe
Q 018705          169 YGQLRKYDPKLKETTVLHEG-------------FYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~-------------~~~~ngi~~~~dg~~lyv~~  208 (351)
                      +.++.+++|++|++..+.+-             ...+||||.+++++++|++-
T Consensus       195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            35788999999998766421             23589999999998888874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.31  E-value=0.038  Score=50.48  Aligned_cols=104  Identities=14%  Similarity=0.009  Sum_probs=66.1

Q ss_pred             cCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCCeEEEc--C-C
Q 018705           47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-E  122 (351)
Q Consensus        47 ~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~-~  122 (351)
                      ..|.+..-.++++||.+..+-+|..|+.|-.||..+|++..-.. .-.... ++++.+..-..++-...+.++-+  . +
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhh
Confidence            34556677899999765555567889999999999998754321 223344 88887665333333334445444  2 2


Q ss_pred             C-eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705          123 G-VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       123 g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      . ++.+......+.++++-|.-.+.+|.+.
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~gr  255 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGR  255 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCC
Confidence            3 5555555577888888876667777654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.30  E-value=0.1  Score=45.90  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             ceEecC--CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCC-----C
Q 018705           43 LTKLGE--GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-----G  115 (351)
Q Consensus        43 ~~~i~~--~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-----g  115 (351)
                      -|++++  |.-..-.++.+|.+...+.+|.+|..+..||..+|+.......+...- .+-|+..|++.++....     +
T Consensus        42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~  120 (327)
T KOG0643|consen   42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTC  120 (327)
T ss_pred             CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcce
Confidence            455554  333334577888777888999999999999998997643333333334 78888999876654321     2


Q ss_pred             ---eEEEcC-C----C---eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          116 ---LLKVTE-E----G---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       116 ---l~~~~~-~----g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                         ++.+.. .    +   ...+......++....++-|...|+.-                 .+|.|-+||..+|+..+
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELV  183 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceee
Confidence               222221 1    1   122222235566666666665555432                 36889999998875433


Q ss_pred             eec--CccccceEEEcCCCCEEEEEecc
Q 018705          185 LHE--GFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       185 ~~~--~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      -..  .-...|-|.+++|.. .+++.+.
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T-~FiT~s~  210 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRT-YFITGSK  210 (327)
T ss_pred             echhhhccccccccccCCcc-eEEeccc
Confidence            221  224577899999986 6665443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.29  E-value=0.14  Score=46.93  Aligned_cols=176  Identities=15%  Similarity=0.083  Sum_probs=77.9

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCc-----cccceEEcCCCCEEEEeCCCCeEEEc-CCC-
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQ-----SLLGLTTTKDGGVILCDNEKGLLKVT-EEG-  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~-----p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-  123 (351)
                      ....+|+|. +.+.-|+....|.|++=+- .| .++........     -+ .+.++. .+.|++... +++... ..| 
T Consensus        17 ~~l~dV~F~-d~~~G~~VG~~g~il~T~D-GG~tW~~~~~~~~~~~~~~l~-~I~f~~-~~g~ivG~~-g~ll~T~DgG~   91 (302)
T PF14870_consen   17 KPLLDVAFV-DPNHGWAVGAYGTILKTTD-GGKTWQPVSLDLDNPFDYHLN-SISFDG-NEGWIVGEP-GLLLHTTDGGK   91 (302)
T ss_dssp             S-EEEEEES-SSS-EEEEETTTEEEEESS-TTSS-EE-----S-----EEE-EEEEET-TEEEEEEET-TEEEEESSTTS
T ss_pred             CceEEEEEe-cCCEEEEEecCCEEEEECC-CCccccccccCCCccceeeEE-EEEecC-CceEEEcCC-ceEEEecCCCC
Confidence            456688888 6666666556676766532 34 34443221111     23 566653 457776544 454444 344 


Q ss_pred             -eEEec--CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEc
Q 018705          124 -VEAIV--PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALS  198 (351)
Q Consensus       124 -~~~l~--~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~  198 (351)
                       -+.+.  ... ..+..+..-.++..++...                  .|.||+-.-.....+.+.. .....+.+..+
T Consensus        92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   92 TWERVPLSSKLPGSPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             S-EE----TT-SS-EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred             CcEEeecCCCCCCCeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence             44432  121 3445555545555554432                  2456665443344444332 23345567778


Q ss_pred             CCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          199 KNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       199 ~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +||+++.++..++.|...++.....+.+.......-.+|.++++|+||+...
T Consensus       154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~  205 (302)
T PF14870_consen  154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR  205 (302)
T ss_dssp             TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET
T ss_pred             CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC
Confidence            8988666665554343322211112222211122345678899999999863

>PRK13684 Ycf48-like protein; Provisional

Probab=97.29  E-value=0.15  Score=47.50  Aligned_cols=176  Identities=13%  Similarity=0.067  Sum_probs=82.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeec----CCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHI----DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~----~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~  125 (351)
                      ...+|+|. +.+..|+....|.|++=.- .| .++.....    ..... .++++. ++.|++.....+++-...|  .+
T Consensus        47 ~l~~v~F~-d~~~g~avG~~G~il~T~D-gG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~  122 (334)
T PRK13684         47 NLLDIAFT-DPNHGWLVGSNRTLLETND-GGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQPSLLLHTTDGGKNWT  122 (334)
T ss_pred             ceEEEEEe-CCCcEEEEECCCEEEEEcC-CCCCceECccCCccccccee-eeEEcC-CcEEEeCCCceEEEECCCCCCCe
Confidence            45578887 5555555445677777543 34 34443211    11234 677763 4577776554455543334  44


Q ss_pred             EecCC--C-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCC
Q 018705          126 AIVPD--A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~~--~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg  201 (351)
                      .+...  . ..+..+....++.+|+...                  .|.|++=+-.....+.+... ....+++.+++++
T Consensus       123 ~~~~~~~~~~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g  184 (334)
T PRK13684        123 RIPLSEKLPGSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDG  184 (334)
T ss_pred             EccCCcCCCCCceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCCC
Confidence            43221  1 2333333333334444332                  24566654333344443322 2235678888887


Q ss_pred             CEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          202 DFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       202 ~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ..+.+.+.+..+...+....+.+...........++.+.++|++|+...
T Consensus       185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence            5333333332332211111122222111111235567778888888743

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.29  E-value=0.11  Score=49.36  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             ccCCc-eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705          166 GKPYG-QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  244 (351)
Q Consensus       166 ~~~~g-~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~  244 (351)
                      +..+| .|..||..+++++....++.....+.+++||+.+.+++..-.+|+-+-..++.+..-....++.-++.+.++++
T Consensus       377 gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence            34445 68999999999999888888888999999999777776444666654444555543223334455566666664


Q ss_pred             EEEEEe
Q 018705          245 FWIGLI  250 (351)
Q Consensus       245 lwva~~  250 (351)
                       |+|-.
T Consensus       457 -~iAYa  461 (668)
T COG4946         457 -WIAYA  461 (668)
T ss_pred             -eEEEe
Confidence             66643

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.28  E-value=0.0026  Score=61.39  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--cccceEEEcCCCCEEEEE
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVC  207 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngi~~~~dg~~lyv~  207 (351)
                      +.|..|++|+.|+||+.+.+..-........      ...+..=++++++++.+..+-  ....|++|+||++++||+
T Consensus       500 ~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G------~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         500 NSPDNLAFDPWGRLWIQTDGSGSTLRNRFRG------VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             cCCCceEECCCCCEEEEecCCCCccCccccc------ccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence            6799999999999999876421111100000      011222356677776655432  356689999999988886

>PTZ00420 coronin; Provisional

Probab=97.28  E-value=0.13  Score=51.27  Aligned_cols=113  Identities=9%  Similarity=0.018  Sum_probs=74.5

Q ss_pred             CCCceEEEeeC-CCeEEEEEcCCEEEEEEcCCCe--E-------EEEeecCCccccceEEcCCCCE-EEEeCCCCeEEEc
Q 018705           52 NHPEDVSVVVS-KGALYTATRDGWVKYFILHNET--L-------VNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKVT  120 (351)
Q Consensus        52 ~~pe~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~--~-------~~~~~~~~~p~~gl~~d~~G~L-~v~d~~~gl~~~~  120 (351)
                      ....+++|.|. +..|.++..||.|..||..++.  .       ..+........ .+++++++.. +++....+.++++
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence            34568899875 4677889999999999975432  1       11222234455 8999998864 4444455677776


Q ss_pred             C--CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          121 E--EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       121 ~--~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      .  ++  ...+... ..+.+++++++|.+.++...                 ++.|..||+.+++..
T Consensus       154 Dl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        154 DIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIA  202 (568)
T ss_pred             ECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEE
Confidence            3  44  3333222 46788999999988876543                 457999999877653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.26  E-value=0.11  Score=52.98  Aligned_cols=143  Identities=8%  Similarity=0.096  Sum_probs=81.3

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~~~l~  128 (351)
                      |-..|++|+++..+++...+|-|.+|+....  +.+.+...+.... +++.+.. .+..+...+.+.++. +.+ ...+.
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL   92 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYSN-HFLTGSEQNTVLRYKFPSGEEDTIL   92 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeeccc-ceEEeeccceEEEeeCCCCCcccee
Confidence            4568999988888888888998988875322  1222221222233 6665433 455555544455554 333 22121


Q ss_pred             CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEEE
Q 018705          129 PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVV  206 (351)
Q Consensus       129 ~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~lyv  206 (351)
                      ... .-.++++++.+|...+.-+.                 +-.|-..+......+....+...| -++.++|++++|-+
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV  155 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence            111 34788999999976555443                 113444443333333333443333 47889999998888


Q ss_pred             Eecce--eEE
Q 018705          207 CESWK--RYW  214 (351)
Q Consensus       207 ~~~~~--~~~  214 (351)
                      +..++  ++|
T Consensus       156 ss~dG~v~iw  165 (933)
T KOG1274|consen  156 SSCDGKVQIW  165 (933)
T ss_pred             EecCceEEEE
Confidence            87777  444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.24  E-value=0.066  Score=51.01  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=89.4

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC---eEEe
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VEAI  127 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g---~~~l  127 (351)
                      ...++-|+.. .+ -+|+|+..+.|++=..+++-............ |++..++.+++++-...+.++++.+.   ...+
T Consensus       329 ~G~iRtv~e~-~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~  405 (626)
T KOG2106|consen  329 FGPIRTVAEG-KG-DILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI  405 (626)
T ss_pred             cCCeeEEecC-CC-cEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEE
Confidence            4456677765 33 39999998888887765442222222223455 99999999999988777888888633   2222


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      ..  .-..++.++|.|.+-+...                  .|+.+.+|..+.++..+...-.--+.+.++|+|.++-++
T Consensus       406 ~~--d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  406 IE--DPAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             ec--CceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence            11  2355677888885544433                  477888887765554444443345678889999877777


Q ss_pred             ecce
Q 018705          208 ESWK  211 (351)
Q Consensus       208 ~~~~  211 (351)
                      +.++
T Consensus       466 s~d~  469 (626)
T KOG2106|consen  466 SHDN  469 (626)
T ss_pred             cCCC
Confidence            7666

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.21  E-value=0.012  Score=58.38  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEE----------------------------------------cCCEEEEEEcCC
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTAT----------------------------------------RDGWVKYFILHN   82 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~----------------------------------------~~g~I~~~d~~~   82 (351)
                      +..+..+  ..|..++++++++.+|+.+                                        .+++|..+|..+
T Consensus       228 ~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t  305 (635)
T PRK02888        228 AWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK  305 (635)
T ss_pred             EEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence            3444444  2688888888778888874                                        124466777655


Q ss_pred             -----CeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEE-EcCCC-eE----------EecCC--C-CCcccEEEcc
Q 018705           83 -----ETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLK-VTEEG-VE----------AIVPD--A-SFTNDVIAAS  141 (351)
Q Consensus        83 -----g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~-~~~~g-~~----------~l~~~--~-~~~n~l~~d~  141 (351)
                           .++..+...+.+|. |+.+++||+ +|++......+. ++-.. ..          .+...  . ..|-..++|+
T Consensus       306 ~~~~~~~v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg  384 (635)
T PRK02888        306 AANAGSALTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG  384 (635)
T ss_pred             cccCCcceEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC
Confidence                 24455556778899 999999996 566554443333 33111 11          11111  1 6788999999


Q ss_pred             CCcEEEEe
Q 018705          142 DGTLYFTV  149 (351)
Q Consensus       142 dG~ly~t~  149 (351)
                      +|+.|.|-
T Consensus       385 ~G~aytsl  392 (635)
T PRK02888        385 RGNAYTTL  392 (635)
T ss_pred             CCCEEEeE
Confidence            99988764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.19  E-value=0.0096  Score=55.21  Aligned_cols=148  Identities=10%  Similarity=0.091  Sum_probs=93.2

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCCEEEEeCCCCeEEEcC-CC---
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVTE-EG---  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g---  123 (351)
                      |.-.+--+++|.+++-.+-+|..|.-=..||..+|+-..+..... ..+ +++|+|+|-..++.+..+..+++. .+   
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            444456689999544444455555433456777887665543333 345 999999998888877778888874 33   


Q ss_pred             eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCC
Q 018705          124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg  201 (351)
                      ..+++...+-+.++.++| .|.+.+|.+.                 ++.+-.|...+.+. +.++..-...-++.+++|+
T Consensus       380 ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             ceecccccchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence            444444447888999998 4677777664                 34566666555433 2233333345567888998


Q ss_pred             CEEEEEecce--eEE
Q 018705          202 DFVVVCESWK--RYW  214 (351)
Q Consensus       202 ~~lyv~~~~~--~~~  214 (351)
                      +.+.-+..++  ++|
T Consensus       443 ~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  443 QAIATSSFDRTIKLW  457 (459)
T ss_pred             ceEEEeccCceeeec
Confidence            8554454444  565

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.16  E-value=0.29  Score=48.19  Aligned_cols=255  Identities=10%  Similarity=0.040  Sum_probs=121.7

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCc------cccceEEcCCCCEEEEeC---------CCCeEEEcC-CCeEE
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQ------SLLGLTTTKDGGVILCDN---------EKGLLKVTE-EGVEA  126 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~------p~~gl~~d~~G~L~v~d~---------~~gl~~~~~-~g~~~  126 (351)
                      ++.+|+++.+|.|+.+|.++|+..-.......      ...+..++ ++.+|++..         ...++.++. +|...
T Consensus       110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            38999999999999999988976322111111      11022332 366777642         235778885 66222


Q ss_pred             ecC----CC--C-----------------CcccEEEcc-CCcEEEEeCCCccCCccccccc--ccccCCceEEEEeCCCC
Q 018705          127 IVP----DA--S-----------------FTNDVIAAS-DGTLYFTVASTKYTPTDFYKDM--AEGKPYGQLRKYDPKLK  180 (351)
Q Consensus       127 l~~----~~--~-----------------~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~--~~~~~~g~l~~~d~~~~  180 (351)
                      +..    ..  .                 .-...++|+ +|.+|+........  .+....  ......+.|+-+|.++|
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~--~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPW--NWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCC--ccCCccCCCCCCceeeEEEEcCCCC
Confidence            211    10  0                 002346665 56889886432100  000000  01122457999999998


Q ss_pred             eEEEeecCc-------cccceEEEc----CCCC---EEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEE
Q 018705          181 ETTVLHEGF-------YFANGIALS----KNED---FVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW  246 (351)
Q Consensus       181 ~~~~~~~~~-------~~~ngi~~~----~dg~---~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lw  246 (351)
                      +..-.....       ..+....+.    -+|.   .+|++...+++..-+...|+..--. ...  -.++..++ +.+|
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~-~~~--~~~~~~~~-~~vy  342 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR-PEV--EQPMAYDP-GLVY  342 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe-Eee--ccccccCC-ceEE
Confidence            875433211       111111111    2332   4666655553322223334432111 111  12344454 7788


Q ss_pred             EEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC------cccceeEEE
Q 018705          247 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT------YISFVTSAA  320 (351)
Q Consensus       247 va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~------~~~~~~~~~  320 (351)
                      ++....... +   ....       ..+ .       .....+.+..+|.++|+++=........      .....+...
T Consensus       343 v~~~~~~~~-~---~~~~-------~~~-~-------~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~  403 (488)
T cd00216         343 LGAFHIPLG-L---PPQK-------KKR-C-------KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA  403 (488)
T ss_pred             Ecccccccc-C---cccc-------cCC-C-------CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence            875321000 0   0000       000 0       1134578999998789876544332100      001122344


Q ss_pred             EECCEEEEEecCCCeEEEEeCCCC
Q 018705          321 EFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       321 ~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ..++.||+++. .+.+..++..+=
T Consensus       404 ~~g~~v~~g~~-dG~l~ald~~tG  426 (488)
T cd00216         404 TAGNLVFAGAA-DGYFRAFDATTG  426 (488)
T ss_pred             ecCCeEEEECC-CCeEEEEECCCC
Confidence            56788999885 677887776543

The alignment model contains an 8-bladed beta-propeller.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.16  E-value=0.0079  Score=55.69  Aligned_cols=156  Identities=14%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-CccccceEEcCCCC-EEEEeCCCCeEEEcC-CCeEE-
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EGVEA-  126 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g~~~-  126 (351)
                      ...+.+.+|-|++-.+.+|+.|+.|..+|.++.....|.... .... .+++..||. ++..+....+..++. +.... 
T Consensus       312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence            367889999988889999999999999998544434443221 3356 888888984 565555556666663 22111 


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCc----cCCcc--------------c----c------cccccccCCceEEEEeCC
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTK----YTPTD--------------F----Y------KDMAEGKPYGQLRKYDPK  178 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~----~~~~~--------------~----~------~~~~~~~~~g~l~~~d~~  178 (351)
                      +......+.++.++.||.+.+.+-..+    +...+              +    .      ..+..|..++.||.|+..
T Consensus       391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence            222225677888999988776653211    11100              0    0      113445667778888877


Q ss_pred             CCeEEEee-cCccccceEEEcCCCCEEEEE
Q 018705          179 LKETTVLH-EGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       179 ~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      +|..-... ..-...|.++.+|....++.+
T Consensus       471 sgkll~~LsGHs~~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  471 SGKLLAVLSGHSKTVNCVSWNPADPEMFAS  500 (519)
T ss_pred             CCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence            77654443 334567778887766545443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.14  E-value=0.086  Score=45.63  Aligned_cols=96  Identities=13%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~  129 (351)
                      ..+-++.+++...+-..+..|..|++..|.. +++...+.... ..+...|..-+.+-.+..-+.++  .+|  .+.+..
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            4566764333334444466677888877765 55555555555 55555555444433333444444  366  566666


Q ss_pred             CCCCcccEEEccCCcEEEEeCC
Q 018705          130 DASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      ....+|.+.+..+-.+.++.+.
T Consensus       100 H~aqVNtV~fNeesSVv~Sgsf  121 (307)
T KOG0316|consen  100 HLAQVNTVRFNEESSVVASGSF  121 (307)
T ss_pred             ccceeeEEEecCcceEEEeccc
Confidence            6678899999888888877654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.14  E-value=0.0067  Score=56.85  Aligned_cols=180  Identities=13%  Similarity=0.182  Sum_probs=107.3

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc-CC-C-eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-EE-G-VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~-~~-g-~~~l~  128 (351)
                      +-|.+.+++.+..+.+....|.|+.+...++++..-....+... +++|+.+| .||++...+.++..+ .. . .+.+.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            34567777666666666778889999887777655445667777 99999988 577776555677666 23 3 56665


Q ss_pred             CCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee------cCc-cccceEEEcCC
Q 018705          129 PDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH------EGF-YFANGIALSKN  200 (351)
Q Consensus       129 ~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~------~~~-~~~ngi~~~~d  200 (351)
                      +.. ..-..+|.+.+|. |++..+                ..|-|-.||.++-....-.      ..+ ...+.+.|++|
T Consensus       384 D~G~v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  384 DDGSVHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD  446 (514)
T ss_pred             ecCccceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence            542 3445678888887 555544                2466788875532211111      111 23567899999


Q ss_pred             CCEEEEEecce--eEEeecCCCCceeEEec----c-CCCCCCceEECCCCC-EEEEEecC
Q 018705          201 EDFVVVCESWK--RYWLKGDRAGILDAFIE----N-LPGGPDNINLAPDGS-FWIGLIKM  252 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i~~~~~~~~~~~~~----~-~~g~pd~i~~d~~G~-lwva~~~~  252 (351)
                      .+.|-+++...  .+.+.-  .-...+|..    + .-+++..++|++.|. +=+|.-.+
T Consensus       447 ~qiLAiaS~~~knalrLVH--vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  447 AQILAIASRVKKNALRLVH--VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             hhhhhhhhhccccceEEEe--ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence            99776776554  333321  111233321    1 114566688998654 44444333

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.11  E-value=0.046  Score=51.43  Aligned_cols=143  Identities=16%  Similarity=0.121  Sum_probs=87.3

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---------CC-
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---------EG-  123 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---------~g-  123 (351)
                      .+++-+|.+..++.|+..|.||.|...+|+.- .+...-.... .|.|..||..+++.+..|.+.++.         ++ 
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~  163 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS  163 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence            36677754445556668999999999899752 2211113344 889999999998887777666541         11 


Q ss_pred             ---eEEecCCCCCcccEEEccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705          124 ---VEAIVPDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (351)
Q Consensus       124 ---~~~l~~~~~~~n~l~~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~  197 (351)
                         ...+.+....+.|+.++.-|   ++| |.+.                 +..+-.||.+.|.+-.-..--..++.+++
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~-----------------D~t~k~wdlS~g~LLlti~fp~si~av~l  225 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGGTNARLY-TASE-----------------DRTIKLWDLSLGVLLLTITFPSSIKAVAL  225 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCCccceEE-EecC-----------------CceEEEEEeccceeeEEEecCCcceeEEE
Confidence               12222222455666666544   233 2221                 33466677776654332222345778999


Q ss_pred             cCCCCEEEEEecceeEEee
Q 018705          198 SKNEDFVVVCESWKRYWLK  216 (351)
Q Consensus       198 ~~dg~~lyv~~~~~~~~i~  216 (351)
                      ||-+..+|++...+.+++.
T Consensus       226 Dpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  226 DPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             cccccEEEecCCcceEEee
Confidence            9999999998777755543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.10  E-value=0.14  Score=47.99  Aligned_cols=177  Identities=10%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-Eeec-C-CccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEec
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHI-D-SQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV  128 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~-~-~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~  128 (351)
                      ++...+.+..+..++.+|.....|..+|..-. .... . -... ..+|.+||.|+.+...+++++++.  .+  ...+.
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t-s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT-SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE-EeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence            55666555555556667755555666664422 2221 1 1234 788999999999888889999983  33  44454


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEe-ecCccccceEEEcCCCCEEEE
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVL-HEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~-~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      ....-+..|.++.+|...++...                 ++.|..||...- .+..+ .......+.+.|+..|.+|.+
T Consensus       387 ght~~vk~i~FsENGY~Lat~ad-----------------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAAD-----------------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEec-----------------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence            44466788999999965554432                 456888886421 12221 233345778999999987766


Q ss_pred             EecceeEEeecCCCCceeE---EeccCCCCCCceEECCCCCEEEEEec
Q 018705          207 CESWKRYWLKGDRAGILDA---FIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       207 ~~~~~~~~i~~~~~~~~~~---~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +...-++.+...+..+...   +. ...|..+++.+...-.+...+.+
T Consensus       450 ~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~aq~l~s~sm  496 (506)
T KOG0289|consen  450 AGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHAQYLASTSM  496 (506)
T ss_pred             ecceeEEEEEecccccceeeehhh-hcccccceeeecccceEEeeccc
Confidence            6322233333222333322   22 22356678888655544444443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.085  Score=49.89  Aligned_cols=151  Identities=20%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             ceEEcCCCCEEEEeCCC--------------CeEEEcCCC----------eEEecCCCCCcccEEEccC-CcEEEEeCCC
Q 018705           98 GLTTTKDGGVILCDNEK--------------GLLKVTEEG----------VEAIVPDASFTNDVIAASD-GTLYFTVAST  152 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~--------------gl~~~~~~g----------~~~l~~~~~~~n~l~~d~d-G~ly~t~~~~  152 (351)
                      -|++++||.|||+....              .+++++.++          .++++.+...|.+++++|. |.||+++...
T Consensus       181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            58999999999986443              133443222          2333334478999999996 8999998653


Q ss_pred             ccCCcccccc-cccccCCceEEEE-----eCC-C--CeEEE-------eecCccccceEEEcCC-------CCEEEEEec
Q 018705          153 KYTPTDFYKD-MAEGKPYGQLRKY-----DPK-L--KETTV-------LHEGFYFANGIALSKN-------EDFVVVCES  209 (351)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~g~l~~~-----d~~-~--~~~~~-------~~~~~~~~ngi~~~~d-------g~~lyv~~~  209 (351)
                      .-........ +-.+..-|.=+.|     ++. .  +....       ....-..|-||+|...       ++ ++|+..
T Consensus       261 d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~-lfV~~h  339 (399)
T COG2133         261 DALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD-LFVGAH  339 (399)
T ss_pred             CcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc-EEEEee
Confidence            1001011011 1111111211111     100 0  00000       0011134678888743       34 888886


Q ss_pred             ce--eEEeecCCCCc----eeEEec-cCCCCCCceEECCCCCEEEEEec
Q 018705          210 WK--RYWLKGDRAGI----LDAFIE-NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       210 ~~--~~~i~~~~~~~----~~~~~~-~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ..  .+...  ..+.    .+-+.. ...+.|.++.+++||.|++++-.
T Consensus       340 gsw~~~~~~--~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         340 GSWPVLRLR--PDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             cceeEEEec--cCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence            66  22222  1222    222222 23478999999999999998753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.98  E-value=0.004  Score=58.55  Aligned_cols=148  Identities=7%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             EecCCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC
Q 018705           45 KLGEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE  122 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~  122 (351)
                      .+.++  .-|.++-+.|++ +.+++|..+++|..||..++++ +.+...-+..+ .|.|-++|+-+|.....+-++++..
T Consensus       295 ~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~  371 (503)
T KOG0282|consen  295 RFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWEN  371 (503)
T ss_pred             EEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEc
Confidence            45554  358899998877 5667899999999999988875 23333334455 8888899999998887777888752


Q ss_pred             --C--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC----eEEEee--cCccc
Q 018705          123 --G--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK----ETTVLH--EGFYF  191 (351)
Q Consensus       123 --g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~----~~~~~~--~~~~~  191 (351)
                        +  .+..... ......+...|+|..+++.+.                 .+.++.|.....    ..+.+.  ..-.+
T Consensus       372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh~vaGy  434 (503)
T KOG0282|consen  372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGY  434 (503)
T ss_pred             CCCccchhhcchhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcceeccCc
Confidence              3  2222222 245567788888877776654                 234444431100    001111  11246


Q ss_pred             cceEEEcCCCCEEEEEeccee
Q 018705          192 ANGIALSKNEDFVVVCESWKR  212 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~~  212 (351)
                      +..+.+||||.+|.-+++.++
T Consensus       435 s~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  435 SCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             eeeEEEcCCCCeEEeecCCcc
Confidence            778999999998877887773

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.94  E-value=0.38  Score=45.63  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCC---eEEEcCCC-eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKG---LLKVTEEG-VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~g---l~~~~~~g-~~~l~~~  130 (351)
                      ++-|...+..+..+..||.+..||..+|++.........|  ++.+|..+ .=+++....+   +++++.+. +.++...
T Consensus       281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH  358 (524)
T KOG0273|consen  281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH  358 (524)
T ss_pred             EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence            6667644445666778999999998888775432222223  34444322 2333333332   34445555 5655555


Q ss_pred             CCCcccEEEccCCcEEEEeCC
Q 018705          131 ASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      .+.+|.+..+|.|.+..+.+.
T Consensus       359 ~g~V~alk~n~tg~LLaS~Sd  379 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSD  379 (524)
T ss_pred             cCceEEEEECCCCceEEEecC
Confidence            578999999999999988875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.93  E-value=0.02  Score=49.82  Aligned_cols=175  Identities=11%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      -..++|+.+.++|.+|..+.-+..+|.+.-+  .+.+....+... .+.+-....-++.....+.+|++  .+|  ++.+
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir-~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL  181 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIR-TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL  181 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcce-eEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence            4577888667788887766533333432222  222222222122 22233333333333455667776  366  4544


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      ..+ ..++++.+.+||++.....+                  +.|-.+|+++-.+-.-.+--...+...++|+.. +||+
T Consensus       182 ~~~-s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVa  241 (334)
T KOG0278|consen  182 EFN-SPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVA  241 (334)
T ss_pred             ecC-CCCcceeeccCCCEEEEecC------------------ceeEEeccccccceeeccCccccccccccCCCc-eEEe
Confidence            433 67899999999976543322                  367788876432211111112334456889886 7776


Q ss_pred             ecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          208 ESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       208 ~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      -...    +|....  ..+...+..+.+|....+.+.++|.+|.....
T Consensus       242 Gged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             cCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccCC
Confidence            5333    343321  11223333344554566788899988887543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.86  E-value=0.16  Score=43.50  Aligned_cols=119  Identities=11%  Similarity=0.070  Sum_probs=70.8

Q ss_pred             CEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCE-EEEe--CCCCeEEEcCCC--eEEecCCCCCcccEEEccCCcEE
Q 018705           73 GWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGV-ILCD--NEKGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLY  146 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L-~v~d--~~~gl~~~~~~g--~~~l~~~~~~~n~l~~d~dG~ly  146 (351)
                      ..|++++..+.....+... .+... .++..|+|+- .++.  ....+..++.++  +..+..  ...|.|..+|+|++.
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFL  115 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEE
Confidence            3477776655544444322 23356 8999999964 3443  223344444444  444433  467899999999877


Q ss_pred             EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      +.....              ...|.|..||..+.+..... .......+++||||+++..+.+
T Consensus       116 ~~~g~~--------------n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  116 VLAGFG--------------NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEEEcc--------------CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence            665421              12467899998754432222 2234678999999996665544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.85  E-value=0.38  Score=46.21  Aligned_cols=71  Identities=14%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--e---EEEEeecCCccccceEEcCCCCEEEEeCCC-CeEEEcCCC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE--T---LVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~---~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~~~g  123 (351)
                      .-..+++||.+-+++.|.-|.-|..||.+.-  .   ++.+.....++...+.+...|..+++-++. ....++++|
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence            3457899988889999999999999997432  1   222222223333277777777544443333 334445566

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.78  E-value=0.028  Score=50.86  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=79.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEee-------cCC--ccccceEEcCCCCEEEEeCCC----CeEEE
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKH-------IDS--QSLLGLTTTKDGGVILCDNEK----GLLKV  119 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~-------~~~--~p~~gl~~d~~G~L~v~d~~~----gl~~~  119 (351)
                      -.++++. +++.++|.+.-.-+..+++ +..++ .|..       +..  ..+ ||+++...--||+.-.+    +-+|-
T Consensus       105 iHdia~~-~~~l~fVNT~fSCLatl~~-~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       105 AHDLALG-AGRLLFVNTLFSCLATVSP-DYSFVPLWKPPFISKLAPEDRCHLN-GMALDDGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             hhheeec-CCcEEEEECcceeEEEECC-CCccccccCCccccccCccCceeec-ceeeeCCeEEEEEEeeccCCcccccc
Confidence            4566774 5566666665555667665 33332 2211       111  346 99985433457653221    22333


Q ss_pred             cC-CC--eEE------ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705          120 TE-EG--VEA------IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (351)
Q Consensus       120 ~~-~g--~~~------l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  190 (351)
                      .+ +|  +-.      +.++..+|.+-.. .+|++|+.|+.                 .|.+.++|+++|+.+.+..--.
T Consensus       182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG  243 (335)
T TIGR03032       182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG  243 (335)
T ss_pred             cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence            32 33  211      2222234433322 36899999987                 5799999999899988887778


Q ss_pred             ccceEEEcCCCCEEEEEec
Q 018705          191 FANGIALSKNEDFVVVCES  209 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~  209 (351)
                      +|.|+++.  |+.++|+-+
T Consensus       244 ~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       244 FTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             CCccccee--CCEEEEEec
Confidence            99999998  776777653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.69  E-value=0.0034  Score=35.51  Aligned_cols=20  Identities=25%  Similarity=0.562  Sum_probs=17.3

Q ss_pred             CCcccEEEccCCcEEEEeCC
Q 018705          132 SFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~  151 (351)
                      ..|.+|+++++|+||++|..
T Consensus         2 ~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECC
T ss_pred             cCCcEEEEeCCCCEEEEECC
Confidence            46889999999999999965

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.67  E-value=0.0027  Score=35.91  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=21.5

Q ss_pred             ccccceEEEcCCCCEEEEEecce-eEEe
Q 018705          189 FYFANGIALSKNEDFVVVCESWK-RYWL  215 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~-~~~i  215 (351)
                      +..|.||+++++|+ +||+|+.+ |+++
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEE
Confidence            35799999998887 99999887 6653

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.66  E-value=0.17  Score=47.12  Aligned_cols=126  Identities=13%  Similarity=0.215  Sum_probs=74.9

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCE------EEEEEcCC-----CeEE-----EEeecCC--------ccccceEEcCCCC
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGW------VKYFILHN-----ETLV-----NWKHIDS--------QSLLGLTTTKDGG  106 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~------I~~~d~~~-----g~~~-----~~~~~~~--------~p~~gl~~d~~G~  106 (351)
                      +.+=.+|++++.++.+|+-+.+|.      ++.++...     +.++     .+....+        .+- +|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            445578999977788888776776      77665432     1111     1111112        456 899988999


Q ss_pred             EEEEeCCC-------CeEEEcCCC--eEEe--cCC--------C-----CCcccEEEccCCc-EEEEeCCCccCCccccc
Q 018705          107 VILCDNEK-------GLLKVTEEG--VEAI--VPD--------A-----SFTNDVIAASDGT-LYFTVASTKYTPTDFYK  161 (351)
Q Consensus       107 L~v~d~~~-------gl~~~~~~g--~~~l--~~~--------~-----~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~  161 (351)
                      +||++.+.       .|++++.+|  .+.+  ...        .     ....++++.+||+ ||+...+...+....  
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~--  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR--  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc--
Confidence            99998665       578888777  3433  111        0     5688899999997 887765421110000  


Q ss_pred             ccccccCCceEEEEeCCC
Q 018705          162 DMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       162 ~~~~~~~~g~l~~~d~~~  179 (351)
                      ........-++++||+++
T Consensus       176 ~~~~~~~~~ri~~~d~~~  193 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKT  193 (326)
T ss_pred             cccccCceEEEEEecCCC
Confidence            000011113688999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.65  E-value=0.21  Score=43.97  Aligned_cols=144  Identities=9%  Similarity=0.087  Sum_probs=82.3

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC---eEEecCCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG---VEAIVPDA  131 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g---~~~l~~~~  131 (351)
                      -+++.|+++.+-++..+..|..+|..+.+...-....-..+ -+...-++++|+.+.+.|.+.+-. -.   +..+....
T Consensus       111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            56777777888888888889888876554432222222344 677777788999888877666542 11   22222222


Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEEEEecc
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~lyv~~~~  210 (351)
                      ...-.|.+||+|+-+.+-+.                 +..+-.||++.---.+....+..| .-|.|+.||+.|--++.+
T Consensus       190 snCicI~f~p~GryfA~GsA-----------------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGSA-----------------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             cceEEEEECCCCceEeeccc-----------------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            34455678999976655443                 234566666411112223334333 357889999743333333


Q ss_pred             eeEEeec
Q 018705          211 KRYWLKG  217 (351)
Q Consensus       211 ~~~~i~~  217 (351)
                      .-+.|..
T Consensus       253 h~IDIA~  259 (313)
T KOG1407|consen  253 HFIDIAE  259 (313)
T ss_pred             ceEEeEe
Confidence            3566654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.51  Score=42.43  Aligned_cols=190  Identities=16%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             CccccceEEcCCCC-EEEEe-CCCCeEEEcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705           93 SQSLLGLTTTKDGG-VILCD-NEKGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        93 ~~p~~gl~~d~~G~-L~v~d-~~~gl~~~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      .+.. +|.++++-+ ||... ....++.++.+|  ++++.-. ...|..|+.-.+|.+-+++..                
T Consensus        86 ~nvS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER----------------  148 (316)
T COG3204          86 ANVS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER----------------  148 (316)
T ss_pred             cccc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh----------------
Confidence            3456 999998875 55543 334688888888  6665433 367888888888877777653                


Q ss_pred             CCceEE--EEeCCCCeEEEe-----ecCc----cccceEEEcCCCCEEEEEecce--e-EEeec-CCC----------Cc
Q 018705          168 PYGQLR--KYDPKLKETTVL-----HEGF----YFANGIALSKNEDFVVVCESWK--R-YWLKG-DRA----------GI  222 (351)
Q Consensus       168 ~~g~l~--~~d~~~~~~~~~-----~~~~----~~~ngi~~~~dg~~lyv~~~~~--~-~~i~~-~~~----------~~  222 (351)
                       ...++  .+|+++......     ....    ..=.|+|.++..+.+|++-..+  + |.+.. ++.          ..
T Consensus       149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence             23443  445543322111     1111    1234899999999999987766  3 33331 100          00


Q ss_pred             eeEEeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeE
Q 018705          223 LDAFIENLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI  301 (351)
Q Consensus       223 ~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~  301 (351)
                      ...|...    ..++.+|+. |+|+|=..                                    +...++++|. +|++
T Consensus       228 ~~~f~~D----vSgl~~~~~~~~LLVLS~------------------------------------ESr~l~Evd~-~G~~  266 (316)
T COG3204         228 RDLFVLD----VSGLEFNAITNSLLVLSD------------------------------------ESRRLLEVDL-SGEV  266 (316)
T ss_pred             cceEeec----cccceecCCCCcEEEEec------------------------------------CCceEEEEec-CCCe
Confidence            1122211    234566643 45665432                                    2347899999 9998


Q ss_pred             EEEEECCCC---Cc--ccceeEEE-EECCEEEEEecCCCeEEEEeCC
Q 018705          302 IRDFNDPDA---TY--ISFVTSAA-EFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       302 ~~~~~~~~g---~~--~~~~~~~~-~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      +..+.-..|   ..  ..+.-++. .++|.||+.+= .+..++|...
T Consensus       267 ~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F~~~  312 (316)
T COG3204         267 IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRFTPQ  312 (316)
T ss_pred             eeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceecccC
Confidence            765543222   21  22333444 34689999984 6667777643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=0.49  Score=41.85  Aligned_cols=153  Identities=12%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCC---eEEE
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKG---LLKV  119 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~g---l~~~  119 (351)
                      +.++.-..-+++|+.|.+..|-+++.|..+..+...+++++...   ......- ++++.++|++..+-+...   ++.+
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            33344456779999988888888999999888887778876543   3334566 899999998877544433   3334


Q ss_pred             cCCC-eEE---ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cCcccc
Q 018705          120 TEEG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFA  192 (351)
Q Consensus       120 ~~~g-~~~---l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~~~~  192 (351)
                      +.++ .+.   +......+-.+...|.-.|.|+.+..               ..=++|+.++ .+....+.   ..-...
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD---------------nTIk~~~~~~-dddW~c~~tl~g~~~TV  198 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD---------------NTIKVYRDED-DDDWECVQTLDGHENTV  198 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC---------------CeEEEEeecC-CCCeeEEEEecCccceE
Confidence            4334 333   33333455667777766688887641               1124555543 23332222   222245


Q ss_pred             ceEEEcCCCCEEEEEecce--eEEe
Q 018705          193 NGIALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~--~~~i  215 (351)
                      -+++|++.|.+|.-++...  ++|.
T Consensus       199 W~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  199 WSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             EEEEecCCCceEEEecCCcceEeee
Confidence            5789999998777766555  6775

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.96  Score=44.81  Aligned_cols=144  Identities=10%  Similarity=-0.022  Sum_probs=85.8

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-E-EEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEec
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-V-NWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~-~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~  128 (351)
                      .++|+..+.+.|-++-.+|.|-.|++..+=+ + .+. ......- +|++.+.|+|+-....+.+...|. ++  +..+.
T Consensus        29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d  107 (691)
T KOG2048|consen   29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID  107 (691)
T ss_pred             EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEec
Confidence            4778887788899999999999999865422 1 222 2223455 899988889998877666777775 55  22221


Q ss_pred             CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEE
Q 018705          129 PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~l  204 (351)
                      .....+.++++.|.+. +-+.+.                  +|-++.++-..+.++..   ...-...-.+.+++++..+
T Consensus       108 ~~gg~IWsiai~p~~~~l~Igcd------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i  169 (691)
T KOG2048|consen  108 SNGGAIWSIAINPENTILAIGCD------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI  169 (691)
T ss_pred             CCCcceeEEEeCCccceEEeecC------------------CceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence            1125566667666553 334322                  24455555444444321   1112334457888888767


Q ss_pred             EEEecceeEEeec
Q 018705          205 VVCESWKRYWLKG  217 (351)
Q Consensus       205 yv~~~~~~~~i~~  217 (351)
                      ..+..++++.+-+
T Consensus       170 ~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  170 AGGSIDGVIRIWD  182 (691)
T ss_pred             EecccCceEEEEE
Confidence            7777666443333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.24  Score=50.52  Aligned_cols=174  Identities=9%  Similarity=0.078  Sum_probs=98.1

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc-CCC--eEEecCCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDA  131 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~-~~g--~~~l~~~~  131 (351)
                      +++..  .+.+.+++.++.|.++....++...+.....-|...++++.+|...++.+..- +-.++ .++  .+.+....
T Consensus        61 ~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~  138 (933)
T KOG1274|consen   61 SIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD  138 (933)
T ss_pred             EEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence            44443  45677788888888887656654433222223443889999998777655543 33334 344  55554444


Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc----c----cc-ceEEEcCCCC
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF----Y----FA-NGIALSKNED  202 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~----~----~~-ngi~~~~dg~  202 (351)
                      .-+-+|.++|+|.+..+.+.                 +|.|..|+..++.......+.    .    .+ +-++++|++.
T Consensus       139 apVl~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g  201 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG  201 (933)
T ss_pred             CceeeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence            56778899999988776653                 678999988766543332221    1    11 2368999966


Q ss_pred             EEEEEecce---eEEeecCCCCceeEEecc-CCCCCCceEECCCCCEEEEEe
Q 018705          203 FVVVCESWK---RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       203 ~lyv~~~~~---~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~  250 (351)
                      .+.+....+   .|...+-  ...-.+.+. ....-.-+.+++.|.+..+..
T Consensus       202 ~la~~~~d~~Vkvy~r~~w--e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  202 TLAVPPVDNTVKVYSRKGW--ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             eEEeeccCCeEEEEccCCc--eeheeecccccccceEEEEEcCCCcEEeeec
Confidence            455555555   3444321  000111111 111123457888886555543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.51  E-value=0.41  Score=47.18  Aligned_cols=190  Identities=13%  Similarity=0.096  Sum_probs=94.6

Q ss_pred             eEEEeeCCCeEEEEEcCC------------------EEEEEEcCCCeEEEEeecC----------CccccceEE-cCCCC
Q 018705           56 DVSVVVSKGALYTATRDG------------------WVKYFILHNETLVNWKHID----------SQSLLGLTT-TKDGG  106 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g------------------~I~~~d~~~g~~~~~~~~~----------~~p~~gl~~-d~~G~  106 (351)
                      +.++|+.++.+|+++.++                  .|+.+|.++|+..-.....          ..|. -... +-+|.
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~-~~~~~~~~g~  299 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS-LADIKPKDGK  299 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe-EEeccccCCC
Confidence            467776689999998665                  7999999999764221111          1111 0111 12343


Q ss_pred             ----EEEEeCCCCeEEEcC-CCeEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe
Q 018705          107 ----VILCDNEKGLLKVTE-EGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE  181 (351)
Q Consensus       107 ----L~v~d~~~gl~~~~~-~g~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  181 (351)
                          ++++...+.++.++. +|...+..... -.+++.++ +.+|+......................|.|+-+|.++|+
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence                677766666888885 66332222111 12344455 778875422111000000000011235789999998887


Q ss_pred             EEEeecCcc--------ccc---eEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCC--CceEECCCCCEEE
Q 018705          182 TTVLHEGFY--------FAN---GIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGP--DNINLAPDGSFWI  247 (351)
Q Consensus       182 ~~~~~~~~~--------~~n---gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~p--d~i~~d~~G~lwv  247 (351)
                      ..--.....        .+.   .++.  .++.+|+.+..+ .+.++ .+.|+..--. .+++..  .=+.+..+|++||
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald-~~tG~~lW~~-~~~~~~~a~P~~~~~~g~~yv  453 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFD-ATTGKELWKF-RTPSGIQATPMTYEVNGKQYV  453 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEE-CCCCceeeEE-ECCCCceEcCEEEEeCCEEEE
Confidence            643222110        111   1233  334688877666 44444 3344432111 222111  1134456899999


Q ss_pred             EEecC
Q 018705          248 GLIKM  252 (351)
Q Consensus       248 a~~~~  252 (351)
                      ++..+
T Consensus       454 ~~~~g  458 (488)
T cd00216         454 GVMVG  458 (488)
T ss_pred             EEEec
Confidence            98654

The alignment model contains an 8-bladed beta-propeller.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.49  Score=41.09  Aligned_cols=128  Identities=10%  Similarity=0.087  Sum_probs=79.8

Q ss_pred             EEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC----eEEecCCCCCcccEEEc
Q 018705           68 TATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG----VEAIVPDASFTNDVIAA  140 (351)
Q Consensus        68 v~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g----~~~l~~~~~~~n~l~~d  140 (351)
                      .+..|..++.||-.+|++ ++|....+..+ .++|+.+-.+.+..+-..-++.+  +..    ++++......+.+|.+.
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~  154 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA  154 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence            344577899999989987 56666667788 99998887777765555555555  221    33333222334343332


Q ss_pred             cCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc-cccceEEEcCCCCEEEEEecceeEEeec
Q 018705          141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCESWKRYWLKG  217 (351)
Q Consensus       141 ~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~ngi~~~~dg~~lyv~~~~~~~~i~~  217 (351)
                        +...++-                 .-+|.+..||...|+..  .+-+ ...|.+.+++|++.+.++..+..+.+-+
T Consensus       155 --~heIvaG-----------------S~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  155 --EHEIVAG-----------------SVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             --ccEEEee-----------------ccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence              3334433                 33688999987766543  2333 3458899999999777777666444433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.49  E-value=1  Score=44.62  Aligned_cols=145  Identities=12%  Similarity=0.140  Sum_probs=85.9

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCC-EEEE-eCCCCeEEEc-CCC-
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILC-DNEKGLLKVT-EEG-  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~-L~v~-d~~~gl~~~~-~~g-  123 (351)
                      +.-..-|+++|. ++++||....+|.|..||+.+++...- ...++... .|+..+.+. +-|+ +.+ -++-+. ..+ 
T Consensus        67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~IgcddG-vl~~~s~~p~~  143 (691)
T KOG2048|consen   67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDDG-VLYDFSIGPDK  143 (691)
T ss_pred             CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCCc-eEEEEecCCce
Confidence            344567899998 799999999999999999988866433 33334445 777776664 4444 322 222222 122 


Q ss_pred             eE---EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe----ecCccc-----
Q 018705          124 VE---AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGFYF-----  191 (351)
Q Consensus       124 ~~---~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----~~~~~~-----  191 (351)
                      ++   .+..+..++-++..+++|.-.++-+.                 +|.|..||.++++.-..    ..++..     
T Consensus       144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-----------------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-----------------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             EEEEeecccccceEEEEEecCCccEEEeccc-----------------CceEEEEEcCCCceEEEeeecccccccCCceE
Confidence            22   22222267778888888863344332                 45677788776553221    122222     


Q ss_pred             cceEEEcCCCCEEEEEecce--eEE
Q 018705          192 ANGIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~--~~~  214 (351)
                      ..++.+=.++. +.-+|+.+  .+|
T Consensus       207 VWSv~~Lrd~t-I~sgDS~G~V~FW  230 (691)
T KOG2048|consen  207 VWSVLFLRDST-IASGDSAGTVTFW  230 (691)
T ss_pred             EEEEEEeecCc-EEEecCCceEEEE
Confidence            23445546664 66677766  677

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.47  E-value=0.71  Score=42.49  Aligned_cols=71  Identities=18%  Similarity=0.094  Sum_probs=46.2

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCC-CeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN-ETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~-g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g  123 (351)
                      ..-|-+.|.|.+..|..|+.||.+++|.... +..+.+...+.+.. .=.|-++|...++-...|.++++ + +|
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct-~G~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT-CGEFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc-cccccCCCceEEEEecCceEEEEecCCC
Confidence            3456677888778888999999999998655 34455544333333 33455788555554456777776 3 66

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.42  E-value=0.035  Score=49.79  Aligned_cols=135  Identities=13%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             cccceEEcCCCCEEEEeCCCCeEEEcC-C------------------C---eEEecCCCCCcccEEEccCCcEEEEeCCC
Q 018705           95 SLLGLTTTKDGGVILCDNEKGLLKVTE-E------------------G---VEAIVPDASFTNDVIAASDGTLYFTVAST  152 (351)
Q Consensus        95 p~~gl~~d~~G~L~v~d~~~gl~~~~~-~------------------g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~  152 (351)
                      |...-+|.+||.|+.+.+...-+++-. .                  +   ++++.+...-+|++.+.|...|.++.+. 
T Consensus       114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr-  192 (430)
T KOG0640|consen  114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR-  192 (430)
T ss_pred             ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC-
Confidence            333677889998887655443233210 1                  1   2334444467899999999989888764 


Q ss_pred             ccCCcccccccccccCCceEEEEeCCCCeEEE---eecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEE
Q 018705          153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV---LHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAF  226 (351)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~  226 (351)
                                      ++.|-.||-+.-..+.   +.........|.++|.|.+|.++..-.   .|.+.     +.+.|
T Consensus       193 ----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-----T~Qcf  251 (430)
T KOG0640|consen  193 ----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-----TYQCF  251 (430)
T ss_pred             ----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc-----ceeEe
Confidence                            4556666643211111   112223456789999999888865443   35444     22344


Q ss_pred             eccCC--CCCC---ceEECCCCCEEEEEec
Q 018705          227 IENLP--GGPD---NINLAPDGSFWIGLIK  251 (351)
Q Consensus       227 ~~~~~--g~pd---~i~~d~~G~lwva~~~  251 (351)
                      ....|  +...   .+..++.|++|++...
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEecc
Confidence            43212  1112   2456788999998754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.40  E-value=0.35  Score=41.28  Aligned_cols=115  Identities=20%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             CeEEEcC-CC-eEEecCC-CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705          115 GLLKVTE-EG-VEAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (351)
Q Consensus       115 gl~~~~~-~g-~~~l~~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  190 (351)
                      .+++++. +. ...+... ...+.+++.+|+|. +.+....                ....+..||.+...+..+.  -.
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~--~~  101 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG--TQ  101 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec--CC
Confidence            4566653 33 3333221 13588999999995 4443321                1236888887644443332  24


Q ss_pred             ccceEEEcCCCCEEEEEecce-----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          191 FANGIALSKNEDFVVVCESWK-----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~-----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ..|.|.++|+|+++.++..++     .+|  +..  +.+............++.+++|++.++...
T Consensus       102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~w--d~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  102 PRNTISWSPDGRFLVLAGFGNLNGDLEFW--DVR--KKKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CceEEEECCCCCEEEEEEccCCCcEEEEE--ECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            568899999999888876543     344  211  222222211122456789999998887643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.40  E-value=0.025  Score=51.65  Aligned_cols=144  Identities=8%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             ceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEE-EEeCCCCeEEEc-C--CC-eEEec
Q 018705           55 EDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVT-E--EG-VEAIV  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~-v~d~~~gl~~~~-~--~g-~~~l~  128 (351)
                      .++-++|-+-.+.. +..|+.|+.+|..++....-.....+++ +|+++|++-.| +++....+|-+| .  .. ..+..
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            45666654444443 3468899999987775533333456788 99999987444 455556788877 2  23 44444


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCCCEEEE
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      +..+.+.++.++|-|.=+++.+.                 +..|-.|....+.-+.+  ....+..-++.+|.|.++++-
T Consensus       270 dhvsAV~dVdfsptG~Efvsgsy-----------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSY-----------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS  332 (433)
T ss_pred             ccceeEEEeccCCCcchhccccc-----------------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence            44477888999999987777664                 22344444333332222  234567778999999985554


Q ss_pred             Eecc-e-eEEee
Q 018705          207 CESW-K-RYWLK  216 (351)
Q Consensus       207 ~~~~-~-~~~i~  216 (351)
                      ++.. + |+|-.
T Consensus       333 GSdd~nvRlWka  344 (433)
T KOG0268|consen  333 GSDDGNVRLWKA  344 (433)
T ss_pred             cCCCcceeeeec
Confidence            3333 3 88854

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.39  E-value=0.086  Score=48.80  Aligned_cols=174  Identities=15%  Similarity=0.162  Sum_probs=97.0

Q ss_pred             CCccccccCCCCC--CCcCccCceEecCCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccce
Q 018705           23 SVSSLASLLSISK--ESSSMKGLTKLGEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGL   99 (351)
Q Consensus        23 ~~~~~~~~~~~p~--~~~~l~~~~~i~~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl   99 (351)
                      +=|...+.|+.|.  ....|+.-.+...|.-..---++|.|-. +.|..+..|+.|..|+..+|+.-.-.......+ .+
T Consensus       101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~  179 (472)
T KOG0303|consen  101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SM  179 (472)
T ss_pred             CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EE
Confidence            4444455677777  4455553333333432333356676644 445667778999999988886532223445567 89


Q ss_pred             EEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEE
Q 018705          100 TTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (351)
Q Consensus       100 ~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~  174 (351)
                      .++.+|.++++.....-+|+. + .|  +..-... ...+.-..+-.+|. .+|+.-++.+             ...+-.
T Consensus       180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~s-------------eRq~aL  245 (472)
T KOG0303|consen  180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMS-------------ERQIAL  245 (472)
T ss_pred             EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeecccccc-------------ccceec
Confidence            999999999988777666665 4 56  2222111 14555566666776 4444322221             123445


Q ss_pred             EeCCCCeEEEeecCccccceEE---EcCCCCEEEEEecce
Q 018705          175 YDPKLKETTVLHEGFYFANGIA---LSKNEDFVVVCESWK  211 (351)
Q Consensus       175 ~d~~~~~~~~~~~~~~~~ngi~---~~~dg~~lyv~~~~~  211 (351)
                      |||+.-+.-.....+...|||.   .++|.+.+|++--+.
T Consensus       246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD  285 (472)
T KOG0303|consen  246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD  285 (472)
T ss_pred             cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC
Confidence            5554322112223344455554   367777888875443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.37  E-value=0.8  Score=42.13  Aligned_cols=141  Identities=17%  Similarity=0.209  Sum_probs=91.8

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--  123 (351)
                      |....-+++++++.--.+|....|+.|-+||....++. .+...-...+ ++...|.-++.++.......|++.  +.  
T Consensus       191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence            44566789999866668888889999999999777663 3322223355 777777777777766777888873  33  


Q ss_pred             eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCC
Q 018705          124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNE  201 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg  201 (351)
                      +.++....+.+..+..-+ |+.+| |.+.                 ++.|..||...|+... +...-.....++++|..
T Consensus       270 V~~l~GH~~~V~~V~~~~~dpqvi-t~S~-----------------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e  331 (460)
T KOG0285|consen  270 VHVLSGHTNPVASVMCQPTDPQVI-TGSH-----------------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE  331 (460)
T ss_pred             EEEecCCCCcceeEEeecCCCceE-EecC-----------------CceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence            666665445556665554 56665 3332                 4567888876665433 33334456678899987


Q ss_pred             CEEEEEec
Q 018705          202 DFVVVCES  209 (351)
Q Consensus       202 ~~lyv~~~  209 (351)
                      . +|.+..
T Consensus       332 ~-~fASas  338 (460)
T KOG0285|consen  332 N-LFASAS  338 (460)
T ss_pred             h-hhhccC
Confidence            5 555443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.34  E-value=0.056  Score=54.17  Aligned_cols=143  Identities=15%  Similarity=0.221  Sum_probs=91.7

Q ss_pred             CceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-eEE----
Q 018705           54 PEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA----  126 (351)
Q Consensus        54 pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~~~----  126 (351)
                      -.||+|.|.++++|+ |.-||++..|+-.+.++..|.....-.. .+++.|+|...|.....|..++. ..| .-+    
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            469999998888887 6779999999987888888876655566 89999999765555455655554 344 111    


Q ss_pred             ecCC--C----CCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc---ceE
Q 018705          127 IVPD--A----SFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA---NGI  195 (351)
Q Consensus       127 l~~~--~----~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---ngi  195 (351)
                      +...  .    ..+.++.+.|-.  .+.||..                  +.+|.+||..+.++.....++...   .--
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------------------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A  552 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------------------DSRIRIYDGRDKDLVHKFKGFRNTSSQISA  552 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecC------------------CCceEEEeccchhhhhhhcccccCCcceee
Confidence            1110  0    346666655422  4666653                  347888887544443334444333   335


Q ss_pred             EEcCCCCEEEEEecce--eEEe
Q 018705          196 ALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~--~~~i  215 (351)
                      .|+.||+.++.+..+.  .+|-
T Consensus       553 sfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  553 SFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             eEccCCCEEEEeecCceEEEEe
Confidence            7888999877766555  4553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.33  E-value=0.62  Score=43.60  Aligned_cols=135  Identities=12%  Similarity=0.074  Sum_probs=76.1

Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceE
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l  172 (351)
                      -|.+.||.+..++=......+++ . +|  .+.+.... ..+.+.+.-|||.=+++.+.                 ++.+
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~-----------------dr~i  336 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP-----------------DRTI  336 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC-----------------CCcE
Confidence            68889999766654444445555 2 56  33343332 45667777788755555443                 4578


Q ss_pred             EEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCceeE-EeccCCCCCCceEECCCCCEEEEEe
Q 018705          173 RKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDA-FIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       173 ~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~-~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +.+|.++.....+.. .......+++++||++++......++.+-+. ..+.+. .+.. ......+..+.+|++.+...
T Consensus       337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~-e~~~dr~lise-~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR-EARVDRGLISE-EQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeech-hhhhhhccccc-cCceeEEEEcCCCcEEEEEc
Confidence            888876433222211 1234557899999998887776664443221 011111 2211 11234567888998777654


Q ss_pred             c
Q 018705          251 K  251 (351)
Q Consensus       251 ~  251 (351)
                      .
T Consensus       415 ~  415 (519)
T KOG0293|consen  415 Q  415 (519)
T ss_pred             c
Confidence            3

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.29  E-value=0.4  Score=46.85  Aligned_cols=119  Identities=16%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             CCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-------eEEEeec--------C-------
Q 018705          132 SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-------ETTVLHE--------G-------  188 (351)
Q Consensus       132 ~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~~--------~-------  188 (351)
                      .+|.+|++.|. |.+|++.+...-. .+..-..-....-|.|++|-|.++       +.+.+..        .       
T Consensus       417 dRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         417 DRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             cCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            78999999985 7899987642100 000000111123467888877765       3333321        1       


Q ss_pred             ---ccccceEEEcCCCCEEEEEecce------eEE------eecCCCCceeEEecc-CCCCCCceEECCCCC-EEEEEec
Q 018705          189 ---FYFANGIALSKNEDFVVVCESWK------RYW------LKGDRAGILDAFIEN-LPGGPDNINLAPDGS-FWIGLIK  251 (351)
Q Consensus       189 ---~~~~ngi~~~~dg~~lyv~~~~~------~~~------i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~-lwva~~~  251 (351)
                         +.+|++|+|++.|+ ||+++...      ++.      ..+++.++...|... ...---|.++.+||+ ++|+...
T Consensus       496 ~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQH  574 (616)
T COG3211         496 ANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQH  574 (616)
T ss_pred             cccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecC
Confidence               34599999999998 99976543      111      123456666655432 111124678999985 9999876


Q ss_pred             C
Q 018705          252 M  252 (351)
Q Consensus       252 ~  252 (351)
                      +
T Consensus       575 P  575 (616)
T COG3211         575 P  575 (616)
T ss_pred             C
Confidence            5

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.28  E-value=0.58  Score=44.11  Aligned_cols=79  Identities=20%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             eEEEEeCCCCeEEEeec-------CccccceEEEcC---CCC-EEEEEecce---eEEeecCCCCc-----eeEEeccCC
Q 018705          171 QLRKYDPKLKETTVLHE-------GFYFANGIALSK---NED-FVVVCESWK---RYWLKGDRAGI-----LDAFIENLP  231 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~-------~~~~~ngi~~~~---dg~-~lyv~~~~~---~~~i~~~~~~~-----~~~~~~~~~  231 (351)
                      ++|++|+.++.++.+..       .+..+.|+|+..   +|+ +.++....+   .|.+.....+.     ++.|  .++
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~  207 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG  207 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence            58888988887766532       334578999853   455 444455444   56665332332     2233  244


Q ss_pred             CCCCceEECCC-CCEEEEEec
Q 018705          232 GGPDNINLAPD-GSFWIGLIK  251 (351)
Q Consensus       232 g~pd~i~~d~~-G~lwva~~~  251 (351)
                      +.+-|++.|.+ |.||++...
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~  228 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED  228 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEEecccCCEEEecCc
Confidence            56788888765 689999653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.27  E-value=0.9  Score=41.62  Aligned_cols=173  Identities=16%  Similarity=0.212  Sum_probs=82.2

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~  130 (351)
                      +|.++  ++..|+....|.|++-.-....++.+.   ...+.|. ++..-.++..+++.....+++-...|  -+.+...
T Consensus        66 ~I~f~--~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~  142 (302)
T PF14870_consen   66 SISFD--GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSE  142 (302)
T ss_dssp             EEEEE--TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S
T ss_pred             EEEec--CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccC
Confidence            45554  345666556675555543223455543   2235666 66665667777776666666665555  4443333


Q ss_pred             -CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE-EEeCCCCeEEEeec-CccccceEEEcCCCCEEEEE
Q 018705          131 -ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       131 -~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~  207 (351)
                       ....+++...+||++.....                  .|.++ .+++.....+.... .-.....|.+++|+. ||+.
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~  203 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWML  203 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEE
T ss_pred             CcceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEEE
Confidence             36677888888987444433                  24554 44554222333322 234556788999987 8887


Q ss_pred             ecceeEEeecCCCCceeEEecc-CC----CC-CCceEECCCCCEEEEEec
Q 018705          208 ESWKRYWLKGDRAGILDAFIEN-LP----GG-PDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       208 ~~~~~~~i~~~~~~~~~~~~~~-~~----g~-pd~i~~d~~G~lwva~~~  251 (351)
                      ..++.+...+. ....+.+... .+    ++ --.++..+++.+|++...
T Consensus       204 ~~Gg~~~~s~~-~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  204 ARGGQIQFSDD-PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             ETTTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             eCCcEEEEccC-CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            75555555431 1122222211 11    11 012477788999998765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.25  E-value=0.86  Score=42.11  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-------eEE--
Q 018705          144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-------RYW--  214 (351)
Q Consensus       144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-------~~~--  214 (351)
                      ++|+.|....            + ..++++.+|.+++++.-.......+| ++++||++.+|++++--       |-.  
T Consensus         4 rvyV~D~~~~------------~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv   69 (342)
T PF06433_consen    4 RVYVQDPVFF------------H-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVV   69 (342)
T ss_dssp             EEEEEE-GGG------------G-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCccc------------c-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEE
Confidence            6888886411            1 13589999999888755555445555 77999999999987632       222  


Q ss_pred             -eecCCCCc--eeEEeccC-----CCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCC
Q 018705          215 -LKGDRAGI--LDAFIENL-----PGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  285 (351)
Q Consensus       215 -i~~~~~~~--~~~~~~~~-----~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
                       +-+..+-.  .|+.+...     -.++..+.+..||+ +||....+                                 
T Consensus        70 ~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP---------------------------------  116 (342)
T PF06433_consen   70 EIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP---------------------------------  116 (342)
T ss_dssp             EEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS---------------------------------
T ss_pred             EEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC---------------------------------
Confidence             22222111  22222211     01345567888886 77776543                                 


Q ss_pred             CCceEEEEEECCCCeEEEEEECC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDP  308 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~  308 (351)
                        ...|-.+|-+.+|.+..+..|
T Consensus       117 --a~SVtVVDl~~~kvv~ei~~P  137 (342)
T PF06433_consen  117 --ATSVTVVDLAAKKVVGEIDTP  137 (342)
T ss_dssp             --SEEEEEEETTTTEEEEEEEGT
T ss_pred             --CCeEEEEECCCCceeeeecCC
Confidence              346777788666776666544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.23  E-value=0.77  Score=40.51  Aligned_cols=176  Identities=13%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EE--eecCCccccceEEcCCC-CEEEEeCCCCeEEEc--CC
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NW--KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--EE  122 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~--~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--~~  122 (351)
                      ++...-.++++..++-.|-.+..++.+..++....++. ..  .......- .++.++.. .++++.++...++++  ..
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence            34455679999965567778888887777765444321 11  11112333 56777543 566666665566665  34


Q ss_pred             C--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~  199 (351)
                      +  ....... ..-..++..|+|. +-+.+                  ....|..+|..+.+...-.+...+.|-++++.
T Consensus        97 ~k~~~~i~~~-~eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   97 GKCTARIETK-GENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNN  157 (313)
T ss_pred             CcEEEEeecc-CcceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeeeecC
Confidence            4  3333222 2223456667664 33322                  23567777765443322223334678899987


Q ss_pred             CCCEEEEEecce-eEEeec-CCCCceeEEeccCCCCCCc---eEECCCCCEEEEE
Q 018705          200 NEDFVVVCESWK-RYWLKG-DRAGILDAFIENLPGGPDN---INLAPDGSFWIGL  249 (351)
Q Consensus       200 dg~~lyv~~~~~-~~~i~~-~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwva~  249 (351)
                      +++ ++|.+++. .+.|-. +....+..    +...|.|   |.+|++|+++...
T Consensus       158 ~nd-~Fflt~GlG~v~ILsypsLkpv~s----i~AH~snCicI~f~p~GryfA~G  207 (313)
T KOG1407|consen  158 SND-LFFLTNGLGCVEILSYPSLKPVQS----IKAHPSNCICIEFDPDGRYFATG  207 (313)
T ss_pred             CCC-EEEEecCCceEEEEeccccccccc----cccCCcceEEEEECCCCceEeec
Confidence            777 77766664 444322 22222221    2223444   5789999866554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.21  E-value=1.5  Score=43.63  Aligned_cols=66  Identities=14%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      .-.++++-|++..|.++. +.+++.+|+.+|.. ++........+ .++..++|..|.+.....++.++
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSADKSVIIW   80 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCceeEEEe
Confidence            445789997666666654 56799999988754 44444445677 89999999999877666666666

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.19  E-value=0.19  Score=48.08  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC--eEEEEeecCC----ccccceEEcCCCC-EEEEe
Q 018705           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDS----QSLLGLTTTKDGG-VILCD  111 (351)
Q Consensus        39 ~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g--~~~~~~~~~~----~p~~gl~~d~~G~-L~v~d  111 (351)
                      .+..+..+..|.+  --.++++.....+|++.. |.|-.||....  +.-.-.-.+.    ... ...+.+||+ |+++.
T Consensus       409 harq~~tL~HGEv--VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGG  484 (705)
T KOG0639|consen  409 HARQINTLAHGEV--VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGG  484 (705)
T ss_pred             hHHhhhhhccCcE--EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEecc
Confidence            3444555665544  235566655678888765 45878876221  1111001111    122 445568886 55554


Q ss_pred             CCCCeEEEcC----CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-
Q 018705          112 NEKGLLKVTE----EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-  184 (351)
Q Consensus       112 ~~~gl~~~~~----~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-  184 (351)
                      . ...+.++.    +-  ...+.......+.+++++|-.+-|++-+                 +|.|.+||..++.+.. 
T Consensus       485 e-astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~Vrq  546 (705)
T KOG0639|consen  485 E-ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQ  546 (705)
T ss_pred             c-cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeec
Confidence            4 33444442    22  2222222245667889999988887755                 5789999987543322 


Q ss_pred             eecCccccceEEEcCCCCEEEEEecce--eEE
Q 018705          185 LHEGFYFANGIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       185 ~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~  214 (351)
                      +...-....+|.+++||..||-.-.++  |-|
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcW  578 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCW  578 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence            222233456789999999899877666  655

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.18  E-value=1.2  Score=42.44  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             ccceEEEcCCCCEEEEEecce-eEEeecCC-CCceeEEec-cCC--C-CCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          191 FANGIALSKNEDFVVVCESWK-RYWLKGDR-AGILDAFIE-NLP--G-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~-~~~~~~~~~-~~~--g-~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      ...++.+.+++. +|+....+ .++..+.. ..+...+.. ..+  + ..-.+.+.+++.+|++...             
T Consensus       282 ~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------------  347 (398)
T PLN00033        282 RIQNMGWRADGG-LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------------  347 (398)
T ss_pred             ceeeeeEcCCCC-EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence            446788888887 66654444 45544321 111001211 111  1 1234567788899998643             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEE
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGIL  339 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~  339 (351)
                                              |.+++-.. .|+.-......++. ...+..+.+ .+++.|+..- ++-|.|+
T Consensus       348 ------------------------G~v~~s~D-~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        348 ------------------------GILLRSTD-GGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             ------------------------CcEEEeCC-CCcceeEccccCCC-CcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence                                    33444444 66654433322222 223556664 4588998875 4556554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.15  E-value=1.4  Score=42.58  Aligned_cols=127  Identities=15%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             EEEEEcCC---EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcCCC--eEEecCCCCCccc
Q 018705           66 LYTATRDG---WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTEEG--VEAIVPDASFTND  136 (351)
Q Consensus        66 lyv~~~~g---~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~~g--~~~l~~~~~~~n~  136 (351)
                      .|+....+   ++++++.++++...+....++-. ..++.+||+ |.++....   .+|.++-++  ...+......-..
T Consensus       208 ~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~  286 (425)
T COG0823         208 AYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTS  286 (425)
T ss_pred             EEEEEecCCCceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccC
Confidence            35544333   48888887776655554444444 566778884 43343332   467777544  3333332211112


Q ss_pred             EEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705          137 VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       137 l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      =.++||| .|+|+.+..               +.-.|+++|+++++.+.+.........-.++|||+.+.+..
T Consensus       287 Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         287 PSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             ccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            3577899 466654320               11269999999888777665444333456899999777765

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.08  E-value=1.3  Score=41.80  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             EeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC----CccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecCCC-C
Q 018705           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVPDA-S  132 (351)
Q Consensus        59 ~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~~~-~  132 (351)
                      ++ .++.+|+++.+|.|+.+|+.+++.. |....    .... +-.+..+|++|+++....++.++. +|...+.... .
T Consensus        65 ~~-~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          65 AD-GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             Ee-eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence            44 5899999999999999999888643 32111    1222 333334899999998766899996 7822221111 1


Q ss_pred             --CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          133 --FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       133 --~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                        ...+-++-.++.+|+...                  +|.++.+|.++|+..
T Consensus       142 ~~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~  176 (370)
T COG1520         142 SPYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLK  176 (370)
T ss_pred             CeEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEE
Confidence              111223445777887742                  357888888877653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.03  E-value=0.6  Score=43.14  Aligned_cols=163  Identities=23%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             cEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE--eec------CccccceEEEcCCCCEEEE
Q 018705          136 DVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV--LHE------GFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       136 ~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~------~~~~~ngi~~~~dg~~lyv  206 (351)
                      .+++++|| .+|++++.  |.+      ..-|..+.-|-.||.+|-+.+.  ...      ....++-.+++.||+++||
T Consensus        40 ~~~~spdgk~~y~a~T~--~sR------~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETF--YSR------GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV  111 (342)
T ss_dssp             EEEE-TTSSEEEEEEEE--EEE------TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred             ceeECCCCCEEEEEEEE--Eec------cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEE
Confidence            37789998 57776653  111      0112223347788988754322  221      1346778999999999999


Q ss_pred             Eecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCC
Q 018705          207 CESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  284 (351)
Q Consensus       207 ~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
                      .+..-  ...+.+...+++-..+ ..|| --.++-..+.++..-|..+.                               
T Consensus       112 ~N~TPa~SVtVVDl~~~kvv~ei-~~PG-C~~iyP~~~~~F~~lC~DGs-------------------------------  158 (342)
T PF06433_consen  112 QNFTPATSVTVVDLAAKKVVGEI-DTPG-CWLIYPSGNRGFSMLCGDGS-------------------------------  158 (342)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEE-EGTS-EEEEEEEETTEEEEEETTSC-------------------------------
T ss_pred             EccCCCCeEEEEECCCCceeeee-cCCC-EEEEEecCCCceEEEecCCc-------------------------------
Confidence            88765  4444443333332222 2333 11122222233443333221                               


Q ss_pred             CCCceEEEEEECCCCeEEEEE---ECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCCCCC
Q 018705          285 SDAGARVVKVDGNDGKIIRDF---NDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       285 ~~~~~~v~~~~~~~g~~~~~~---~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                          -..+.+|. +||....-   -+++..+ -..+.... .++++|+.|+ .+.++-+++.+.+|
T Consensus       159 ----l~~v~Ld~-~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  159 ----LLTVTLDA-DGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSA  217 (342)
T ss_dssp             ----EEEEEETS-TSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSE
T ss_pred             ----eEEEEECC-CCCEeEeeccccCCCCcc-cccccceECCCCeEEEEec-CCEEEEEeccCCcc
Confidence                13566777 78764321   1233221 12333333 3578998888 67799998888765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=96.02  E-value=0.46  Score=44.24  Aligned_cols=92  Identities=12%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEcCCC-eE-------------------EecCCCCCcccEEEccCCcEEEEeCCC
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VE-------------------AIVPDASFTNDVIAASDGTLYFTVAST  152 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~~-------------------~l~~~~~~~n~l~~d~dG~ly~t~~~~  152 (351)
                      ...+ +++|+++|+|..+-...|.+.+++.+ ..                   .+......+.+++..+|+++.++.+. 
T Consensus        66 ~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~-  143 (434)
T KOG1009|consen   66 RAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV-  143 (434)
T ss_pred             ceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec-
Confidence            3467 99999999999877667766665321 10                   11111156888888898887776654 


Q ss_pred             ccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCC
Q 018705          153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNED  202 (351)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~  202 (351)
                                      ++.++.||...|++.... +...+++|++++|-.+
T Consensus       144 ----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  144 ----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             ----------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                            456888888878765543 4567899999999775

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=1.5  Score=43.07  Aligned_cols=81  Identities=11%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             CCccccccCCCCCCCc--Cc-cCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccc
Q 018705           23 SVSSLASLLSISKESS--SM-KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLG   98 (351)
Q Consensus        23 ~~~~~~~~~~~p~~~~--~l-~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~g   98 (351)
                      -|||..+..++|.+++  .. +.+-.+..|.-..-.+|.+++.+..|-.|..+|.+..|...+|+ ++++... +... .
T Consensus       369 niDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~-~  446 (733)
T KOG0650|consen  369 NIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIR-S  446 (733)
T ss_pred             cCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeE-E
Confidence            4888886666666442  11 11223333433446789999876777778889977777766774 3343222 2233 5


Q ss_pred             eEEcCCC
Q 018705           99 LTTTKDG  105 (351)
Q Consensus        99 l~~d~~G  105 (351)
                      +++.+.+
T Consensus       447 vaw~P~~  453 (733)
T KOG0650|consen  447 VAWNPLS  453 (733)
T ss_pred             EEecCCC
Confidence            6666544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.93  E-value=2  Score=42.71  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecC-----Ccc-------ccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEecC
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHID-----SQS-------LLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAIVP  129 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-----~~p-------~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l~~  129 (351)
                      ++.+|+++.++.|+.+|.++|+.. |....     ..+       ..++++ .++++|+++....++.++. +|......
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~l-W~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKEL-WKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCcee-eEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            789999999999999999898753 22111     011       113444 2578999988888999995 77332221


Q ss_pred             CC---CCcccEEE---ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          130 DA---SFTNDVIA---ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       130 ~~---~~~n~l~~---d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      ..   .....+.-   -.+|.+|+...+..+            ...|.|+-+|.++|+..-
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence            11   00001111   125678887653211            125789999999887644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.87  E-value=0.35  Score=45.61  Aligned_cols=177  Identities=15%  Similarity=0.234  Sum_probs=93.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-eEEecCC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-VEAIVPD  130 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~~~l~~~  130 (351)
                      .++++-.....+|.+..|..|-.|+.+.-.. +.+...+.-.. +|..-..+++.-+-...+..++++  +. ..++...
T Consensus       248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~-~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~  326 (479)
T KOG0299|consen  248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL-GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG  326 (479)
T ss_pred             eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee-eechhcccceEEeccccceeEEEeccccceeeeeCC
Confidence            4566653446677777777777776532211 11111112222 343334444443332344455552  33 3333333


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE---EeecC-------cc---ccceEEE
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEG-------FY---FANGIAL  197 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~-------~~---~~ngi~~  197 (351)
                      ..++..+++-.+-. |++-                 ..+|.|..|+...++.-   .++.+       ..   ..+++++
T Consensus       327 ~~sidcv~~In~~H-fvsG-----------------SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~  388 (479)
T KOG0299|consen  327 EGSIDCVAFINDEH-FVSG-----------------SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV  388 (479)
T ss_pred             CCCeeeEEEecccc-eeec-----------------cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence            34666666443332 2222                 23567777765543321   11111       11   3567888


Q ss_pred             cCCCCEEEEEecce---eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-EEEEEec
Q 018705          198 SKNEDFVVVCESWK---RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-lwva~~~  251 (351)
                      -+..+ |+.+.++.   |+|.........+++.+ .+.|+.+.+++..+|. +|++.+.
T Consensus       389 i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  389 IPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             cccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            88887 66665544   89977554445554433 4667888899999997 8888764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.83  E-value=0.25  Score=49.41  Aligned_cols=143  Identities=22%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC---eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG---VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g---~~~l~~  129 (351)
                      -++.++|++..|-++.-|..+-.+-.++=++..-.-...-|...|.+.+|+.|.++-+...-++++-  =|   ...++.
T Consensus       512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH  591 (888)
T KOG0306|consen  512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH  591 (888)
T ss_pred             EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence            4778887777778888887666555544444221111122433777779999999888877888882  34   333443


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEeecCccccceEEEcCCCCEEEEEe
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      + ..+..+.+-|+-.++||.+-                 ++.+-+||...= .++.+.........++.+|+|.+++-++
T Consensus       592 d-DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  592 D-DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             c-CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence            3 56788888898889998864                 466888876532 2333344455677889999998554454


Q ss_pred             cce--eEEe
Q 018705          209 SWK--RYWL  215 (351)
Q Consensus       209 ~~~--~~~i  215 (351)
                      .+.  |+|=
T Consensus       654 hD~sIRlwE  662 (888)
T KOG0306|consen  654 HDKSIRLWE  662 (888)
T ss_pred             CCceeEeee
Confidence            444  6663

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=2.7  Score=43.31  Aligned_cols=143  Identities=13%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l  127 (351)
                      ..-+++|.|..-.+.++.+.|.|..||-+-+.. .+|....+... |++|.+.+-|||+....-.++++.  +.  ..++
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            456899998888888899999999998755543 34444555556 999999999999876666677763  22  2333


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv  206 (351)
                      .....++..+.+.+.= =||-..+                .+-.|..||-.+++...+. ..-.+..+..|+|.++ +.|
T Consensus        90 ~GHlDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIV  151 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIV  151 (1202)
T ss_pred             ccccceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEE
Confidence            3333444444444432 2221111                1235666665555443333 3345666778999887 555


Q ss_pred             E-ecce--eEE
Q 018705          207 C-ESWK--RYW  214 (351)
Q Consensus       207 ~-~~~~--~~~  214 (351)
                      + +.+.  |.|
T Consensus       152 SaSLDQTVRVW  162 (1202)
T KOG0292|consen  152 SASLDQTVRVW  162 (1202)
T ss_pred             EecccceEEEE
Confidence            4 4444  776

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.81  E-value=2  Score=42.77  Aligned_cols=133  Identities=19%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCCCCCcccEE
Q 018705           62 SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~~~~~n~l~  138 (351)
                      +++++.+|..|..|.++...+... ..+.....+.. ++..+.++.+. +.+.....++++.|  ...+......+..++
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~i-SgSWD~TakvW~~~~l~~~l~gH~asVWAv~  147 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLI-SGSWDSTAKVWRIGELVYSLQGHTASVWAVA  147 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceE-ecccccceEEecchhhhcccCCcchheeeee
Confidence            456788888888888887644332 12233445677 88888888844 44445677778644  444433334555666


Q ss_pred             EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce--eEEee
Q 018705          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLK  216 (351)
Q Consensus       139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~  216 (351)
                      .=+++ .|+|-+.                 +..|..|..+ ...+.+........|+++-+++.++ -++.++  ++|-.
T Consensus       148 ~l~e~-~~vTgsa-----------------DKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  148 SLPEN-TYVTGSA-----------------DKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL  207 (745)
T ss_pred             ecCCC-cEEeccC-----------------cceeeeccCC-chhhhhccchhheeeeEEecCCCeE-eecCCceEEEEec
Confidence            66666 7888765                 2346666543 2334444445567788888887633 333333  66643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.78  E-value=1.7  Score=41.25  Aligned_cols=237  Identities=15%  Similarity=0.106  Sum_probs=118.4

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEcC--CC-eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE--EG-VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~--~g-~~~l~~~  130 (351)
                      ++++++++..+.+|..+..|..|+.++.+- +.+....+... +++|- ...+||.+.....+-..+-  -. ++++...
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            678885555555666777788998877643 34444445566 88885 3348998876654333332  22 4444332


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ...+-+|.+-..++.. |....              ..+-+||++ |+  +.+.+. .+..++.++++=.+.+ +...+.
T Consensus       286 qd~v~~IdaL~reR~v-tVGgr--------------DrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~H-fvsGSd  346 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCV-TVGGR--------------DRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDEH-FVSGSD  346 (479)
T ss_pred             ccceeeechhcccceE-Eeccc--------------cceeEEEec-cc--cceeeeeCCCCCeeeEEEecccc-eeeccC
Confidence            2334444433334322 22110              012256666 22  333333 3345788999877765 434333


Q ss_pred             ce--eEEeecCCCCceeEEeccCCCCCCceEEC---CCCCEEEEEecC--CchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLA---PDGSFWIGLIKM--NQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d---~~G~lwva~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      ++  .+|-.-   ....+|...   .+.++.-+   -+++.|++....  .+.++   +.                    
T Consensus       347 nG~IaLWs~~---KKkplf~~~---~AHgv~~~~~~~~~~~Witsla~i~~sdL~---as--------------------  397 (479)
T KOG0299|consen  347 NGSIALWSLL---KKKPLFTSR---LAHGVIPELDPVNGNFWITSLAVIPGSDLL---AS--------------------  397 (479)
T ss_pred             CceEEEeeec---ccCceeEee---ccccccCCccccccccceeeeEecccCceE---Ee--------------------
Confidence            33  455321   122333322   12222222   234578886431  11111   00                    


Q ss_pred             CCCCCce--EEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          283 MGSDAGA--RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       283 ~~~~~~~--~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                        +.-.|  .+.++.+ +-+.+.-+..  -....+++++++.  +..+++|.....+++|.....+++
T Consensus       398 --GS~~G~vrLW~i~~-g~r~i~~l~~--ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~  460 (479)
T KOG0299|consen  398 --GSWSGCVRLWKIED-GLRAINLLYS--LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGK  460 (479)
T ss_pred             --cCCCCceEEEEecC-Cccccceeee--cccccEEEEEEEccCCCEEEEecccccccceeeEeeccc
Confidence              11111  3444454 4333332221  0123467777743  446999999999999998776654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.69  E-value=1  Score=42.50  Aligned_cols=131  Identities=14%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEE--c--CCCC---EEEEeCC----C--CeEEEcC-CC-eEEecC
Q 018705           65 ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT--T--KDGG---VILCDNE----K--GLLKVTE-EG-VEAIVP  129 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~--d--~~G~---L~v~d~~----~--gl~~~~~-~g-~~~l~~  129 (351)
                      ++..+..+++++.+|.+...++.+  ..++++ .+.+  +  -.|+   |.++...    +  .++++++ +| ++.+.+
T Consensus        70 lIigTdK~~GL~VYdL~Gk~lq~~--~~Gr~N-NVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDLDGKELQSL--PVGRPN-NVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEETTS-EEEEE---SS-EE-EEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcCCCcEEEee--cCCCcc-eeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            333445678899999954444443  234443 3222  1  1232   3344322    1  3677775 56 655432


Q ss_pred             C-------CCCcccEEEc--c-CCcEEEEeCCCccCCcccccccccccCCceEEEE---eCCCCeEEE----eecCcccc
Q 018705          130 D-------ASFTNDVIAA--S-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY---DPKLKETTV----LHEGFYFA  192 (351)
Q Consensus       130 ~-------~~~~n~l~~d--~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~~~~~----~~~~~~~~  192 (351)
                      .       ...++++|.-  + +|.+|+-...                +.|.+.+|   +...+.+..    -.....-+
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~  210 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVGSQP  210 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-E
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcc
Confidence            1       1457788863  3 4666654322                13443333   233343211    11223457


Q ss_pred             ceEEEcCCCCEEEEEecceeEE
Q 018705          193 NGIALSKNEDFVVVCESWKRYW  214 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~~~~  214 (351)
                      .|++.+....+||++|...-+|
T Consensus       211 EGCVVDDe~g~LYvgEE~~GIW  232 (381)
T PF02333_consen  211 EGCVVDDETGRLYVGEEDVGIW  232 (381)
T ss_dssp             EEEEEETTTTEEEEEETTTEEE
T ss_pred             eEEEEecccCCEEEecCccEEE
Confidence            8999998888999999877333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.57  E-value=0.58  Score=46.77  Aligned_cols=143  Identities=16%  Similarity=0.249  Sum_probs=90.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEec
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~  128 (351)
                      -.+++++|++..|++....+-+..|...+|++. .|......|...+++|+.|.|.......+.++++.  .+  ...+.
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fk  144 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFK  144 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEec
Confidence            347788888888999888887777787788653 33332333433899999997776666668888874  44  45555


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCEEEE
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      .....+..+.+.|+-+.|+=               ..+..++.+..||..++..  ..+....+...++++++|+..++.
T Consensus       145 G~gGvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  145 GHGGVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             CCCceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE
Confidence            53355666777766432211               1223467788888765443  112233456778999999885554


Q ss_pred             Eecce
Q 018705          207 CESWK  211 (351)
Q Consensus       207 ~~~~~  211 (351)
                      ...+.
T Consensus       210 ~~RDk  214 (775)
T KOG0319|consen  210 VGRDK  214 (775)
T ss_pred             eccCc
Confidence            44444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.56  E-value=0.54  Score=43.89  Aligned_cols=122  Identities=11%  Similarity=0.094  Sum_probs=73.4

Q ss_pred             EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC--C-C-eEEecC-CC---CCcccEEE
Q 018705           69 ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE--E-G-VEAIVP-DA---SFTNDVIA  139 (351)
Q Consensus        69 ~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~--~-g-~~~l~~-~~---~~~n~l~~  139 (351)
                      |-.|+.|..||........-...++... .+....+| .|..+. .+..+.+.+  + + ...+.. +.   ...+-+++
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsss-RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSS-RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             cccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeec-CCCceeeeecccccEEEEeeccccccccccceeEE
Confidence            4457778888865554443334455655 77777777 455553 444444432  2 2 333322 22   45677889


Q ss_pred             ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc---ccceEEEcCCCCEEEEEec
Q 018705          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---FANGIALSKNEDFVVVCES  209 (351)
Q Consensus       140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngi~~~~dg~~lyv~~~  209 (351)
                      +|+|..-.+-++                 +|+|+.|+..+++++.....-.   ..+.+++++-|..|.-++-
T Consensus       396 Spd~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  396 SPDGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             CCCCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            999865554444                 6899999999998876654322   2356778887765544443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.49  E-value=0.4  Score=44.07  Aligned_cols=178  Identities=16%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             CCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--
Q 018705           49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--  123 (351)
                      |...|-.++|-+|.. ..+..|..||.|..||..+.. ...+....+-.. ||+++....+.+++..  .++++. +|  
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdDK--tvK~wk~~~~p  140 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDDK--TVKQWKIDGPP  140 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCCc--ceeeeeccCCc
Confidence            444556677777544 457788999999999985432 334444445566 9999986567776643  344443 44  


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeecCccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      .+++... ....+|.-...+.++.|...                   .+-.||..-.. ++.+.-+......+.++|-+.
T Consensus       141 ~~tilg~-s~~~gIdh~~~~~~FaTcGe-------------------~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET  200 (433)
T KOG0268|consen  141 LHTILGK-SVYLGIDHHRKNSVFATCGE-------------------QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET  200 (433)
T ss_pred             ceeeecc-ccccccccccccccccccCc-------------------eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence            3333222 22233332223344444332                   35555543111 122222333335677778776


Q ss_pred             EEEEEe-cceeEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          203 FVVVCE-SWKRYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       203 ~lyv~~-~~~~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .+..+. +++.+.+-+...+. ....+  +..-++.|++.+++..+++...
T Consensus       201 sILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             hheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccc
Confidence            454433 33322222211111 11111  2234688899988877776543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.43  E-value=0.79  Score=42.19  Aligned_cols=160  Identities=14%  Similarity=0.162  Sum_probs=91.3

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--  123 (351)
                      |+-.+-.++++-|.++.+.....|..|..|+.++|- +.++........ -+++..||.|+.+-.....++++.  ++  
T Consensus       191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~  269 (406)
T KOG0295|consen  191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQC  269 (406)
T ss_pred             CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchh
Confidence            334455688888777777777788889999987773 344443334445 677788999988766666667763  33  


Q ss_pred             eEEecCCCCCcccEEEccCCc---EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcC
Q 018705          124 VEAIVPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSK  199 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~---ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~  199 (351)
                      +..+.....-+..+++.|.-.   +....++..     -..-+..+..++.+-.||..++..-. +........|++|+|
T Consensus       270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~-----~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p  344 (406)
T KOG0295|consen  270 KAELREHEHPVECIAWAPESSYPSISEATGSTN-----GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP  344 (406)
T ss_pred             hhhhhccccceEEEEecccccCcchhhccCCCC-----CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence            233332222333444443321   111111000     00011123345678888988886433 334455677899999


Q ss_pred             CCCEEEEEecce--eEE
Q 018705          200 NEDFVVVCESWK--RYW  214 (351)
Q Consensus       200 dg~~lyv~~~~~--~~~  214 (351)
                      .|++|.-+..++  |.|
T Consensus       345 ~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  345 GGKYILSCADDKTLRVW  361 (406)
T ss_pred             CCeEEEEEecCCcEEEE
Confidence            999766544444  555

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.43  E-value=2.5  Score=40.26  Aligned_cols=142  Identities=13%  Similarity=0.120  Sum_probs=79.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~  128 (351)
                      .-.+++|+.++..|-+|..+|.+..|+...+....+....+ |.+.+...++|+.+++....+...++ . .|  .+.+.
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            45688998555667789999988888874444444433334 44488999999877665555555554 3 56  33332


Q ss_pred             CCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCce--EEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          129 PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      -. ..| .+.++-.+ .=+++.+.                 .+.  |++++.++ -+..+...-...|+|.++|.|..|-
T Consensus       316 ~~-s~~-~lDVdW~~~~~F~ts~t-----------------d~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLa  375 (524)
T KOG0273|consen  316 FH-SAP-ALDVDWQSNDEFATSST-----------------DGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLA  375 (524)
T ss_pred             ec-cCC-ccceEEecCceEeecCC-----------------CceEEEEEecCCC-cceeeecccCceEEEEECCCCceEE
Confidence            22 222 22233211 11222211                 344  45555432 2333344445678899999998544


Q ss_pred             EEecce--eEEe
Q 018705          206 VCESWK--RYWL  215 (351)
Q Consensus       206 v~~~~~--~~~i  215 (351)
                      -++.+.  ++|-
T Consensus       376 S~SdD~TlkiWs  387 (524)
T KOG0273|consen  376 SCSDDGTLKIWS  387 (524)
T ss_pred             EecCCCeeEeee
Confidence            444444  8885

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.42  E-value=1.7  Score=41.23  Aligned_cols=204  Identities=14%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      +... .++-++.|.+.++..-.|-+.++  .+|  ..++......+..|.+..||..+||.+.                 
T Consensus        82 g~v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-----------------  143 (476)
T KOG0646|consen   82 GPVH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-----------------  143 (476)
T ss_pred             ccee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-----------------
Confidence            3345 78888999877776445545555  366  5555444567888999999998888754                 


Q ss_pred             CceEEEEeC------CC-CeE---EEeecCccccceEEEcCCC--CEEEEEecce--eEEeecCCCCceeEEeccCCCCC
Q 018705          169 YGQLRKYDP------KL-KET---TVLHEGFYFANGIALSKNE--DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGP  234 (351)
Q Consensus       169 ~g~l~~~d~------~~-~~~---~~~~~~~~~~ngi~~~~dg--~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~p  234 (351)
                      +|.|..|..      .. +.+   ..+.+.--...-+.++..|  .+||-++.++  ++|--  ..+..-.-+ ..|..+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl--S~g~LLlti-~fp~si  220 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL--SLGVLLLTI-TFPSSI  220 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe--ccceeeEEE-ecCCcc
Confidence            445554421      10 011   1111110001112222221  2466666565  44421  122221111 234456


Q ss_pred             CceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCce-EEEEEECCCCeEEEEEECCCCCc
Q 018705          235 DNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA-RVVKVDGNDGKIIRDFNDPDATY  312 (351)
Q Consensus       235 d~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~g~~~~~~~~~~g~~  312 (351)
                      ..+++|+.++ +|+|+..+....+.+...           +.          .+.+ ..-.+++ .+..+..+.+..+. 
T Consensus       221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~-----------~~----------~~~~v~~k~~~~-~~t~~~~~~Gh~~~-  277 (476)
T KOG0646|consen  221 KAVALDPAERVVYIGTEEGKIFQNLLFKL-----------SG----------QSAGVNQKGRHE-ENTQINVLVGHENE-  277 (476)
T ss_pred             eeEEEcccccEEEecCCcceEEeeehhcC-----------Cc----------cccccccccccc-ccceeeeeccccCC-
Confidence            7788998774 888876554322211000           00          0000 1123355 66667777665542 


Q ss_pred             ccceeEEEE-ECCEEEEEecCCCeEEEEeC
Q 018705          313 ISFVTSAAE-FDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       313 ~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~  341 (351)
                       ..++.+.. .+|.|.+.....+-+-+.+.
T Consensus       278 -~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  278 -SAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence             46777764 47787777776666766663

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.42  E-value=1.1  Score=45.28  Aligned_cols=95  Identities=11%  Similarity=0.098  Sum_probs=63.6

Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceE
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l  172 (351)
                      .|...+++-|.-+.. ...+|++.   +. +.++... .++.+|++.| |.+.+++-+-                 +|.+
T Consensus       374 DlSWSKn~fLLSSSM-DKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDryFiSGSL-----------------D~Kv  434 (712)
T KOG0283|consen  374 DLSWSKNNFLLSSSM-DKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRYFISGSL-----------------DGKV  434 (712)
T ss_pred             ecccccCCeeEeccc-cccEEeecCCCcceeeEEecC-CeeEEEEecccCCCcEeeccc-----------------ccce
Confidence            455555555554443 45666662   33 6666655 6899999999 5678887654                 4666


Q ss_pred             EEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       173 ~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ..|+-...++..+.+.-.....+++.|||+..+|+...+
T Consensus       435 RiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             EEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEecc
Confidence            666655456655544445567799999999888888777

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.29  E-value=0.4  Score=49.65  Aligned_cols=95  Identities=18%  Similarity=0.108  Sum_probs=66.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC---C-eEEec
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE---G-VEAIV  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~---g-~~~l~  128 (351)
                      --+++|+|++-.+-....|+.|..|+..+.+. +++....+.+- |+.+||-|+.+.+....+.+++++.   | .+.+.
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            34788997444445566799999999766533 44455556677 9999999999998888888888752   3 33333


Q ss_pred             CCC------CCcccEEEccCCcEEEEe
Q 018705          129 PDA------SFTNDVIAASDGTLYFTV  149 (351)
Q Consensus       129 ~~~------~~~n~l~~d~dG~ly~t~  149 (351)
                      ...      .+..-+..+|||.+..+.
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecch
Confidence            221      456667788999766554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.28  E-value=0.53  Score=43.87  Aligned_cols=177  Identities=16%  Similarity=0.136  Sum_probs=86.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEE-cCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFI-LHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d-~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~  129 (351)
                      ..+++..++..+-++..||.+..|+ |.....-.......... .|.|.+||.+.+.-... ..+++  .+|  +....+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            4566664445666676777666666 42222111122334566 89999999888776655 44444  255  333321


Q ss_pred             CC--CCcccEEEccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeC------CCCeEEEeecCccccceEEEc
Q 018705          130 DA--SFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP------KLKETTVLHEGFYFANGIALS  198 (351)
Q Consensus       130 ~~--~~~n~l~~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~------~~~~~~~~~~~~~~~ngi~~~  198 (351)
                      ..  .....+.+..|+   .+++.....               +.+++..++.      +-.+.+...........+++|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            11  222223333333   566665431               1222322221      112222333344456678999


Q ss_pred             CCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705          199 KNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       199 ~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      .||+++-++...+ ..-+...+......+.....+...++.+.+|-+.-..
T Consensus       291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  291 DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            9999888877666 2111111222222222112234455666666554444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.23  E-value=0.56  Score=43.18  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecc
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      .-+..+...+||..|++.+.                .+..+..||+++++...+. .++....-+.+||||+.++.+..+
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence            45667778889999988763                1346999999998876665 344444457899999988777777


Q ss_pred             e--eEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705          211 K--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  244 (351)
Q Consensus       211 ~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~  244 (351)
                      .  ++|-... .-..+... -.+|....-+.+++|+
T Consensus       260 avfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  260 AVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGS  293 (445)
T ss_pred             ceeeeehhcc-cceeccee-ccCCceeeeeecCCCC
Confidence            6  6663211 11111111 1233444556778886

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=1.9  Score=39.18  Aligned_cols=62  Identities=11%  Similarity=0.009  Sum_probs=34.4

Q ss_pred             cccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          190 YFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ..|--++++|+|+.|-++.-...-|+...+....+.+-+-..+-..+|.++++|++.++++.
T Consensus       332 ~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  332 SEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            45667899999995544433323333322211122221112234567899999998887764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.12  E-value=2.6  Score=42.36  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=59.5

Q ss_pred             CCc-eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCE--EEEeCCCCeEEEcC--CC---
Q 018705           53 HPE-DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGV--ILCDNEKGLLKVTE--EG---  123 (351)
Q Consensus        53 ~pe-~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L--~v~d~~~gl~~~~~--~g---  123 (351)
                      +|. -++++|.++.+-++..+|++..||-..+...+ +...++... .+.|.++-+.  .++....+.++++.  ++   
T Consensus       106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc  184 (775)
T KOG0319|consen  106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC  184 (775)
T ss_pred             CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchH
Confidence            444 45888777777788999999999986665443 333455566 7888776543  33333345555542  23   


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeC
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVA  150 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~  150 (351)
                      ..++........++++.+|+.-.++.+
T Consensus       185 l~~~~~H~S~vtsL~~~~d~~~~ls~~  211 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSEDSLELLSVG  211 (775)
T ss_pred             HHHHHhhhhheeeeeeccCCceEEEec
Confidence            112222236788889988886555544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=95.04  E-value=2.6  Score=38.25  Aligned_cols=54  Identities=7%  Similarity=0.022  Sum_probs=32.0

Q ss_pred             ceEEcCCCCEEEEeC-CCCeEEEcC-C-C-eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705           98 GLTTTKDGGVILCDN-EKGLLKVTE-E-G-VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus        98 gl~~d~~G~L~v~d~-~~gl~~~~~-~-g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      .+.|++-|.+....- .+.++.++- + + .+.+.....-+.+++.++||+..+|.+.
T Consensus        28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~   85 (405)
T KOG1273|consen   28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR   85 (405)
T ss_pred             eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC
Confidence            566666665443332 233444442 2 2 3333333356788999999999998765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.02  E-value=0.17  Score=45.54  Aligned_cols=133  Identities=17%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE----EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEe--
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL----VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAI--  127 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~----~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l--  127 (351)
                      .++.|.|.+..|..+..|+.|-.+|...-..    +.+.  ...|...|.|.|.|....+....-+.++.. +-.+-+  
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            4677887777777788899888888633222    2221  123333899999997554443444444432 111222  


Q ss_pred             --cCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Ee--ecCccccceEEEcCC
Q 018705          128 --VPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VL--HEGFYFANGIALSKN  200 (351)
Q Consensus       128 --~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~--~~~~~~~ngi~~~~d  200 (351)
                        ++..  ..++++-.++.|++|+|.+.                 +|.|-.||.-+++-. .+  +.+........|+++
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence              1211  67888999999999999865                 577888886554421 11  122333445678888


Q ss_pred             CCEEEE
Q 018705          201 EDFVVV  206 (351)
Q Consensus       201 g~~lyv  206 (351)
                      |+++.-
T Consensus       317 ~kyiLs  322 (430)
T KOG0640|consen  317 GKYILS  322 (430)
T ss_pred             CeEEee
Confidence            874433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=94.88  E-value=0.51  Score=45.33  Aligned_cols=120  Identities=17%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE--EE---eec-CCccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV--NW---KHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~--~~---~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-  121 (351)
                      +....|..-+|+|++..+-.+..||.|..|+...-.+.  ..   .+. +.... .|.|..+|+...+-...+.++++. 
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It-si~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT-SISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee-EEEeccccchhhhccCCCceeeeec
Confidence            44556778899977667677889999999985221111  11   122 23445 899999999888877777777763 


Q ss_pred             CC-eEEe---cCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705          122 EG-VEAI---VPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (351)
Q Consensus       122 ~g-~~~l---~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  180 (351)
                      .. .+.+   ..-.  .--.+.+++||..|.+|-++..           .+...|.|+.||+.+-
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~-----------~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP-----------NGMTAGTLFFFDRMTL  447 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEeccccc-----------CCCCCceEEEEeccce
Confidence            22 2221   1111  2334678999999999876521           1123457888887643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.88  E-value=0.71  Score=47.93  Aligned_cols=100  Identities=11%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCC----------C---eEEE------EeecCCccccceEEcCCCCEEEEe
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHN----------E---TLVN------WKHIDSQSLLGLTTTKDGGVILCD  111 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~----------g---~~~~------~~~~~~~p~~gl~~d~~G~L~v~d  111 (351)
                      ...-.|+.|.+++..|+.|+.|.-|+.|....          |   .++.      +....+... .+..++++.+.+.-
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV  147 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence            34456778998888899999998777776542          1   0111      223334566 78889999888876


Q ss_pred             CCCCeEEEc-C-CC--eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705          112 NEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       112 ~~~gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      +...-+.++ . +.  .+++......+-++.+||-|+.+.+.+.
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd  191 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD  191 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC
Confidence            555444444 2 33  5666665678999999999987777654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.83  E-value=3.5  Score=38.58  Aligned_cols=82  Identities=9%  Similarity=0.099  Sum_probs=45.1

Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-eeEEeecCCCCceeEEeccCCC-CCCceEECCCCCEE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-KRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSFW  246 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~lw  246 (351)
                      +..|..||..||+...-.+.-.....+.|+.||. ++++... +++++-++..++.........| -|....+-.+|.+.
T Consensus       153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            5579999998887654444223344688999998 5554443 3666656555443211111112 23334455677755


Q ss_pred             EEEec
Q 018705          247 IGLIK  251 (351)
Q Consensus       247 va~~~  251 (351)
                      .+.+.
T Consensus       232 tTGfs  236 (472)
T KOG0303|consen  232 TTGFS  236 (472)
T ss_pred             eeccc
Confidence            55443

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.73  E-value=0.051  Score=47.23  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             CCcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--------EEEeecCC-ccccceEEcCCCC
Q 018705           36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL--------VNWKHIDS-QSLLGLTTTKDGG  106 (351)
Q Consensus        36 ~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--------~~~~~~~~-~p~~gl~~d~~G~  106 (351)
                      .|+-....++|..+....=..|+++ ..|.||.-..+|.++|...-+...        +.+...+- ... .+.++++|.
T Consensus        65 ~~~~~~~~~~Ig~g~W~~F~~i~~d-~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~Gv  142 (229)
T PF14517_consen   65 GNTWDSGSKQIGDGGWNSFKFIFFD-PTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGV  142 (229)
T ss_dssp             T--HHHH-EEEE-S-GGG-SEEEE--TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-
T ss_pred             cccccccCcccccCcccceeEEEec-CCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCcc
Confidence            3344455678888733333499999 689999989999998886422211        22212222 234 688899999


Q ss_pred             EEEEeCCCCeEEEc-CCC-------eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705          107 VILCDNEKGLLKVT-EEG-------VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (351)
Q Consensus       107 L~v~d~~~gl~~~~-~~g-------~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (351)
                      ||+.+..+.+++.. +++       .+.+...  -..+--|...++|.||..++                  +|.|||+.
T Consensus       143 LY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~  204 (229)
T PF14517_consen  143 LYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGR  204 (229)
T ss_dssp             EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES
T ss_pred             EEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccC
Confidence            99999666577774 322       1222211  13466688889999998754                  47899887


Q ss_pred             CCC
Q 018705          177 PKL  179 (351)
Q Consensus       177 ~~~  179 (351)
                      +.+
T Consensus       205 ~p~  207 (229)
T PF14517_consen  205 PPQ  207 (229)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.69  E-value=2.9  Score=37.10  Aligned_cols=97  Identities=8%  Similarity=0.044  Sum_probs=57.3

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      .||++-+.++.+|.|.++-......-++  .+|  +-++......+..+.+|.+-...+|-+                 .
T Consensus        10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-----------------A   72 (327)
T KOG0643|consen   10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-----------------A   72 (327)
T ss_pred             ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-----------------c
Confidence            4666578888999877655444333333  244  333333224455555555444444433                 3


Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      +..+-.||-++|+.....+......++.|+.+|+.+.+
T Consensus        73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~  110 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA  110 (327)
T ss_pred             cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence            45677888888876655555555678889999984433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=6.3  Score=40.83  Aligned_cols=129  Identities=12%  Similarity=0.258  Sum_probs=80.7

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCCeEEe
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAI  127 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g~~~l  127 (351)
                      |....-.++.++|..+.+.....|+.|..||.... .++.+.....+=. -++..|..+||.+.+.+|+..+--+     
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkle-----  321 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLE-----  321 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEc-----
Confidence            45566779999987777778888999999997433 2456666666666 7888899999999888776554311     


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cC----ccccceEEEcCCC
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EG----FYFANGIALSKNE  201 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~----~~~~ngi~~~~dg  201 (351)
                          .-.-..++..++-+|+-+.                    .|..||..+.+-..+.  ..    ...|..+..+|..
T Consensus       322 ----RErpa~~v~~n~LfYvkd~--------------------~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae  377 (1202)
T KOG0292|consen  322 ----RERPAYAVNGNGLFYVKDR--------------------FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE  377 (1202)
T ss_pred             ----ccCceEEEcCCEEEEEccc--------------------eEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence                0122335555555666532                    4666665542222221  11    1235567777877


Q ss_pred             CEEEEE
Q 018705          202 DFVVVC  207 (351)
Q Consensus       202 ~~lyv~  207 (351)
                      +.+.++
T Consensus       378 ~~vlic  383 (1202)
T KOG0292|consen  378 NAVLIC  383 (1202)
T ss_pred             CeEEEE
Confidence            755555

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=94.65  E-value=2.9  Score=36.92  Aligned_cols=150  Identities=19%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             eEEEEeCCCCeEEEeec-------CccccceEEEcCCC---C-EEEEEecce---eEEeecCCCCc-----eeEEeccCC
Q 018705          171 QLRKYDPKLKETTVLHE-------GFYFANGIALSKNE---D-FVVVCESWK---RYWLKGDRAGI-----LDAFIENLP  231 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~-------~~~~~ngi~~~~dg---~-~lyv~~~~~---~~~i~~~~~~~-----~~~~~~~~~  231 (351)
                      .+|.+||+++.++.+.+       ..+.+.|+++..+.   . +++|+.-.+   .|.+.+...|.     ++-|  .++
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~~  204 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KIP  204 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ecC
Confidence            36777887766655433       35668898886543   3 455555444   56665322222     2222  133


Q ss_pred             CCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCC
Q 018705          232 GGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  310 (351)
Q Consensus       232 g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  310 (351)
                      ....|+..|. -|.||++.......-+..-......++++.++...-. +   ...-.+.-+.+-| +|+-.-...+ +|
T Consensus       205 tQTEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d~~~-L---tdDvEGltiYy~p-nGkGYL~aSS-QG  278 (364)
T COG4247         205 TQTEGMVADDETGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKDLSY-L---TDDVEGLTIYYGP-NGKGYLLASS-QG  278 (364)
T ss_pred             CcccceeeccccceEEEeeccceeeecccCCCCCCccchhhhhcCchh-h---cccccccEEEEcC-CCcEEEEEec-CC
Confidence            3456776654 4899999754322111111112233444444333110 0   1122345566777 7775433332 33


Q ss_pred             CcccceeEEEEE-CCEEEEEec
Q 018705          311 TYISFVTSAAEF-DGNLYLASL  331 (351)
Q Consensus       311 ~~~~~~~~~~~~-~g~L~ig~~  331 (351)
                      .   ...++... ++.=|+|++
T Consensus       279 n---Ntya~y~ReG~N~YVgsF  297 (364)
T COG4247         279 N---NTYAAYTREGNNDYVGSF  297 (364)
T ss_pred             C---ceEEEEEeeCCCceEEEE
Confidence            2   33444443 456788775

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.63  E-value=5.7  Score=40.14  Aligned_cols=222  Identities=13%  Similarity=0.070  Sum_probs=113.9

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCE--EEEe-------CCCCeEEEcCCC-eEEecCCC
Q 018705           65 ALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGV--ILCD-------NEKGLLKVTEEG-VEAIVPDA  131 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L--~v~d-------~~~gl~~~~~~g-~~~l~~~~  131 (351)
                      .+|+- .+|++.+++.  +..+.....   ...+. ..++.++|+.  |+..       ....|+..+..+ .+.+... 
T Consensus       322 ~~~~v-~~G~l~~~~~--~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-  396 (591)
T PRK13616        322 GLHAL-VDGSLVSVDG--QGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-  396 (591)
T ss_pred             cceEE-ECCeEEEecC--CCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-
Confidence            45543 3788888864  223322211   12344 6777888854  3331       112344444444 3333222 


Q ss_pred             CCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705          132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      .....-.+++|| .||+.....+.      ..+......+.++..+.+.++.+.  ........+.+|+||+++.+...+
T Consensus       397 ~~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g  468 (591)
T PRK13616        397 HSLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG  468 (591)
T ss_pred             CCCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC
Confidence            124445789996 68877532110      001111234567777666565543  111246678999999977765433


Q ss_pred             eeEEe---ecCCCCceeE-----EeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          211 KRYWL---KGDRAGILDA-----FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       211 ~~~~i---~~~~~~~~~~-----~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                       ++++   .....|..++     +...+...+..+..-.++.|.++....                              
T Consensus       469 -~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~------------------------------  517 (591)
T PRK13616        469 -KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP------------------------------  517 (591)
T ss_pred             -EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC------------------------------
Confidence             3333   1111233222     222233333556777788887774321                              


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEe
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP  340 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~  340 (351)
                           ...+.+++. +|.....+  +.+.....+.++....+.+|+++.  +++..+.
T Consensus       518 -----~~~v~~v~v-DG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~--~g~~~l~  565 (591)
T PRK13616        518 -----EHPVWYVNL-DGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDA--RAVLQLP  565 (591)
T ss_pred             -----CCceEEEec-CCcccccc--CCCCccCceEEEecCCceEEEEcC--CceEEec
Confidence                 124677787 77654433  223233445566555678998874  5555444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.62  E-value=2.3  Score=38.20  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             CCccccceEEcCCCCEEEEeCCC-------------------CeEEEc-CCC----eEEecCC--CCCcccEEEccCCcE
Q 018705           92 DSQSLLGLTTTKDGGVILCDNEK-------------------GLLKVT-EEG----VEAIVPD--ASFTNDVIAASDGTL  145 (351)
Q Consensus        92 ~~~p~~gl~~d~~G~L~v~d~~~-------------------gl~~~~-~~g----~~~l~~~--~~~~n~l~~d~dG~l  145 (351)
                      +--|+ -+.+-+||++.+..+++                   .++.++ .+|    +++++..  ...+..+++++||++
T Consensus       161 GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv  239 (366)
T COG3490         161 GIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV  239 (366)
T ss_pred             CcCcc-eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence            34577 78888999877765331                   133333 244    1223211  167888999999999


Q ss_pred             EEEeC
Q 018705          146 YFTVA  150 (351)
Q Consensus       146 y~t~~  150 (351)
                      |+.+.
T Consensus       240 wfgcQ  244 (366)
T COG3490         240 WFGCQ  244 (366)
T ss_pred             EEEEE
Confidence            99885

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.59  E-value=4.5  Score=38.73  Aligned_cols=187  Identities=13%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l  127 (351)
                      .-.+++++|..-.=++.+..-++..++..+-.+ +.+.......+ ++.|-.||+|+.+....|.+++..  ..  ++.+
T Consensus        28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~  106 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL  106 (487)
T ss_pred             cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence            334666665432222222233466666533322 22322233466 888889999998877778777763  21  2333


Q ss_pred             cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEE
Q 018705          128 VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      .......+-+-+.+++ +++++.+.                 +.-+-.||.++..+.. +...-.+..+.+++|....++
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sD-----------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSD-----------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCC-----------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence            2222344555667755 45554432                 2234455666555421 122233455667777665577


Q ss_pred             EEec-ce--eEEeecCCCCceeEEeccCCCCC-CceEECCCCCEEEEEecCCchhhhhh
Q 018705          206 VCES-WK--RYWLKGDRAGILDAFIENLPGGP-DNINLAPDGSFWIGLIKMNQTGVRAI  260 (351)
Q Consensus       206 v~~~-~~--~~~i~~~~~~~~~~~~~~~~g~p-d~i~~d~~G~lwva~~~~~~~~~~~~  260 (351)
                      ++-. ++  |.|-.  +.....+..-+ .|.| ..+.+=+.|.+.++.+.+....+|..
T Consensus       170 vtGsYDg~vrl~Dt--R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDT--RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             EecCCCceEEEEEe--ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence            7554 34  55522  11111111111 1223 44555566667776655544555544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=94.55  E-value=3.6  Score=37.48  Aligned_cols=140  Identities=12%  Similarity=0.088  Sum_probs=72.0

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-----EEEeecCCccccceEEcCCCCEEE-Ee-CCCCe--EEEcC--
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-----VNWKHIDSQSLLGLTTTKDGGVIL-CD-NEKGL--LKVTE--  121 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-----~~~~~~~~~p~~gl~~d~~G~L~v-~d-~~~gl--~~~~~--  121 (351)
                      .-.+++|..++..|-+...|+.|..|+.++=..     .+..-.-+.|. -++|.+|-+-+| .- .++.+  |..++  
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            346899995555666667788888887643211     11112234677 888888764332 22 23333  33332  


Q ss_pred             CC-e-EEec--CCC-------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCc
Q 018705          122 EG-V-EAIV--PDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGF  189 (351)
Q Consensus       122 ~g-~-~~l~--~~~-------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~  189 (351)
                      +| . ....  +..       .-+-++-+..++.+..+.+.                 +..|..|+.+ |+. ..+-...
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----------------dt~i~lw~lk-Gq~L~~idtnq  228 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----------------DTKICLWDLK-GQLLQSIDTNQ  228 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----------------CCcEEEEecC-Cceeeeecccc
Confidence            45 2 1111  111       11112333333333344433                 2358888887 444 3332222


Q ss_pred             cccceEEEcCCCCEEEEEecce
Q 018705          190 YFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ....-.++||+|+++-++....
T Consensus       229 ~~n~~aavSP~GRFia~~gFTp  250 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTP  250 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCC
Confidence            3334568999999777766555

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.54  E-value=0.19  Score=30.84  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             cCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEc
Q 018705          141 SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS  198 (351)
Q Consensus       141 ~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~  198 (351)
                      |+| ++|+++..                 .+.|..+|+++++...-......|.+++++
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            344 58998864                 468999999887765545556788888875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.46  E-value=1.1  Score=41.27  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=62.4

Q ss_pred             EEeeCCCeEEEEE----cCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc--CCC--eEEe
Q 018705           58 SVVVSKGALYTAT----RDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT--EEG--VEAI  127 (351)
Q Consensus        58 ~~d~~~g~lyv~~----~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~--~~g--~~~l  127 (351)
                      |+.+..++-|.+.    ..|.|+.+|..+=+. ..+....+... .|+|+++|.+..+.+.+| ++|+.  ++|  +..+
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            5554455555433    368899998754333 34444445566 899999999998776655 56665  577  6666


Q ss_pred             cCCC--CCcccEEEccCCcEEEEeCC
Q 018705          128 VPDA--SFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       128 ~~~~--~~~n~l~~d~dG~ly~t~~~  151 (351)
                      ..+.  ..+.+|++++|+.+..+.+.
T Consensus       213 RRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  213 RRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             eCCceeeEEEEEEECCCCCeEEEecC
Confidence            5553  67889999999986655544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.37  E-value=0.88  Score=47.01  Aligned_cols=139  Identities=13%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             CCCceEEEeeCCCeE-EEE-EcCCEEEEEEcCCCeE-EEEeecCCccccceEEcC------CCCEEEEeCCCCeEEEcC-
Q 018705           52 NHPEDVSVVVSKGAL-YTA-TRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTK------DGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        52 ~~pe~i~~d~~~g~l-yv~-~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~------~G~L~v~d~~~gl~~~~~-  121 (351)
                      ..|..+.....+..+ +.. .....|+++|...|++ +.|......|...++-+.      +..-|++-..++++++|+ 
T Consensus       481 ~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  481 FTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             cCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence            345554444233333 333 2356799999998986 455433222221333331      235788888899999995 


Q ss_pred             -CC-eEEecC--C---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-c
Q 018705          122 -EG-VEAIVP--D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-N  193 (351)
Q Consensus       122 -~g-~~~l~~--~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-n  193 (351)
                       .| ..+...  .   .....+++.+.+|.|-++..                  .|.|-.||.-+.+.+....++..| -
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence             45 221111  1   15667888888998877654                  467888886544444444454444 5


Q ss_pred             eEEEcCCCCEEEEEe
Q 018705          194 GIALSKNEDFVVVCE  208 (351)
Q Consensus       194 gi~~~~dg~~lyv~~  208 (351)
                      ||.++.||+++..+.
T Consensus       623 ~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  623 GIDVTADGKWILATC  637 (794)
T ss_pred             EEEecCCCcEEEEee
Confidence            899999999665543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.25  E-value=4.2  Score=37.02  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=85.9

Q ss_pred             EEcCCEEEEEEcCCCe------EEEEeec-CCccccceEEcCC---CCEEEEeCCCCeEEEcCCC--eEEe----cCCC-
Q 018705           69 ATRDGWVKYFILHNET------LVNWKHI-DSQSLLGLTTTKD---GGVILCDNEKGLLKVTEEG--VEAI----VPDA-  131 (351)
Q Consensus        69 ~~~~g~I~~~d~~~g~------~~~~~~~-~~~p~~gl~~d~~---G~L~v~d~~~gl~~~~~~g--~~~l----~~~~-  131 (351)
                      .+++|.|.-|.+.-+.      +..+... .+..+.|+++...   ..||.++-.++.+.+.+..  ...+    .+.. 
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            4667888877653222      2222222 2455668888733   4799999877665554322  1111    1110 


Q ss_pred             ---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcC------C
Q 018705          132 ---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSK------N  200 (351)
Q Consensus       132 ---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~------d  200 (351)
                         ..|..|.. -.|+||++-....-.    ..+-..+...|-|-+||++..-++++..+  +..|.||++.|      .
T Consensus       186 PagyAPFnIqn-ig~~lyVtYA~qd~~----~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       186 PAGYAPFNVQN-LGGTLYVTYAQQDAD----RNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCcceEE-ECCeEEEEEEecCCc----ccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence               45666643 247899986431111    12223345567899999986656666543  67899999966      3


Q ss_pred             CCEEEEEecce-eEEeecCCCCc
Q 018705          201 EDFVVVCESWK-RYWLKGDRAGI  222 (351)
Q Consensus       201 g~~lyv~~~~~-~~~i~~~~~~~  222 (351)
                      |+ |.|...+. +|..-+...++
T Consensus       261 g~-lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       261 GA-LLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CC-eEEeecCCceeEEecCCCCc
Confidence            44 77877766 77666554444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.22  E-value=1.5  Score=41.35  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             CceEEEEeCCCCeEEEeecCc-cccceEEEcCCCCEEEE-EecceeEEeecCCCCceeEEeccCCCCC--CceEECCCCC
Q 018705          169 YGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVV-CESWKRYWLKGDRAGILDAFIENLPGGP--DNINLAPDGS  244 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~-~~~ngi~~~~dg~~lyv-~~~~~~~~i~~~~~~~~~~~~~~~~g~p--d~i~~d~~G~  244 (351)
                      ...+|.+|.++++++.+.++- ....|..++++.+.+|+ -+..+.+.++-.+.....++... .++.  .....++++.
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t  137 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCT  137 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSS
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCcc
Confidence            347999999999998887653 23347788888887655 44333333332222233344311 1111  1234578899


Q ss_pred             EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE
Q 018705          245 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN  306 (351)
Q Consensus       245 lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~  306 (351)
                      ++++....+... ..+......+++...             .+..+|+.+|-.+|+....+.
T Consensus       138 ~~~g~e~~~~d~-~~l~~~~~f~e~~~a-------------~p~~~i~~idl~tG~~~~v~~  185 (386)
T PF14583_consen  138 KLVGIEISREDW-KPLTKWKGFREFYEA-------------RPHCRIFTIDLKTGERKVVFE  185 (386)
T ss_dssp             EEEEEEEEGGG------SHHHHHHHHHC----------------EEEEEEETTT--EEEEEE
T ss_pred             EEEEEEEeehhc-cCccccHHHHHHHhh-------------CCCceEEEEECCCCceeEEEe
Confidence            988875432211 111122233343332             233578888885665444333

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.06  E-value=0.28  Score=30.51  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             CcEEEEeCCCccCCcccccccccccCCc-eEEEEeCCCCeE-EEeecCccccceEEEcC
Q 018705          143 GTLYFTVASTKYTPTDFYKDMAEGKPYG-QLRKYDPKLKET-TVLHEGFYFANGIALSK  199 (351)
Q Consensus       143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~  199 (351)
                      |+||+||..                 .. .+.+-+.++... ..+...+..|+||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999986                 23 677766665444 44557789999999974

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.68  E-value=3.3  Score=39.58  Aligned_cols=139  Identities=16%  Similarity=0.150  Sum_probs=88.1

Q ss_pred             CCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CCeEEe-
Q 018705           52 NHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EGVEAI-  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g~~~l-  127 (351)
                      ..-.+.++.|.++ .+.+|..||.|..||.............+.|.-.+.+-+.|.+++...+ ..++++.  .|.+.+ 
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence            3456777776655 5667889999999997544333333344555435666688888877654 4666663  352222 


Q ss_pred             --cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccc---eEEEcCCCC
Q 018705          128 --VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN---GIALSKNED  202 (351)
Q Consensus       128 --~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n---gi~~~~dg~  202 (351)
                        ......+.++++..+++-.++.+-                 ++.|-.||..  ..+++ ....+|.   .|+++||++
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sL-----------------D~~VKVfd~t--~~Kvv-~s~~~~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSL-----------------DRHVKVFDTT--NYKVV-HSWKYPGPVLSIAVSPDDQ  292 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeeccc-----------------ccceEEEEcc--ceEEE-EeeecccceeeEEecCCCc
Confidence              112256788888887754444433                 5678888843  34332 3445555   478999999


Q ss_pred             EEEEEecce
Q 018705          203 FVVVCESWK  211 (351)
Q Consensus       203 ~lyv~~~~~  211 (351)
                      .++++-+++
T Consensus       293 t~viGmsnG  301 (487)
T KOG0310|consen  293 TVVIGMSNG  301 (487)
T ss_pred             eEEEecccc
Confidence            899987777

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.60  E-value=0.42  Score=29.20  Aligned_cols=41  Identities=10%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             eCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEc
Q 018705           61 VSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTT  102 (351)
Q Consensus        61 ~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d  102 (351)
                      |+++.+|++.. ++.|..+|..+++.......+..|. +++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence            35788999775 7789999987777655555567788 88764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=93.53  E-value=6.7  Score=36.92  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      -.++.|-+..+.|.++..|..|..|+...++...   .....+... .+.+|+++.-.++....+-.+++
T Consensus       178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCceeee
Confidence            3467787556889998888888888764444322   223334456 89999999877777666655555

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.51  E-value=4.4  Score=40.30  Aligned_cols=170  Identities=15%  Similarity=0.239  Sum_probs=88.6

Q ss_pred             EEEeeCCCe-EEEEEcCCEEEEEEcCCC--eE-EE----EeecCCccccceEEcCCCCEEEEeCCCCeEEEc---CC--C
Q 018705           57 VSVVVSKGA-LYTATRDGWVKYFILHNE--TL-VN----WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EE--G  123 (351)
Q Consensus        57 i~~d~~~g~-lyv~~~~g~I~~~d~~~g--~~-~~----~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~--g  123 (351)
                      +..|..+++ ||+|..||.|..|+....  +. +.    +.......+ .|+.-.+|+-+|.-+..-.++++   .+  .
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            344444555 999999998888875222  11 11    111223455 66666677544443334445554   23  2


Q ss_pred             -eEEecCCCCCcccEEE-ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-------Cc-----
Q 018705          124 -VEAIVPDASFTNDVIA-ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-------GF-----  189 (351)
Q Consensus       124 -~~~l~~~~~~~n~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------~~-----  189 (351)
                       ..++.+....+..++. .++..+.++.+-                 +++|+.||-+++..+.+..       .+     
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGL-----------------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGL-----------------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCC-----------------CccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence             4445444456777777 555555555432                 4578888877663222110       01     


Q ss_pred             cccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCce---EECCCCCEEEEEe
Q 018705          190 YFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNI---NLAPDGSFWIGLI  250 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i---~~d~~G~lwva~~  250 (351)
                      .....++..+.| +++++....   |+|  +++......   .+.|.-||+   .+++||+-.++..
T Consensus       172 ~siYSLA~N~t~-t~ivsGgtek~lr~w--Dprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  172 DSIYSLAMNQTG-TIIVSGGTEKDLRLW--DPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             cceeeeecCCcc-eEEEecCcccceEEe--cccccccee---eeeccccceEEEEEcCCCCeEeecC
Confidence            122345666666 466654333   555  443322211   233556775   5688897666643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=93.28  E-value=6.9  Score=36.32  Aligned_cols=183  Identities=12%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             CceEEEeeCCC-eEEEEEcCCEEEEEEcC-------------CCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEE
Q 018705           54 PEDVSVVVSKG-ALYTATRDGWVKYFILH-------------NETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLK  118 (351)
Q Consensus        54 pe~i~~d~~~g-~lyv~~~~g~I~~~d~~-------------~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~  118 (351)
                      -.+++|-|-.+ .+-|+...| |..|...             ++..+.+..++..|.+.|...+||..|+..+. ..-+.
T Consensus       143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~  221 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIM  221 (445)
T ss_pred             eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEE
Confidence            45677766443 345565554 6555321             11223344455566657888899988876544 33344


Q ss_pred             Ec-C-CC-eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce
Q 018705          119 VT-E-EG-VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (351)
Q Consensus       119 ~~-~-~g-~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  194 (351)
                      ++ + +| ...+. .......-+..+|||..+|+.+-..               .-+||.-+. +-..+...-+-....+
T Consensus       222 iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da---------------vfrlw~e~q-~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  222 IWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA---------------VFRLWQENQ-SWTKERWILGSGRVQT  285 (445)
T ss_pred             EEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------------eeeeehhcc-cceecceeccCCceee
Confidence            44 4 55 44443 2335666788999997666654200               012331111 1111222222225667


Q ss_pred             EEEcCCCCEEEEEecce--eEEee--cC--------CCCceeEEec--------c---CCCCCCceEECCCCCEEEEEec
Q 018705          195 IALSKNEDFVVVCESWK--RYWLK--GD--------RAGILDAFIE--------N---LPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~--~~~i~--~~--------~~~~~~~~~~--------~---~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      -+++|+|.+|.++-.+.  .|.+.  +.        ...+..+.++        +   .-|-+.-++.|+.|++.+..+.
T Consensus       286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            78999999888877666  34432  11        0011112222        0   1133566899999987777666


Q ss_pred             CC
Q 018705          252 MN  253 (351)
Q Consensus       252 ~~  253 (351)
                      +.
T Consensus       366 g~  367 (445)
T KOG2139|consen  366 GQ  367 (445)
T ss_pred             CC
Confidence            53

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.26  E-value=7.3  Score=36.53  Aligned_cols=136  Identities=24%  Similarity=0.247  Sum_probs=71.9

Q ss_pred             eEEEEeCCCCeEEEeec------CccccceEEEcCCCCEEEEEecce-----eEEeecCCCCceeEEec-cCCCC---CC
Q 018705          171 QLRKYDPKLKETTVLHE------GFYFANGIALSKNEDFVVVCESWK-----RYWLKGDRAGILDAFIE-NLPGG---PD  235 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~------~~~~~ngi~~~~dg~~lyv~~~~~-----~~~i~~~~~~~~~~~~~-~~~g~---pd  235 (351)
                      .|+.+|.++++...+..      .-..-..+.+.+|++.+++...++     ++.+.+...+..+.... ..++.   ..
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            47778887776533221      112233577888887677766554     23333333344333322 22222   23


Q ss_pred             ceEEC-CCC--CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCc
Q 018705          236 NINLA-PDG--SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY  312 (351)
Q Consensus       236 ~i~~d-~~G--~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~  312 (351)
                      ...+- ++|  -+|+.. .                                  .....+..++. +|.....+.  .|. 
T Consensus       239 ~~~~~~~~~~~~l~~s~-~----------------------------------~G~~hly~~~~-~~~~~~~lT--~G~-  279 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISE-R----------------------------------DGYRHLYLYDL-DGGKPRQLT--SGD-  279 (353)
T ss_dssp             EEEE-TTTSSEEEEEEE-T----------------------------------TSSEEEEEEET-TSSEEEESS---SS-
T ss_pred             ccccccCCCCEEEEEEE-c----------------------------------CCCcEEEEEcc-cccceeccc--cCc-
Confidence            34432 333  366654 2                                  22457899999 777665554  232 


Q ss_pred             ccceeEEE---EECCEEEEEecC----CCeEEEEeCC-CCCC
Q 018705          313 ISFVTSAA---EFDGNLYLASLQ----SNFIGILPLD-GPEP  346 (351)
Q Consensus       313 ~~~~~~~~---~~~g~L~ig~~~----~~~i~~~~~~-~~~~  346 (351)
                       ..++.+.   ..++.||+....    ...|+++++. +.++
T Consensus       280 -~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~  320 (353)
T PF00930_consen  280 -WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP  320 (353)
T ss_dssp             -S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred             -eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence             3444443   235788887765    3488898888 5554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=93.22  E-value=1.5  Score=42.43  Aligned_cols=63  Identities=21%  Similarity=0.187  Sum_probs=40.2

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEecc
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      ..+|.+++++||....+.+.                 +|-|-.||-.+.++.-+... +..--++++||||+++...-.+
T Consensus       291 g~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED  353 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED  353 (636)
T ss_pred             ccccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence            68999999999987777764                 45555555544443222211 2334578999999966654433


Q ss_pred             e
Q 018705          211 K  211 (351)
Q Consensus       211 ~  211 (351)
                      .
T Consensus       354 D  354 (636)
T KOG2394|consen  354 D  354 (636)
T ss_pred             c
Confidence            3

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.10  E-value=0.24  Score=30.34  Aligned_cols=27  Identities=26%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             eecCccccceEEEcCCCCEEEEEecce
Q 018705          185 LHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       185 ~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      +..++..|+|+++++.++.+|+++...
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~   30 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGL   30 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCC
Confidence            345678899999999999999999876

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=93.05  E-value=5.2  Score=39.29  Aligned_cols=113  Identities=16%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEec--
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIV--  128 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~--  128 (351)
                      +++.+...=-||++.....|||++...|++ ..+....+..+ .+.+.+...|+.+....|.+..+ + +.  +..+-  
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence            555553333466555556699999988876 34433334444 66667766777776666777776 2 32  33321  


Q ss_pred             CCC---------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          129 PDA---------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       129 ~~~---------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      ...         ..+..+.++.|| |=++.                |+..|.++.||..+.+...+.
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~g-L~~aV----------------Gts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDG-LHVAV----------------GTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             cccCCCccccccCcceEEEecCCc-eeEEe----------------eccCCcEEEEEcccCCceeec
Confidence            110         335566666665 22222                234688999998765544433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=92.99  E-value=6.3  Score=35.11  Aligned_cols=151  Identities=13%  Similarity=0.117  Sum_probs=93.1

Q ss_pred             CCcCCCceEEEeeCCCe-EEEEEcCCEEEEEEcCCC-eEEE--Ee-ecCCccccceEEcCCCCEEEEeCCCCeEEEcC--
Q 018705           49 GCVNHPEDVSVVVSKGA-LYTATRDGWVKYFILHNE-TLVN--WK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--  121 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~-lyv~~~~g~I~~~d~~~g-~~~~--~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--  121 (351)
                      +....--++++.|..|+ |+....|..|..++...+ .+.-  .. ....+....+|..|.|++..+.+......+.+  
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            33334568899965355 666777887877776422 2221  11 11223223889999999877777777777773  


Q ss_pred             CC-eEE---ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEe---ecCccccc
Q 018705          122 EG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVL---HEGFYFAN  193 (351)
Q Consensus       122 ~g-~~~---l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~---~~~~~~~n  193 (351)
                      ++ .+.   +....+-+-+++.+++|++..|.+..                 ..||.+... .++++..   ....+-.-
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-----------------KSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD-----------------KSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-----------------CeEEEEEecCCCcEEEEeeecccccccc
Confidence            44 443   33334778899999999999888752                 356655322 2454432   23344566


Q ss_pred             eEEEcCCCCEEEEEecce--eEEee
Q 018705          194 GIALSKNEDFVVVCESWK--RYWLK  216 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~--~~~i~  216 (351)
                      ++.++|....|+-+..++  ++|-.
T Consensus       155 ~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  155 HVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             EEEEcCCcceeEEeccCCeEEEEee
Confidence            789999888555566566  55544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.94  E-value=13  Score=38.69  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCcc---------ccceEEc-----------------CCCCEEEEeCCCCe
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQS---------LLGLTTT-----------------KDGGVILCDNEKGL  116 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p---------~~gl~~d-----------------~~G~L~v~d~~~gl  116 (351)
                      ++.+|+.+.++.|+.+|.++|+.. |......+         ..|+++-                 .++++|+.+....+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            789999999999999999999753 32111000         0133221                 23478888877788


Q ss_pred             EEEcC-CC
Q 018705          117 LKVTE-EG  123 (351)
Q Consensus       117 ~~~~~-~g  123 (351)
                      +.+|. +|
T Consensus       273 iALDA~TG  280 (764)
T TIGR03074       273 IALDADTG  280 (764)
T ss_pred             EEEECCCC
Confidence            99984 77

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.90  E-value=4.1  Score=40.51  Aligned_cols=172  Identities=11%  Similarity=0.095  Sum_probs=93.1

Q ss_pred             hccCCCccccccCCCCCCCcCccCceEecCCCcCCCceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEE---EEe-----
Q 018705           19 FFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALY-TATRDGWVKYFILHNETLV---NWK-----   89 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~p~~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~---~~~-----   89 (351)
                      +..|+-|.-..+|++-..|.  --...|.+- -..-.+++.-.++..++ .|.-|++|..||..+|..+   .+.     
T Consensus        88 lIS~SsDtTVK~W~~~~~~~--~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen   88 LISASSDTTVKVWNAHKDNT--FCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             eEEecCCceEEEeecccCcc--hhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence            34455565555565543330  011223222 23455777632444444 4556899999998766221   110     


Q ss_pred             ----ecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCccccc
Q 018705           90 ----HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK  161 (351)
Q Consensus        90 ----~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~  161 (351)
                          .+....+ .++..+.|.++|+..-.+.++++ + ++  +-.+...-..+..+.+++||+=.++.++          
T Consensus       165 sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----------  233 (735)
T KOG0308|consen  165 SLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----------  233 (735)
T ss_pred             cCCCCCcccee-eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----------
Confidence                1112346 78888888888877666777776 3 44  2223333357888999999987777766          


Q ss_pred             ccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecce
Q 018705          162 DMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       162 ~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                             +|.|-.||...++- ..+.-.-.....+..+++-+.+|.++..+
T Consensus       234 -------DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  234 -------DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             -------CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence                   56677777643221 11111111123344455555666666555

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=92.82  E-value=2.1  Score=42.71  Aligned_cols=97  Identities=13%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEe
Q 018705           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAI  127 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l  127 (351)
                      ...--+++++- ++..+.....||.|.+|+..++.+.+........+ .+....++.++|+....+.+++++.+  .+.+
T Consensus       178 HtD~VRgL~vl-~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I  255 (745)
T KOG0301|consen  178 HTDCVRGLAVL-DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQVI  255 (745)
T ss_pred             chhheeeeEEe-cCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence            33445677777 45455555678888899884444444444445566 77766777899988888999999755  4444


Q ss_pred             cCCCCCcccEEEccCCcEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFT  148 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t  148 (351)
                      ..+...+.+..+-++|.|++.
T Consensus       256 ~lPttsiWsa~~L~NgDIvvg  276 (745)
T KOG0301|consen  256 TLPTTSIWSAKVLLNGDIVVG  276 (745)
T ss_pred             ecCccceEEEEEeeCCCEEEe
Confidence            333223334444344444443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.72  E-value=1.9  Score=41.02  Aligned_cols=179  Identities=11%  Similarity=0.044  Sum_probs=85.4

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecC
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP  129 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~  129 (351)
                      .||-.+-....+..+.++...|.|..+|-.++++..-........ .+.+-.+-.+|.+.-..-+|.|+.+|  ++.+..
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence            589999888666678889999999999987776532111111111 22222222222221122344444444  333332


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEe
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      . ..++-+.+-|--.|.++.+.                 .|-+-..|-++|++.. +..+.....-++-.|-...+-++.
T Consensus       209 ~-~~v~rLeFLPyHfLL~~~~~-----------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  209 H-IRVARLEFLPYHFLLVAASE-----------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             c-Cchhhhcccchhheeeeccc-----------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence            2 23333333343334444332                 2344444555554311 111111222233334433344444


Q ss_pred             cce--eEEeecCCCCce--eEEeccCCCCCCceEECCCCCEEEEEecCC
Q 018705          209 SWK--RYWLKGDRAGIL--DAFIENLPGGPDNINLAPDGSFWIGLIKMN  253 (351)
Q Consensus       209 ~~~--~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~~G~lwva~~~~~  253 (351)
                      +++  .+|.  ++....  .++.  ..|....+++|+.|++-++++..|
T Consensus       271 snGtVSlWS--P~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr  315 (545)
T KOG1272|consen  271 SNGTVSLWS--PNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDR  315 (545)
T ss_pred             CCceEEecC--CCCcchHHHHHh--cCCCcceEEECCCCcEEeeccccc
Confidence            444  4553  222111  1222  234457899999999888876543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.62  E-value=6.5  Score=38.00  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             eEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 018705          171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  247 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwv  247 (351)
                      .||.+|..+++...+.........=.++|||+.++++....   .+++-+...+..+.+..... ....-..+++|...+
T Consensus       263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~SpdG~~i~  341 (425)
T COG0823         263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNSNPVWSPDGDKIV  341 (425)
T ss_pred             cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCcCccCCCCCCEEE
Confidence            58999988777655433322222346899999888865443   45554333333333332222 223456778887665


Q ss_pred             EEe
Q 018705          248 GLI  250 (351)
Q Consensus       248 a~~  250 (351)
                      -..
T Consensus       342 ~~~  344 (425)
T COG0823         342 FES  344 (425)
T ss_pred             EEe
Confidence            544

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.46  E-value=0.13  Score=27.70  Aligned_cols=16  Identities=38%  Similarity=0.729  Sum_probs=12.5

Q ss_pred             CceEECCCCCEEEEEe
Q 018705          235 DNINLAPDGSFWIGLI  250 (351)
Q Consensus       235 d~i~~d~~G~lwva~~  250 (351)
                      ..+..|++|+||+++.
T Consensus         8 ~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    8 YSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEE-TTSCEEEEET
T ss_pred             EEEEEcCCcCEEEEeC
Confidence            4578999999999974

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.32  E-value=8.4  Score=34.87  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=29.1

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK   89 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~   89 (351)
                      -+++|..++..+|++..|+.+-.||..++++..+.
T Consensus        76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~  110 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA  110 (347)
T ss_pred             EEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence            48899866668899999999999999888776653

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.31  E-value=2.1  Score=39.71  Aligned_cols=64  Identities=14%  Similarity=0.270  Sum_probs=41.1

Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEe--ecCc---------c----ccceEE
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL--HEGF---------Y----FANGIA  196 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~--~~~~---------~----~~ngi~  196 (351)
                      .+.+|++.++|.+|+++....           ......+|++|+++ |+. +.+  ...+         .    ...|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            577899988999999986520           00112478999877 544 222  1211         1    233799


Q ss_pred             EcCCCCEEEEEe
Q 018705          197 LSKNEDFVVVCE  208 (351)
Q Consensus       197 ~~~dg~~lyv~~  208 (351)
                      +++||++||++.
T Consensus       154 ~~~dG~~l~~~~  165 (326)
T PF13449_consen  154 VSPDGRTLFAAM  165 (326)
T ss_pred             ECCCCCEEEEEE
Confidence            999999788753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.25  E-value=9.6  Score=35.35  Aligned_cols=47  Identities=13%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEe
Q 018705           64 GALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCD  111 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d  111 (351)
                      -...+++.++.|..+|..+|+.+..... ..... .|++|..|.+.+.-
T Consensus       121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tc  168 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATC  168 (406)
T ss_pred             eEEEEecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEec
Confidence            3444566789999999888877543221 12244 78888888666654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.19  E-value=11  Score=36.02  Aligned_cols=64  Identities=8%  Similarity=-0.088  Sum_probs=34.4

Q ss_pred             ceEEE--eeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC------CccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           55 EDVSV--VVSKGALYTATRDGWVKYFILHNETLVNWKHID------SQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        55 e~i~~--d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~------~~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      -+|+|  + +.++-|+....|.|++-+-....++....+.      ..+..++.+. +++.|++-.. +++....
T Consensus        91 ~~V~F~~~-d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~-~~~g~~vG~~-G~il~T~  162 (398)
T PLN00033         91 LDIAFVPD-DPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK-GKEGWIIGKP-AILLHTS  162 (398)
T ss_pred             EEEEeccC-CCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEE-CCEEEEEcCc-eEEEEEc
Confidence            47777  3 4567777666787776543122444432111      1132278776 4678887543 5555444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=92.15  E-value=11  Score=35.94  Aligned_cols=139  Identities=11%  Similarity=0.067  Sum_probs=72.5

Q ss_pred             ceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecC---CccccceEEc-CCCCEEEEeCCCCeEEEc-C-CC--eE
Q 018705           55 EDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTT-KDGGVILCDNEKGLLKVT-E-EG--VE  125 (351)
Q Consensus        55 e~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~---~~p~~gl~~d-~~G~L~v~d~~~gl~~~~-~-~g--~~  125 (351)
                      .+|.+.|.+ ..+|..+.||.|...|..++.++.+....   ..-. ++-+. .++.+++++..+..-.++ + +|  ..
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs-~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS-SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeee-eccccCCCccEEEeecccceEEEEeecCCccch
Confidence            467777644 46788888898888888666554332211   1112 33333 355777777665333333 2 33  22


Q ss_pred             EecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC--CeEEEee---cCccccceEEEcC
Q 018705          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL--KETTVLH---EGFYFANGIALSK  199 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~~~~~~~---~~~~~~ngi~~~~  199 (351)
                      .+......++++++.|-. .+.+|.+.                 ++.+-.||...  ++...+.   ..-...|...|||
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~-----------------D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP  379 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASL-----------------DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP  379 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeeccc-----------------CcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence            222222478888888865 34444443                 12233444221  1111011   1123456788999


Q ss_pred             CCCEEEEEecce
Q 018705          200 NEDFVVVCESWK  211 (351)
Q Consensus       200 dg~~lyv~~~~~  211 (351)
                      .+.+|..+..++
T Consensus       380 s~gtl~TT~~D~  391 (498)
T KOG4328|consen  380 SGGTLLTTCQDN  391 (498)
T ss_pred             CCCceEeeccCC
Confidence            888766655555

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=92.01  E-value=2.7  Score=39.34  Aligned_cols=59  Identities=14%  Similarity=0.101  Sum_probs=38.5

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCC
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDG  105 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G  105 (351)
                      +..+...-+-+++|.+++..+-.+.-++.++.+|...|.+.... .....+. |.+.|+-+
T Consensus       118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~  177 (434)
T KOG1009|consen  118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLN  177 (434)
T ss_pred             EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhh
Confidence            33333345668899976666777888999999998888765432 2334455 66666543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.97  E-value=14  Score=36.76  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                      ...+.+.++|.++||.+-.+..+.+.....  .....+|++|+...
T Consensus       479 ~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P--~ty~~~G~qYv~~~  522 (527)
T TIGR03075       479 TLEGYFKAFDAKTGEELWKFKTGSGIVGPP--VTYEQDGKQYVAVL  522 (527)
T ss_pred             CCCCeEEEEECCCCCEeEEEeCCCCceecC--EEEEeCCEEEEEEE
Confidence            445678889998999888776543221111  12245899998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.76  E-value=1.8  Score=42.38  Aligned_cols=143  Identities=14%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EE---ee----cC----CccccceEEcCCC-CEEEEeCCCCeEEEc-
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NW---KH----ID----SQSLLGLTTTKDG-GVILCDNEKGLLKVT-  120 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~---~~----~~----~~p~~gl~~d~~G-~L~v~d~~~gl~~~~-  120 (351)
                      .++.+.+..|++-+|+.+|.+-.||+.+.... .+   ..    ++    ..+. .+.|+.+| .+=|++..+.++.++ 
T Consensus       179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEc
Confidence            35566666788889999999999998665321 11   11    11    1255 78888777 566777666677777 


Q ss_pred             CCC-eEEecCCC--CCcccEEEcc-C-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceE
Q 018705          121 EEG-VEAIVPDA--SFTNDVIAAS-D-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI  195 (351)
Q Consensus       121 ~~g-~~~l~~~~--~~~n~l~~d~-d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi  195 (351)
                      ... .-...+..  .-+..+.+-+ + +.-.++...                  ..+-.||+.+|+.....+....-|-+
T Consensus       258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk------------------~~~kiWd~~~Gk~~asiEpt~~lND~  319 (703)
T KOG2321|consen  258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK------------------RILKIWDECTGKPMASIEPTSDLNDF  319 (703)
T ss_pred             ccCCceeecccCCccceeeecccccCCCceEEecch------------------HHhhhcccccCCceeeccccCCcCce
Confidence            333 22222221  1122222211 1 222233221                  13455777778776666666667888


Q ss_pred             EEcCCCCEEEEEecce---eEEee
Q 018705          196 ALSKNEDFVVVCESWK---RYWLK  216 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~---~~~i~  216 (351)
                      |+-|++..++++..+.   .|.+.
T Consensus       320 C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  320 CFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             eeecCCceEEEecCCCcceeEEcc
Confidence            8889888555555444   45543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=91.60  E-value=10  Score=34.31  Aligned_cols=138  Identities=17%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCEEEEeCC-CCeEEEc-CCC--eEEec
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG--VEAIV  128 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~-~~g--~~~l~  128 (351)
                      .+.|+|++-.+..+..|..|+.|+- .|.-+.+...   .+-.. ++.+.+|++..++-.. ..++..| .+|  .+...
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEec-cccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            4577875445556777889999985 3433333221   22234 7778889976655444 4455555 366  33333


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      ....+.|.+.....|-..++..+                .++.+-.||..+++.......-..-..++|..++.-+..+-
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             cccceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence            33467888776666755554433                25667777765433211111111122345555555455555


Q ss_pred             cce
Q 018705          209 SWK  211 (351)
Q Consensus       209 ~~~  211 (351)
                      .++
T Consensus       194 Idn  196 (338)
T KOG0265|consen  194 IDN  196 (338)
T ss_pred             ccC
Confidence            554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.56  E-value=12  Score=34.87  Aligned_cols=133  Identities=20%  Similarity=0.227  Sum_probs=72.5

Q ss_pred             eEEEEeCCCCeEEEee--cC-ccccce-EEEcCCCCEEEEE--ecce---eEEeecCCCCceeEEeccCCCCCCceEECC
Q 018705          171 QLRKYDPKLKETTVLH--EG-FYFANG-IALSKNEDFVVVC--ESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAP  241 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~--~~-~~~~ng-i~~~~dg~~lyv~--~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~  241 (351)
                      .+|.||-++  ++.+.  +. ...|.| +|++++..--|.+  +...   .+..+..+......+ +...+.--.+++++
T Consensus       107 ~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~  183 (391)
T KOG2110|consen  107 SIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-NAHKGPLAALAFSP  183 (391)
T ss_pred             cEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-EecCCceeEEEECC
Confidence            588898753  33332  22 245665 4666655423333  2222   222122222222222 12233334578999


Q ss_pred             CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE-ECCCCeEEEEEECCCCCcccceeEEE
Q 018705          242 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV-DGNDGKIIRDFNDPDATYISFVTSAA  320 (351)
Q Consensus       242 ~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~~~~~~~~~g~~~~~~~~~~  320 (351)
                      +|++..+...                                    .|.|+|+ +-.+|+.+..|.  .|...-.+.++.
T Consensus       184 ~G~llATASe------------------------------------KGTVIRVf~v~~G~kl~eFR--RG~~~~~IySL~  225 (391)
T KOG2110|consen  184 DGTLLATASE------------------------------------KGTVIRVFSVPEGQKLYEFR--RGTYPVSIYSLS  225 (391)
T ss_pred             CCCEEEEecc------------------------------------CceEEEEEEcCCccEeeeee--CCceeeEEEEEE
Confidence            9998776543                                    3566665 323888888775  344445677888


Q ss_pred             EEC-CEEEEEecCCCeEEEEeCCCC
Q 018705          321 EFD-GNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       321 ~~~-g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ++. .++...+.....|-.|++...
T Consensus       226 Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  226 FSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ECCCCCeEEEecCCCeEEEEEeccc
Confidence            764 455555555677888887654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.39  E-value=11  Score=34.14  Aligned_cols=60  Identities=18%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             cEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEEEEEec
Q 018705          136 DVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       136 ~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      .-++++||. +|.|+...+             ...|-|-.||.. .....+   ......|.-+.+.+||+++.++.-
T Consensus       118 HGvfs~dG~~LYATEndfd-------------~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         118 HGVFSPDGRLLYATENDFD-------------PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccccCCCCcEEEeecCCCC-------------CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            347889995 677765411             123556777765 333332   233456888999999998887764

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=91.20  E-value=0.31  Score=26.27  Aligned_cols=15  Identities=13%  Similarity=0.277  Sum_probs=9.3

Q ss_pred             ceEEcCCCCEEEEeC
Q 018705           98 GLTTTKDGGVILCDN  112 (351)
Q Consensus        98 gl~~d~~G~L~v~d~  112 (351)
                      .|..|++|+||+++.
T Consensus         9 ~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    9 SIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEE-TTSCEEEEET
T ss_pred             EEEEcCCcCEEEEeC
Confidence            666677777777653

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.19  E-value=11  Score=33.70  Aligned_cols=138  Identities=17%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccc-cceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSL-LGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~-~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l  127 (351)
                      .|--+.-| ..-.+|++++.+++..+|+++|++. |... +.|.. ..+.+  .+.+.++=..+++|.+. ++|  ...+
T Consensus        14 spLVV~~d-skT~v~igSHs~~~~avd~~sG~~~-We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f   89 (354)
T KOG4649|consen   14 SPLVVCND-SKTLVVIGSHSGIVIAVDPQSGNLI-WEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNF   89 (354)
T ss_pred             CcEEEecC-CceEEEEecCCceEEEecCCCCcEE-eehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeee
Confidence            34444444 4567899999999999999999763 2221 22211 02222  11233343445566666 455  2212


Q ss_pred             cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce----EEEcC-CC
Q 018705          128 VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG----IALSK-NE  201 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng----i~~~~-dg  201 (351)
                      ......--.-..|++| -||.+. .                 ++.+|.+|+++..- ++.  ...+-+    -++++ ++
T Consensus        90 ~~~~~vk~~a~~d~~~glIycgs-h-----------------d~~~yalD~~~~~c-Vyk--skcgG~~f~sP~i~~g~~  148 (354)
T KOG4649|consen   90 VILETVKVRAQCDFDGGLIYCGS-H-----------------DGNFYALDPKTYGC-VYK--SKCGGGTFVSPVIAPGDG  148 (354)
T ss_pred             eehhhhccceEEcCCCceEEEec-C-----------------CCcEEEecccccce-EEe--cccCCceeccceecCCCc
Confidence            1111111122466666 456543 2                 45678888765432 111  112222    24555 44


Q ss_pred             CEEEEEecce-eEEee
Q 018705          202 DFVVVCESWK-RYWLK  216 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~  216 (351)
                       .||++.+.+ .+.+.
T Consensus       149 -sly~a~t~G~vlavt  163 (354)
T KOG4649|consen  149 -SLYAAITAGAVLAVT  163 (354)
T ss_pred             -eEEEEeccceEEEEc
Confidence             599998887 44443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.15  E-value=3.3  Score=38.59  Aligned_cols=130  Identities=12%  Similarity=0.028  Sum_probs=78.7

Q ss_pred             CceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC--eE
Q 018705           54 PEDVSVVVS--KGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VE  125 (351)
Q Consensus        54 pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g--~~  125 (351)
                      +.++.|-+.  ...+.+.+.-+.+..||++.++-  ..+.. ..+|...+..++.|+ +|+++....+..+|- .+  ..
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence            445666533  34455677788899999865532  22222 234444778888885 688887777888884 44  11


Q ss_pred             E-ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705          126 A-IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~-l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg  201 (351)
                      . +......+.+|...|.+.+..+.+-.                 ..|..||.++.++......-..+|+|.+.++-
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLD-----------------RyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLD-----------------RYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccc-----------------eeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            1 22222789999999988887776542                 24667777653332222223567777776554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.07  E-value=5.4  Score=39.94  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=43.0

Q ss_pred             cccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705           95 SLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus        95 p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      .+ .+++.|||.-.+...++.++.+++ +|  .+++......++.++.+.||..+.+.++
T Consensus        15 i~-d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a   73 (1081)
T KOG1538|consen   15 IN-DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA   73 (1081)
T ss_pred             hh-eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC
Confidence            45 899999995444444678999995 66  6766655578999999999998887665

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.95  E-value=6.9  Score=35.62  Aligned_cols=98  Identities=11%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCC-C--eEEec
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE-G--VEAIV  128 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~-g--~~~l~  128 (351)
                      ..++.+.|++++..+++...++ |-.+...+-++-.....+-++. .+.++..+.|.++-...-+...|.+ +  ...+.
T Consensus       169 ~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l-~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~  246 (362)
T KOG0294|consen  169 NKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENPKRIL-CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL  246 (362)
T ss_pred             CcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhccccce-eeeecCCceEEEecCCceEEEeccCCCccceeee
Confidence            4577899998777888877765 5555443333322122224566 7788878888888765444444433 4  33333


Q ss_pred             CCCCCcccEE--EccCCcEEEEeCC
Q 018705          129 PDASFTNDVI--AASDGTLYFTVAS  151 (351)
Q Consensus       129 ~~~~~~n~l~--~d~dG~ly~t~~~  151 (351)
                      ...+++-+++  ..+++.+.+|.++
T Consensus       247 AH~~RVK~i~~~~~~~~~~lvTaSS  271 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHEYLVTASS  271 (362)
T ss_pred             cchhheeeeEEEecCCceEEEEecc
Confidence            3336677776  3456777777766

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=90.76  E-value=11  Score=34.22  Aligned_cols=143  Identities=15%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc---C--CC---eEE
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---E--EG---VEA  126 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~--~g---~~~  126 (351)
                      .++.|...+..+..|.-|+.|-.||+..+...........|..+|...++|....++.-...+++.   +  .+   +.+
T Consensus       178 tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i  257 (338)
T KOG0265|consen  178 TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI  257 (338)
T ss_pred             EEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence            467776455678888888889999987666655444334454489888999777766555555444   2  11   333


Q ss_pred             ecCCC--CCccc--EEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCC
Q 018705          127 IVPDA--SFTND--VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNE  201 (351)
Q Consensus       127 l~~~~--~~~n~--l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg  201 (351)
                      +....  ...|-  ...+|+++.. +-                +..+..+|.||..+..+.. +.......|.+.|+|.+
T Consensus       258 f~g~~hnfeknlL~cswsp~~~~i-~a----------------gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  258 FQGHIHNFEKNLLKCSWSPNGTKI-TA----------------GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             eecchhhhhhhcceeeccCCCCcc-cc----------------ccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence            32221  11111  1233343211 11                1113357888865433332 23334567888888888


Q ss_pred             CEEEEEecceeEE
Q 018705          202 DFVVVCESWKRYW  214 (351)
Q Consensus       202 ~~lyv~~~~~~~~  214 (351)
                      ..+.-+.+++++.
T Consensus       321 ~iils~~sdk~i~  333 (338)
T KOG0265|consen  321 PIILSCSSDKTIY  333 (338)
T ss_pred             cEEEEeccCceeE
Confidence            7554455444433

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=90.61  E-value=1.1  Score=32.86  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=26.4

Q ss_pred             CeEEEcCCCeEEecCCCCCcccEEEccCC-cEEEEeCC
Q 018705          115 GLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVAS  151 (351)
Q Consensus       115 gl~~~~~~g~~~l~~~~~~~n~l~~d~dG-~ly~t~~~  151 (351)
                      .++.++++..+..++...+||+|++++++ .||+++..
T Consensus        37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~   74 (86)
T PF01731_consen   37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSL   74 (86)
T ss_pred             eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence            34444433345556666899999999987 69999875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.42  E-value=13  Score=34.71  Aligned_cols=139  Identities=13%  Similarity=0.012  Sum_probs=73.7

Q ss_pred             eEEEeeCCCeEEEEE--cC---CEEEEEEcCCCeEEEEee--cCC--ccccceEEc-CCC--CEEEEeCC--CCeEEEcC
Q 018705           56 DVSVVVSKGALYTAT--RD---GWVKYFILHNETLVNWKH--IDS--QSLLGLTTT-KDG--GVILCDNE--KGLLKVTE  121 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~--~~---g~I~~~d~~~g~~~~~~~--~~~--~p~~gl~~d-~~G--~L~v~d~~--~gl~~~~~  121 (351)
                      .+.|.+++..+++..  .+   -.+..+|..+++.+....  ..+  .+...+.+- +++  -||+....  ..|+.++.
T Consensus       188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            455654444365532  21   245666776665543321  111  111033332 333  46666622  25777776


Q ss_pred             CC--eEEecCCCCCccc-EEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEeecCccccceEE
Q 018705          122 EG--VEAIVPDASFTND-VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEGFYFANGIA  196 (351)
Q Consensus       122 ~g--~~~l~~~~~~~n~-l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~~~~~~~~ngi~  196 (351)
                      ++  .+.+..+.-.+++ +.+|+++ .|||+.....             .....||+.+.+ +++.+.+......-..+.
T Consensus       268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYRVSLDSGGEPKCLTCEDGDHYSAS  334 (353)
T ss_dssp             TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred             cccceeccccCceeecccceEcCCCCEEEEEecCCC-------------CCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence            55  5666555333433 5678775 7898876411             112369999988 788877654332224899


Q ss_pred             EcCCCCEEEEE
Q 018705          197 LSKNEDFVVVC  207 (351)
Q Consensus       197 ~~~dg~~lyv~  207 (351)
                      +||+++++..+
T Consensus       335 ~Spdg~y~v~~  345 (353)
T PF00930_consen  335 FSPDGKYYVDT  345 (353)
T ss_dssp             E-TTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999855443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=90.42  E-value=24  Score=36.44  Aligned_cols=137  Identities=12%  Similarity=0.118  Sum_probs=74.6

Q ss_pred             CccccceEEcCCCCE-EEEeCCCCeEEEc-CCC--eEEecCC---CCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705           93 SQSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG--VEAIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L-~v~d~~~gl~~~~-~~g--~~~l~~~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  165 (351)
                      .... .++++.=|+. +++.+.+.+-+++ ..|  ...+.+.   ...+.++++|.-+++.++...              
T Consensus       449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~--------------  513 (910)
T KOG1539|consen  449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA--------------  513 (910)
T ss_pred             cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC--------------
Confidence            3445 6777788875 4555555566666 366  3344321   167889999998889888875              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCC-CceeEEeccCCCCCCceEECCCC
Q 018705          166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRA-GILDAFIENLPGGPDNINLAPDG  243 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~-~~~~~~~~~~~g~pd~i~~d~~G  243 (351)
                         .|-+..||-+++....-..-...+.+|..+.... ++....+. .+.+.+..+ .-++.|. +.......+.+++||
T Consensus       514 ---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  514 ---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDG  588 (910)
T ss_pred             ---cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCC
Confidence               5667777776544322222234566666666554 33322222 333332111 1122222 112234557899999


Q ss_pred             CEEEEE
Q 018705          244 SFWIGL  249 (351)
Q Consensus       244 ~lwva~  249 (351)
                      +-.++.
T Consensus       589 rWlisa  594 (910)
T KOG1539|consen  589 RWLISA  594 (910)
T ss_pred             cEEEEe
Confidence            844443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.19  E-value=11  Score=36.94  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC---EEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEE
Q 018705          166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED---FVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINL  239 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~---~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~  239 (351)
                      |++.|.++.|+...|+++.......+++++...-+++   .+|-+....  .+|..  +.... ..+-. -+..+..++.
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~--~~~~~~~~~~~-~~~~~~sl~i  152 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE--KEKVIIRIWKE-QKPLVSSLCI  152 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec--ccceeeeeecc-CCCccceEEE
Confidence            4557889999988888877665444444333222222   233333333  34432  22221 22221 2224677899


Q ss_pred             CCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC
Q 018705          240 APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT  311 (351)
Q Consensus       240 d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~  311 (351)
                      .+||.+.+....                                      .+..+|-++++++..|.++.+.
T Consensus       153 s~D~~~l~~as~--------------------------------------~ik~~~~~~kevv~~ftgh~s~  186 (541)
T KOG4547|consen  153 SPDGKILLTASR--------------------------------------QIKVLDIETKEVVITFTGHGSP  186 (541)
T ss_pred             cCCCCEEEeccc--------------------------------------eEEEEEccCceEEEEecCCCcc
Confidence            999987665432                                      4777888788988888776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=90.18  E-value=3.7  Score=38.51  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l  127 (351)
                      .-.+++++|.+..+...+.||.|..||....+-+ .+...+..+. .+...+...|.++.+...++++. + .|  +-.+
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            3468899975555666677898988986554432 3344445566 77777776666666566688887 3 55  3334


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCC
Q 018705          128 VPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      ....+.+..+.+.++|+...|-+.
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccC
Confidence            333367888899999977777654

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=90.14  E-value=1.1  Score=27.20  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=25.9

Q ss_pred             CCcCCCceEEEeeCCCeEE-EEEcCCEEEEEEcC
Q 018705           49 GCVNHPEDVSVVVSKGALY-TATRDGWVKYFILH   81 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~   81 (351)
                      ..+..|.++++|+.++.+| +....+.|.+.+.+
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            3578899999999888765 66667788888763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.86  E-value=18  Score=34.12  Aligned_cols=86  Identities=19%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEE----ecC--CCCC
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEA----IVP--DASF  133 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~----l~~--~~~~  133 (351)
                      +|.+|+++.+|.++.+|..+|+..-.....+  .-. +-++-.++.+|+....+.++.+++ +|...    ...  ....
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            6889999999999999987786532222222  112 233345788888865567888886 57221    111  1111


Q ss_pred             cccEEEccCCcEEEEeC
Q 018705          134 TNDVIAASDGTLYFTVA  150 (351)
Q Consensus       134 ~n~l~~d~dG~ly~t~~  150 (351)
                      ..... ..+|.+|++..
T Consensus       190 ~~~~~-~~~~~vy~~~~  205 (370)
T COG1520         190 YGSPA-IASGTVYVGSD  205 (370)
T ss_pred             ccCce-eecceEEEecC
Confidence            22222 55778888765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.81  E-value=21  Score=34.94  Aligned_cols=137  Identities=9%  Similarity=0.016  Sum_probs=87.2

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l  127 (351)
                      -.+++|.  ...+-+|..++.|...|....+-  +.......... |+...++|+..........+.++.   .. +..+
T Consensus       263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             eEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence            3455663  66777788888888887643321  11233445678 999999998887766666666663   12 4444


Q ss_pred             cCCCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705          128 VPDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       128 ~~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      ......+-.+++.|- ..|..+-.+               ..++.|..||..+|....-.........+.+++..+.+..
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGG---------------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGG---------------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCC---------------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence            333355667777773 356555443               3356788889887765544444555667899998876655


Q ss_pred             Ee
Q 018705          207 CE  208 (351)
Q Consensus       207 ~~  208 (351)
                      +.
T Consensus       405 th  406 (484)
T KOG0305|consen  405 TH  406 (484)
T ss_pred             ec
Confidence            44

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=89.76  E-value=15  Score=33.27  Aligned_cols=170  Identities=15%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCC-CEEEEeCCCCeEEEc-C--CC-eE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-E--EG-VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~-~--~g-~~  125 (351)
                      .+-.+|...+..+.+..|.-|+.|-.||+.+. ...... .+...+   +.|-.| +|.|+.....+..++ +  +. .+
T Consensus        95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~~kkVy---~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q  170 (323)
T KOG1036|consen   95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQGKKVY---CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ  170 (323)
T ss_pred             CceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccccCceEE---EEeccCCEEEEeecCceEEEEEcccccchhh
Confidence            34557777766777888888999999998542 222111 112222   344344 677767666666666 2  11 21


Q ss_pred             EecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEE--EeCC----CCeEE----Eee----cCcc
Q 018705          126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK--YDPK----LKETT----VLH----EGFY  190 (351)
Q Consensus       126 ~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~----~~~~~----~~~----~~~~  190 (351)
                      .-...+ ....+|+.-|++.=|+..+-                 .|||..  +|++    ..+..    ...    +...
T Consensus       171 ~reS~lkyqtR~v~~~pn~eGy~~sSi-----------------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  171 RRESSLKYQTRCVALVPNGEGYVVSSI-----------------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             hccccceeEEEEEEEecCCCceEEEee-----------------cceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            112222 34555666565443443332                 233221  2221    00000    000    1123


Q ss_pred             ccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCc---eEECCCCCEEE
Q 018705          191 FANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDN---INLAPDGSFWI  247 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~---i~~d~~G~lwv  247 (351)
                      -.|.|+|+|-.++++-+..++  .+|=-    ...+.+. +++.+++.   ++++.+|....
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~-q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLK-QLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccC----cchhhhh-hccCCCCceEEEEeccCCCeEE
Confidence            468899999877777666666  45521    1111122 23445444   57888996443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=89.46  E-value=13  Score=32.18  Aligned_cols=126  Identities=13%  Similarity=0.081  Sum_probs=62.2

Q ss_pred             CCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---CC-eEEecCCC-------CCcccEEE
Q 018705           72 DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---EG-VEAIVPDA-------SFTNDVIA  139 (351)
Q Consensus        72 ~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~g-~~~l~~~~-------~~~n~l~~  139 (351)
                      |-+||.-|...|+- ..+....+... .+ +..+|.+++..+....++++.   .. +.++....       ..+..+++
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghil-al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHIL-AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEE-EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            44566666544432 22222222222 22 235666666665556666662   33 44443221       56778999


Q ss_pred             ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEecceeEEee
Q 018705          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWKRYWLK  216 (351)
Q Consensus       140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~  216 (351)
                      ||.|++.++.-.                 +..-..||-.+++. +.+...-.....+.|+|.-.++.-++.+.++.+.
T Consensus       240 dpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  240 DPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             CCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence            999999987532                 11222333222222 1111111223356788876655555555455544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=89.43  E-value=2.4  Score=40.84  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcCCC--
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTEEG--  123 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~~g--  123 (351)
                      .|.-.+..||.+..++-+||+|.-|+.+..||..+++- ....+. .... .|-..+.|. |.|+-....+..+...+  
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQIf-SLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhhe-ecccCCCccceeeecccCcEEEEecCCcc
Confidence            35556888999986677999999999999999877642 211111 1111 333334442 33333222222222222  


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      +..+.....-+-++-+.+-|..|++...
T Consensus       626 kyqlhlheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  626 KYQLHLHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             ceeecccccEEEEEEecccCceeeecCc
Confidence            3333333355667788888988888764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=89.33  E-value=24  Score=35.02  Aligned_cols=110  Identities=11%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecCCCCCcccEEEccCC-----------cEEEEeCCCccCCc
Q 018705           93 SQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDASFTNDVIAASDG-----------TLYFTVASTKYTPT  157 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~~~~~~n~l~~d~dG-----------~ly~t~~~~~~~~~  157 (351)
                      +... +|.+|+.|...+.....|.++++.  +|  ++++... ..+.+|++.|.+           .++|.+..  ++.+
T Consensus       401 g~Vr-~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~--~G~~  476 (733)
T KOG0650|consen  401 GLVR-SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI--FGDR  476 (733)
T ss_pred             CeEE-EEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc--ccch
Confidence            4455 788888776666666678888883  66  4433222 234444444433           33333332  2211


Q ss_pred             cc---cccc-----ccccCCceEEEEeCCC---C--eEEEeecCccccceEEEcCCCCEEEE
Q 018705          158 DF---YKDM-----AEGKPYGQLRKYDPKL---K--ETTVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       158 ~~---~~~~-----~~~~~~g~l~~~d~~~---~--~~~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      ..   ..+.     .+..+.+.+..|....   +  .+..........+-|.++..|++|-+
T Consensus       477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat  538 (733)
T KOG0650|consen  477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT  538 (733)
T ss_pred             hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence            00   1111     2234455667775431   1  13344555566778889999985443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=89.32  E-value=2.1  Score=42.44  Aligned_cols=138  Identities=18%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             ceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeE-------EE-EeecCCccccceEEcC--CCCEEEEeCCCCeEEEcC--
Q 018705           55 EDVSVVVS-KGALYTATRDGWVKYFILHNETL-------VN-WKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVTE--  121 (351)
Q Consensus        55 e~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~-------~~-~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~~--  121 (351)
                      .++.|||- ..+|-|++.+|+|..|....+..       +. +.......+ .|.|.+  .+-|.++. +.-.++++.  
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~as-yd~Ti~lWDl~  708 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVAS-YDSTIELWDLA  708 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhh-ccceeeeeehh
Confidence            36677764 46788888898776554322211       11 111122334 556654  22233333 344555552  


Q ss_pred             CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-c--cccceEE
Q 018705          122 EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F--YFANGIA  196 (351)
Q Consensus       122 ~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~--~~~ngi~  196 (351)
                      ++  ...+......+.+++.++||+...|...                 +|+|..|+|..++..+.... .  ...--|.
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~  771 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRGARIL  771 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcceeEE
Confidence            33  3333333367889999999988777643                 67899999987654332211 1  1122366


Q ss_pred             EcCCCCEEEEEecce
Q 018705          197 LSKNEDFVVVCESWK  211 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~  211 (351)
                      +.-||+.+.++..+.
T Consensus       772 wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  772 WACDGRIVIVVGFDK  786 (1012)
T ss_pred             EEecCcEEEEecccc
Confidence            777777666655544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.90  E-value=25  Score=34.48  Aligned_cols=121  Identities=12%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEecC-CCCCcc
Q 018705           62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVP-DASFTN  135 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l~~-~~~~~n  135 (351)
                      ..+.+.|+.... ||.|+..++++...... ...+. .+...++|..++.-...|.+.+..  +-  .+.+.. ....+-
T Consensus       187 s~n~laValg~~-vylW~~~s~~v~~l~~~~~~~vt-Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg  264 (484)
T KOG0305|consen  187 SANVLAVALGQS-VYLWSASSGSVTELCSFGEELVT-SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG  264 (484)
T ss_pred             cCCeEEEEecce-EEEEecCCCceEEeEecCCCceE-EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence            456777877654 99999988987666554 34556 889999997665555566666652  11  333322 112333


Q ss_pred             cEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--EEeecCccccceEEEcCCCCE
Q 018705          136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       136 ~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      .++  .++.++.+-+                 ..+.+..+|....+.  +.+...-....|+.+++|++.
T Consensus       265 ~la--W~~~~lssGs-----------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~  315 (484)
T KOG0305|consen  265 SLA--WNSSVLSSGS-----------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ  315 (484)
T ss_pred             EEe--ccCceEEEec-----------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe
Confidence            333  3344443332                 245677666543322  112223345778999999963

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=88.70  E-value=5.2  Score=36.84  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             ceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec-ce--eEE
Q 018705          170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES-WK--RYW  214 (351)
Q Consensus       170 g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~~--~~~  214 (351)
                      ..+-.|+.+|++......  .+-.|||--.-...+.|+.+ ++  |+|
T Consensus       340 RTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLW  385 (499)
T ss_pred             ceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEE
Confidence            357778877776544332  23456665443334666544 34  555

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=88.68  E-value=17  Score=32.33  Aligned_cols=23  Identities=13%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             ceEEc-CCCCEEEEeCCCCeEEEc
Q 018705           98 GLTTT-KDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        98 gl~~d-~~G~L~v~d~~~gl~~~~  120 (351)
                      |+..| .-|.||++...-+++++.
T Consensus       209 G~VaDdEtG~LYIaeEdvaiWK~~  232 (364)
T COG4247         209 GMVADDETGFLYIAEEDVAIWKYE  232 (364)
T ss_pred             ceeeccccceEEEeeccceeeecc
Confidence            77766 668999999888899988

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=88.61  E-value=13  Score=38.09  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCC--CeE---EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC-eEE
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHN--ETL---VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-VEA  126 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~--g~~---~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g-~~~  126 (351)
                      .+.++.|.+..+-++..+|+|..|..-.  +..   +.+.-...... +++|..+|.........+++.++.  ++ .+.
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            4667776666666777899998886422  111   11111223455 999999996554444557777773  44 444


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeC
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVA  150 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~  150 (351)
                      ++.-..-+-++.++||+.+|....
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEe
Confidence            433336678899999998886554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.01  E-value=12  Score=36.75  Aligned_cols=105  Identities=11%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCc---cccceEEcCCCCEEEEeC--------------CCCeEEEcCCC
Q 018705           62 SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQ---SLLGLTTTKDGGVILCDN--------------EKGLLKVTEEG  123 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~---p~~gl~~d~~G~L~v~d~--------------~~gl~~~~~~g  123 (351)
                      ++|.++++.. +++..+|. .|++ ..+..+.+.   .+ .+...++|++++...              ...++.++++|
T Consensus       157 ~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG  233 (477)
T PF05935_consen  157 PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTG  233 (477)
T ss_dssp             TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS
T ss_pred             CCCCEEEecC-CceEEEcC-CCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCC
Confidence            4566666555 56888887 4554 333333322   45 788889998766443              23577887777


Q ss_pred             --eEEec--CCC-------------------------CCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEE
Q 018705          124 --VEAIV--PDA-------------------------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus       124 --~~~l~--~~~-------------------------~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                        +..+.  +.+                         ...|++..++ ++.|.++...                 ...|+
T Consensus       234 ~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s~V~  296 (477)
T PF05935_consen  234 EVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QSAVI  296 (477)
T ss_dssp             -EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-EEE
T ss_pred             CEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ceEEE
Confidence              33321  000                         4577888887 6677777643                 34799


Q ss_pred             EEeCCCCeEEEee
Q 018705          174 KYDPKLKETTVLH  186 (351)
Q Consensus       174 ~~d~~~~~~~~~~  186 (351)
                      ++|.+++++....
T Consensus       297 ~Id~~t~~i~Wil  309 (477)
T PF05935_consen  297 KIDYRTGKIKWIL  309 (477)
T ss_dssp             EEE-TTS-EEEEE
T ss_pred             EEECCCCcEEEEe
Confidence            9997788876544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=87.78  E-value=18  Score=31.63  Aligned_cols=153  Identities=17%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcC-CCe------EEEEeecCCccccceEEcCCCCEEEEeC
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NET------LVNWKHIDSQSLLGLTTTKDGGVILCDN  112 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~-~g~------~~~~~~~~~~p~~gl~~d~~G~L~v~d~  112 (351)
                      +..+..|..+ ..+-..|+..| ++.||.-..+ .+++..+. .+.      -+.+...+-.-...|.+|+.|-||..+.
T Consensus        23 ~~~a~~iG~g-w~~~~~i~~~P-~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~   99 (229)
T PF14517_consen   23 SDRAITIGSG-WNNFRDIAAGP-NGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP   99 (229)
T ss_dssp             HHHSEEEESS--TT-SEEEE-T-TS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred             cchhhhcCcc-ccccceEEEcC-CceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc
Confidence            4455667664 55667888884 7888876644 68877221 111      1233222122222688899999999887


Q ss_pred             CCCeEEEcC--CC--------eEEe-cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEE-eCCCC
Q 018705          113 EKGLLKVTE--EG--------VEAI-VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLK  180 (351)
Q Consensus       113 ~~gl~~~~~--~g--------~~~l-~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~  180 (351)
                      ...+++..+  ++        .+.+ ...-+..+.|..+++|.||.-++.                  |++++. .|..+
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~  161 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG  161 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred             ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence            767777762  22        1233 222256778899999999977653                  567776 34322


Q ss_pred             eE-----EEe--ecCccccceEEEcCCCCEEEEEecceeEE
Q 018705          181 ET-----TVL--HEGFYFANGIALSKNEDFVVVCESWKRYW  214 (351)
Q Consensus       181 ~~-----~~~--~~~~~~~ngi~~~~dg~~lyv~~~~~~~~  214 (351)
                      .-     ..+  ..+.....-|.+++++. ||....+++++
T Consensus       162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~~G~ly  201 (229)
T PF14517_consen  162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKSNGKLY  201 (229)
T ss_dssp             T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-ETTEEE
T ss_pred             CCccccccceeccCCcccceEEeeCCCCc-EEEEecCCEEe
Confidence            11     111  12233455677778776 66655444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.61  E-value=2.4  Score=40.52  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             CcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEe----ecC---------------ccc
Q 018705          133 FTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVL----HEG---------------FYF  191 (351)
Q Consensus       133 ~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~----~~~---------------~~~  191 (351)
                      .+.||.++-|. .|||++..                 +|.+.+||-+. ...+.+    ..+               -..
T Consensus       313 LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             ----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             ceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence            46888899877 59999986                 57888886331 111111    111               124


Q ss_pred             cceEEEcCCCCEEEEEecc
Q 018705          192 ANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~  210 (351)
                      |+.|.+|.||++|||+++-
T Consensus       376 PqMvqlS~DGkRlYvTnSL  394 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVTNSL  394 (461)
T ss_dssp             ---EEE-TTSSEEEEE---
T ss_pred             CCeEEEccCCeEEEEEeec
Confidence            7889999999999998753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=87.51  E-value=25  Score=32.92  Aligned_cols=102  Identities=12%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C---CC
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E---EG  123 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~---~g  123 (351)
                      .|...--+++.|+ +.+.+|...-|..|.+||..+|+...-. .++.+.+.+...+.-+|.++......+++. |   +|
T Consensus       257 ~GHt~~Vs~V~w~-d~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWS-DATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEc-CCCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            4555556788998 6889999999999999999877553221 223333367777777888887766666665 4   34


Q ss_pred             ---eEEecCCCCCcccEEEccCC-cEEEEeCC
Q 018705          124 ---VEAIVPDASFTNDVIAASDG-TLYFTVAS  151 (351)
Q Consensus       124 ---~~~l~~~~~~~n~l~~d~dG-~ly~t~~~  151 (351)
                         ...+....+.+.++-..|.. ..+++.+.
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence               23344444678888888865 55665543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=87.31  E-value=34  Score=34.22  Aligned_cols=146  Identities=11%  Similarity=0.064  Sum_probs=84.0

Q ss_pred             cCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC-
Q 018705           47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-  123 (351)
Q Consensus        47 ~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g-  123 (351)
                      ..|...+-.++++...++.++.|+.|..+..||..+|+-.....  +....+..++..+.+.+.......++++  +++ 
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcc
Confidence            34555566788887436677888889999999988886543322  2222144455455555553444566666  355 


Q ss_pred             -eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCC
Q 018705          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE  201 (351)
Q Consensus       124 -~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg  201 (351)
                       ++++......++.+..+  +.+.|+.+.                 ++.|-.||+.+++.-....+ -.....+.++.. 
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----------------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-  382 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----------------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-  382 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEec-----------------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-
Confidence             45554333566777666  555555543                 45678888776654332222 223445666654 


Q ss_pred             CEEEEEecce--eEE
Q 018705          202 DFVVVCESWK--RYW  214 (351)
Q Consensus       202 ~~lyv~~~~~--~~~  214 (351)
                      +.+|-+..+.  +.|
T Consensus       383 ~~~~Sgs~D~~IkvW  397 (537)
T KOG0274|consen  383 NRLLSGSLDTTIKVW  397 (537)
T ss_pred             ceEEeeeeccceEee
Confidence            4466566555  444

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=87.06  E-value=1.3  Score=26.91  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=19.0

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILH   81 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~   81 (351)
                      .+++++  ++.+|+++.+|+++.+|.+
T Consensus        15 ~~~~v~--~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   15 SSPAVA--GGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             S--EEC--TSEEEEE-TTSEEEEEETT
T ss_pred             cCCEEE--CCEEEEEcCCCEEEEEeCC
Confidence            455774  7899999999999999975

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=87.03  E-value=12  Score=34.28  Aligned_cols=159  Identities=11%  Similarity=0.084  Sum_probs=81.0

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcCCEEEEEEc-CCCeEE-E---Eee--c--CCccccceEEcCCC--CEEEEeCCC--Ce
Q 018705           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFIL-HNETLV-N---WKH--I--DSQSLLGLTTTKDG--GVILCDNEK--GL  116 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~-~~g~~~-~---~~~--~--~~~p~~gl~~d~~G--~L~v~d~~~--gl  116 (351)
                      .+.+.-+++|++++..||+|... .|..+|. ..|+.. .   +.+  .  .+-.. .+++.|..  .+-+....+  ||
T Consensus       157 e~taAhsL~Fs~DGeqlfaGykr-cirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~~a~gsY~q~~gi  234 (406)
T KOG2919|consen  157 EYTAAHSLQFSPDGEQLFAGYKR-CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKTLAVGSYGQRVGI  234 (406)
T ss_pred             hhhhheeEEecCCCCeEeecccc-eEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcceeeecccceeee
Confidence            36678899999888899998754 4777775 334321 1   111  0  11122 45666543  233444333  33


Q ss_pred             EEEcCCC-eEEecCCCCCcccEEEccCCcEEEEeCCC-----ccCCccc------------------cc------c-ccc
Q 018705          117 LKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVAST-----KYTPTDF------------------YK------D-MAE  165 (351)
Q Consensus       117 ~~~~~~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~-----~~~~~~~------------------~~------~-~~~  165 (351)
                      +.-+..+ ..++....+.+..+...+||+-+|+-...     .+.++..                  .+      . +..
T Consensus       235 y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las  314 (406)
T KOG2919|consen  235 YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS  314 (406)
T ss_pred             EecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec
Confidence            3322233 45444434667777777777544333210     0111111                  01      1 122


Q ss_pred             ccCCceEEEEeCCC-Ce-EEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          166 GKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       166 ~~~~g~l~~~d~~~-~~-~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      |...|.|.+||.++ |+ +..+...-...||++++|--. +..+.+++
T Consensus       315 G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  315 GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             cCCCccEEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence            33456777887664 33 333332334678899988744 44444444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=86.43  E-value=23  Score=31.32  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEE-cCCCCEEEEeCCCCeEEEc
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTT-TKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~-d~~G~L~v~d~~~gl~~~~  120 (351)
                      ++-.||+++.++.+..|+.++.+|..+|++++. .....-.+ .++- .+++.++-+. ..|.+|++
T Consensus       119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~-EDGtvRvW  183 (325)
T KOG0649|consen  119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGA-EDGTVRVW  183 (325)
T ss_pred             eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecC-CCccEEEE
Confidence            778898899888878999999999999998643 32223334 4444 3556666554 45777877

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.32  E-value=29  Score=32.55  Aligned_cols=86  Identities=15%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             cccCCceEEEEeCCCCeEEEeec-C--ccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceE
Q 018705          165 EGKPYGQLRKYDPKLKETTVLHE-G--FYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNIN  238 (351)
Q Consensus       165 ~~~~~g~l~~~d~~~~~~~~~~~-~--~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~  238 (351)
                      +.+..+.|..||+..++. .+.. .  -.....+++.|+|+++|++++.+   .|.+...+.  .-.+..+..|.+..+.
T Consensus       221 t~T~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih  297 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIH  297 (412)
T ss_pred             EEecceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccCCccCCcceEE
Confidence            444567899999986543 3321 1  12234678899999999999877   455433211  1111224556678888


Q ss_pred             ECCCCCEEEEEecCC
Q 018705          239 LAPDGSFWIGLIKMN  253 (351)
Q Consensus       239 ~d~~G~lwva~~~~~  253 (351)
                      .++.+.+...++-.|
T Consensus       298 ~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  298 CHPTHPVLASCGLDR  312 (412)
T ss_pred             EcCCCceEEeeccce
Confidence            888877777766544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=86.05  E-value=15  Score=34.48  Aligned_cols=98  Identities=16%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-e-EEEE--eecCCccccceEEcCCC-CEEEEeCCCCeEEEc--C-C-C
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-T-LVNW--KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--E-E-G  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~-~~~~--~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--~-~-g  123 (351)
                      .+..+...+++..+++++...+.+.++.... + .+.+  .....+|. .+.+..+. ...|++..+..+.++  . + +
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            4555566655667788887777555543222 1 2222  12234677 88887655 577788777777766  2 2 5


Q ss_pred             -eEEecCCCCCcccEEEccCCcEEEEeCC
Q 018705          124 -VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       124 -~~~l~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                       .+.+........++++++|+.+.+|...
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDR  171 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADR  171 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecC
Confidence             4444444578899999999988777653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=9.7  Score=40.29  Aligned_cols=130  Identities=12%  Similarity=0.164  Sum_probs=65.8

Q ss_pred             CeEEEEEcCCEEEEEEcCC----CeEE---EEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC-eEEecC-CCC
Q 018705           64 GALYTATRDGWVKYFILHN----ETLV---NWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG-VEAIVP-DAS  132 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~----g~~~---~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g-~~~l~~-~~~  132 (351)
                      |.+--|..||.|..||+..    ++..   +.....+... |+.|.+.+ ++..+....|-+.++. .. .+.+.. ...
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA  159 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence            3455678899999998743    1111   2233446667 99998766 4665554455444442 22 111111 112


Q ss_pred             CcccEE-EccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EEEeecCc--cccceEEEcCCCC-EE
Q 018705          133 FTNDVI-AASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGF--YFANGIALSKNED-FV  204 (351)
Q Consensus       133 ~~n~l~-~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~--~~~ngi~~~~dg~-~l  204 (351)
                      .+.+|. ++.+.   +|+.+                 +..+|+...||.+.++ +..+.+..  ..-++++++|+.. .+
T Consensus       160 ~~~eI~~lsWNrkvqhILAS-----------------~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILAS-----------------GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             CcccceEeccchhhhHHhhc-----------------cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            333322 22221   22222                 2336778888876432 22222211  2345899999987 45


Q ss_pred             EEEecce
Q 018705          205 VVCESWK  211 (351)
Q Consensus       205 yv~~~~~  211 (351)
                      +++..+.
T Consensus       223 ~~As~dd  229 (1049)
T KOG0307|consen  223 LVASGDD  229 (1049)
T ss_pred             eeecCCC
Confidence            5554433

>smart00564 PQQ beta-propeller repeat

Probab=85.68  E-value=1.7  Score=24.85  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeE
Q 018705           62 SKGALYTATRDGWVKYFILHNETL   85 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~   85 (351)
                      .++.+|++..+|.++.+|.++|+.
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~   28 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEI   28 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcE
Confidence            367899999999999999988865

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=85.52  E-value=33  Score=33.37  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=64.4

Q ss_pred             CCEEEEEEcCCC-eEEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEcC-CC-eEEec-CC--CCCcccEEEccCC-
Q 018705           72 DGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVTE-EG-VEAIV-PD--ASFTNDVIAASDG-  143 (351)
Q Consensus        72 ~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~~-~g-~~~l~-~~--~~~~n~l~~d~dG-  143 (351)
                      .|.|..-...++ +...+....+....-+.+.+.. .|.+.....|++.++. +| -..+. ..  ..-..+||++|.. 
T Consensus       142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne  221 (673)
T KOG4378|consen  142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE  221 (673)
T ss_pred             CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence            344444444333 2234433322221134555544 3455555667777775 55 22211 11  1456789999976 


Q ss_pred             cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCcccc-ceEEEcCCCCEEEEEecce
Q 018705          144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFA-NGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~-ngi~~~~dg~~lyv~~~~~  211 (351)
                      .|+++...                 +-+|+.||-..+.. ..+..  ..| ..++|+++|.+|......+
T Consensus       222 ~l~vsVG~-----------------Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  222 ALLVSVGY-----------------DKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             ceEEEecc-----------------cceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCc
Confidence            57777665                 34799998654332 11111  122 3588999997666666555

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=85.41  E-value=2.3  Score=26.30  Aligned_cols=37  Identities=11%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             CCEEEEeCCCC-eEEEc-CCC--eEEe-cCCCCCcccEEEcc
Q 018705          105 GGVILCDNEKG-LLKVT-EEG--VEAI-VPDASFTNDVIAAS  141 (351)
Q Consensus       105 G~L~v~d~~~g-l~~~~-~~g--~~~l-~~~~~~~n~l~~d~  141 (351)
                      |+||.+|.... .+... .+|  .+++ ......|++|++|+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            46899998877 44443 466  4444 44458999999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.14  E-value=32  Score=32.43  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEe--cCCCCCcccEEEccCCcEEEEeCC
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVTE-EG-VEAI--VPDASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l--~~~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      .+++..+|.+..+-..+|.+|+.+ .. ...+  ......++|+.+++||.+.++-+.
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~  206 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA  206 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC
Confidence            567777777766665667777763 22 1111  111167999999999987776654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=84.59  E-value=27  Score=32.07  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=34.1

Q ss_pred             CCeEEEEEECCCCCcccceeEEE--EECCEEEEEecCCCeEEEEeCCCC-CC
Q 018705          298 DGKIIRDFNDPDATYISFVTSAA--EFDGNLYLASLQSNFIGILPLDGP-EP  346 (351)
Q Consensus       298 ~g~~~~~~~~~~g~~~~~~~~~~--~~~g~L~ig~~~~~~i~~~~~~~~-~~  346 (351)
                      +++.+..+..+.|    .+|-+.  +++++||.|....+.|...+++.+ .|
T Consensus       239 ~~~pl~llggh~g----GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  239 GRRPLQLLGGHGG----GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             CCCceeeecccCC----CeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            4566666665554    466655  567899999999999999999987 44

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=84.57  E-value=57  Score=34.78  Aligned_cols=143  Identities=10%  Similarity=0.180  Sum_probs=87.0

Q ss_pred             CCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcC-CCCEEEEeCCCCeEEEcC-CC--eE
Q 018705           52 NHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~-~g--~~  125 (351)
                      ..+..+.++..++.+ |....+..|.+.......... .......+. +++.|. .+++|.+|.......+.. +|  ..
T Consensus       437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~  515 (877)
T KOG1215|consen  437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK  515 (877)
T ss_pred             ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence            344555555445554 455567777777653222222 222234577 999995 458999998776655553 55  33


Q ss_pred             EecCC-CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEeecCccccceEEEcCCCC
Q 018705          126 AIVPD-ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       126 ~l~~~-~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      ++... ...|..++++| .|.+|+++....               . ++-+-..+. .....+..+...|||++++-..+
T Consensus       516 vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~---------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~  579 (877)
T KOG1215|consen  516 VLVSKDLDLPRSIAVDPEKGLMFWTDWGQP---------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD  579 (877)
T ss_pred             EEEecCCCCccceeeccccCeeEEecCCCC---------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence            33333 36899999999 478899987621               0 222222222 22233344567899999998877


Q ss_pred             EEEEEecce
Q 018705          203 FVVVCESWK  211 (351)
Q Consensus       203 ~lyv~~~~~  211 (351)
                      .+|+.+...
T Consensus       580 ~~yw~d~~~  588 (877)
T KOG1215|consen  580 RLYWADAKL  588 (877)
T ss_pred             eeEEEcccC
Confidence            899988655

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=84.30  E-value=8  Score=33.96  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe--e----cCCccccceEEcC-CCCEEEEeCCCCeEEEcC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK--H----IDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~--~----~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~  121 (351)
                      --+|.+-|..|.||--...|+||.+|+.+|......  .    ..+... ++.|+| -++|-|......-+|+++
T Consensus        29 l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRlRvvs~~GqNlR~np  102 (236)
T PF14339_consen   29 LVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRLRVVSNTGQNLRLNP  102 (236)
T ss_pred             EEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcEEEEccCCcEEEECC
Confidence            347788889999998788899999999999876551  1    123345 777775 356766554445566664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=84.22  E-value=33  Score=31.23  Aligned_cols=138  Identities=12%  Similarity=0.068  Sum_probs=79.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEecCC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPD  130 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~~~  130 (351)
                      +-.++-+++..+.|.+++-||.+..++............ +.|.+..+|-.+-.+|+++..+.+.++|. .+ ..++...
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth   93 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH   93 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec-CCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence            345788888889999999999888887644332211122 34544777877778999888777888884 55 4444444


Q ss_pred             CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce-EEEcCCCCEEEEEec
Q 018705          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG-IALSKNEDFVVVCES  209 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng-i~~~~dg~~lyv~~~  209 (351)
                      ......|.-...-...++.                 .+++.+-.||+.+...   ...+..++- -+.+-.++.|.|+..
T Consensus        94 ~~~i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~~---~~~~d~~kkVy~~~v~g~~LvVg~~  153 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKVV---VGTFDQGKKVYCMDVSGNRLVVGTS  153 (323)
T ss_pred             CCceEEEEeeccCCeEEEc-----------------ccCccEEEEecccccc---ccccccCceEEEEeccCCEEEEeec
Confidence            3444455544322233332                 3356788888763211   111111111 134445666888655


Q ss_pred             ce
Q 018705          210 WK  211 (351)
Q Consensus       210 ~~  211 (351)
                      ++
T Consensus       154 ~r  155 (323)
T KOG1036|consen  154 DR  155 (323)
T ss_pred             Cc
Confidence            55

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.00  E-value=26  Score=30.31  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---ecCccccceEEEcCCCCEEEEEe
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      .+..++..+. |.++.+...  |+             ...|.++|..+|+...-   ...-.+..||.-..|  ++|.-.
T Consensus        46 sfTQGL~~~~-g~i~esTG~--yg-------------~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LT  107 (262)
T COG3823          46 SFTQGLEYLD-GHILESTGL--YG-------------FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLT  107 (262)
T ss_pred             hhhcceeeeC-CEEEEeccc--cc-------------cceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEE
Confidence            4566666653 477777654  21             23688898887765321   112234556665544  466644


Q ss_pred             cce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705          209 SWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  286 (351)
Q Consensus       209 ~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
                      ...  .|..+..+......|  ..+|---|++.|.+ +||.+.+..                                  
T Consensus       108 w~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~d~~-~LimsdGsa----------------------------------  150 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRF--SYEGEGWGLTSDDK-NLIMSDGSA----------------------------------  150 (262)
T ss_pred             eccceeEEEChHHhhhhccc--ccCCcceeeecCCc-ceEeeCCce----------------------------------
Confidence            333  232221111111111  12232346776644 599887642                                  


Q ss_pred             CceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          287 AGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                         .+..-||++=.....++. -+|.+...+..+...+|.||.--+..++|.|++..+
T Consensus       151 ---tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         151 ---TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             ---EEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence               223334421111111111 134444555566666788888888888888887543

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=83.92  E-value=0.86  Score=27.64  Aligned_cols=19  Identities=26%  Similarity=0.522  Sum_probs=15.8

Q ss_pred             CCcccEEEccCCcEEEEeC
Q 018705          132 SFTNDVIAASDGTLYFTVA  150 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~  150 (351)
                      ..+++|++|++|++|++-.
T Consensus        13 ~~~~~IavD~~GNiYv~G~   31 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGY   31 (38)
T ss_pred             eeEEEEEECCCCCEEEEEe
Confidence            4588999999999998764

SBBP stands for Seven Bladed Beta Propeller.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=83.84  E-value=47  Score=32.74  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEecCCCCCcccEE
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l~~~~~~~n~l~  138 (351)
                      .+.+.+.+.||++..++. .|+++... ..++-.. .=+.++||.-.++....|.++++ +.|  ..+++.....+.+++
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence            345777788999988876 67775432 2223233 44556788766666677899998 588  444555546788888


Q ss_pred             EccCC-cEEEEeC
Q 018705          139 AASDG-TLYFTVA  150 (351)
Q Consensus       139 ~d~dG-~ly~t~~  150 (351)
                      .+|+- .+.++..
T Consensus       153 W~p~S~~vl~c~g  165 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG  165 (737)
T ss_pred             ECCCCCceEEecC
Confidence            99875 5665554

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=83.83  E-value=0.99  Score=33.68  Aligned_cols=18  Identities=44%  Similarity=0.580  Sum_probs=11.2

Q ss_pred             CChhhHHHHHHHHHHHHH
Q 018705            1 MAPKSFLLACLLAFTVQI   18 (351)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~   18 (351)
                      |++|++++.+++++++++
T Consensus         1 MaSK~~llL~l~LA~lLl   18 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLL   18 (95)
T ss_pred             CchhHHHHHHHHHHHHHH
Confidence            999996666555433333

Some of them may be involved in resistance to environmental stress [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.32  E-value=53  Score=32.99  Aligned_cols=124  Identities=9%  Similarity=0.064  Sum_probs=77.5

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCC-eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C---eEEecCCCCCcc
Q 018705           62 SKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G---VEAIVPDASFTN  135 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g---~~~l~~~~~~~n  135 (351)
                      ..+.+.+|+.|.+|..++-.++ ++..|.....-.. .|++.|..=..++.+..-+++++. + +   .+++.....++.
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            5677888999999999987676 4556655444455 788877766666666666777774 3 3   344544457899


Q ss_pred             cEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705          136 DVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       136 ~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      ++++-|.. +-+.+.+-.+               +=.||.+....-.. .+.......|+|.+-+-|+
T Consensus       145 qv~fnPkD~ntFaS~sLDr---------------TVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gd  196 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDR---------------TVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGD  196 (794)
T ss_pred             EEEecCCCccceeeeeccc---------------cEEEEEcCCCCCce-eeeccccCcceEEeccCCC
Confidence            99999965 5666655311               11344443221112 2234456678888877664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.28  E-value=43  Score=31.92  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             eEEEEeCCCCeEEEeecCccc--cceEEEcCCCCEEEEEecce-----------eEEee--cCCCCc-eeEEeccCCCC-
Q 018705          171 QLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCESWK-----------RYWLK--GDRAGI-LDAFIENLPGG-  233 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~~~~~--~ngi~~~~dg~~lyv~~~~~-----------~~~i~--~~~~~~-~~~~~~~~~g~-  233 (351)
                      .|+.+|..+|+..  .+.+..  ..++++.+|++.+|++....           +++..  +....+ ..+|-+.-+.. 
T Consensus       151 ~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~  228 (414)
T PF02897_consen  151 TLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW  228 (414)
T ss_dssp             EEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred             EEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence            5889999888553  233222  22399999998777765322           22222  111111 23443322111 


Q ss_pred             CCceEECCCCCE-EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC----eEEEEEECC
Q 018705          234 PDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG----KIIRDFNDP  308 (351)
Q Consensus       234 pd~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g----~~~~~~~~~  308 (351)
                      --++..+++|++ .+.....                                 .....+..++..++    .....+..+
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~---------------------------------~~~s~v~~~d~~~~~~~~~~~~~l~~~  275 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSG---------------------------------TSESEVYLLDLDDGGSPDAKPKLLSPR  275 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESS---------------------------------SSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred             EEEEEecCcccEEEEEEEcc---------------------------------ccCCeEEEEeccccCCCcCCcEEEeCC
Confidence            224667888874 4443331                                 11245777776322    123333322


Q ss_pred             CCCcccceeEEEEECCEEEEEec---CCCeEEEEeCCCCCC
Q 018705          309 DATYISFVTSAAEFDGNLYLASL---QSNFIGILPLDGPEP  346 (351)
Q Consensus       309 ~g~~~~~~~~~~~~~g~L~ig~~---~~~~i~~~~~~~~~~  346 (351)
                      ..   .....+...++.+|+-+-   ...+|.++++....+
T Consensus       276 ~~---~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~  313 (414)
T PF02897_consen  276 ED---GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP  313 (414)
T ss_dssp             SS---S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred             CC---ceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence            21   123344455888998663   346788887776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.25  E-value=58  Score=33.41  Aligned_cols=166  Identities=14%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-------CC--eEEecCC---
Q 018705           64 GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-------EG--VEAIVPD---  130 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-------~g--~~~l~~~---  130 (351)
                      ..+.+|..+|.+..+|...... +++....+-.. .|+..+|+.=+++.+....++++.       .|  .+.+.-.   
T Consensus       425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r  503 (888)
T KOG0306|consen  425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR  503 (888)
T ss_pred             ceEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence            3344455555555555433221 11111122233 455556665555555555555541       13  1222111   


Q ss_pred             -C---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-ceEEEcCCCCEEE
Q 018705          131 -A---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVV  205 (351)
Q Consensus       131 -~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngi~~~~dg~~ly  205 (351)
                       .   ..+-++.++|||.+....--                 +..+-.|-.++-+...-..+-.-| -++-+|+|++.+.
T Consensus       504 tLel~ddvL~v~~Spdgk~LaVsLL-----------------dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv  566 (888)
T KOG0306|consen  504 TLELEDDVLCVSVSPDGKLLAVSLL-----------------DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV  566 (888)
T ss_pred             EEeccccEEEEEEcCCCcEEEEEec-----------------cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence             0   44556778899976543321                 223333333333333222332223 4688999999444


Q ss_pred             EEecce--eEEeecCCCCce--eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          206 VCESWK--RYWLKGDRAGIL--DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       206 v~~~~~--~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      -++.++  ++|--  ..|..  ..|+-  ....-.+.+=++-+++.+++.
T Consensus       567 TgSADKnVKiWGL--dFGDCHKS~fAH--dDSvm~V~F~P~~~~FFt~gK  612 (888)
T KOG0306|consen  567 TGSADKNVKIWGL--DFGDCHKSFFAH--DDSVMSVQFLPKTHLFFTCGK  612 (888)
T ss_pred             eccCCCceEEecc--ccchhhhhhhcc--cCceeEEEEcccceeEEEecC
Confidence            455455  67732  33442  22321  001123445566666655543

>PHA02713 hypothetical protein; Provisional

Probab=82.38  E-value=58  Score=32.75  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=54.5

Q ss_pred             EEEEEEcCCCeEEEEeecCCccc-cceEEcCCCCEEEEeCC-------CCeEEEcC-CC-eEEecCCC-CCcccEEEccC
Q 018705           74 WVKYFILHNETLVNWKHIDSQSL-LGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAASD  142 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~-~gl~~d~~G~L~v~d~~-------~gl~~~~~-~g-~~~l~~~~-~~~n~l~~d~d  142 (351)
                      .+.++|+.++++........... .+.+. -++.||+..+.       ..+.++++ +. ...++.-. ..-..-+..-+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            47889998888766543322111 03333 36788887542       12567775 44 44433221 12222334457


Q ss_pred             CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      |.||+--....            ......+.+|||.+++.+.+.
T Consensus       352 g~IYviGG~~~------------~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        352 DTIYAIGGQNG------------TNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEECCcCC------------CCCCceEEEEECCCCeEEECC
Confidence            88998654210            001236899999988776654

>PRK13616 lipoprotein LpqB; Provisional

Probab=82.30  E-value=46  Score=33.73  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=68.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCC--CeEEEEe--------ecCCccccceEEcCCC-CEEEEeCCCCeEE---Ec
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHN--ETLVNWK--------HIDSQSLLGLTTTKDG-GVILCDNEKGLLK---VT  120 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~--g~~~~~~--------~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~---~~  120 (351)
                      ....|+|+++.+|+.....++.++...+  ++.....        ...+.+. .+++.+|| ++.+... +.++.   +.
T Consensus       400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~-g~v~Va~Vvr  477 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIG-GKVYLAVVEQ  477 (591)
T ss_pred             CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEEC-CEEEEEEEEe
Confidence            4567777667777654322343332211  1221110        1123456 88889999 4443332 23333   12


Q ss_pred             -CCC-eEE-----ecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc
Q 018705          121 -EEG-VEA-----IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA  192 (351)
Q Consensus       121 -~~g-~~~-----l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~  192 (351)
                       .+| .+.     +.... ..+.++....++.|.+....                ..-.+++++.++...+.+..+-..+
T Consensus       478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~~  541 (591)
T PRK13616        478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLSA  541 (591)
T ss_pred             CCCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCccC
Confidence             244 332     22222 23577778888887765432                1224777776643333212211123


Q ss_pred             ceEEEcCCCCEEEEEecceeEEe
Q 018705          193 NGIALSKNEDFVVVCESWKRYWL  215 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~~~~i  215 (351)
                      ..+++......+|+++..+.+.+
T Consensus       542 ~v~~vaa~~~~iyv~~~~g~~~l  564 (591)
T PRK13616        542 PVVAVAASPSTVYVTDARAVLQL  564 (591)
T ss_pred             ceEEEecCCceEEEEcCCceEEe
Confidence            33444433346888877664443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.85  E-value=39  Score=33.26  Aligned_cols=104  Identities=15%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             EEEEEcCCEEEEEEcCCCeEEEEeecCCccccc--eEEc--CCCCEEEEeCCCCeEEEcC-CC--eEEecCCCCCcccEE
Q 018705           66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLG--LTTT--KDGGVILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        66 lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~g--l~~d--~~G~L~v~d~~~gl~~~~~-~g--~~~l~~~~~~~n~l~  138 (351)
                      +.-|+..|.|+.++...|++.........+. .  ...+  .-|.+|-++....+..+.. ++  +..+......+..++
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC  151 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence            3447788999999888888765443333222 2  2222  3356666655444444443 44  333322236788999


Q ss_pred             EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc
Q 018705          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF  189 (351)
Q Consensus       139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  189 (351)
                      +.+||.+..+.+.                   .|-.||-+++++.....+.
T Consensus       152 is~D~~~l~~as~-------------------~ik~~~~~~kevv~~ftgh  183 (541)
T KOG4547|consen  152 ISPDGKILLTASR-------------------QIKVLDIETKEVVITFTGH  183 (541)
T ss_pred             EcCCCCEEEeccc-------------------eEEEEEccCceEEEEecCC
Confidence            9999988776543                   5777777777665544443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=81.60  E-value=4.3  Score=38.79  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             CceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCE
Q 018705          169 YGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  245 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~l  245 (351)
                      +|.|..|.|+..+.-+-. -.....++|+++++|.++.-+-.++  ++|=- ....+...+.  .|-...++.++..|.|
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl-R~~~ql~t~~--tp~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL-RNFYQLHTYR--TPHPASNLSLSQKGLL  348 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee-ccccccceee--cCCCccccccccccce
Confidence            577888888765432111 1123457899999997443333333  55521 1112222222  1222467788888876


Q ss_pred             EEEEe
Q 018705          246 WIGLI  250 (351)
Q Consensus       246 wva~~  250 (351)
                      =++.+
T Consensus       349 A~~~G  353 (545)
T KOG1272|consen  349 ALSYG  353 (545)
T ss_pred             eeecC
Confidence            66654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=81.25  E-value=23  Score=33.66  Aligned_cols=118  Identities=11%  Similarity=0.032  Sum_probs=69.5

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCC--eEEEEe-ecCCccccceEEcCCCCEEEEe-CCCCeE
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNE--TLVNWK-HIDSQSLLGLTTTKDGGVILCD-NEKGLL  117 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g--~~~~~~-~~~~~p~~gl~~d~~G~L~v~d-~~~gl~  117 (351)
                      ...+..+.-..-|+++|.+....+|.+.. ++.++.+|.+++  +..... ...+..+ .++|.+-+...+++ +..+.+
T Consensus       219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee-EEEeCCCCCceEEeccCCCcE
Confidence            34444554455677788777778887665 677888887643  222222 2234456 89999866544444 334555


Q ss_pred             EEc-C---CC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC
Q 018705          118 KVT-E---EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (351)
Q Consensus       118 ~~~-~---~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  178 (351)
                      ++. .   .. ...+......+..|..+|+. ++..+...                 +++|..||.+
T Consensus       298 ~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----------------D~rl~vWDls  347 (422)
T KOG0264|consen  298 ALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----------------DRRLNVWDLS  347 (422)
T ss_pred             EEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----------------CCcEEEEecc
Confidence            554 2   22 34443333567778888865 56665543                 5678888764

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.15  E-value=2.8  Score=25.19  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeEE
Q 018705           64 GALYTATRDGWVKYFILHNETLV   86 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~~   86 (351)
                      |.+|+++.+|.|+-+|.++|+..
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~   23 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVL   23 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEE
T ss_pred             CEEEEeCCCCEEEEEECCCCCEE
Confidence            57899999999999999999774

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=81.12  E-value=6.5  Score=39.15  Aligned_cols=102  Identities=9%  Similarity=0.022  Sum_probs=66.3

Q ss_pred             hccCCCccccccCCCCC-CCcCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccc
Q 018705           19 FFSLSVSSLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSL   96 (351)
Q Consensus        19 ~~~~~~~~~~~~~~~p~-~~~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~   96 (351)
                      +.-|+-|-....|++|. ..+.|++-|.+.-++-...|++-+.|-.+.+.+....|.++.+|..+++... .........
T Consensus        95 LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQ  174 (1012)
T KOG1445|consen   95 LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQ  174 (1012)
T ss_pred             hhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhh
Confidence            44566676666799995 7889988887766656678899888755555555566889999987765422 122222234


Q ss_pred             cceEEcCCCCEEEEeCC-CCeEEEcC
Q 018705           97 LGLTTTKDGGVILCDNE-KGLLKVTE  121 (351)
Q Consensus        97 ~gl~~d~~G~L~v~d~~-~gl~~~~~  121 (351)
                       ......||.|..+... ..+..+++
T Consensus       175 -Sa~WseDG~llatscKdkqirifDP  199 (1012)
T KOG1445|consen  175 -SADWSEDGKLLATSCKDKQIRIFDP  199 (1012)
T ss_pred             -ccccccCCceEeeecCCcceEEeCC
Confidence             5566678877665433 34555554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=80.53  E-value=46  Score=30.35  Aligned_cols=104  Identities=14%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CccccceEEcC-CCCEEEEeCCCCeEEEcC---CC-eEE--ecCCCCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705           93 SQSLLGLTTTK-DGGVILCDNEKGLLKVTE---EG-VEA--IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (351)
Q Consensus        93 ~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~---~g-~~~--l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  165 (351)
                      .... .|+|.+ ...+.++.+..+.+|+++   +| ..-  ......-+-+++...||+.-|+...              
T Consensus        28 DsIS-~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~--------------   92 (347)
T KOG0647|consen   28 DSIS-ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC--------------   92 (347)
T ss_pred             cchh-eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc--------------
Confidence            3445 899998 567887877777777763   34 211  1111145678889999964444332              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC-EEEEEecce---eEE
Q 018705          166 GKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCESWK---RYW  214 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~-~lyv~~~~~---~~~  214 (351)
                         ++.+-.||..++++..+...-.-...+.+-+... .+.++.++.   +||
T Consensus        93 ---Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   93 ---DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             ---CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence               4678889988888877653322222333322222 244544443   788

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-10
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		6e-10
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-09

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
           FV+V E       +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 129 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 188
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
           FV+V E       +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 189 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 235

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      +        G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 247
           FV+V E       +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-60
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	3e-28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	4e-18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	8e-14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	3e-11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	4e-11
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  196 bits (499), Expect = 1e-60
 Identities = 74/349 (21%), Positives = 115/349 (32%), Gaps = 61/349 (17%)

Query: 34  SKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS 93
           S   SS      L E     P   +   +    YT+ +DG V  +   N   V++ +   
Sbjct: 1   SLALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP 60

Query: 94  QSL-------------------LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDA 131
                                   ++   ++  + + D    L  V  EG     +    
Sbjct: 61  YWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSV 120

Query: 132 -----SFTNDV-IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL 185
                 +   V +    G +YFT  ST Y      + M      G+L KYDP  KETT+L
Sbjct: 121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180

Query: 186 HEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAP 241
            +  +   G  +S +  FV+V E       +YWL+G + G  +  +  +P  P NI    
Sbjct: 181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIP-NPGNIKRNA 238

Query: 242 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI 301
           DG FW+   +                           L   M      + +K D   G I
Sbjct: 239 DGHFWVSSSEE--------------------------LDGNMHGRVDPKGIKFDE-FGNI 271

Query: 302 IRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLAT 350
           +     P            E DG LY+ +L    +GIL  D       +
Sbjct: 272 LEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNSFVS 320

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  111 bits (279), Expect = 3e-28
 Identities = 61/374 (16%), Positives = 114/374 (30%), Gaps = 65/374 (17%)

Query: 4   KSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSK 63
                  LL   + +F     S         + +        L +G  N  ED+  ++  
Sbjct: 2   AKLTALTLLGMGLALFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDL-EILPN 60

Query: 64  GALYTATRDGWVKYFILHNET-----LVNWKHIDSQSL------------------LGLT 100
           G  + ++   +        +      L++    +                      +   
Sbjct: 61  GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF 120

Query: 101 TTKDGGVIL-------CDNEKGLLKVTEEGVEAI------VPDASFTNDVIAASDGTLYF 147
              D  V L         +   + K  EE    +             ND++A      Y 
Sbjct: 121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYA 180

Query: 148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207
           T       P     +M  G  +  +  Y P   +  V+ EGF FANGI +S +  +V + 
Sbjct: 181 TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA 238

Query: 208 ESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQK 262
           E        Y    +        + +     DNI++ P  G  W+G    +  G+R    
Sbjct: 239 ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG---CHPNGMRIFFY 294

Query: 263 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 322
             E                P GS+   R+  +   + K+   + + + T +   T AA +
Sbjct: 295 DAEN---------------PPGSEVL-RIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVY 337

Query: 323 DGNLYLASLQSNFI 336
            G L + ++    +
Sbjct: 338 KGKLLIGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 82.9 bits (205), Expect = 4e-18
 Identities = 37/230 (16%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 44  TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSL----LGL 99
               EG V        +V+          G +    L           +         G 
Sbjct: 17  IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC 76

Query: 100 TTTKDGGVILC-DNEKGLLKVTEEGVEAIVPDASF-------TNDVIAASDGTLYFTVAS 151
              +D   +   D   GLL V  +G    +             ND     +G L+ T  +
Sbjct: 77  QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT--A 134

Query: 152 TKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED----FVVVC 207
                       +  + +G +  +    +   V    F F NGIA+    D     ++V 
Sbjct: 135 PAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVA 193

Query: 208 ESWKR----YWLKGDRA----GILDAFIENLPGGPDNINLAPDGSFWIGL 249
           E+  +    Y +KG        +         GG D ++   D +  +  
Sbjct: 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 70.5 bits (173), Expect = 8e-14
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 32/172 (18%)

Query: 98  GLTTTKDGGVILCDN-----EKGLLKVTEEG------VEAIVPDASFTNDVIAASDGTLY 146
            +   KDG + +C         G+   TE G      +E +       +D++  S G  Y
Sbjct: 91  AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI-DDMVFDSKGGFY 149

Query: 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206
           FT                   P G +    P  +  T + +    ANGIALS +E  + V
Sbjct: 150 FT------DF-----RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV 198

Query: 207 CESWK----RYWLKGD-----RAGILDAFIENLPGGPDNINLAPDGSFWIGL 249
            E+      R  L+ D       G    +      GPD+  +  D + ++ +
Sbjct: 199 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 41/222 (18%), Positives = 67/222 (30%), Gaps = 31/222 (13%)

Query: 45  KLGEGCVNHPEDVSVVVS---KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT 101
              EG V  P   +V+ S   +   +  + DG +    +H     N          G   
Sbjct: 28  TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPE-MHPSHHQN----------GHCL 76

Query: 102 TKDGGVILCDNEKGLLKVTEEGVEAIVPDASFT--------NDVIAASDGTLYFTVASTK 153
            K G +I C +    L+   E        A           NDV  A DG+L+F+  +  
Sbjct: 77  NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYG 136

Query: 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES---W 210
               +         P   + +  P    +  +       NG+A   + + +V        
Sbjct: 137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPI-RDRVKPNGLAFLPSGNLLVSDTGDNAT 195

Query: 211 KRYWLKGDRAGILDA---FIENLPGGPDNINLAPDGSFWIGL 249
            RY L     G  +         PG  D + +   G  W   
Sbjct: 196 HRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 33/224 (14%)

Query: 45  KLGEGCVNHPEDVSVVVS---KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT 101
              EG        ++V S      +     DG V   +             +    G   
Sbjct: 45  TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD-----------ATAFTNGNAV 93

Query: 102 TKDGGVILCDNEKGLLKVTEE--GVEAIV------PDASFTNDVIAASDGTLYFTVASTK 153
                ++ C++ +  +  ++       +V         S  ND+I A DG ++FT     
Sbjct: 94  DAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFG 152

Query: 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRY 213
                          +  + +  P       +       NG+A S +E  + V ++ ++ 
Sbjct: 153 LRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-ADLDHPNGLAFSPDEQTLYVSQTPEQG 211

Query: 214 WLKGD------RAGILDA---FIENLPGGPDNINLAPDGSFWIG 248
               +      R G L     F     G PD   +   G  W  
Sbjct: 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS 255

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 98  GLTTTKDGGVILCDNEKG----LLKVTEEG---VEAIVPDASFTNDVIAASDGTLYFTVA 150
           GL  T +G ++           +  V  +G       +PDA F N +   SD       +
Sbjct: 76  GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS 135

Query: 151 STKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW 210
              Y    +  D+ +    G +    P L  +      F  ANG+      +F+ V  + 
Sbjct: 136 ---YRGAIWLIDVVQPS--GSIWLEHPMLARSNSES-VFPAANGLKRF--GNFLYVSNTE 187

Query: 211 K----RYWLKGD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ 254
           K    R  +    + G  + F+E      D+     +G+ +      N 
Sbjct: 188 KMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNS 234

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 31/240 (12%), Positives = 61/240 (25%), Gaps = 35/240 (14%)

Query: 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG 188
           P  +F  ++ +A DGT++ T             +       G++    P      +    
Sbjct: 29  PVNTFLENLASAPDGTIFVT-------------NH----EVGEIVSITPD-GNQQIHATV 70

Query: 189 FYFANGIALSKNEDFVVVC---ESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 245
               +G+A + N D V      +S     L      +            + I    D  +
Sbjct: 71  EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQY 130

Query: 246 WIGLIKMNQTGVRAIQKCREKWELLD----AYPGLISLLLPMG-SDAGARVVKVDGNDGK 300
                      +  + +      L                  G    G  +   +     
Sbjct: 131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190

Query: 301 IIRDFNDPDATYISFVTSAAEF---------DGNLYLASLQSNFIGILPLDGPEPQLATI 351
           ++R   D             +          +GNLY A+   N +  +  D     +A  
Sbjct: 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 56/404 (13%), Positives = 106/404 (26%), Gaps = 150/404 (37%)

Query: 4   KSFLLAC-LLAFT--VQIFFSLSVSSLASLLSISKESSSMKGLTK----------LG--- 47
            +F L+C +L  T   Q+   LS ++  + +S+   S     LT           L    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHS---MTLTPDEVKSLLLKYLDCRP 315

Query: 48  -----EGCVNHPEDVSVVVSKGAL---YTATRDGWVKYFILHNETLVNWKHIDSQSLLGL 99
                E    +P  +S++           AT D W        + L     I   SL  L
Sbjct: 316 QDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHVNC---DKL---TTIIESSLNVL 366

Query: 100 TTTK-----DGGVILCDNEK---GLLKV-----TEEGVEAIVPDASFTNDVIAASDGTLY 146
              +     D   +   +      LL +      +  V  +V         +        
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQP--- 421

Query: 147 FTVASTKYTPTDFYKDM---AEGKP---------YGQLRKYDPKLKETTVLHEGFYFANG 194
                +  +    Y ++    E +          Y   + +D    +    +   YF + 
Sbjct: 422 ---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSH 476

Query: 195 IALSKNEDFVVVCESWKRYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN 253
           I                 + LK  +    +  F          ++       ++      
Sbjct: 477 IG----------------HHLKNIEHPERMTLFRMVF------LDFR-----FLE----- 504

Query: 254 QTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF---NDPD- 309
                  QK R      +A   +++ L                   K  + +   NDP  
Sbjct: 505 -------QKIRHDSTAWNASGSILNTL----------------QQLKFYKPYICDNDPKY 541

Query: 310 ----ATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLA 349
                  + F+    E   NL      S +  +L       ++A
Sbjct: 542 ERLVNAILDFLPKIEE---NLI----CSKYTDLL-------RIA 571

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.86
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.86
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.83
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.71
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.68
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.68
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.63
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.63
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.58
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.56
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.55
3ott_A	758	Two-component system sensor histidine kinase; beta	99.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.53
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.5
3ott_A	758	Two-component system sensor histidine kinase; beta	99.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.44
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.35
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.3
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.3
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.28
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.27
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.27
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.26
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.23
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.22
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.22
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.21
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.19
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.14
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.14
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.08
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.04
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.02
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.02
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.01
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.01
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.01
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.0
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.97
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.96
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.94
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.92
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.92
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.9
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.89
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.89
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.88
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.88
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.86
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.84
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.84
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.83
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.82
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.81
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.78
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.78
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.78
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.75
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.74
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.73
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.71
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.71
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.71
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.7
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.69
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.69
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.67
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.67
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.67
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.65
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.64
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.64
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.63
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.62
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.62
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.61
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.6
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.6
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.6
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.59
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.59
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.58
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.58
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.58
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.58
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.57
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.57
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.56
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.55
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.54
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.54
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.52
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.52
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.5
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.5
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.49
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.49
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.48
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.48
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.47
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.45
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.44
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.42
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.42
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.42
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.37
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.36
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.36
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.35
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.34
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.34
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.33
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.28
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.25
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.21
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.2
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.2
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.2
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.19
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.17
2pm7_B	297	Protein transport protein SEC13, protein transport	98.17
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.12
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.11
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.1
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.1
3jro_A	753	Fusion protein of protein transport protein SEC13	98.1
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.07
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.06
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.06
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.04
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.03
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.03
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.99
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.87
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.86
2pm7_B	297	Protein transport protein SEC13, protein transport	97.86
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.83
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.82
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.81
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.73
3jro_A	753	Fusion protein of protein transport protein SEC13	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.63
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.59
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.54
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.4
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.37
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.26
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.25
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.21
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.18
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.14
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.13
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.07
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.77
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.52
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.36
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.74
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.96
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	94.67
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	93.86
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	92.88
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	90.79
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.01
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	89.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	85.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	85.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	82.9
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	82.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	82.28
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	80.58

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=3.6e-31  Score=243.88  Aligned_cols=269  Identities=25%  Similarity=0.398  Sum_probs=205.4

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec--------------------CCccccceEEcC-CCCE
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--------------------DSQSLLGLTTTK-DGGV  107 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~--------------------~~~p~~gl~~d~-~G~L  107 (351)
                      +++..||++++|+++..+|++..+++|+++++.+++++.+...                    ..+|. ||++|+ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            5578999999996544599999999999999877777766421                    24689 999997 8999


Q ss_pred             EEEeCCCCeEEEcCC-C-eEEecCC-----CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC
Q 018705          108 ILCDNEKGLLKVTEE-G-VEAIVPD-----ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       108 ~v~d~~~gl~~~~~~-g-~~~l~~~-----~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                      ||++...++++++++ + .+.+...     ...|+++++|+ +|++||+++...+....+...+.++...++|++||+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            999988889999974 5 6665432     26799999999 99999999764444433333344455668899999988


Q ss_pred             CeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCch
Q 018705          180 KETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQT  255 (351)
Q Consensus       180 ~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~  255 (351)
                      ++++.+...+..||||++++||+.|||+++.+    +|++.+...++.+.+.+ +++ |+|+++|++|+|||+....+..
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccc
Confidence            88887777788999999999999999999865    45655444455666664 667 9999999999999998653221


Q ss_pred             hhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCe
Q 018705          256 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNF  335 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~  335 (351)
                      .       |          .         ....+.|.+||+ +|+.+..+..++|.....+++++..+++||+++..+++
T Consensus       253 ~-------~----------~---------~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          253 N-------M----------H---------GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGS  305 (322)
T ss_dssp             S-------T----------T---------SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred             c-------c----------c---------CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence            1       0          0         022467999999 99999999988876566788888889999999999999


Q ss_pred             EEEEeCCCCCCC
Q 018705          336 IGILPLDGPEPQ  347 (351)
Q Consensus       336 i~~~~~~~~~~~  347 (351)
                      |.++++....+.
T Consensus       306 i~~~~~~~~~~~  317 (322)
T 2fp8_A          306 VGILVYDKKGNS  317 (322)
T ss_dssp             EEEEEC------
T ss_pred             eEEEecccccCc
Confidence            999998866553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.97  E-value=2.3e-28  Score=226.59  Aligned_cols=270  Identities=20%  Similarity=0.298  Sum_probs=192.1

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEE-------------cCCEEEEEEcCC--CeEEEEeec-------CCcccc
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTAT-------------RDGWVKYFILHN--ETLVNWKHI-------DSQSLL   97 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~-------------~~g~I~~~d~~~--g~~~~~~~~-------~~~p~~   97 (351)
                      +..+++|... ..+||+|+++ .+|.+|+++             .+|+|+++|+++  ++.+.+...       ..+|+ 
T Consensus        39 ~~~C~~i~~~-~~G~EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-  115 (355)
T 3sre_A           39 LPNCNLVKGI-DNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-  115 (355)
T ss_dssp             CSCEEECTTC-CSCCCEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-
T ss_pred             CCCCEEeCCC-CCCcceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-
Confidence            4577777442 4799999999 489999997             689999999863  455544332       24899 


Q ss_pred             ceEEcC--CC--CEEEEeCCCC-----eEEEcCCC-eEEec----CC-CCCcccEEEccCCcEEEEeCCCccCCccc-cc
Q 018705           98 GLTTTK--DG--GVILCDNEKG-----LLKVTEEG-VEAIV----PD-ASFTNDVIAASDGTLYFTVASTKYTPTDF-YK  161 (351)
Q Consensus        98 gl~~d~--~G--~L~v~d~~~g-----l~~~~~~g-~~~l~----~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~-~~  161 (351)
                      ||.+.+  +|  +|||+++..+     ++++++++ ...+.    .. .+.|||++++++|++|++++.. |..... ..
T Consensus       116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~  194 (355)
T 3sre_A          116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSW  194 (355)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHH
T ss_pred             eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccc
Confidence            999854  45  6999998753     78888754 32222    11 3899999999999999998742 111000 01


Q ss_pred             ccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeec-CCCCceeEEeccCCCCCCc
Q 018705          162 DMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKG-DRAGILDAFIENLPGGPDN  236 (351)
Q Consensus       162 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~-~~~~~~~~~~~~~~g~pd~  236 (351)
                      +.+.+.+.|+||+|++.  +++.+.+++..||||++|||+++||++++..    +|++.. ...+..+.+  ..++.|||
T Consensus       195 e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDG  270 (355)
T 3sre_A          195 EMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDN  270 (355)
T ss_dssp             HHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEE
T ss_pred             hhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCce
Confidence            12234567899999984  6777888899999999999999999999876    566653 223334455  35789999


Q ss_pred             eEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEEC---CCCeEEEEEECCCCCc
Q 018705          237 INLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG---NDGKIIRDFNDPDATY  312 (351)
Q Consensus       237 i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~g~~~~~~~~~~g~~  312 (351)
                      +++|+ +|+||+|........+.+   .          |..         .....|.++..   +++++.+.|.+ +|..
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~---~----------P~~---------~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~  327 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFY---D----------AEN---------PPGSEVLRIQDILSEEPKVTVVYAE-NGTV  327 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSC---C----------TTS---------CCCEEEEEEECTTSSSCEEEEEEEE-CSSS
T ss_pred             EEEeCCCCcEEEEecCCceEEEEE---C----------CCC---------CCCCEEEEEEccCCCCcEEEEEEEc-CCCE
Confidence            99999 599999876422121111   1          110         22356888873   28898889988 8888


Q ss_pred             ccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          313 ISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       313 ~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                      ....|.+...+|+||||+...+ +..|++
T Consensus       328 l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          328 LQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             CCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            8899999999999999999777 777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.3e-26  Score=206.75  Aligned_cols=250  Identities=16%  Similarity=0.217  Sum_probs=186.9

Q ss_pred             cCceEecCCCcCCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEE
Q 018705           41 KGLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLK  118 (351)
Q Consensus        41 ~~~~~i~~~~~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~  118 (351)
                      ..+|++..+ +..+|+++++++++ .+|++..+++|+++++ +++.+.+......|. ++++|++|+||+++.. .++.+
T Consensus        35 ~~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           35 ARLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CCCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEE
T ss_pred             CceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEE
Confidence            456778777 67899999997776 5677888999999998 677777777778899 9999999999999876 57888


Q ss_pred             EcCCC-eEEecCC-----CCCcccEEEccCCcEEEEeCCCccCCccccc--ccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705          119 VTEEG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYK--DMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (351)
Q Consensus       119 ~~~~g-~~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  190 (351)
                      ++++| .+.+...     .+.||+++++++|++||||+.  |+......  ........++|+++|+++++++.+. .+.
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~  188 (305)
T 3dr2_A          112 SDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD  188 (305)
T ss_dssp             ECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred             ECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence            88778 6665432     167999999999999999864  11100000  0001122468999999888887776 778


Q ss_pred             ccceEEEcCCCCEEEEEecc------e---eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhh
Q 018705          191 FANGIALSKNEDFVVVCESW------K---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQ  261 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~------~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~  261 (351)
                      .|||+++++|++.||++++.      +   +|.+.+......+.+.+...+.|+++++|++|+||+++.           
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-----------  257 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-----------  257 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-----------
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-----------
Confidence            89999999999999999875      3   344443222233455544467899999999999999862           


Q ss_pred             cChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEE
Q 018705          262 KCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGIL  339 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~  339 (351)
                                                 .+|.+|++ +|+.+..+..+++     +++++.  +++.||+++.  .+++++
T Consensus       258 ---------------------------~gv~~~~~-~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~  302 (305)
T 3dr2_A          258 ---------------------------TGVCVFDS-DGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWML  302 (305)
T ss_dssp             ---------------------------SEEEEECT-TSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEE
T ss_pred             ---------------------------CcEEEECC-CCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEE
Confidence                                       26999999 9999999987652     445554  4568999994  789998


Q ss_pred             eCC
Q 018705          340 PLD  342 (351)
Q Consensus       340 ~~~  342 (351)
                      +++
T Consensus       303 ~~~  305 (305)
T 3dr2_A          303 PLP  305 (305)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.93  E-value=9.7e-24  Score=191.27  Aligned_cols=249  Identities=18%  Similarity=0.233  Sum_probs=182.3

Q ss_pred             CceEecCCCcCCCceEEEeeCCC-eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC-CCeEEE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKV  119 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~  119 (351)
                      .++.+..+ ...||++++|++++ .+|++..+++|+++++.++ .+.+......|. +++++++|+||+++.. .+++++
T Consensus        19 ~~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           19 EARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEE
T ss_pred             cEEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEE
Confidence            44666665 67899999997776 5778888999999999777 777766667789 9999999999999976 578888


Q ss_pred             cC-CC-eEEecCC-----CCCcccEEEccCCcEEEEeCCCccCCcccc--cccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705          120 TE-EG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFY--KDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (351)
Q Consensus       120 ~~-~g-~~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  190 (351)
                      ++ +| .+.+...     ...|+++++|++|++|++++.  ++.....  .........++|++++++ ++.+.+...+.
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence            86 77 6555322     157999999999999999863  1000000  000011124689999997 77777777888


Q ss_pred             ccceEEEcCCCCEEEEEecce-e---EEee-cCCC-CceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          191 FANGIALSKNEDFVVVCESWK-R---YWLK-GDRA-GILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~-~---~~i~-~~~~-~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      .|+|+++++||+.+ ++++.. +   +.+. +... ...+.+ ....+.|+++++|++|+||+++ .             
T Consensus       173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~-------------  236 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G-------------  236 (296)
T ss_dssp             SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T-------------
T ss_pred             CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C-------------
Confidence            99999999999977 877654 3   3333 1112 223444 4445679999999999999997 2             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE---CCEEEEEecCCCeEEEEeC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~ig~~~~~~i~~~~~  341 (351)
                                              ++|.+||+ +|+.+..+..+.+     +++++..   ++.||+++.  +++.++++
T Consensus       237 ------------------------~~v~~~~~-~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~  284 (296)
T 3e5z_A          237 ------------------------DGVHVLTP-DGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIET  284 (296)
T ss_dssp             ------------------------TEEEEECT-TSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEEC
T ss_pred             ------------------------CeEEEECC-CCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEc
Confidence                                    36999999 8999988876653     4455542   357999994  78999997


Q ss_pred             CCC
Q 018705          342 DGP  344 (351)
Q Consensus       342 ~~~  344 (351)
                      .+.
T Consensus       285 ~~~  287 (296)
T 3e5z_A          285 NVR  287 (296)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.91  E-value=2.8e-22  Score=182.35  Aligned_cols=239  Identities=13%  Similarity=0.131  Sum_probs=172.6

Q ss_pred             eEecCCCcCCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-  121 (351)
                      +.+.......+|+++|+++++.+ |++..+++|+++|+++++.+.+. ....|. +++++++|+||++. ..++++++. 
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVS-SVALRQSGGYVATI-GTKFCALNWK   81 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEE-EEEEBTTSSEEEEE-TTEEEEEETT
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceE-EEEECCCCCEEEEE-CCeEEEEECC
Confidence            44444446789999999766655 56667899999999888776553 346788 99999999999998 568999996 


Q ss_pred             CC-eEEecCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceE
Q 018705          122 EG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI  195 (351)
Q Consensus       122 ~g-~~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi  195 (351)
                      ++ .+.+...     ...+|++++|++|++|++++.....      ........+.|++++++ ++...+...+..|||+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGL  154 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEE
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccce
Confidence            56 6555432     2579999999999999988541100      00011235689999986 5666667778889999


Q ss_pred             EEcCCCCEEEEEecce-eEEeec--CCCCc---eeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705          196 ALSKNEDFVVVCESWK-RYWLKG--DRAGI---LDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~-~~~i~~--~~~~~---~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      ++++|++.||++++.. +++.-+  ...+.   .+.+..  ...+.|+++++|++|+||++....               
T Consensus       155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~---------------  219 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG---------------  219 (297)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT---------------
T ss_pred             EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC---------------
Confidence            9999999999999765 443321  12222   234432  234679999999999999998642               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEecC
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQ  332 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~~  332 (351)
                                           +.|.+||+++|+.+..+..|.    ..++++++.+   ++||+++..
T Consensus       220 ---------------------~~v~~~d~~tG~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          220 ---------------------GRVIRLDPVTGKRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ---------------------TEEEEECTTTCCEEEEEECSS----SBEEEEEEESGGGCEEEEEEBC
T ss_pred             ---------------------CEEEEEcCCCceEEEEEECCC----CCceEEEEeCCCCCEEEEEcCC
Confidence                                 369999994499998887663    2467777653   689999964

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.90  E-value=2.4e-21  Score=176.07  Aligned_cols=253  Identities=19%  Similarity=0.274  Sum_probs=179.1

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEE--------EcCCEEEEEEcCCCeEEEEee-----cCCccccceEEcCC-CCEEE
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTA--------TRDGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKD-GGVIL  109 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~--------~~~g~I~~~d~~~g~~~~~~~-----~~~~p~~gl~~d~~-G~L~v  109 (351)
                      +.+..+ +..|++++++ .++.+|++        ..+++|+++++.+++++.+..     ....|. ++++|++ |+||+
T Consensus        11 ~~~~~~-~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           11 TKVTED-IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             EEEECC-CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             hhhhcc-CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            445544 7899999999 67778877        678899999987888876643     335688 9999999 99999


Q ss_pred             EeCCCCeEEEcCCC-eEEe-cCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE
Q 018705          110 CDNEKGLLKVTEEG-VEAI-VPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET  182 (351)
Q Consensus       110 ~d~~~gl~~~~~~g-~~~l-~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  182 (351)
                      ++...++++++.+| .+.+ ...     ...|+++++|++|++|+++.........+.  .......++|++++++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--ccccCCCCeEEEECCC-CCE
Confidence            99877899998668 6655 321     156999999999999999864210000000  0011234689999987 777


Q ss_pred             EEeecCccccceEEEc----CCCCEEEEEecce----eEEeec-CCCCceeEEeccCC----CCCCceEECCCCCEEEEE
Q 018705          183 TVLHEGFYFANGIALS----KNEDFVVVCESWK----RYWLKG-DRAGILDAFIENLP----GGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       183 ~~~~~~~~~~ngi~~~----~dg~~lyv~~~~~----~~~i~~-~~~~~~~~~~~~~~----g~pd~i~~d~~G~lwva~  249 (351)
                      +.+......|++++++    ++++.+|+++...    ++.... ......+.+.. .+    +.|+++++|++|++|++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEE
Confidence            6666666789999999    9998899998654    333331 11111223321 22    568899999999999997


Q ss_pred             ecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC-CeEEEEEECCCCCcccceeEEEEE-CC-EE
Q 018705          250 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND-GKIIRDFNDPDATYISFVTSAAEF-DG-NL  326 (351)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L  326 (351)
                      ...                                    ++|.++|+ + |+.+..+..+.    ..++++... +| .|
T Consensus       244 ~~~------------------------------------~~i~~~d~-~~g~~~~~~~~~~----~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          244 WGS------------------------------------SHIEVFGP-DGGQPKMRIRCPF----EKPSNLHFKPQTKTI  282 (314)
T ss_dssp             ETT------------------------------------TEEEEECT-TCBSCSEEEECSS----SCEEEEEECTTSSEE
T ss_pred             cCC------------------------------------CEEEEEcC-CCCcEeEEEeCCC----CCceeEEECCCCCEE
Confidence            531                                    36999999 6 88777776543    246666654 34 49


Q ss_pred             EEEecCCCeEEEEeCCCC
Q 018705          327 YLASLQSNFIGILPLDGP  344 (351)
Q Consensus       327 ~ig~~~~~~i~~~~~~~~  344 (351)
                      |+++...++|.++++...
T Consensus       283 ~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          283 FVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEETTTTEEEEEECSSC
T ss_pred             EEEeCCCCeEEEEeCCCC
Confidence            999987889999997643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=8.8e-19  Score=157.47  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=169.0

Q ss_pred             CCcCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEeec------CCccccceEE-cCCCCEEEEeC--CCCeEE
Q 018705           49 GCVNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHI------DSQSLLGLTT-TKDGGVILCDN--EKGLLK  118 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~~------~~~p~~gl~~-d~~G~L~v~d~--~~gl~~  118 (351)
                      +++..|.+++++ .++.+|++ ..+++|.+++++......+...      ...|. ++++ +++|+||+++.  ...+.+
T Consensus        27 g~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEEC-CCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEE
Confidence            457889999999 46678876 4678999999854434444321      14688 9999 58999999995  456777


Q ss_pred             EcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccc
Q 018705          119 VTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFAN  193 (351)
Q Consensus       119 ~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~n  193 (351)
                      ++++|  .+.+... ...|++++++++|++|+++..                 .++|++||+++.....+.  ..+..|+
T Consensus       105 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          105 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred             ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence            87777  4445332 367999999999999999865                 468999998755444443  3456799


Q ss_pred             eEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHH
Q 018705          194 GIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  271 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      +|+++++|+ +|+++... ++.+-+........+.. .....|.++++|++|++|++....                   
T Consensus       168 ~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~-------------------  227 (286)
T 1q7f_A          168 GVVVNDKQE-IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-------------------  227 (286)
T ss_dssp             EEEECSSSE-EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-------------------
T ss_pred             EEEECCCCC-EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC-------------------
Confidence            999999997 99998755 43332222222222321 111368899999999999997531                   


Q ss_pred             hccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          272 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                                      ...|.+|++ +|+.+..+.....  ...+.++... +|+||+++. .+.|.++++....|
T Consensus       228 ----------------~~~i~~~~~-~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          228 ----------------NFNLTIFTQ-DGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQLAP  283 (286)
T ss_dssp             ----------------SCEEEEECT-TSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSCCCC
T ss_pred             ----------------CEEEEEECC-CCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEcccccc
Confidence                            126899999 9998888864322  2235566654 689999975 78999999877666

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.86  E-value=4.4e-19  Score=161.95  Aligned_cols=225  Identities=17%  Similarity=0.222  Sum_probs=158.3

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCC-C--eEE
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-G--LLK  118 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-g--l~~  118 (351)
                      +..+..+  ..||++++++ ++.+|+.. .+++|+++|++ ++...+......|. +++++++|+||+++... +  +++
T Consensus        25 ~~~~p~~--~~pegia~~~-~g~lyv~d~~~~~I~~~d~~-g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           25 ITSFPVN--TFLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEECTT--CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeCCCC--CCcceEEECC-CCCEEEEeCCCCeEEEECCC-CceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEE
Confidence            3444444  5799999995 66677765 68899999985 44544445567899 99999999999999542 3  788


Q ss_pred             Ec-CCC-eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe---------
Q 018705          119 VT-EEG-VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---------  185 (351)
Q Consensus       119 ~~-~~g-~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---------  185 (351)
                      ++ ++| .+.+...  ..++++++..+++.+|+++..                 .++||++|+.+++.+..         
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccc
Confidence            87 477 6555432  267888888888889999864                 46899999876543322         


Q ss_pred             --ecCccccceEEEcCCCCEEEEEecce----eEEeec-CCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhh
Q 018705          186 --HEGFYFANGIALSKNEDFVVVCESWK----RYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVR  258 (351)
Q Consensus       186 --~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~-~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~  258 (351)
                        ...+..||||  ++|++.||++++.+    +|.+.. ...+..+.+.. . ..|+++++|++|+|||+....      
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~~------  232 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHIY------  232 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBTT------
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCCC------
Confidence              1245689998  88888999999876    344432 22333445543 2 469999999999999997531      


Q ss_pred             hhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-----CCEEEEEecC
Q 018705          259 AIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-----DGNLYLASLQ  332 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-----~g~L~ig~~~  332 (351)
                                                    +.|.+|++ +|+.......+.+  ...+++++..     +++||+++..
T Consensus       233 ------------------------------~~V~~~~~-~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          233 ------------------------------NSVVRIAP-DRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ------------------------------CCEEEECT-TCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ------------------------------CeEEEECC-CCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCC
Confidence                                          35899999 8986443222222  3457777764     3799999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.86  E-value=3.8e-19  Score=170.28  Aligned_cols=237  Identities=13%  Similarity=0.127  Sum_probs=172.1

Q ss_pred             CcCCCceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC-----CCeEEEcCC
Q 018705           50 CVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-----KGLLKVTEE  122 (351)
Q Consensus        50 ~~~~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~-----~gl~~~~~~  122 (351)
                      ++..|++|++|++  ++.||+....++|+++++.++++..+......|. ++++|++|+||+++..     .+++.+.++
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            6789999999963  6899998766889999998898887766667799 9999999999999973     256767653


Q ss_pred             C--e--EEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeec--Cccccce
Q 018705          123 G--V--EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHE--GFYFANG  194 (351)
Q Consensus       123 g--~--~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~--~~~~~ng  194 (351)
                      +  .  ..+. ....|+++++|+ +|+|||++..                 .++|++|+++++++ +.+..  ....+.+
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            3  2  2333 237899999999 8999999975                 46899999987776 33322  2234668


Q ss_pred             EEEcCCCCEEEEEecce-eEEeec--C---CCCceeEEecc--CCC------------CCCceEE---------CCCCCE
Q 018705          195 IALSKNEDFVVVCESWK-RYWLKG--D---RAGILDAFIEN--LPG------------GPDNINL---------APDGSF  245 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~-~~~i~~--~---~~~~~~~~~~~--~~g------------~pd~i~~---------d~~G~l  245 (351)
                      |+++++|+.|||++..+ +++..+  .   .......++..  ..+            .|.++++         |++|+|
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            99999999999999876 544321  1   11122233321  112            3677999         999999


Q ss_pred             EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC--------CC-----Cc
Q 018705          246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP--------DA-----TY  312 (351)
Q Consensus       246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--------~g-----~~  312 (351)
                      ||+...                                    ...|.+|++ +|++.......        +|     ..
T Consensus       358 yvaD~~------------------------------------n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~  400 (433)
T 4hw6_A          358 YFCDRD------------------------------------SHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQAL  400 (433)
T ss_dssp             EEEETT------------------------------------TTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCB
T ss_pred             EEEECC------------------------------------CCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccE
Confidence            999753                                    236889999 99765444221        11     12


Q ss_pred             ccceeEEEEE--CCEEEEEecCCCeEEEEeCC
Q 018705          313 ISFVTSAAEF--DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       313 ~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~  342 (351)
                      +..+.+++.+  +|.||++...+.+|.++.+.
T Consensus       401 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          401 FNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             eCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4457788866  79999999999999998864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.86  E-value=3.5e-19  Score=164.08  Aligned_cols=235  Identities=17%  Similarity=0.182  Sum_probs=170.3

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      .+|.+.......+|+++++++++.+ |++..+++|+++++++++.+.+.. ...+. +++++++|++|++. ..++++++
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~-~i~~~~dg~l~v~~-~~gl~~~d  115 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIAS-DDGLFLRD  115 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEE-TTEEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CCcce-EEEEeCCCeEEEEE-CCCEEEEE
Confidence            4677777656679999999766654 566678899999998887766543 35677 99999999999998 45799999


Q ss_pred             C-CC-eEEecCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccc
Q 018705          121 E-EG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN  193 (351)
Q Consensus       121 ~-~g-~~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n  193 (351)
                      . +| .+.+...     ...++++++|++|++|+++....           .....++|++++  +++.+.+......++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~~~~~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPN  182 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe--CCcEEEeeCCCcccC
Confidence            5 66 6555332     14689999999999999875310           011246899999  477776666667899


Q ss_pred             eEEEcCCCCEEEEEecce-eEEeecC--CCC----ceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          194 GIALSKNEDFVVVCESWK-RYWLKGD--RAG----ILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~-~~~i~~~--~~~----~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      ++++++|++.+|++++.. ++++-+.  ..+    ..+.+..  ...+.|+++++|++|+||+++...            
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~------------  250 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE------------  250 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT------------
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC------------
Confidence            999999999999998754 4433221  122    2233332  234578999999999999997531            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE---CCEEEEEecCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASLQS  333 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~ig~~~~  333 (351)
                                              ++|.++|+ +|+.+..+..+..    .++++...   ++.||+++...
T Consensus       251 ------------------------~~v~~~d~-~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          251 ------------------------GAVDRYDT-DGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ------------------------TEEEEECT-TCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCT
T ss_pred             ------------------------CEEEEECC-CCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCC
Confidence                                    36999999 9998888876542    46777764   36899998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.85  E-value=2.9e-19  Score=158.86  Aligned_cols=234  Identities=17%  Similarity=0.159  Sum_probs=162.0

Q ss_pred             CCceEEEeeCCCeEEE-E-EcCCEEEEEEcCCCeEEEEeec-CCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEe
Q 018705           53 HPEDVSVVVSKGALYT-A-TRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv-~-~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l  127 (351)
                      .|+++++| .+|.+|+ + ..+++|.+++..++....+... ...|. ++++|++|+||+++..++++++++++  ...+
T Consensus        25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeee
Confidence            89999999 4667888 7 4578999999755544433222 25688 99999999999999856788888755  4444


Q ss_pred             cCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCCEEE
Q 018705          128 VPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       128 ~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~~ly  205 (351)
                      ... ...|++++++++|++|+++..                 .++|++++..+...... ...+..|++|+++++|+ +|
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  164 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY  164 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence            322 367999999999999999864                 46899998765443332 23456899999999998 99


Q ss_pred             EEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCC
Q 018705          206 VCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  284 (351)
Q Consensus       206 v~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
                      +++... ++..-+................|.++++|++|++|++....                                
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~--------------------------------  212 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT--------------------------------  212 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT--------------------------------
T ss_pred             EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC--------------------------------
Confidence            998755 44333322222221111111458899999999999997531                                


Q ss_pred             CCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          285 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       285 ~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                          +.|.++++ +++....+.. .+  ...+.++..+ +|+||++...++.|.++++...+.
T Consensus       213 ----~~v~~~~~-~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          213 ----NQVVKLLA-GSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             ----SCEEEECT-TCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ----CcEEEEcC-CCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence                35889999 7765433321 12  2456777765 578999999999999999876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=5e-19  Score=162.44  Aligned_cols=242  Identities=20%  Similarity=0.250  Sum_probs=170.5

Q ss_pred             cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCC-----CeEEEcCC-
Q 018705           51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEK-----GLLKVTEE-  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~-----gl~~~~~~-  122 (351)
                      ...|+++++++ +|.+|+ +..+++|+++|+++++++.+. .....|. +++++++|+||+++...     ++++++.+ 
T Consensus        44 ~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           44 GLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             CCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence            56799999995 556765 667889999999888877654 3446788 99999999999998765     78888864 


Q ss_pred             C-eE-EecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEc
Q 018705          123 G-VE-AIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS  198 (351)
Q Consensus       123 g-~~-~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~  198 (351)
                      + .+ .+...  ...+++++++++|++|+++....           .....++|+++|+++++.+.+......+++++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  190 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  190 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEEC
Confidence            4 44 33321  26799999999999999986310           0112468999999877777666666779999999


Q ss_pred             CCCCEEEEEecce----eEEeecCCCCce-----eEEeccCC--CCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705          199 KNEDFVVVCESWK----RYWLKGDRAGIL-----DAFIENLP--GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       199 ~dg~~lyv~~~~~----~~~i~~~~~~~~-----~~~~~~~~--g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      +||+.+|+++...    ++.+... ....     +.+. ..+  ..|+++++|++|++|+++...               
T Consensus       191 ~dg~~l~v~~~~~~~i~~~d~~~~-g~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~---------------  253 (333)
T 2dg1_A          191 TDEKVLWVTETTANRLHRIALEDD-GVTIQPFGATIPY-YFTGHEGPDSCCIDSDDNLYVAMYGQ---------------  253 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTT-SSSEEEEEEEEEE-ECCSSSEEEEEEEBTTCCEEEEEETT---------------
T ss_pred             CCCCEEEEEeCCCCeEEEEEecCC-CcCcccccceEEE-ecCCCCCCCceEECCCCCEEEEEcCC---------------
Confidence            9999899988644    3333211 1111     1111 112  368899999999999997531               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC--cccceeEEEEE--CCEEEEEecCC-----CeEEE
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT--YISFVTSAAEF--DGNLYLASLQS-----NFIGI  338 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~--~g~L~ig~~~~-----~~i~~  338 (351)
                                           ++|.++|+ +|+.+..+..+...  ....+++++..  +++||+++..+     ..|.+
T Consensus       254 ---------------------~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~  311 (333)
T 2dg1_A          254 ---------------------GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYT  311 (333)
T ss_dssp             ---------------------TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEE
T ss_pred             ---------------------CEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEE
Confidence                                 36899999 99988888754320  01135556553  35899998753     37888


Q ss_pred             EeCCCC
Q 018705          339 LPLDGP  344 (351)
Q Consensus       339 ~~~~~~  344 (351)
                      +++...
T Consensus       312 ~~~~~~  317 (333)
T 2dg1_A          312 VNGFAK  317 (333)
T ss_dssp             EECSSC
T ss_pred             EecccC
Confidence            886543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.84  E-value=6.8e-18  Score=151.64  Aligned_cols=229  Identities=17%  Similarity=0.283  Sum_probs=168.0

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEee--cCCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eE
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~  125 (351)
                      ...|.++++| .+|.+|++.. +++|.++++. +++..+..  ....|. ++++|++|++|+++.. ++++++++++ .+
T Consensus        14 ~~~~~~i~~d-~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           14 DTGPYGITVS-DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIK   90 (299)
T ss_dssp             SCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCccceEEC-CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEE
Confidence            5689999999 6788999886 6889999986 77766542  245688 9999999999999874 4588888777 55


Q ss_pred             EecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEcCCC
Q 018705          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg  201 (351)
                      .+..  ....|++++++++|++|+++..                 .++|+++|+ +++...+.  .....|++++++++|
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g  152 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN  152 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence            5432  2368999999999999999864                 368999998 56665443  235679999999999


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEe-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      + +|+++... .+..-+. .++...+. ......|.++++|++|++|++...                            
T Consensus       153 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----------------------------  202 (299)
T 2z2n_A          153 A-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----------------------------  202 (299)
T ss_dssp             C-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----------------------------
T ss_pred             C-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----------------------------
Confidence            7 99988654 4333333 34444331 111235778999999999999743                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~  342 (351)
                              .+.|.++++ +++.. .+..+..  ...+.++..+ +|+||+++...++|.+++..
T Consensus       203 --------~~~i~~~~~-~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          203 --------GNKIGRITT-SGEIT-EFKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             --------TTEEEEECT-TCCEE-EEECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             --------CceEEEECC-CCcEE-EEECCCC--CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence                    136899999 88854 3544322  3456777765 68999999878999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.84  E-value=5.5e-18  Score=152.21  Aligned_cols=229  Identities=13%  Similarity=0.171  Sum_probs=165.1

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEee--cCCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eE
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~  125 (351)
                      ...|.++++| .+|.+|++.. +++|++++++ ++++.+..  ....|. ++++|++|+||+++.. .+++++++++ ..
T Consensus        56 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  132 (299)
T 2z2n_A           56 DAKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIR  132 (299)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred             cCceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence            3578999999 5778888876 6889999984 76666543  345788 9999999999999864 5688888876 54


Q ss_pred             EecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCC
Q 018705          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg  201 (351)
                      .+..  ....|++++++++|++|+++..                 .+.|+++|+ +++...+  ......|++|+++++|
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  194 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD  194 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC
Confidence            4432  2367999999999999998864                 368999999 6776654  2345678999999999


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      + +|+++... .+..-+. .++...+... ....|.++++|++|++|++...                            
T Consensus       195 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----------------------------  244 (299)
T 2z2n_A          195 A-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG----------------------------  244 (299)
T ss_dssp             S-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT----------------------------
T ss_pred             C-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC----------------------------
Confidence            8 99988644 3333333 3444333211 1235788999999999999743                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                              .++|.++|+ +|+. ..+..+.+  ...+.++...+|+||+++. .+++.+++..+
T Consensus       245 --------~~~i~~~d~-~g~~-~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          245 --------ANKIGRLTS-NNII-EEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             --------TTEEEEEET-TTEE-EEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEEC-
T ss_pred             --------CceEEEECC-CCce-EEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEcCc
Confidence                    136999999 8864 45544432  2345655557789999987 68999998765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.2e-18  Score=164.93  Aligned_cols=237  Identities=12%  Similarity=0.100  Sum_probs=170.2

Q ss_pred             CcCCCceEEEee-CCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC-----CeEEEcCC
Q 018705           50 CVNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-----GLLKVTEE  122 (351)
Q Consensus        50 ~~~~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~-----gl~~~~~~  122 (351)
                      ++..|.++++|| +++.||+....++|.++|+++++++.+......|. +|++|++|+ ||+++...     .++.++++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            477999999997 47899998777899999997778877766667899 999999998 99999743     34555555


Q ss_pred             C-e---EEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceE
Q 018705          123 G-V---EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGI  195 (351)
Q Consensus       123 g-~---~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi  195 (351)
                      | .   ..+.. ...|+++++++ +|.||+++..                 .++|++|++++++...+.  .....|+||
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            5 2   33332 37899999999 8999999975                 468999999877663332  234579999


Q ss_pred             EEcCCCCEEEEEecce-eEEe---ecC--CCCceeEEecc--CC------------CCCC-ceEE--------CCCCCEE
Q 018705          196 ALSKNEDFVVVCESWK-RYWL---KGD--RAGILDAFIEN--LP------------GGPD-NINL--------APDGSFW  246 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~-~~~i---~~~--~~~~~~~~~~~--~~------------g~pd-~i~~--------d~~G~lw  246 (351)
                      +++++|++||+++..+ +++.   .+.  .......++..  ..            ..|. ++++        |++|+||
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly  355 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY  355 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence            9999999999999876 4333   321  01111222211  11            1355 6776        5679999


Q ss_pred             EEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC--------CC-----Ccc
Q 018705          247 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP--------DA-----TYI  313 (351)
Q Consensus       247 va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--------~g-----~~~  313 (351)
                      ++...                                    ...|.+|++ +|++.......        +|     ..+
T Consensus       356 vaD~~------------------------------------n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~  398 (430)
T 3tc9_A          356 FCDRE------------------------------------NHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARF  398 (430)
T ss_dssp             EEEGG------------------------------------GTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBC
T ss_pred             EEECC------------------------------------CcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEe
Confidence            99753                                    136889999 99866555321        11     114


Q ss_pred             cceeEEEEE--CCEEEEEecCCCeEEEEeCC
Q 018705          314 SFVTSAAEF--DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       314 ~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~  342 (351)
                      ..+..++.+  +|.||++...+.+|.++++.
T Consensus       399 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          399 NHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            467788876  58999999999999998753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.83  E-value=1.5e-17  Score=149.45  Aligned_cols=229  Identities=14%  Similarity=0.224  Sum_probs=167.9

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeec--CCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eE
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~  125 (351)
                      ...|.++++| .+|.+|++.. +++|.++++. +++..+...  ...|. ++++|++|++|+++.. .++++++++| .+
T Consensus        19 ~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           19 DSGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeE
Confidence            5789999999 5788998874 7899999986 777665432  25688 9999999999999975 4588888767 55


Q ss_pred             EecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEcCCC
Q 018705          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg  201 (351)
                      .+..  ....|++++++++|++|+++..                 .+.|+++|++ ++...+.  .....|++++++++|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g  157 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN  157 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence            4432  2267999999999999999864                 3589999998 6665432  235689999999999


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      + +|+++... .++.-+. .++...+.. .....|.++++|++|++|++...                            
T Consensus       158 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----------------------------  207 (300)
T 2qc5_A          158 A-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----------------------------  207 (300)
T ss_dssp             S-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----------------------------
T ss_pred             C-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----------------------------
Confidence            8 99998754 4433333 334333321 11235788999999999999753                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~  342 (351)
                              .+.|.++++ +|+... +..+.+  ...+.+++.+ +|+||+++...++|.+++..
T Consensus       208 --------~~~i~~~~~-~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          208 --------GNKIGRITT-TGEISE-YDIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             --------TTEEEEECT-TCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             --------CCEEEEEcC-CCcEEE-EECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence                    136899999 888654 333322  3356677765 68899999888999999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.83  E-value=6e-18  Score=152.07  Aligned_cols=227  Identities=15%  Similarity=0.176  Sum_probs=164.6

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEee--cCCccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eE
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~  125 (351)
                      ...|.++++| .++.+|++.. +++|+++|++ ++.+.+..  ....|. ++++|++|++|+++.. .++++++++| ..
T Consensus        61 ~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~  137 (300)
T 2qc5_A           61 DAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIY  137 (300)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence            4679999999 6778888876 6889999986 77765543  235688 9999999999999874 5688888767 55


Q ss_pred             EecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEcCCC
Q 018705          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg  201 (351)
                      .+..  ....|++++++++|++|+++..                 .++|++||+ +++...+.  .....|.+|+++++|
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g  199 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG  199 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC
Confidence            4422  2368999999999999999864                 358999998 46665443  335679999999999


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEe-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      + +|+++... ++..-+. .++...+. ......|.++++|++|+||++...                            
T Consensus       200 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----------------------------  249 (300)
T 2qc5_A          200 A-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG----------------------------  249 (300)
T ss_dssp             S-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT----------------------------
T ss_pred             C-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC----------------------------
Confidence            7 99998654 4443333 33333332 111235788999999999999743                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~  342 (351)
                              .+.|.++++ +|+.. .+..+.+  ...+.++..+ +|+||+++. + +|.+++..
T Consensus       250 --------~~~i~~~~~-~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          250 --------ANQIGRITN-DNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             --------TTEEEEECT-TSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             --------CCeEEEECC-CCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                    136999999 88754 5544432  2345666665 689999998 6 99999854

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.79  E-value=3.3e-16  Score=148.84  Aligned_cols=233  Identities=15%  Similarity=0.141  Sum_probs=163.7

Q ss_pred             CcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC--CeEEEcC-CC-
Q 018705           50 CVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK--GLLKVTE-EG-  123 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~--gl~~~~~-~g-  123 (351)
                      ++..|.+|++| .++.||+... +++|.++|++++++..+......|.  ++++++|+ ||+++...  .++++++ .+ 
T Consensus       129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            47789999999 5677887654 6899999998888877765544454  89999985 78888754  6888886 33 


Q ss_pred             e-EEe----cCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe----ecCcc--c
Q 018705          124 V-EAI----VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGFY--F  191 (351)
Q Consensus       124 ~-~~l----~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----~~~~~--~  191 (351)
                      . ..+    ......|+++++++ +|.||+++.                  .++|++||++++....+    ..+..  .
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence            3 344    21337899999999 789999664                  35899999987776555    22222  2


Q ss_pred             cc-eEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccC--------------CCCCCceEECCCCCEEEEEe-cCCc
Q 018705          192 AN-GIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENL--------------PGGPDNINLAPDGSFWIGLI-KMNQ  254 (351)
Q Consensus       192 ~n-gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~--------------~g~pd~i~~d~~G~lwva~~-~~~~  254 (351)
                      |. +|+++|++..||+++..+ +++.-+.. +....+....              -..|.++++|++|+||++.. .   
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT---
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC---
Confidence            44 999999766799999876 55443321 2233333211              12488999999999999975 3   


Q ss_pred             hhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE-CCCCeEEEEEECC------CC----CcccceeEEEEE-
Q 018705          255 TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD-GNDGKIIRDFNDP------DA----TYISFVTSAAEF-  322 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~g~~~~~~~~~------~g----~~~~~~~~~~~~-  322 (351)
                                                       ...|.+++ + +|++......+      +|    ..+..+.+++.+ 
T Consensus       344 ---------------------------------~~~I~~~~~~-~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          344 ---------------------------------GYCLRKLDIL-DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             ---------------------------------TCEEEEEETT-TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             ---------------------------------CCEEEEEECC-CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence                                             24689999 6 88865443321      11    113457777765 


Q ss_pred             CCEEEEEecCCCeEEEEeC
Q 018705          323 DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       323 ~g~L~ig~~~~~~i~~~~~  341 (351)
                      +|.||++...+.+|.++.+
T Consensus       390 ~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEECCCCeEEEEEe
Confidence            4999999999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.79  E-value=3.5e-17  Score=151.69  Aligned_cols=235  Identities=17%  Similarity=0.206  Sum_probs=156.9

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEc---CC--EEEEEEcCCCeEEEEee-------cCCccccceEEcCCCCEEE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATR---DG--WVKYFILHNETLVNWKH-------IDSQSLLGLTTTKDGGVIL  109 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~---~g--~I~~~d~~~g~~~~~~~-------~~~~p~~gl~~d~~G~L~v  109 (351)
                      .++.+.... ..|++|+++ .+|++|++..   ++  +|+.++  ++++..+..       ....|+ ++++|++|+||+
T Consensus         8 ~~~~v~~~~-~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v   82 (343)
T 2qe8_A            8 RLEVVAELS-LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWM   82 (343)
T ss_dssp             CCEEEEEES-SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEE
T ss_pred             eeEEEEEcC-CCcceEEEC-CCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEee-EEEEcCCCcEEE
Confidence            445565543 589999999 5778888753   34  799998  677665421       124689 999999999999


Q ss_pred             EeCC------CCeEEEcC-CC--eEEecCC------CCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEE
Q 018705          110 CDNE------KGLLKVTE-EG--VEAIVPD------ASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus       110 ~d~~------~gl~~~~~-~g--~~~l~~~------~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                      +|.+      ..+++++. +|  .+.+...      ..+++++++|++ |.+|+++.+..              ..+.|+
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~  148 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALI  148 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEE
Confidence            9965      57888885 56  3444321      157899999975 78999997311              134677


Q ss_pred             EEeCCCCeEEEeecC------------------------------ccccceEEEcCCCCEEEEEecce-eEE-eec----
Q 018705          174 KYDPKLKETTVLHEG------------------------------FYFANGIALSKNEDFVVVCESWK-RYW-LKG----  217 (351)
Q Consensus       174 ~~d~~~~~~~~~~~~------------------------------~~~~ngi~~~~dg~~lyv~~~~~-~~~-i~~----  217 (351)
                      +||+++++...+..+                              ...+|||++++||+.||+++... +++ +..    
T Consensus       149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~  228 (343)
T 2qe8_A          149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS  228 (343)
T ss_dssp             EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred             EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence            777766655443211                              02479999999999999998766 433 321    


Q ss_pred             -CCCCceeEE----eccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEE
Q 018705          218 -DRAGILDAF----IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV  292 (351)
Q Consensus       218 -~~~~~~~~~----~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  292 (351)
                       ......+.+    .....+.|+|+++|++|++|++....                                    +.|.
T Consensus       229 ~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~------------------------------------~~V~  272 (343)
T 2qe8_A          229 NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH------------------------------------SAIG  272 (343)
T ss_dssp             CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG------------------------------------TEEE
T ss_pred             CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC------------------------------------CeEE
Confidence             111111110    00123479999999999999997541                                    3699


Q ss_pred             EEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCC
Q 018705          293 KVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSN  334 (351)
Q Consensus       293 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~  334 (351)
                      ++|+++|+.......+.   ...+++++.. +|+||+.+...+
T Consensus       273 ~~d~~~G~~~~~~~~~~---~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          273 VITSADRAYKLLVTDEK---LSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEETTTTEEEEEEECGG---GSCEEEEEECTTSCEEEEECCGG
T ss_pred             EEECCCCCEEEEEECCc---eecCCeeEECCCCcEEEEeCccc
Confidence            99985677554444432   3457777764 688999986443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=7.6e-17  Score=148.41  Aligned_cols=245  Identities=16%  Similarity=0.151  Sum_probs=161.0

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcCC-------------------------EEEEEEcCCCeEEEEee--cCCccccceEEc
Q 018705           50 CVNHPEDVSVVVSKGALYTATRDG-------------------------WVKYFILHNETLVNWKH--IDSQSLLGLTTT  102 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~g-------------------------~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d  102 (351)
                      ++..|.+|++| .+|.+|++...+                         .|+++|..+|++.....  ....|. ++++|
T Consensus        22 ~l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d   99 (329)
T 3fvz_A           22 LPGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSID   99 (329)
T ss_dssp             CCSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEEC
T ss_pred             ecCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEEC
Confidence            36678999999 567888876544                         69999997787754332  224799 99999


Q ss_pred             CCCCEEEEeCCC-CeEEEcCCC----eEEecC---------CCCCcccEEEcc-CCcEEEEeC-CCccCCcccccccccc
Q 018705          103 KDGGVILCDNEK-GLLKVTEEG----VEAIVP---------DASFTNDVIAAS-DGTLYFTVA-STKYTPTDFYKDMAEG  166 (351)
Q Consensus       103 ~~G~L~v~d~~~-gl~~~~~~g----~~~l~~---------~~~~~n~l~~d~-dG~ly~t~~-~~~~~~~~~~~~~~~~  166 (351)
                      ++|+||+++... .+++++++|    +..+..         ....|++|++++ +|++|++++ .               
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---------------  164 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---------------  164 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---------------
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---------------
Confidence            999999999865 466666655    233321         125799999999 899999996 3               


Q ss_pred             cCCceEEEEeCCCCeEEEee----------cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCce-eEEec-cCCCC
Q 018705          167 KPYGQLRKYDPKLKETTVLH----------EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGIL-DAFIE-NLPGG  233 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~----------~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~-~~~~~-~~~g~  233 (351)
                        .++|.+|++++.....+.          ..+..|+||++++++..|||++..+ ++.+-+...++. ..+.. .....
T Consensus       165 --~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~  242 (329)
T 3fvz_A          165 --NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN  242 (329)
T ss_dssp             --CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred             --CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence              468999997644343332          1245699999999955699999877 555443322332 22211 11122


Q ss_pred             CCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcc
Q 018705          234 PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYI  313 (351)
Q Consensus       234 pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~  313 (351)
                      +.++++.+ |.+++.....  ..                           .......+..++..+|+.+..+.... ...
T Consensus       243 ~~~~~~~p-g~~~~~~g~~--~v---------------------------~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~  291 (329)
T 3fvz_A          243 VFAISYIP-GFLFAVNGKP--YF---------------------------GDQEPVQGFVMNFSSGEIIDVFKPVR-KHF  291 (329)
T ss_dssp             EEEEEEET-TEEEEEECCC--CT---------------------------TCSCCCCEEEEETTTCCEEEEECCSS-SCC
T ss_pred             cceeeecC-CEEEEeCCCE--Ee---------------------------ccCCCcEEEEEEcCCCeEEEEEcCCC-Ccc
Confidence            34455555 4444433210  00                           01122358888965899888875322 224


Q ss_pred             cceeEEEEE-CCEEEEEecCCCeEEEEeCCCC
Q 018705          314 SFVTSAAEF-DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       314 ~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ..+.+++.+ +|+||++...+++|.++++.+.
T Consensus       292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             SSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            567777765 5799999999999999997654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.76  E-value=3.3e-16  Score=139.65  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=144.7

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeec-CCccccceEEcCC-CCEEEEeCCC-CeEEEcCCC--e
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKD-GGVILCDNEK-GLLKVTEEG--V  124 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~~-G~L~v~d~~~-gl~~~~~~g--~  124 (351)
                      ...|+++++|++++.+|++. .+++|++++.+++..+.+... ...|. ++++|++ ++||+++... .+.+++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            35689999997778888765 478999999865554444333 25799 9999985 6899999765 466666665  4


Q ss_pred             EEecC-CCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCC
Q 018705          125 EAIVP-DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (351)
Q Consensus       125 ~~l~~-~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg  201 (351)
                      +.+.. ....|+++++|+ +|++|+++...               ..++|+++++++...+.+. ..+..|+||++++++
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~  178 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS  178 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCC
Confidence            44433 337899999999 57899998641               1357999988754444443 456789999999998


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcc
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  280 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
                      +.||+++... ++..-+......+.+... ...|++++.| +|++|++....                            
T Consensus       179 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~----------------------------  228 (267)
T 1npe_A          179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKT----------------------------  228 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTT----------------------------
T ss_pred             CEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCC----------------------------
Confidence            8899999876 554443322233333332 3468999998 68899987531                            


Q ss_pred             cCCCCCCceEEEEEECCCCeEEEEEEC
Q 018705          281 LPMGSDAGARVVKVDGNDGKIIRDFND  307 (351)
Q Consensus       281 ~~~~~~~~~~v~~~~~~~g~~~~~~~~  307 (351)
                              +.|.++|+++|+.+..+..
T Consensus       229 --------~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          229 --------NSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             --------TEEEEEETTTTEEEEEECC
T ss_pred             --------CeEEEEeCCCCCceEEEcc
Confidence                    3689999956898888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=2.4e-16  Score=146.69  Aligned_cols=183  Identities=9%  Similarity=0.057  Sum_probs=132.2

Q ss_pred             cCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEee-cCCccccceEEcC-CCCEEEEeCCC-CeEEEcCCC--e
Q 018705           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--V  124 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~~g--~  124 (351)
                      +..|+++++|+.++.||.. ...++|++++++++..+.+.. ....|. ||++|+ .|+||+++... .+.+++.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            6789999999777877654 567899999996665554433 235788 999996 67999999875 456666666  4


Q ss_pred             EEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCC
Q 018705          125 EAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (351)
Q Consensus       125 ~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg  201 (351)
                      +.+. .....|++|++|| +|.||+++...                .++|+++++++...+.+. .++..||||++++++
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~  214 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  214 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence            4444 3347899999998 57899999751                268999998765555543 467889999999988


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +.||+++... +++..+......+.+.....+.|++++++ +|++|++...
T Consensus       215 ~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence            8899999877 55543322222333333223479999995 6789998653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.75  E-value=4.7e-16  Score=146.65  Aligned_cols=188  Identities=10%  Similarity=0.059  Sum_probs=133.9

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcC-CCCEEEEeCCCC-eEEE
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEKG-LLKV  119 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~  119 (351)
                      +.+..+ +..|+++++|+.++.||+ +...++|++++++++..+.+.. ....|. ||++|+ .|+||+++...+ +.++
T Consensus       109 ~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~  186 (386)
T 3v65_B          109 TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVA  186 (386)
T ss_dssp             EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEEC
T ss_pred             EEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEE
Confidence            344443 678999999977787765 4567899999996665555433 335789 999996 678999998765 5555


Q ss_pred             cCCC--eEEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccce
Q 018705          120 TEEG--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANG  194 (351)
Q Consensus       120 ~~~g--~~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ng  194 (351)
                      +.+|  .+.+. .....|++|++|| +|.||+++...                .++|+++++++...+.+ ..++..|||
T Consensus       187 ~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          187 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNG  250 (386)
T ss_dssp             BTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             eCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCeee
Confidence            5566  44443 3447899999997 56899999751                26899999875544444 356788999


Q ss_pred             EEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          195 IALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      |+++++++.||++++.. +++..+......+.+.....+.|++++++ ++++|++..
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~  306 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW  306 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeC
Confidence            99998888899999877 66654432223333433223479999995 568888864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=8.4e-16  Score=141.52  Aligned_cols=211  Identities=11%  Similarity=0.117  Sum_probs=146.1

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCC------ccccceEEcCCCCEEEEeC--CCCeEEEcC
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDS------QSLLGLTTTKDGGVILCDN--EKGLLKVTE  121 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~------~p~~gl~~d~~G~L~v~d~--~~gl~~~~~  121 (351)
                      ...|+++++++ ++.+|++. .++.|.++|+.++++......+.      .|. +|++ .+++||+++.  .+.+..++.
T Consensus        83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred             CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence            46799999984 56999988 78999999998888764434444      799 9999 5789999986  456777885


Q ss_pred             -CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--CccccceEE
Q 018705          122 -EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GFYFANGIA  196 (351)
Q Consensus       122 -~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~ngi~  196 (351)
                       ++  ...+... ..|++++++++|++|+++... +...     .+ ....+.|+++|++++++.....  ....|++++
T Consensus       160 ~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~-~~~~-----~~-~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          160 ETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGG-YEGS-----PY-GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             TTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCB-CTTC-----SS-CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             CCCeEEEEEEcC-CCccceEEcCCCCEEEEECCC-ccCC-----cc-ccCCceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence             55  3444333 579999999999999998641 1000     00 0113689999999888754332  134799999


Q ss_pred             EcCCCCEEEEEecceeEEeecCCCCce--eEEeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhc
Q 018705          197 LSKNEDFVVVCESWKRYWLKGDRAGIL--DAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  273 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      +++|+++||+++. ..+.++ ...++.  ..+.......|+++++|+ +|+|||+....                     
T Consensus       232 ~~~d~~~lyv~~~-~v~~~d-~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~---------------------  288 (328)
T 3dsm_A          232 LNGTRDTLYWINN-DIWRMP-VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID---------------------  288 (328)
T ss_dssp             ECTTSCEEEEESS-SEEEEE-TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT---------------------
T ss_pred             EecCCCEEEEEcc-EEEEEE-CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc---------------------
Confidence            9999999999886 322222 222221  111111124689999997 78999997320                     


Q ss_pred             cchhhcccCCCCCCceEEEEEECCCCeEEEEEEC
Q 018705          274 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  307 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  307 (351)
                                 -...+.|.+||+ +|+.+..+..
T Consensus       289 -----------y~~~~~V~v~d~-~g~~~~~i~~  310 (328)
T 3dsm_A          289 -----------YQQQGIVYRYSP-QGKLIDEFYV  310 (328)
T ss_dssp             -----------SSSEEEEEEECT-TCCEEEEEEE
T ss_pred             -----------cccCCEEEEECC-CCCEEEEEEe
Confidence                       012367999999 8999988863

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.73  E-value=5.5e-15  Score=137.42  Aligned_cols=227  Identities=13%  Similarity=0.084  Sum_probs=159.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCC-CeEEEcCCC--eEEe-cC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK-GLLKVTEEG--VEAI-VP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~-gl~~~~~~g--~~~l-~~  129 (351)
                      .+.+.+ .+..|+++... .|.+++..+...+.......+|. ++++| .+++||++|... .|++++.+|  .+.+ ..
T Consensus        37 ~C~~~~-~~~~ll~~~~~-~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           37 SCKALG-PEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             CEEESS-SCCEEEEECBS-CEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             cccccc-cCceeEeeccc-ceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            455555 35667776655 49999986666666555567799 99999 567999999765 467777655  4444 34


Q ss_pred             CCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEE
Q 018705          130 DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       130 ~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      ....|+++++|+ +|+||+++..                 .++|.++++++...+.+. ..+..|+||+++|++..||++
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe
Confidence            447899999997 5789999976                 458999998755444443 567899999999977789999


Q ss_pred             ecce--eEEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCC
Q 018705          208 ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  284 (351)
Q Consensus       208 ~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
                      +...  +++..+......+.+....-..|+|+++|+ +|+||++....                                
T Consensus       177 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--------------------------------  224 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--------------------------------  224 (349)
T ss_dssp             ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--------------------------------
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--------------------------------
Confidence            9764  444432221222333322223689999995 67899997531                                


Q ss_pred             CCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          285 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       285 ~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                          ..|.+++. +|+....+-.. +  ...+.++...++.||++...++.|.+++.
T Consensus       225 ----~~I~~~~~-dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          225 ----HVIERANL-DGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             ----TEEEEEET-TSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----CEEEEEeC-CCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCCeEEEEEc
Confidence                36889998 88644444321 1  23466666688999999999999999983

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=2.1e-15  Score=145.05  Aligned_cols=241  Identities=13%  Similarity=0.134  Sum_probs=167.9

Q ss_pred             CCCcCCCceEEEee-CCCeEEEEEc-CCEEEEEEcCCCeEEEEeecC----CccccceEE-------cCCCC-EEEEeCC
Q 018705           48 EGCVNHPEDVSVVV-SKGALYTATR-DGWVKYFILHNETLVNWKHID----SQSLLGLTT-------TKDGG-VILCDNE  113 (351)
Q Consensus        48 ~~~~~~pe~i~~d~-~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~----~~p~~gl~~-------d~~G~-L~v~d~~  113 (351)
                      ...+..|.++++|| ++++||+... .++|.++|.+++.+..+....    .+|. +|++       |++|+ ||+++..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            44567899999997 4788998765 467999999888887765432    3689 9999       99997 9999977


Q ss_pred             C-------CeEEEcC--CC-e------EEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705          114 K-------GLLKVTE--EG-V------EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (351)
Q Consensus       114 ~-------gl~~~~~--~g-~------~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (351)
                      .       .++.+++  +| .      ..+. ....|+++++++ +|.||+++..                 .+.|++||
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d  275 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYE-----------------KGQVFRLD  275 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETT-----------------TTEEEEEC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEEEe
Confidence            5       2566653  34 3      2343 236899999999 6799999975                 56899999


Q ss_pred             CC-------CCeE-------------EEee-cCccccceEEEcCCCCEEEEEecce-eEEee--cCCCCc---eeEEec-
Q 018705          177 PK-------LKET-------------TVLH-EGFYFANGIALSKNEDFVVVCESWK-RYWLK--GDRAGI---LDAFIE-  228 (351)
Q Consensus       177 ~~-------~~~~-------------~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~--~~~~~~---~~~~~~-  228 (351)
                      ++       +++.             +.+. .....|.+|+++|+|+.|||+++.+ +++..  +...+.   ...++. 
T Consensus       276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            87       5543             1111 2235688999999999999999877 55442  122222   123332 


Q ss_pred             -cCCC------------CCC-ceEEC-------CCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          229 -NLPG------------GPD-NINLA-------PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       229 -~~~g------------~pd-~i~~d-------~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                       ...|            .|. +++.|       ++|+|||+...                                    
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~------------------------------------  399 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL------------------------------------  399 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG------------------------------------
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC------------------------------------
Confidence             1112            366 67777       68999999754                                    


Q ss_pred             ceEEEEEECCCCeEEEEEECC--------------CC-----CcccceeEEEEEC--CEEEEEecCCCeEEEEeCCCC
Q 018705          288 GARVVKVDGNDGKIIRDFNDP--------------DA-----TYISFVTSAAEFD--GNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~--------------~g-----~~~~~~~~~~~~~--g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ...|.+|++ +|++....-..              +|     ..+..+++++.+.  |.|||+...+.+|.++.+.+.
T Consensus       400 N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          400 NFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             GTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             CCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            236889999 99755433211              12     1245577888663  899999999999999997664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.71  E-value=6.6e-15  Score=138.76  Aligned_cols=228  Identities=13%  Similarity=0.089  Sum_probs=160.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCC-CeEEEcCCC--eEEe-c
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK-GLLKVTEEG--VEAI-V  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~-gl~~~~~~g--~~~l-~  128 (351)
                      -.+.+.+ ....|+++... .|.+++..++..+.+......|. ++++| .+++||++|... .|++++.+|  .+.+ .
T Consensus        79 ~~C~~~~-~~~~l~~~~~~-~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALG-PEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECS-SCCEEEEECBS-CEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcc-ccceeEeecCc-cceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            3455555 35667776654 59999997666666666667899 99999 467899999765 466777655  4443 3


Q ss_pred             CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCCEEEE
Q 018705          129 PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       129 ~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      .....|+++++|+ +|+||+++..                 .++|.++++++...+.+ ...+..|+||+++|++..||+
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence            4447899999997 5789999976                 35899998875544443 356789999999998888999


Q ss_pred             Eecce--eEEeecCCCCceeEEeccCCCCCCceEEC-CCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCC
Q 018705          207 CESWK--RYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPM  283 (351)
Q Consensus       207 ~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (351)
                      ++...  +++..+......+.+....-..|+|+++| .+++||++....                               
T Consensus       219 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~-------------------------------  267 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH-------------------------------  267 (386)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT-------------------------------
T ss_pred             eccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC-------------------------------
Confidence            99765  44443322222333332222369999999 467899997531                               


Q ss_pred             CCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          284 GSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       284 ~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                           ..|.+++. +|.....+... +  ...+.++...++.||++...+.+|.+++.
T Consensus       268 -----~~I~~~d~-dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          268 -----HVIERANL-DGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             -----TEEEEECT-TSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -----CEEEEEeC-CCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence                 36889998 87544444321 2  23456676788999999999999999983

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.71  E-value=3.7e-15  Score=136.63  Aligned_cols=183  Identities=13%  Similarity=0.100  Sum_probs=127.9

Q ss_pred             cCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCC----CeEEEEee-cCCccccceEEcC-CCCEEEEeCCC-CeEEEcCC
Q 018705           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHN----ETLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~----g~~~~~~~-~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~~  122 (351)
                      +..|+++++|+.++.+|+. ..+++|++++..+    ...+.+.. ....|. ||++|+ .++||+++... .+.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            6789999999777777665 4578999999854    22233322 235788 999995 67899999765 46666666


Q ss_pred             C--eEEecC-CCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEE
Q 018705          123 G--VEAIVP-DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (351)
Q Consensus       123 g--~~~l~~-~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~  197 (351)
                      |  .+.+.. ....|+++++|| +|.+|+++...                .++|+++++++...+.+. ..+..|+||++
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~----------------~~~I~~~~~dG~~~~~~~~~~~~~P~gla~  171 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCC----------------CCeEEEEcCCCCCeEEEEECCCCCceEEEE
Confidence            6  444443 347899999998 67899998641                268999998755554443 46789999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEecc--CCCCCCceEECCCCCEEEEEec
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++++.||+++... ++...+......+.+...  ....|+++++| +|++|++...
T Consensus       172 d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~  227 (316)
T 1ijq_A          172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             eccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECC
Confidence            99888899999876 554433222233444432  23468999997 4789998743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.70  E-value=2.1e-14  Score=127.91  Aligned_cols=219  Identities=13%  Similarity=0.107  Sum_probs=148.6

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEE------EEeecCCccccceEEcC-CCCEEEEeCCC-CeEEEcCCC--eEEec-CCCCC
Q 018705           65 ALYTATRDGWVKYFILHNETLV------NWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--VEAIV-PDASF  133 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~------~~~~~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~~g--~~~l~-~~~~~  133 (351)
                      .||++.. ++|++++.+++..+      .+.....+|. ++++|+ +++||+++... .+++++.+|  .+.+. .....
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            4566554 47999998554321      2222345788 999997 56899999765 467777655  44443 33468


Q ss_pred             cccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecc-
Q 018705          134 TNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW-  210 (351)
Q Consensus       134 ~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~-  210 (351)
                      |+++++|++ |++|+++..                 .++|.+++.++...+.+. .++..|++|++++++..||+++.. 
T Consensus        81 p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~  143 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (267)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence            999999985 689999975                 468999998754444333 456789999999977789999875 


Q ss_pred             -e-eEEeecCCCCceeEEeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          211 -K-RYWLKGDRAGILDAFIENLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       211 -~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                       . ++..........+.+.......|.++++|++ ++||++....                                   
T Consensus       144 ~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~-----------------------------------  188 (267)
T 1npe_A          144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT-----------------------------------  188 (267)
T ss_dssp             SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT-----------------------------------
T ss_pred             CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC-----------------------------------
Confidence             2 4433221111223333222246899999986 5799987531                                   


Q ss_pred             ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                       ..|.++++ +|.....+..  +  ...+.++..+++.||++...++.|.+++..+
T Consensus       189 -~~I~~~~~-~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          189 -HRAECLNP-AQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             -TEEEEEET-TEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             -CEEEEEec-CCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence             36899999 8765544432  1  1234566677899999999999999999763

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.70  E-value=3.3e-15  Score=153.47  Aligned_cols=222  Identities=14%  Similarity=0.198  Sum_probs=162.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec---------CCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---------DSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG  123 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~---------~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g  123 (351)
                      .+++.| ++|.+|+|+.+++|.++++.+++++.+...         ..... +++.|++|+ ||++...+|++++++ ++
T Consensus       360 ~~i~~d-~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          360 SCIVED-KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEC-TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             EEEEEC-CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            478888 689999999987899999988888776421         23456 888999999 999998889999996 56


Q ss_pred             -eEEecCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-----c--c
Q 018705          124 -VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-----F--Y  190 (351)
Q Consensus       124 -~~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-----~--~  190 (351)
                       .+.+...     ...+.+++.|++|+||++...                   +|++||+++++.+.+...     +  .
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-------------------Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-------------------ALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-------------------CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-------------------ceeEEeCCCCeEEEccccccccccCCc
Confidence             6665431     156788999999999998743                   699999998887665421     1  2


Q ss_pred             ccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEec--cCCCC----CCceEECCCCCEEEEEecCCchhhhhhhc
Q 018705          191 FANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIE--NLPGG----PDNINLAPDGSFWIGLIKMNQTGVRAIQK  262 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~--~~~g~----pd~i~~d~~G~lwva~~~~~~~~~~~~~~  262 (351)
                      ....|..+++|+ +|++...+  ++....   ++. .+..  ...+.    ...+..|++|+||+++..           
T Consensus       499 ~i~~i~~d~~g~-lWigt~~Gl~~~~~~~---~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-----------  562 (795)
T 4a2l_A          499 QITTLFRDSHKR-LWIGGEEGLSVFKQEG---LDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-----------  562 (795)
T ss_dssp             CEEEEEECTTCC-EEEEESSCEEEEEEET---TEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-----------
T ss_pred             eEEEEEECCCCC-EEEEeCCceEEEeCCC---CeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-----------
Confidence            346788899997 99988755  444332   222 2211  11122    234678999999999743           


Q ss_pred             ChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeC
Q 018705          263 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~  341 (351)
                                                 ++.++|+ +.+.+..|...+|.+...+.+++++ +|+||+++  ..+|.+++.
T Consensus       563 ---------------------------Gl~~~d~-~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~  612 (795)
T 4a2l_A          563 ---------------------------GFYCFNE-KDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNP  612 (795)
T ss_dssp             ---------------------------CEEEEET-TTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEET
T ss_pred             ---------------------------CceeECC-CCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcC
Confidence                                       5899999 7666778876667666678888776 68999999  588999986


Q ss_pred             CC
Q 018705          342 DG  343 (351)
Q Consensus       342 ~~  343 (351)
                      .+
T Consensus       613 ~~  614 (795)
T 4a2l_A          613 ET  614 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=2e-15  Score=133.92  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=127.8

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-CccccceEEcCCCCEEEEeCCC-CeEEEcCCC--eE
Q 018705           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG--VE  125 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~d~~~-gl~~~~~~g--~~  125 (351)
                      ....|.+++++ .+|.+|++..+++|+++++.++....+.... ..|. ++++|++|+||+++... .+++++...  ..
T Consensus        65 ~~~~p~~i~~~-~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           65 GLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             SCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             CcCCcceeEEC-CCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence            35689999999 4677999887889999998665554443222 5688 99999999999998654 577776433  32


Q ss_pred             Eec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCE
Q 018705          126 AIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDF  203 (351)
Q Consensus       126 ~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~  203 (351)
                      ... .....|++++++++|++|+++..                 .++|++||++++...... ..+..|++|+++++|. 
T Consensus       143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-  204 (270)
T 1rwi_B          143 VLPFTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-  204 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-
T ss_pred             eeccccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCCC-
Confidence            222 22368999999999999999864                 358999998876554432 3457899999999995 


Q ss_pred             EEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          204 VVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +|+++... ++..-+................|.++++|++|++|++...
T Consensus       205 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          205 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            99998755 4333322212222211111135789999999999999754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=4.1e-14  Score=129.85  Aligned_cols=234  Identities=14%  Similarity=0.107  Sum_probs=162.6

Q ss_pred             CCCceEEEeeCCCeEEEEEc-------CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC-CeEEEcC-
Q 018705           52 NHPEDVSVVVSKGALYTATR-------DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKVTE-  121 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-------~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~-gl~~~~~-  121 (351)
                      .+|.+++++++++.+|++..       ++.|+.+|..+++..........|. +++++++|+ +|+++... .+..++. 
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            46889999988889999874       4689999998887655445566788 999999997 89988764 4556664 


Q ss_pred             CC--eEEecCCC---------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-C
Q 018705          122 EG--VEAIVPDA---------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-G  188 (351)
Q Consensus       122 ~g--~~~l~~~~---------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~  188 (351)
                      ++  ...+....         ..|.+++++++|+ +|+++..                ..+.|++||+++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            55  34443321         1378899999985 8887742                13579999999887765554 4


Q ss_pred             ccccceEEEcCCCCEEEEEecceeEEeecCCCCcee-EEec---cCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcC
Q 018705          189 FYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILD-AFIE---NLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKC  263 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~-~~~~---~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~  263 (351)
                      ...|+++++++||+.+|+++..+.+.+-+...++.. .+..   .....+.+++++++|+ +|++...            
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------  251 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------------  251 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------------
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------------
Confidence            456899999999999999887663333333233322 2211   1122455689999997 7777532            


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEecCCCeEEEEeC
Q 018705          264 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~~  341 (351)
                                              .+.|..+|.++++.+..+..+..      ..+..  ++..||+++...+.|.++++
T Consensus       252 ------------------------~~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          252 ------------------------AAEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             ------------------------SSEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------------------------CCEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence                                    13688899877888877764332      12333  34579999988899999997


Q ss_pred             CCC
Q 018705          342 DGP  344 (351)
Q Consensus       342 ~~~  344 (351)
                      .+.
T Consensus       302 ~~~  304 (353)
T 3vgz_A          302 KSY  304 (353)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.69  E-value=4.9e-15  Score=135.95  Aligned_cols=182  Identities=12%  Similarity=0.104  Sum_probs=128.9

Q ss_pred             cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeE--EEEeecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCCC--
Q 018705           51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG--  123 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~g--  123 (351)
                      +..|.++++|+.++.||. +...++|++++++++..  .........|. |+++|+ .|+||++|...+ +.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            556889999976777654 55688999999865532  22333346789 999995 779999997654 55666666  


Q ss_pred             eEEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCC
Q 018705          124 VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKN  200 (351)
Q Consensus       124 ~~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~d  200 (351)
                      .+.+. .....|++|++|+ +|.||+++...                .++|+++++++...+.+ ..++..||||+++++
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCC----------------CCEEEEEEcCCCCeEEEEECCCCCccEEEEecc
Confidence            45554 4447899999998 47899999641                35899999875444444 356889999999998


Q ss_pred             CCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          201 EDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       201 g~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ++.||++++.. +++..+......+.+....-+.|+++++|. +++|++..
T Consensus       177 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~  226 (318)
T 3sov_A          177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW  226 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET
T ss_pred             CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec
Confidence            88899999877 555443322333445443335799999985 46777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.69  E-value=4.7e-15  Score=148.02  Aligned_cols=187  Identities=11%  Similarity=0.075  Sum_probs=139.1

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEeecC-CccccceEEcC-CCCEEEEeCCCC-eEEEcC
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTK-DGGVILCDNEKG-LLKVTE  121 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~  121 (351)
                      ++...+..|.+|++|+.++.+|++ ..+++|++++.+++..+.+...+ ..|. ||++|. .++||++|...+ +.+++.
T Consensus        31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~  109 (628)
T 4a0p_A           31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKL  109 (628)
T ss_dssp             CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEec
Confidence            444457789999999878887764 56889999998655555554433 5799 999996 568999998765 455556


Q ss_pred             CC--eEEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705          122 EG--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (351)
Q Consensus       122 ~g--~~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~  197 (351)
                      +|  .+.+. .....|++|++|| +|.||+||...                .++|+++++++...+.+...+..|+||++
T Consensus       110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~~~P~Glal  173 (628)
T 4a0p_A          110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG----------------KPKIDRAAMDGSERTTLVPNVGRANGLTI  173 (628)
T ss_dssp             TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred             CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC----------------CCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence            66  55554 4457899999998 68999999641                35899999987777777788899999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++++.||+++... +++..+......+++...++ .|.+++++. +++|++...
T Consensus       174 D~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~-~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          174 DYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCS-CEEEEEEET-TEEEEEETT
T ss_pred             ccccCEEEEEECCCCEEEEEcCCCCceEEeeccCC-CceEEEEEC-CEEEEecCC
Confidence            99988999999877 55544322223345554443 689999986 789998753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=3.6e-15  Score=152.88  Aligned_cols=225  Identities=11%  Similarity=0.075  Sum_probs=162.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee----cCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~----~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l  127 (351)
                      ..+++.| .+|.+|+++.+++|+++++.+++++.+..    ...... .++.|++|+||++....|++++++ ++ .+.+
T Consensus       365 v~~i~~d-~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          365 VSSVCDD-GQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-CSLKDSEGNLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             EEEEEEC-TTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-EEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred             eEEEEEc-CCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-EEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence            3477888 67999999987779999987666655421    123456 889999999999998789999996 56 6655


Q ss_pred             cCC---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------ccccceEEEc
Q 018705          128 VPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------FYFANGIALS  198 (351)
Q Consensus       128 ~~~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------~~~~ngi~~~  198 (351)
                      ...   ...+.+++.|++|+||++..                   ++|++||+++++.+.+...      ......|+.+
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKKIWIGTH-------------------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD  503 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSEEEEEET-------------------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred             ccCCCCCCeEEEEEECCCCCEEEEEC-------------------CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence            431   25688899999999999874                   3799999988776554321      1346678899


Q ss_pred             CCCCEEEEEecc-eeEEeecCCCCceeEEeccCCCCCC----ceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhc
Q 018705          199 KNEDFVVVCESW-KRYWLKGDRAGILDAFIENLPGGPD----NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  273 (351)
Q Consensus       199 ~dg~~lyv~~~~-~~~~i~~~~~~~~~~~~~~~~g~pd----~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      ++|+ ||++... +.+.+. ...++.+.+.. ..+.+.    .+..|++|+||+++..                      
T Consensus       504 ~~g~-lWigt~~~Gl~~~~-~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~----------------------  558 (781)
T 3v9f_A          504 SEGR-FWIGTFGGGVGIYT-PDMQLVRKFNQ-YEGFCSNTINQIYRSSKGQMWLATGE----------------------  558 (781)
T ss_dssp             TTCC-EEEEESSSCEEEEC-TTCCEEEEECT-TTTCSCSCEEEEEECTTSCEEEEETT----------------------
T ss_pred             CCCC-EEEEEcCCCEEEEe-CCCCeEEEccC-CCCCCCCeeEEEEECCCCCEEEEECC----------------------
Confidence            9997 9998874 444443 22344444432 223343    4678999999999752                      


Q ss_pred             cchhhcccCCCCCCceEE-EEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          274 PGLISLLLPMGSDAGARV-VKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                      ++ .++|+ +.+.+..|...+|.+...+.+++++ +|+||+++  .++|.+++..+
T Consensus       559 ----------------Glv~~~d~-~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~  611 (781)
T 3v9f_A          559 ----------------GLVCFPSA-RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSK  611 (781)
T ss_dssp             ----------------EEEEESCT-TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTT
T ss_pred             ----------------CceEEECC-CCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCC
Confidence                            45 99999 6655777866667666677788765 68999998  57799998653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=3.9e-15  Score=133.51  Aligned_cols=181  Identities=12%  Similarity=0.230  Sum_probs=128.7

Q ss_pred             CcCCCceEEEeeCCCeEEEEEc--CCEEEEEEcCCCeE-EEEee-cCCccccceEEcCCCCEEEEeCCC-CeEEEcCCC-
Q 018705           50 CVNHPEDVSVVVSKGALYTATR--DGWVKYFILHNETL-VNWKH-IDSQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG-  123 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~--~g~I~~~d~~~g~~-~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~~~g-  123 (351)
                      .+..|.+++++..++.+|++..  +++|.+++. +++. ..+.. ....|. ++++|++|++|+++... .+++++++| 
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence            3467899999546889999874  789999996 5554 33422 224688 99999999999998754 577777766 


Q ss_pred             -eEEecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEc
Q 018705          124 -VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALS  198 (351)
Q Consensus       124 -~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~  198 (351)
                       ...+..  ....|++|+++++|++|+++..                 .++|++||+++..+..+...  +..|.+|+++
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d  215 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGIN  215 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEEC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEEccCCccCCCcEEEEC
Confidence             444432  2367999999999999999864                 46899999875545444322  4689999999


Q ss_pred             CCCCEEEEEecce--eEEeecCCCCceeEEeccCC-CCCCceEECCCCCEEEEEe
Q 018705          199 KNEDFVVVCESWK--RYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d~~G~lwva~~  250 (351)
                      ++|+ +|+++...  ++.+-+........+..... ..|.+++++++|++|++..
T Consensus       216 ~~G~-l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          216 SNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             TTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             CCCC-EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence            9997 99988643  45444432222333332221 2467899999999999953

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=6.7e-15  Score=150.86  Aligned_cols=225  Identities=15%  Similarity=0.171  Sum_probs=162.9

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec---CCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~~  129 (351)
                      .+++.| .+|.||+++..++|+++++++++++.+...   ..... .++.|++|+||++.. .|++++++ ++ .+.+..
T Consensus       410 ~~i~~d-~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          410 LCSLKD-SEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR-VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             EEEEEC-TTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE-EEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC
T ss_pred             EEEEEC-CCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE-EEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc
Confidence            467777 689999999878899999988888776432   23456 889999999999997 79999996 55 444322


Q ss_pred             -C-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--Cc--cccceEEEcC
Q 018705          130 -D-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GF--YFANGIALSK  199 (351)
Q Consensus       130 -~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~--~~~ngi~~~~  199 (351)
                       .     ...+++++.|++|+||++...                  ++|++||+++++.+.+..  ++  ...++|..++
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIGTFG------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS  548 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEEESS------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT
T ss_pred             CcccccccceeEEEEEcCCCCEEEEEcC------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC
Confidence             1     156888999999999998753                  369999998887776543  22  2345788889


Q ss_pred             CCCEEEEEeccee-EEeecCCCCceeEEeccCCCCC----CceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhcc
Q 018705          200 NEDFVVVCESWKR-YWLKGDRAGILDAFIENLPGGP----DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYP  274 (351)
Q Consensus       200 dg~~lyv~~~~~~-~~i~~~~~~~~~~~~~~~~g~p----d~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                      +|+ ||++...+. +..+ +..++.+.+.. ..|+|    .++..|++|+||+++..                       
T Consensus       549 ~g~-lWi~T~~Glv~~~d-~~~~~~~~~~~-~~gl~~~~i~~i~~d~~g~lW~~t~~-----------------------  602 (781)
T 3v9f_A          549 KGQ-MWLATGEGLVCFPS-ARNFDYQVFQR-KEGLPNTHIRAISEDKNGNIWASTNT-----------------------  602 (781)
T ss_dssp             TSC-EEEEETTEEEEESC-TTTCCCEEECG-GGTCSCCCCCEEEECSSSCEEEECSS-----------------------
T ss_pred             CCC-EEEEECCCceEEEC-CCCCcEEEccc-cCCCCCceEEEEEECCCCCEEEEcCC-----------------------
Confidence            997 999887554 5444 33344454432 22333    45788999999999643                       


Q ss_pred             chhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccce--eEEEE-ECCEEEEEecCCCeEEEEeCCCC
Q 018705          275 GLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV--TSAAE-FDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       275 ~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~-~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                     ++.+|+| +.+.+..|...+|.....+  .+++. .+|+||+|+.  +++.+++....
T Consensus       603 ---------------Gl~~~~~-~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~f~p~~~  657 (781)
T 3v9f_A          603 ---------------GISCYIT-SKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI--NGLCFFNPDIA  657 (781)
T ss_dssp             ---------------CEEEEET-TTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET--TEEEEECSCCG
T ss_pred             ---------------ceEEEEC-CCCceEEecccCCccccccccCceEECCCCEEEEECC--CceEEEChhhc
Confidence                           5999999 7777888876677654433  24444 3799999995  78999986543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.68  E-value=1.1e-14  Score=149.61  Aligned_cols=223  Identities=15%  Similarity=0.223  Sum_probs=160.0

Q ss_pred             ceEEEeeCCCe-EEEEEcCCEEEEEEcCCCeEEEEee-----cCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEE
Q 018705           55 EDVSVVVSKGA-LYTATRDGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEA  126 (351)
Q Consensus        55 e~i~~d~~~g~-lyv~~~~g~I~~~d~~~g~~~~~~~-----~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~  126 (351)
                      .+++.| .++. ||+++.+++|+++++++++++.+..     ....+. .+..|++|+||++.. .|++++++ ++ .+.
T Consensus       409 ~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          409 KAVYVD-EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEE-TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             EEEEEc-CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence            477888 6777 9999998889999998888877753     123456 889999999999997 79999996 55 555


Q ss_pred             ecCC-----C--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-----Cc--ccc
Q 018705          127 IVPD-----A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----GF--YFA  192 (351)
Q Consensus       127 l~~~-----~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~--~~~  192 (351)
                      +...     .  ..+++++.|++|++|++...                   +|++||+++++. .+..     .+  ...
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-------------------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i  545 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGEE-------------------GLSVFKQEGLDI-QKASILPVSNVTKLFT  545 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEESS-------------------CEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeCC-------------------ceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence            4321     1  56788999999999998742                   699999887766 3221     12  234


Q ss_pred             ceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCc----eEECCCCCEEEEEecCCchhhhhhhcChhHHH
Q 018705          193 NGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDN----INLAPDGSFWIGLIKMNQTGVRAIQKCREKWE  268 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~----i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~  268 (351)
                      ++|+.+++|+ +|++...+.+.++ ...++.+.+. ...|+|++    +..|++|+||+++..                 
T Consensus       546 ~~i~~d~~g~-lWigT~~Gl~~~d-~~~~~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~-----------------  605 (795)
T 4a2l_A          546 NCIYEASNGI-IWVGTREGFYCFN-EKDKQIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR-----------------  605 (795)
T ss_dssp             EEEEECTTSC-EEEEESSCEEEEE-TTTTEEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT-----------------
T ss_pred             EEEEECCCCC-EEEEeCCCceeEC-CCCCcEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC-----------------
Confidence            5788899997 9998766633333 2234444443 22345544    678999999999743                 


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccce--eEEEE-ECCEEEEEecCCCeEEEEeCCCC
Q 018705          269 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV--TSAAE-FDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~-~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                           ++.+|+| +.+.+..|...+|.....+  .+++. .+|+||+|+.  +++.+++....
T Consensus       606 ---------------------Gl~~~~~-~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~~~p~~~  660 (795)
T 4a2l_A          606 ---------------------GISCFNP-ETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI--NGITTFRPELL  660 (795)
T ss_dssp             ---------------------EEEEEET-TTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET--TEEEEECGGGC
T ss_pred             ---------------------ceEEEcC-CCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC--CceEEEcHHHc
Confidence                                 6999999 7666778876677655544  34444 4689999995  78999986543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.68  E-value=1.3e-14  Score=135.08  Aligned_cols=253  Identities=13%  Similarity=0.153  Sum_probs=162.1

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee------cCCccccceEEcCC----CCEEEEe
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKD----GGVILCD  111 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~------~~~~p~~gl~~d~~----G~L~v~d  111 (351)
                      .+|+++.+ +..|+++++++ +|.+|++...|+|++++. +|+ +.+..      ....|. ||+++++    |.|||+.
T Consensus        20 ~~~~va~~-l~~P~~ia~~p-dG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLG-GGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEE-TTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcC-CCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEE
Confidence            45777776 88999999995 678999999999999985 666 44431      234688 9999986    8999998


Q ss_pred             CC--------CCeEEEcC--C-C----eEEecC----C-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCce
Q 018705          112 NE--------KGLLKVTE--E-G----VEAIVP----D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (351)
Q Consensus       112 ~~--------~gl~~~~~--~-g----~~~l~~----~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~  171 (351)
                      ..        ..+++++.  . +    .+++..    . ...+++|++++||.||++..... . .....+  .....|+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~-~-~~~~~d--~~~~~G~  170 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAA-D-PRLAQD--LSSLAGK  170 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTT-C-GGGGTC--TTCCSSE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCC-C-CccccC--CCCCCeE
Confidence            63        56788773  2 1    122211    1 25789999999999999975311 0 000000  1123578


Q ss_pred             EEEEeCCCC--------eEEEeecCccccceEEEcC-CCCEEEEEecce----eEEeec--CCCC------------cee
Q 018705          172 LRKYDPKLK--------ETTVLHEGFYFANGIALSK-NEDFVVVCESWK----RYWLKG--DRAG------------ILD  224 (351)
Q Consensus       172 l~~~d~~~~--------~~~~~~~~~~~~ngi~~~~-dg~~lyv~~~~~----~~~i~~--~~~~------------~~~  224 (351)
                      |+|+++++.        ..+.+..++.+|+||++++ +|+ ||+++...    .+.+..  ...|            -..
T Consensus       171 I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          171 ILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             EEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence            999999743        3466778899999999999 565 99999875    343321  1111            000


Q ss_pred             E-Eec-cCCCCCCceEE-------CCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE
Q 018705          225 A-FIE-NLPGGPDNINL-------APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD  295 (351)
Q Consensus       225 ~-~~~-~~~g~pd~i~~-------d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  295 (351)
                      . +.- .....|.|+++       +.+|++|++....                                    +.|.+++
T Consensus       250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------------------------------------~~v~~~~  293 (354)
T 3a9g_A          250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------------------------------------SMLAAVN  293 (354)
T ss_dssp             CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------------------------------------TEEEEEE
T ss_pred             CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------------------------------------CEEEEEE
Confidence            0 100 11224788887       4678999986532                                    2466666


Q ss_pred             CC-CCeEE--EEEECCCCCcccceeEEEEE-CCEEEEEecC-CC---------eEEEEeCCC
Q 018705          296 GN-DGKII--RDFNDPDATYISFVTSAAEF-DGNLYLASLQ-SN---------FIGILPLDG  343 (351)
Q Consensus       296 ~~-~g~~~--~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~-~~---------~i~~~~~~~  343 (351)
                      .+ +|+..  +.+-.  +. ...+..+... +|.||+.+.. .+         +|+|+...+
T Consensus       294 ~~~~g~~~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          294 FGDNMEVRKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             ECGGGCEEEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred             ECCCCcccceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence            51 34443  22321  11 2346677765 5799999973 33         899987544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.68  E-value=5.8e-14  Score=128.64  Aligned_cols=221  Identities=13%  Similarity=0.106  Sum_probs=153.0

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCC-CeEEEcC-C----C-eEEe-cCCCCCcc
Q 018705           65 ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTE-E----G-VEAI-VPDASFTN  135 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~-~----g-~~~l-~~~~~~~n  135 (351)
                      .|+++..+ .|.+++..+++.........+|. ++++|+ +++||++|... .|++++. .    . .+.+ ......|.
T Consensus         3 ~ll~~~~~-~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECCC-eEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            35555554 49999997766655555567899 999996 56899999764 5777774 3    2 3333 33346899


Q ss_pred             cEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce--
Q 018705          136 DVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK--  211 (351)
Q Consensus       136 ~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~--  211 (351)
                      ++++|+ +|+||+++..                 .++|.++++++...+.+. ..+..|++|+++|++..||+++...  
T Consensus        81 glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~  143 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA  143 (316)
T ss_dssp             EEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             EEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence            999996 6789999975                 468999998765555544 4678999999999777899999753  


Q ss_pred             eEEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceE
Q 018705          212 RYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR  290 (351)
Q Consensus       212 ~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                      +++..+......+.+....-..|.++++|+ +++||++...                                    ...
T Consensus       144 ~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~------------------------------------~~~  187 (316)
T 1ijq_A          144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------------LHS  187 (316)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------------TTE
T ss_pred             eEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC------------------------------------CCe
Confidence            444432221223333322224699999996 5689998743                                    136


Q ss_pred             EEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705          291 VVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       291 v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      |.++|. +|+..+.+....+ ....+.++..++++||+....+++|.+++..
T Consensus       188 I~~~d~-dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          188 ISSIDV-NGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             EEEEET-TSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEEec-CCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence            889999 8865544432111 1334667777889999999999999999863

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.66  E-value=1.8e-14  Score=131.98  Aligned_cols=178  Identities=15%  Similarity=0.081  Sum_probs=124.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-----cCCccccceEEcC-CCCEEEEeCC------------
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTK-DGGVILCDNE------------  113 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-----~~~~p~~gl~~d~-~G~L~v~d~~------------  113 (351)
                      ..|.+|+++++++.||++...++|+++|+++++++.+..     ....|+ ++++|+ +|+||+++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            368899999547999999887889999987676655532     124688 999999 9999999864            


Q ss_pred             ------CCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC---Ce
Q 018705          114 ------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---KE  181 (351)
Q Consensus       114 ------~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---~~  181 (351)
                            .+++++++ ++ .+.+......||+|++++||+ +|++++.                 .++|++|+.++   ++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~~~~~~  221 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEGPKKGT  221 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSSTTTTC
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcCCc
Confidence                  35888886 46 555544457899999999985 9999875                 35899998764   34


Q ss_pred             EEEeecCccccceEEEcCCCCEEEEEecc----------e-eEEeecCCCCc-eeEEecc--C-CCCCCceEECCCCCEE
Q 018705          182 TTVLHEGFYFANGIALSKNEDFVVVCESW----------K-RYWLKGDRAGI-LDAFIEN--L-PGGPDNINLAPDGSFW  246 (351)
Q Consensus       182 ~~~~~~~~~~~ngi~~~~dg~~lyv~~~~----------~-~~~i~~~~~~~-~~~~~~~--~-~g~pd~i~~d~~G~lw  246 (351)
                      .+.+.. ...|+||+++++|+ ||+++..          . ++..-++. ++ .+.+...  . ...+.+++. .+|+||
T Consensus       222 ~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~  297 (322)
T 2fp8_A          222 AEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLY  297 (322)
T ss_dssp             EEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEE
T ss_pred             cceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEE
Confidence            444433 22399999999998 9998865          2 33333332 33 2333221  1 123556666 478999


Q ss_pred             EEEec
Q 018705          247 IGLIK  251 (351)
Q Consensus       247 va~~~  251 (351)
                      |+...
T Consensus       298 v~~~~  302 (322)
T 2fp8_A          298 IGTLF  302 (322)
T ss_dssp             EECSS
T ss_pred             EeecC
Confidence            99643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.64  E-value=1.3e-13  Score=130.58  Aligned_cols=222  Identities=13%  Similarity=0.114  Sum_probs=155.1

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCCC------eEEe-cCCCCC
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG------VEAI-VPDASF  133 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~g------~~~l-~~~~~~  133 (351)
                      ...|+++.. ..|.+++..+.....+......|. +|++|+ +++||++|...+ |++++.+|      .+.+ ......
T Consensus        83 ~~~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           83 IAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             SCEEEEEET-TEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred             cceeEEecc-ceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            345555554 579999986666655555567899 999995 678999997654 66666432      2333 334478


Q ss_pred             cccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce
Q 018705          134 TNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       134 ~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      |.+|++|+ .|+||++|..                 .++|.+++++++..+.+. ..+..|+||+++|.+..||+++...
T Consensus       161 p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             cccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence            99999998 6799999976                 468999998866555544 4678899999999777899999753


Q ss_pred             --eEEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCc
Q 018705          212 --RYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAG  288 (351)
Q Consensus       212 --~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
                        +++..+......+.+....-..|.||++|. +++||++...                                    .
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~------------------------------------~  267 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------------L  267 (400)
T ss_dssp             SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------------T
T ss_pred             CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC------------------------------------C
Confidence              555443222223333322224699999995 5689998643                                    1


Q ss_pred             eEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          289 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       289 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                      ..|.++|. +|.....+....+. .....++..+++.||+....+..|.+++.
T Consensus       268 ~~I~~~d~-dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          268 HSISSIDV-NGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             TEEEEEET-TSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             CEEEEEeC-CCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence            36889999 88655554332111 34456777789999999999999999984

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=7e-14  Score=128.63  Aligned_cols=229  Identities=7%  Similarity=-0.011  Sum_probs=156.6

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEe-CCCCeEEEcC-CC-e-EE
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD-NEKGLLKVTE-EG-V-EA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d-~~~gl~~~~~-~g-~-~~  126 (351)
                      ..|++++++  ++.+|+... ++.|..+|.++++...-......|. +++++++|+||+++ ..+.+..++. ++ + ..
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            357899986  688888765 6889999998887743224457799 99998889999999 5567888885 55 3 33


Q ss_pred             ecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705          127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       127 l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg  201 (351)
                      +....     ..|.++++ .++++|+++..                ..+.|.++|++++++.........|++++++++|
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG  183 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYN  183 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTS
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCC
Confidence            43321     27999999 67899999752                0358999999988876555555679999999999


Q ss_pred             CEEEEEecc-----------eeEEeecCCCCceeEEeccCC--CCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHH
Q 018705          202 DFVVVCESW-----------KRYWLKGDRAGILDAFIENLP--GGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       202 ~~lyv~~~~-----------~~~~i~~~~~~~~~~~~~~~~--g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      + +|++...           +.+.+-+...++..... ..+  ..|.+++++++|+ +|++..                 
T Consensus       184 ~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~~~g~~p~~la~~~d~~~lyv~~~-----------------  244 (328)
T 3dsm_A          184 K-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KFKLGDWPSEVQLNGTRDTLYWINN-----------------  244 (328)
T ss_dssp             E-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-ECCTTCCCEEEEECTTSCEEEEESS-----------------
T ss_pred             C-EEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ecCCCCCceeEEEecCCCEEEEEcc-----------------
Confidence            7 8887653           33333233334432222 122  2689999998764 888732                 


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEe----cCCCeEEEEeC
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLAS----LQSNFIGILPL  341 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~----~~~~~i~~~~~  341 (351)
                                            .|.++|++++++...-..+.+  ...+.++..+  +++||++.    ..++.|.+++.
T Consensus       245 ----------------------~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          245 ----------------------DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             ----------------------SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             ----------------------EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence                                  377889855554210001111  2346666654  68999998    67889999997


Q ss_pred             CC
Q 018705          342 DG  343 (351)
Q Consensus       342 ~~  343 (351)
                      .+
T Consensus       301 ~g  302 (328)
T 3dsm_A          301 QG  302 (328)
T ss_dssp             TC
T ss_pred             CC
Confidence            63

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.64  E-value=3.3e-14  Score=134.59  Aligned_cols=182  Identities=14%  Similarity=0.121  Sum_probs=127.0

Q ss_pred             cCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCC----eEEEE-eecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCC
Q 018705           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNE----TLVNW-KHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g----~~~~~-~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~  122 (351)
                      +..|.++++|+.++.||.. ..+++|++++..+.    ..+.+ ......|. ||++|. .++||++|...+ +.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            6789999999777877654 56789999998542    22333 22446799 999997 779999998765 5555566


Q ss_pred             C--eEEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEE
Q 018705          123 G--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIAL  197 (351)
Q Consensus       123 g--~~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~  197 (351)
                      |  .+.+. .....|++|++|| +|.||+++...                .++|+++++++...+.+ ...+..|+||++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~~~~~~l~~P~glav  253 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  253 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS----------------SCCEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCC----------------CCEEEEEeCCCCccEEEEECCCCceEEEEE
Confidence            6  44443 3447899999998 57899999641                25799999876554444 456789999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEecc--CCCCCCceEECCCCCEEEEEe
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++++.||++++.. +++..+......+.+...  .-..|.+++++. +++|++..
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~  308 (400)
T 3p5b_L          254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDI  308 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEES
T ss_pred             EeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecC
Confidence            99888999999876 555543322333444332  224688999964 56777764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=5.9e-14  Score=126.56  Aligned_cols=176  Identities=13%  Similarity=0.158  Sum_probs=124.0

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEee-----cCCccccceEEcCCCCEEEEeC------------
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKDGGVILCDN------------  112 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~-----~~~~p~~gl~~d~~G~L~v~d~------------  112 (351)
                      ...|.+++++ .+|.+|++.. +++|+++|+++|+++.+..     ....|+ ++++|++|++|+++.            
T Consensus        68 ~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           68 SHHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             CSSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCcccccccccccc
Confidence            3568899999 4677888775 5789999998888765532     124578 999999999999864            


Q ss_pred             ------CCCeEEEcCCC-eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeE--
Q 018705          113 ------EKGLLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKET--  182 (351)
Q Consensus       113 ------~~gl~~~~~~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~--  182 (351)
                            ..++++++++| .+.+......|+++++++||+++++++.                 .++|++|+.+ ++++  
T Consensus       146 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~-----------------~~~i~~~~~~~~g~~~~  208 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTG-----------------DNATHRYCLNARGETEY  208 (296)
T ss_dssp             CCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETT-----------------TTEEEEEEECSSSCEEE
T ss_pred             ccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCC-----------------CCeEEEEEECCCCcCcC
Confidence                  23788888768 6666555578999999999987788764                 4578888864 4544  


Q ss_pred             --EEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCc-eeEEeccCCCCCCceEE-CCCC-CEEEEEe
Q 018705          183 --TVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGI-LDAFIENLPGGPDNINL-APDG-SFWIGLI  250 (351)
Q Consensus       183 --~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~-~~~~~~~~~g~pd~i~~-d~~G-~lwva~~  250 (351)
                        +.+......|+||+++++|+ +|++. .+.+.+-++. ++ ...+.  .+..|.++++ +++| .||+++.
T Consensus       209 ~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~~~~~-g~~~~~~~--~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          209 QGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHVLTPD-GDELGRVL--TPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEEECTT-SCEEEEEE--CSSCCCEEEEESTTSCEEEEEET
T ss_pred             CCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEEECCC-CCEEEEEE--CCCCceeEEEECCCCCEEEEEcC
Confidence              22222345789999999998 99988 4433333333 33 23332  2222788888 4666 4999864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.63  E-value=5.4e-14  Score=130.85  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=112.8

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee------cCCccccceEEcCC----CCEEEEe
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKD----GGVILCD  111 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~------~~~~p~~gl~~d~~----G~L~v~d  111 (351)
                      .++.++.+ +..|++++++ .+|.+|++...|+|++++  +++.+.+..      ....|+ ||+++++    +.|||++
T Consensus        22 ~~~~va~~-l~~P~~ia~~-pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFL-PDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             CEEEEECC-CSCEEEEEEC-TTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEE
T ss_pred             EEEEEECC-CCCceEEEEc-CCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEE
Confidence            45667776 7899999999 467799999899999998  565544322      235689 9999997    7899998


Q ss_pred             CC------CCeEEEcCC-C-e---EE----ec--CC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE
Q 018705          112 NE------KGLLKVTEE-G-V---EA----IV--PD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus       112 ~~------~gl~~~~~~-g-~---~~----l~--~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                      ..      ..+++++.+ + .   +.    +.  .. ...+++|++++||.||+++..... . ....+  .....|+|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~-~-~~~~d--~~~~~g~I~  172 (352)
T 2ism_A           97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE-R-ELAQD--LASLGGKIL  172 (352)
T ss_dssp             EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC-G-GGGGC--TTCSSSEEE
T ss_pred             ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC-C-ccccC--CCCCceEEE
Confidence            63      467787742 2 1   22    22  11 257899999999999999854210 0 00000  112357899


Q ss_pred             EEeCCC-------------CeEEEeecCccccceEEEcC-CCCEEEEEecce
Q 018705          174 KYDPKL-------------KETTVLHEGFYFANGIALSK-NEDFVVVCESWK  211 (351)
Q Consensus       174 ~~d~~~-------------~~~~~~~~~~~~~ngi~~~~-dg~~lyv~~~~~  211 (351)
                      ++++++             .+.+.+..++.+|+|+++++ +|+ ||+++...
T Consensus       173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~  223 (352)
T 2ism_A          173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGP  223 (352)
T ss_dssp             EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC
T ss_pred             EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCC
Confidence            999874             24456677888999999999 555 99999765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.63  E-value=2.3e-13  Score=138.75  Aligned_cols=228  Identities=14%  Similarity=0.101  Sum_probs=159.2

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCCC------eEEe
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG------VEAI  127 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~g------~~~l  127 (351)
                      +.+++ ....|+++... .|.+++...+....+......|. +|++|. +++||++|...+ |++++.+|      .+.+
T Consensus       389 C~~~~-~~p~Ll~an~~-~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          389 CKAVG-SIAYLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             CEETT-SCCEEEEECBS-SEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred             eeecc-ccccccccccc-ceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            44444 34456665554 48899886666665555567788 999996 678999998765 56666432      2333


Q ss_pred             -cCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEE
Q 018705          128 -VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFV  204 (351)
Q Consensus       128 -~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~l  204 (351)
                       ......|++|++|+.+ +||++|..                 .++|.++++++...+.+. ..+..|+||++++.+..|
T Consensus       466 i~~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          466 ISRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             EecCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCE
Confidence             3345789999999865 89999976                 468999998866655554 567889999999987789


Q ss_pred             EEEecce--eEEeecCCCCceeEEeccCCCCCCceEEC-CCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhccc
Q 018705          205 VVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  281 (351)
Q Consensus       205 yv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
                      ||++.+.  +++..+........+....-..|.||++| .+|+||++...                              
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~------------------------------  578 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------  578 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------
T ss_pred             EEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC------------------------------
Confidence            9999764  66655432223334443222469999999 56789998643                              


Q ss_pred             CCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          282 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       282 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                            ...|.+++. +|+....+....+ ......++...+++||++....+.|.+++.
T Consensus       579 ------~~~I~~~d~-dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          579 ------LHSISSIDV-NGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ------TTEEEEEET-TSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ------CCcEEEEec-CCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence                  135889999 8865555532222 234456777788999999999999999974

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.63  E-value=1.8e-13  Score=125.56  Aligned_cols=219  Identities=13%  Similarity=0.038  Sum_probs=149.9

Q ss_pred             eEEEEEcCCEEEEEEcCCCe--EEEEeecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCCC--e--EEecCCCCCccc
Q 018705           65 ALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG--V--EAIVPDASFTND  136 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~--~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~g--~--~~l~~~~~~~n~  136 (351)
                      .|+++.. ..|.+++.+++.  ..........+. ++.+|. +++||++|...+ |.+++.+|  .  ..+......|++
T Consensus         6 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYANR-RDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEECE-EEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEcc-CeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            4555443 469999986542  222223334677 899986 679999997754 66666544  2  233444478999


Q ss_pred             EEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecc-e-e
Q 018705          137 VIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW-K-R  212 (351)
Q Consensus       137 l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~-~-~  212 (351)
                      +++|+ +|+||+++..                 .++|.++++++...+.+. ..+..|+||+++|.+..||+++.. . +
T Consensus        84 lavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~  146 (318)
T 3sov_A           84 LACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK  146 (318)
T ss_dssp             EEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred             EEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence            99997 6799999975                 468999998765544444 667899999999977789999965 2 5


Q ss_pred             EEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEE
Q 018705          213 YWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  291 (351)
Q Consensus       213 ~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  291 (351)
                      ++..+......+.+....-..|.++++|+ +++||++...                                    ...|
T Consensus       147 I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~------------------------------------~~~I  190 (318)
T 3sov_A          147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK------------------------------------LNFI  190 (318)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------------TTEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC------------------------------------CCEE
Confidence            44433221222333322223689999996 5689999743                                    1368


Q ss_pred             EEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705          292 VKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       292 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      .++|. +|+..+.+....   ...+.++..+++.||+....+..|.+++..
T Consensus       191 ~~~d~-dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          191 HKSNL-DGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EEEET-TSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEcC-CCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence            89998 875544444311   334667777889999999999999999974

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.62  E-value=3.4e-13  Score=122.87  Aligned_cols=218  Identities=15%  Similarity=0.181  Sum_probs=143.6

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCCCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS  132 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~~~  132 (351)
                      +.+++  ++.+|+++.+++|+++|++ |+.... ........ .++.+++|++|++...++++.++++|  ...+.....
T Consensus       102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~  177 (330)
T 3hxj_A          102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDA  177 (330)
T ss_dssp             CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSC
T ss_pred             CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCC
Confidence            34444  7899999999999999986 654322 22222334 78889999999999878999999667  333332235


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccceEEEcCCCCEEEEEecce
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ....+++|++|++|++. .                   +|+++|+ +++.. ..........+++++++|. +|++...+
T Consensus       178 ~~~~~~~d~~g~l~v~t-~-------------------~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~  235 (330)
T 3hxj_A          178 ITSAASIGKDGTIYFGS-D-------------------KVYAINP-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDG  235 (330)
T ss_dssp             CCSCCEECTTCCEEEES-S-------------------SEEEECT-TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTT
T ss_pred             ceeeeEEcCCCEEEEEe-C-------------------EEEEECC-CCcEEEEEccCCcceeceEECCCCe-EEEEcCCC
Confidence            67788999999999976 3                   6888885 44433 2222234466788999887 99987654


Q ss_pred             -eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceE
Q 018705          212 -RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR  290 (351)
Q Consensus       212 -~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                       .+.+. ........+. .....+..+.+|++|+||+++..                                     ++
T Consensus       236 gl~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~-------------------------------------gg  276 (330)
T 3hxj_A          236 HLYAIN-PDGTEKWRFK-TGKRIESSPVIGNTDTIYFGSYD-------------------------------------GH  276 (330)
T ss_dssp             EEEEEC-TTSCEEEEEE-CSSCCCSCCEECTTSCEEEECTT-------------------------------------CE
T ss_pred             eEEEEC-CCCCEeEEee-CCCCccccceEcCCCeEEEecCC-------------------------------------CC
Confidence             44443 2222222222 12233456788989999999643                                     47


Q ss_pred             EEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCCC
Q 018705          291 VVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       291 v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      +.++|+ +|+.+..+..+..    .+.+++. .+|+||+|+. .+.+...+....
T Consensus       277 l~~~d~-~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~-~G~~~~~~~~~~  325 (330)
T 3hxj_A          277 LYAINP-DGTEKWNFETGSW----IIATPVIDENGTIYFGTR-NGKFYALFNLEH  325 (330)
T ss_dssp             EEEECT-TSCEEEEEECSSC----CCSCCEECTTCCEEEECT-TSCEEEEEC---
T ss_pred             EEEECC-CCcEEEEEEcCCc----cccceEEcCCCEEEEEcC-CCeEEEEecccc
Confidence            999999 9998877765432    3445555 6789999996 444555554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=4.4e-14  Score=134.13  Aligned_cols=180  Identities=13%  Similarity=0.181  Sum_probs=127.5

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCC--EEEEEEcCCCeE-EEE----eecCCccccceEEcC-CCCEEEEeCCCCeEEEcC-
Q 018705           51 VNHPEDVSVVVSKGALYTATRDG--WVKYFILHNETL-VNW----KHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g--~I~~~d~~~g~~-~~~----~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~-  121 (351)
                      ...|. ++++++++.+|++..++  +|++++..++.. ..+    ......|. ++++++ +|+||+++..+.+++++. 
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            35577 99998778899887755  899999865533 232    11346789 999999 789999887666888886 


Q ss_pred             CC-eEEe----cCCC--CCcc-cEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----
Q 018705          122 EG-VEAI----VPDA--SFTN-DVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----  188 (351)
Q Consensus       122 ~g-~~~l----~~~~--~~~n-~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----  188 (351)
                      ++ ...+    ....  ..|. ++++++ +|+||+++..                 .++|++|+++. +...+...    
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~g-~~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPDG-ECEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTC-CEEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecCC-CEEEEEeCCCCC
Confidence            44 5444    2211  2344 999999 5899999975                 46899999874 44444322    


Q ss_pred             -----------ccccceEEEcCCCCEEEEEec-ce-eEEeecCCCCceeEEecc--C------------CCCCCceEECC
Q 018705          189 -----------FYFANGIALSKNEDFVVVCES-WK-RYWLKGDRAGILDAFIEN--L------------PGGPDNINLAP  241 (351)
Q Consensus       189 -----------~~~~ngi~~~~dg~~lyv~~~-~~-~~~i~~~~~~~~~~~~~~--~------------~g~pd~i~~d~  241 (351)
                                 +..|+||+++++|+ ||+++. .+ +++.-+...+....+...  .            -..|.++++|+
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence                       56799999999998 999998 66 555443223444444321  0            12588999999


Q ss_pred             CCCEEEEEec
Q 018705          242 DGSFWIGLIK  251 (351)
Q Consensus       242 ~G~lwva~~~  251 (351)
                      +|+|||+...
T Consensus       390 ~g~lyVad~~  399 (409)
T 3hrp_A          390 EGGYWIAEAW  399 (409)
T ss_dssp             SSEEEEEEST
T ss_pred             CCCEEEEECC
Confidence            9999999754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.62  E-value=5.6e-14  Score=140.10  Aligned_cols=184  Identities=13%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             CcCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCe-EEEEe-ecCCccccceEEcC-CCCEEEEeCCCCeE-EEcCCC-
Q 018705           50 CVNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNET-LVNWK-HIDSQSLLGLTTTK-DGGVILCDNEKGLL-KVTEEG-  123 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~-~~~~~-~~~~~p~~gl~~d~-~G~L~v~d~~~gl~-~~~~~g-  123 (351)
                      ++..|.++++|+.++.+|++ ..+++|++++.++.. .+.+. .....|. ||++|. .++||++|...+.+ +++.+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            47789999999878887764 557899999985432 23332 2336799 999998 56899999876654 445677 


Q ss_pred             -eEEec-CCCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcC
Q 018705          124 -VEAIV-PDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSK  199 (351)
Q Consensus       124 -~~~l~-~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~  199 (351)
                       .+++. .....|++|++||. |.||+||...                .++|++.++++...+.+. ..+..|+||++++
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~  180 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDY  180 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCC----------------CCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence             55554 44588999999995 7899999641                358999998755444443 5688999999999


Q ss_pred             CCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          200 NEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       200 dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++.||+++... +++..+......+.+....-..|.+++++.+ ++|++...
T Consensus       181 ~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~  232 (619)
T 3s94_A          181 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWS  232 (619)
T ss_dssp             TTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTT
T ss_pred             cCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence            888899999877 6665543222333333322246899999866 89998643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.61  E-value=1e-13  Score=138.24  Aligned_cols=184  Identities=11%  Similarity=0.096  Sum_probs=131.5

Q ss_pred             CcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeec-CCccccceEEcC-CCCEEEEeCCCCeEEEc-CCC--
Q 018705           50 CVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEKGLLKVT-EEG--  123 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~-~~g--  123 (351)
                      .+..|.+|++|+.++.+|++. ..++|+++++++...+.+... ...|. ||++|. .++||++|...+.+.+. .+|  
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            366788999997788887654 588999999865444444433 36899 999996 67899999877655554 566  


Q ss_pred             eEEecC-CCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCC
Q 018705          124 VEAIVP-DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKN  200 (351)
Q Consensus       124 ~~~l~~-~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~d  200 (351)
                      .+++.. ....|++|++||. |.||+||...                .++|++.++++...+.+ ...+..||||+++++
T Consensus       426 ~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~  489 (619)
T 3s94_A          426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAALDGSDRVVLVNTSLGWPNGLALDYD  489 (619)
T ss_dssp             CEEEECTTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             EEEEEECCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEccCCCccEEEEeCCCCCCeeeEEccc
Confidence            555543 4588999999995 8999999751                25799998875444444 346889999999998


Q ss_pred             CCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          201 EDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       201 g~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++.||++++.. +++..+......+.+....-..|.+++++. ++||++...
T Consensus       490 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~-~~ly~tD~~  540 (619)
T 3s94_A          490 EGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG-DYVYWTDWQ  540 (619)
T ss_dssp             TTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET-TEEEEECTT
T ss_pred             CCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC-CEEEEeecC
Confidence            88899999877 555433221222333322234689999975 489998753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=2.2e-14  Score=131.88  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=121.7

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCC--eEEEEee---------cCCccccceEEcC-CCCEEEEeC
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNE--TLVNWKH---------IDSQSLLGLTTTK-DGGVILCDN  112 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g--~~~~~~~---------~~~~p~~gl~~d~-~G~L~v~d~  112 (351)
                      ...+.+..|.++++|+ +|.+|++. .+++|.++++++.  .+..+..         ....|. ++++|+ +|+|||++.
T Consensus        85 ~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             ECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEEC
T ss_pred             cCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeC
Confidence            3445577899999994 56677765 4789999998443  2334321         123699 999998 899999995


Q ss_pred             --CCCeEEEcCCC--eEEecC----------CCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705          113 --EKGLLKVTEEG--VEAIVP----------DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (351)
Q Consensus       113 --~~gl~~~~~~g--~~~l~~----------~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  177 (351)
                        ...+.+++++|  ...+..          ....|++|++|++ |++|+++..                 .++|.+|++
T Consensus       163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~~I~~~~~  225 (329)
T 3fvz_A          163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NGRIQCFKT  225 (329)
T ss_dssp             SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TTEEEEEET
T ss_pred             CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CCEEEEEEC
Confidence              45677777777  444431          1256999999998 899999976                 568999999


Q ss_pred             CCCeEEEeec---CccccceEEEcC------CCCEEEEEecce-eEEeecCCCCce-eEEe--ccCCCCCCceEECCCCC
Q 018705          178 KLKETTVLHE---GFYFANGIALSK------NEDFVVVCESWK-RYWLKGDRAGIL-DAFI--ENLPGGPDNINLAPDGS  244 (351)
Q Consensus       178 ~~~~~~~~~~---~~~~~ngi~~~~------dg~~lyv~~~~~-~~~i~~~~~~~~-~~~~--~~~~g~pd~i~~d~~G~  244 (351)
                      ++|+......   ....+.+++++|      +|+ +|+++... ++.+-+...++. ..+.  ......|.++++|++|+
T Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          226 DTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             TTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred             CCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence            8666543331   123455666666      554 44444433 333322222332 2221  11223588999999999


Q ss_pred             EEEEEec
Q 018705          245 FWIGLIK  251 (351)
Q Consensus       245 lwva~~~  251 (351)
                      +||+...
T Consensus       305 lyvad~~  311 (329)
T 3fvz_A          305 VYIGDAH  311 (329)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=1.1e-13  Score=125.34  Aligned_cols=179  Identities=13%  Similarity=0.117  Sum_probs=124.5

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eec-----CCccccceEEcCCCCEEEEeCC------------
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHI-----DSQSLLGLTTTKDGGVILCDNE------------  113 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~-----~~~p~~gl~~d~~G~L~v~d~~------------  113 (351)
                      ..|.+++++++++.+|++...++|++++.+ ++++.+ ...     ...|. ++++|++|++|+++..            
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCcccccccccccc
Confidence            568899999543899999877789999997 877655 321     23578 9999999999999865            


Q ss_pred             ----CCeEEEcCCC-eEEecCCCCCcccEEEc----cCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeE
Q 018705          114 ----KGLLKVTEEG-VEAIVPDASFTNDVIAA----SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKET  182 (351)
Q Consensus       114 ----~gl~~~~~~g-~~~l~~~~~~~n~l~~d----~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~  182 (351)
                          .+++++++++ .+.+......|++++++    ++| .+|+++..                 .++|++|+.+ +++.
T Consensus       149 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKGPAKI  211 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEETTEE
T ss_pred             cCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECCCCCcc
Confidence                3688888667 55544333678999999    999 69999864                 3579998864 3443


Q ss_pred             E---Eee---cCc-cccceEEEcCCCCEEEEEecce-eEEeecCCCCce-eEEeccCCCCCCceEECCCCC-EEEEEec
Q 018705          183 T---VLH---EGF-YFANGIALSKNEDFVVVCESWK-RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGS-FWIGLIK  251 (351)
Q Consensus       183 ~---~~~---~~~-~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~-lwva~~~  251 (351)
                      .   .+.   ... ..|++|+++++|+ +|+++... .+..-+...++. ..+. .....|.+++++++|+ ||++...
T Consensus       212 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          212 ENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCC
Confidence            2   111   111 5689999999997 99987543 333333322332 2222 1114578899999998 9999753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.59  E-value=3e-13  Score=122.74  Aligned_cols=181  Identities=12%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecC--------CccccceEE---cCCCCEEEE-eC-----
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHID--------SQSLLGLTT---TKDGGVILC-DN-----  112 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~--------~~p~~gl~~---d~~G~L~v~-d~-----  112 (351)
                      ...||++.||+.++++|+++ ..|+|.++++.++..+......        ..+. ||.+   |++|+|||+ +.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            45799999997789999988 5899999999766554442221        1467 9999   799999994 41     


Q ss_pred             --------CCCeEEEcCC----C-eEEecC--------------CCCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705          113 --------EKGLLKVTEE----G-VEAIVP--------------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (351)
Q Consensus       113 --------~~gl~~~~~~----g-~~~l~~--------------~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  165 (351)
                              ...+++++..    + .....+              ....+||+++|++|++|++++.              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    2458888844    5 222111              1135999999999999999874              


Q ss_pred             ccCC-ceEEEEeCCCCeEEEeec------CccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEec--c---C
Q 018705          166 GKPY-GQLRKYDPKLKETTVLHE------GFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIE--N---L  230 (351)
Q Consensus       166 ~~~~-g~l~~~d~~~~~~~~~~~------~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~--~---~  230 (351)
                         . +.|++++|++.....+..      ....+|||+++|||+.|+++++.+   ++.+..+  ...++-..  +   .
T Consensus       157 ---~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p--v~~~v~~~~~G~~~~  231 (334)
T 2p9w_A          157 ---GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP--YAWPEPVKINGDFGT  231 (334)
T ss_dssp             ---SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS--SCCCEECEESSCCCC
T ss_pred             ---CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC--cceeecccccCCccc
Confidence               3 679999998654544321      123578999999999999998855   3443321  11011111  1   1


Q ss_pred             CCCCCce-EECCCCCE-EEEEec
Q 018705          231 PGGPDNI-NLAPDGSF-WIGLIK  251 (351)
Q Consensus       231 ~g~pd~i-~~d~~G~l-wva~~~  251 (351)
                      ...+|+| ....+|++ +|+...
T Consensus       232 ~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          232 LSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             CTTEEEEEEEEETTEEEEEEEET
T ss_pred             ccCcccccccccCCEEEEEEcCC
Confidence            1247885 55678886 777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.58  E-value=1e-13  Score=125.48  Aligned_cols=178  Identities=9%  Similarity=0.075  Sum_probs=125.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-----CCccccceEEcCCCCEEEEeCC------------C
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNE------------K  114 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~d~~------------~  114 (351)
                      ..|.+++++ .+|.+|++. +++|+++|+++++++.+...     ..+|+ ++++|++|++|+++..            .
T Consensus        54 ~~~~~i~~~-~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           54 APVSSVALR-QSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SCEEEEEEB-TTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CceEEEEEC-CCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCc
Confidence            458899999 466699987 56799999988888766432     23578 8999999999998732            3


Q ss_pred             CeEEEcCCC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeC--CCCeEE---Eee-
Q 018705          115 GLLKVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETT---VLH-  186 (351)
Q Consensus       115 gl~~~~~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~---~~~-  186 (351)
                      ++++++++| ...+......||++++++|| .+|++++.                 .++|++|+.  .+|++.   .+. 
T Consensus       131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~-----------------~~~i~~~~~d~~~G~~~~~~~~~~  193 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL-----------------SYSVDAFDYDLQTGQISNRRSVYK  193 (297)
T ss_dssp             EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG-----------------GTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC-----------------CCcEEEEeccCCCCcccCcEEEEE
Confidence            588888777 55554444789999999999 59999875                 357888863  556542   222 


Q ss_pred             --cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCC-CCCCceEEC-CCC-CEEEEEec
Q 018705          187 --EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP-GGPDNINLA-PDG-SFWIGLIK  251 (351)
Q Consensus       187 --~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d-~~G-~lwva~~~  251 (351)
                        .....|+|++++++|+ ||++...+ ++..-++..++..... ..+ ..|.+++++ +++ .|||++..
T Consensus       194 ~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i-~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          194 LEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTV-KLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEE-ECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEE-ECCCCCceEEEEeCCCCCEEEEEcCC
Confidence              1235799999999997 99998655 5444444334433222 233 346788886 565 59999865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.57  E-value=3.7e-13  Score=134.33  Aligned_cols=186  Identities=12%  Similarity=0.072  Sum_probs=130.6

Q ss_pred             CCcCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEE-EEee------cCCccccceEEcCC-CCEEEEeCCCCeEEE
Q 018705           49 GCVNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLV-NWKH------IDSQSLLGLTTTKD-GGVILCDNEKGLLKV  119 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~-~~~~------~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~  119 (351)
                      ..+..+.+|++|+.++.+|.+ ...++|++++.++...+ .+..      ....|. ||++|.. ++||++|...+.+.+
T Consensus       337 ~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v  415 (628)
T 4a0p_A          337 HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINV  415 (628)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred             hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEE
Confidence            335678899999878877664 46789999998443322 2322      235799 9999987 579999988766655


Q ss_pred             c-CCC--eEEec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccc
Q 018705          120 T-EEG--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFAN  193 (351)
Q Consensus       120 ~-~~g--~~~l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~n  193 (351)
                      . .+|  .+++. .....|++|+++| +|.||+||....               .++|++.++++...+.+. ..+..|+
T Consensus       416 ~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~---------------~~~I~r~~~dG~~~~~l~~~~l~~P~  480 (628)
T 4a0p_A          416 TRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQER---------------SPKIERAALDGTEREVLFFSGLSKPI  480 (628)
T ss_dssp             EETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETT---------------EEEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             EECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCC---------------CCeEEEEeCCCCCcEEEEeccCCCcc
Confidence            5 577  44443 3457899999999 799999997511               137999998755454444 4688999


Q ss_pred             eEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          194 GIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ||+++++++.||+++... +++..+......+.+.......|.+++++. |+||++...
T Consensus       481 gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~  538 (628)
T 4a0p_A          481 ALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQ  538 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETT
T ss_pred             EEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECC
Confidence            999999988899999876 544433222233444433234689999986 889998743

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.56  E-value=7.8e-12  Score=113.83  Aligned_cols=236  Identities=13%  Similarity=0.115  Sum_probs=149.3

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeE-EEEeecCCccccc-eEEcCCCCEEEEeCCC----CeEEEcC-C
Q 018705           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHIDSQSLLG-LTTTKDGGVILCDNEK----GLLKVTE-E  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~-~~~~~~~~~p~~g-l~~d~~G~L~v~d~~~----gl~~~~~-~  122 (351)
                      ...| +++++|++..+|++.. ++.|+.+|..+++. .........|. . ++++++|+.+++....    .+..++. +
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            3456 9999977777888776 78999999988875 44444556677 6 9999999744454444    3555564 5


Q ss_pred             C--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCce-EEEEeCC-CCeE----EEeecCccccc
Q 018705          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQ-LRKYDPK-LKET----TVLHEGFYFAN  193 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~-~~~~----~~~~~~~~~~n  193 (351)
                      +  ...+... ..|++++++|||+ +|+++..                 .+. +..|+.+ .+.+    .........|.
T Consensus       118 ~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~-----------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          118 NKFISTIPIP-YDAVGIAISPNGNGLILIDRS-----------------SANTVRRFKIDADGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             TEEEEEEECC-TTEEEEEECTTSSCEEEEEET-----------------TTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred             CCeEEEEECC-CCccceEECCCCCEEEEEecC-----------------CCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence            5  3434333 5789999999995 8888754                 123 4444322 1222    12223345689


Q ss_pred             eEEEcCCCCEEEEEecce-eEEeecCCCCc----eeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHH
Q 018705          194 GIALSKNEDFVVVCESWK-RYWLKGDRAGI----LDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~----~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      +++++|||+.+|++.... .+.+-+...++    ...+.  ....|.+++++++|+ +|++...                
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~----------------  241 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES----------------  241 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS----------------
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC----------------
Confidence            999999999899987644 33332222222    22222  235688999999998 7777432                


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeE--EEEEECC---CCCcccceeEEEE--ECCEEEEEecCCCeEEEEe
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDP---DATYISFVTSAAE--FDGNLYLASLQSNFIGILP  340 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~---~g~~~~~~~~~~~--~~g~L~ig~~~~~~i~~~~  340 (351)
                                          .+.|..+|.++++.  +..+...   ..........+..  ++..||+++...+.|.+++
T Consensus       242 --------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          242 --------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             --------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence                                24578889856776  4444321   1111111222333  4567999998888999999


Q ss_pred             CCCC
Q 018705          341 LDGP  344 (351)
Q Consensus       341 ~~~~  344 (351)
                      +.+.
T Consensus       302 ~~~~  305 (331)
T 3u4y_A          302 ISGK  305 (331)
T ss_dssp             TTSC
T ss_pred             ecCC
Confidence            8754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.55  E-value=2.7e-12  Score=117.99  Aligned_cols=233  Identities=13%  Similarity=0.213  Sum_probs=143.7

Q ss_pred             cCCCceEEEeeCCCeEEEEEc---CCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCC-EEEEeCCCCeEE-Ec--
Q 018705           51 VNHPEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGG-VILCDNEKGLLK-VT--  120 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~---~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~-~~--  120 (351)
                      ...|.+++++| +|.+|+...   ++.|+.|+..+++.+.+.   .....|. +++++++|+ ||++....+.++ ++  
T Consensus        39 ~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           39 TQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             CSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            46799999996 455887765   578999998777655443   2456788 999999997 888875555333 33  


Q ss_pred             CCC-eEEec---CCC---------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEee
Q 018705          121 EEG-VEAIV---PDA---------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLH  186 (351)
Q Consensus       121 ~~g-~~~l~---~~~---------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~~  186 (351)
                      .+| .+.+.   ...         ..+.+++++|||++|+++..                 .+.|..|+.+ ++++....
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEee
Confidence            355 43322   110         24678999999999888764                 3567777765 45554322


Q ss_pred             ----cCccccceEEEcCCCCEEEEEecce---e-EEeecCCCCceeEEe--ccCC------CCCCceEECCCCC-EEEEE
Q 018705          187 ----EGFYFANGIALSKNEDFVVVCESWK---R-YWLKGDRAGILDAFI--ENLP------GGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       187 ----~~~~~~ngi~~~~dg~~lyv~~~~~---~-~~i~~~~~~~~~~~~--~~~~------g~pd~i~~d~~G~-lwva~  249 (351)
                          .....|++++++|||+++|+++...   + +.+.. ..++.+...  ...+      ..|.+++++++|+ ||++.
T Consensus       180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          180 VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC-CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence                2234688999999999999976544   2 22332 123322211  1112      1255689999997 77876


Q ss_pred             ecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC--eEEEEEECCCCCcccceeEEEEE--CCE
Q 018705          250 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG--KIIRDFNDPDATYISFVTSAAEF--DGN  325 (351)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~g~~~~~~~~~~~~--~g~  325 (351)
                      ...+                                  .-.++.+++ +|  +.+..+... +   ..+..+...  +..
T Consensus       259 ~~~~----------------------------------~v~v~~~~~-~g~~~~~~~~~~~-~---~~~~~~~~spdg~~  299 (347)
T 3hfq_A          259 RGYN----------------------------------TLAVFAVTA-DGHLTLIQQISTE-G---DFPRDFDLDPTEAF  299 (347)
T ss_dssp             ETTT----------------------------------EEEEEEECG-GGCEEEEEEEECS-S---SCCCEEEECTTSSE
T ss_pred             CCCC----------------------------------EEEEEEECC-CCcEEEeEEEecC-C---CCcCeEEECCCCCE
Confidence            4311                                  112444444 55  334444332 1   124455543  446


Q ss_pred             EEEEecCCCeEEEEeCC
Q 018705          326 LYLASLQSNFIGILPLD  342 (351)
Q Consensus       326 L~ig~~~~~~i~~~~~~  342 (351)
                      ||+++...+.+..+++.
T Consensus       300 l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEe
Confidence            99998877888888554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.55  E-value=3.8e-14  Score=143.35  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCC----CeEEEEe-ecCCccccceEEc-CCCCEEEEeCCC-CeEEEcCC
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHN----ETLVNWK-HIDSQSLLGLTTT-KDGGVILCDNEK-GLLKVTEE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~----g~~~~~~-~~~~~p~~gl~~d-~~G~L~v~d~~~-gl~~~~~~  122 (351)
                      +..|++|++++.++.||++. ..++|++++..+    ...+.+. .....|. ||++| ..|+||+++... .|.+++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            57899999997788887754 567899999854    2222222 2234688 99999 567999998764 56667766


Q ss_pred             C--eEEecC-CCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEE
Q 018705          123 G--VEAIVP-DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIAL  197 (351)
Q Consensus       123 g--~~~l~~-~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~  197 (351)
                      |  .+.+.. ....|++|++|++ |.||+++...                .++|+++++++...+.+ ...+..||||++
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~l~~~~l~~PnGlav  547 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  547 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence            6  455543 3478999999985 6899998641                25788888764433333 356789999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEecc--CCCCCCceEECCCCCEEEEEe
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++++.|||++... +++..+......+.+...  ....|+++++|.+ +||++..
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~  602 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDI  602 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECS
T ss_pred             eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeC
Confidence            99887899999876 655544322333444321  2246899999875 6777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.55  E-value=1.6e-12  Score=132.46  Aligned_cols=183  Identities=14%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             cCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCC----eEEEEe-ecCCccccceEEcCCC-CEEEEeCCCC-eEEEcCC
Q 018705           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNE----TLVNWK-HIDSQSLLGLTTTKDG-GVILCDNEKG-LLKVTEE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g----~~~~~~-~~~~~p~~gl~~d~~G-~L~v~d~~~g-l~~~~~~  122 (351)
                      +..|.+|++|+.++.||+. ...++|++++..+.    ..+.+. .....|. ||++|..+ +||++|...+ |.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            6789999999767877765 45788999998542    222332 2446799 99999765 8999998765 4555566


Q ss_pred             C--eEEec-CCCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEE
Q 018705          123 G--VEAIV-PDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (351)
Q Consensus       123 g--~~~l~-~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~  197 (351)
                      |  .+++. .....|++|++|+. |.||+++...                .++|+++++++...+.+. ..+..|+||++
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~~~dG~~~~~lv~~~l~~P~GLav  565 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  565 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC----------------CCeEEEEecCCCceEEEEeCCCCCceEEEE
Confidence            6  44544 34478999999985 7999999751                257999998865555444 56789999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEecc--CCCCCCceEECCCCCEEEEEec
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~--~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++.++.|||++... +++..+......+.+...  .-..|.+|+++ +++||++...
T Consensus       566 D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~  621 (791)
T 3m0c_C          566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII  621 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECC
Confidence            98888899999876 665544322233333322  11246677775 4589998743

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.54  E-value=1.3e-12  Score=133.38  Aligned_cols=220  Identities=14%  Similarity=0.202  Sum_probs=143.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-------CCccccceEEcCCCCEEEEeCCCCeEEEcCC-----
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-------DSQSLLGLTTTKDGGVILCDNEKGLLKVTEE-----  122 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-------~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~-----  122 (351)
                      .+++.| ++|.||+++ +++|.++++++++++.+...       ..... .|..|++|+||+++..+|+++++++     
T Consensus       376 ~~i~~d-~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          376 RHIYED-KEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEC-TTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             EEEEEC-CCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            577888 789999999 46799999988888776421       12345 7889999999999988899999842     


Q ss_pred             --C-e---EEecC--CC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-c--
Q 018705          123 --G-V---EAIVP--DA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F--  189 (351)
Q Consensus       123 --g-~---~~l~~--~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~--  189 (351)
                        + .   ..+..  ..  ..+++|..|++|+||+....                 .++|++||+++++++.+... +  
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~~  515 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELTG  515 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSCG
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcCC
Confidence              2 1   12211  11  45788999999999993221                 13699999998887765322 1  


Q ss_pred             -cccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCC----ceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          190 -YFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPD----NINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       190 -~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd----~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                       ..++++..+++|. ||++...+.+.+. +..++.+.+.  ..++|.    ++..| +|+||+++..             
T Consensus       516 ~~~~~~i~~d~~g~-lWigt~~Gl~~~~-~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~-------------  577 (758)
T 3ott_A          516 EKSPNYLLCDEDGL-LWVGFHGGVMRIN-PKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTTN-------------  577 (758)
T ss_dssp             GGCEEEEEECTTSC-EEEEETTEEEEEC-C--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEESS-------------
T ss_pred             CcccceEEECCCCC-EEEEecCceEEEe-cCCCceEEec--ccCCCccceEEEEEC-CCCEEEECCC-------------
Confidence             3467888899997 9998866633222 2122222221  112333    34455 8999999753             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-E-ECCEEEEEecCCCeEEEEeCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-E-FDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~-~~g~L~ig~~~~~~i~~~~~~  342 (351)
                                               ++.+||| +...+..+..++..    ++.+. . .+|+||+|+.  +++.+++..
T Consensus       578 -------------------------Gl~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~G~l~fG~~--~Gl~~f~p~  625 (758)
T 3ott_A          578 -------------------------GLWIIDR-KTMDARQQNMTNKR----FTSLLFDPKEDCVYLGGA--DGFGISHSN  625 (758)
T ss_dssp             -------------------------CEEEEET-TTCCEEEC--CCCC----CSEEEEETTTTEEEEECB--SEEEEEEC-
T ss_pred             -------------------------CeEEEcC-CCceeEEecCCCCc----eeeeEEECCCCcEEEecC--CceEEEChh
Confidence                                     5999999 55545555434332    23333 3 3799999995  789999876


Q ss_pred             CC
Q 018705          343 GP  344 (351)
Q Consensus       343 ~~  344 (351)
                      ..
T Consensus       626 ~~  627 (758)
T 3ott_A          626 LE  627 (758)
T ss_dssp             --
T ss_pred             hc
Confidence            44

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.53  E-value=6.3e-12  Score=115.89  Aligned_cols=165  Identities=15%  Similarity=0.203  Sum_probs=115.0

Q ss_pred             CccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEe-------ecCCccccceEEcC----CCC
Q 018705           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-------HIDSQSLLGLTTTK----DGG  106 (351)
Q Consensus        39 ~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~-------~~~~~p~~gl~~d~----~G~  106 (351)
                      ....+++++++ +..|.+|++.| +|.+|++.. .|+|++++..+++.+.+.       .....++ ||++++    +|.
T Consensus        20 ~~~~~~~va~g-L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~   96 (347)
T 3das_A           20 SVKVLRTVATG-LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHM   96 (347)
T ss_dssp             CEEEEEEEECC-CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCE
T ss_pred             CCceeEEeecC-CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCE
Confidence            44567888887 89999999994 678999887 899999987667654432       1234578 999997    488


Q ss_pred             EEEEeC---CCCeEEEcC-C---------CeEEecC----C-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705          107 VILCDN---EKGLLKVTE-E---------GVEAIVP----D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus       107 L~v~d~---~~gl~~~~~-~---------g~~~l~~----~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      ||++..   ...++++.. .         ..+++..    . ......|++++||.|||+..... .. ....+  ....
T Consensus        97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~-~~-~~~qd--~~~~  172 (347)
T 3das_A           97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG-DT-GLSQD--RKSL  172 (347)
T ss_dssp             EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT-CG-GGTTC--TTCS
T ss_pred             EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC-CC-ccccC--CCCC
Confidence            999742   346777752 2         1222211    1 15677899999999999975311 00 00000  0123


Q ss_pred             CceEEEEeCCCC--------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          169 YGQLRKYDPKLK--------ETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       169 ~g~l~~~d~~~~--------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .|.|+|+++++.        ..+++..++.+|.|++++++|. ||++|.+.
T Consensus       173 ~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~  222 (347)
T 3das_A          173 GGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQ  222 (347)
T ss_dssp             TTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCS
T ss_pred             CCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCC
Confidence            678999998754        3456778899999999999987 99999764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.53  E-value=5.5e-11  Score=108.82  Aligned_cols=219  Identities=18%  Similarity=0.193  Sum_probs=147.1

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeec-C-C--------ccccceEEcCCCC-EEEEeC--CCCeE
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-D-S--------QSLLGLTTTKDGG-VILCDN--EKGLL  117 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~-~-~--------~p~~gl~~d~~G~-L~v~d~--~~gl~  117 (351)
                      ..|.+++++++++.+|++.. ++.|..+|.++++....... . .        .|. +++++++|+ +|+++.  ...++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEE
Confidence            45899999977777888765 68999999988876432222 1 1        267 899999986 888873  23477


Q ss_pred             EEcC-CC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-----C
Q 018705          118 KVTE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----G  188 (351)
Q Consensus       118 ~~~~-~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~  188 (351)
                      .++. ++  ...+......|+++++++||+ +|+++.                  .+.++.||..+++......     .
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCeEEEEEEcCCCCC
Confidence            7775 55  344432225699999999985 777653                  3679999998887654332     1


Q ss_pred             ccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhH
Q 018705          189 FYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREK  266 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~  266 (351)
                      ...+++++++||++.+|+++... .+.+-+...++..... ..+ .+.+++++++|+ +|++...               
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~v~~~~---------------  292 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV-AAP-ESLAVLFNPARNEAYVTHRQ---------------  292 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE-ECS-SCCCEEEETTTTEEEEEETT---------------
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-EcC-CCceEEECCCCCEEEEEECC---------------
Confidence            33577899999999999988664 4443333233322222 122 357799999997 8887642               


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecC
Q 018705          267 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQ  332 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~  332 (351)
                                           .+.|..+|.++++.+..+..+.     .+..+...  +..||++...
T Consensus       293 ---------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          293 ---------------------AGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---------------------TTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             ---------------------CCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                 1368888986788887776432     34555543  4469998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.52  E-value=6.3e-11  Score=110.34  Aligned_cols=233  Identities=14%  Similarity=0.138  Sum_probs=159.1

Q ss_pred             CCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eE
Q 018705           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~  125 (351)
                      ..+.++++++++..+|++. .++.|..||..+++..........+. +++++++|+ ||++....+ +..++. ++  ..
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4578999997777776654 78999999998887755444455788 999999996 777776544 555554 55  33


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+... ..+.+++++++|. +|++...                 .+.|+.||..+++..........+.+++++++++.+
T Consensus       111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          111 TVKTG-KSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV  172 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred             EEeCC-CCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEE
Confidence            33332 5789999999995 7787754                 468999999888776655555678999999999988


Q ss_pred             EEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          205 VVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       205 yv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      |++.... .+.+-+...++..... .....+.+++++++|+ +|++...                               
T Consensus       173 ~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-------------------------------  220 (391)
T 1l0q_A          173 YVANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-------------------------------  220 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEEC-------------------------------
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecC-------------------------------
Confidence            8876544 3333333233322222 1233467788999996 6666531                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~  343 (351)
                         ...+.|..+|.++++.+..+..+.     .+..+...  +..||++....+.+..+++.+
T Consensus       221 ---~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          221 ---KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ---SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ---cCCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence               012468888986678777776432     24555544  457888877788899998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.50  E-value=4.2e-12  Score=116.05  Aligned_cols=180  Identities=14%  Similarity=0.180  Sum_probs=121.5

Q ss_pred             CCCceEEEeeCCCeEEEEEcC-----CEEEEEEcCCCeEEEEee---cCCccccceEEcCCCCEEEEeCC-------CCe
Q 018705           52 NHPEDVSVVVSKGALYTATRD-----GWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNE-------KGL  116 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~-----g~I~~~d~~~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~d~~-------~gl  116 (351)
                      ..|.+++++ .+|.+|++...     ++|+++|.++++.+.+..   ....|. ++++|++|++|+++..       .++
T Consensus        87 ~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           87 ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCEEEEeccccccCCCceE
Confidence            568899999 56778887654     489999997777653322   234678 9999999999999864       468


Q ss_pred             EEEcCC-C-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-C-eEEEe-----e
Q 018705          117 LKVTEE-G-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-K-ETTVL-----H  186 (351)
Q Consensus       117 ~~~~~~-g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~-~~~~~-----~  186 (351)
                      ++++.+ + .+.+......++++++++||+ +|+++..                 .++|++||.++ + ....+     .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----------------~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          165 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC-----------------CCeEEEEEecCCCcCcccccceEEE
Confidence            888864 4 554433335789999999995 9998754                 35788888742 2 23211     1


Q ss_pred             --cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCC--C---CCCceEECCCC-CEEEEEec
Q 018705          187 --EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP--G---GPDNINLAPDG-SFWIGLIK  251 (351)
Q Consensus       187 --~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~--g---~pd~i~~d~~G-~lwva~~~  251 (351)
                        .....|++|+++++|+ +|++.... ++.+-+........+.....  +   .|.+++++++| .||+++..
T Consensus       228 ~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          228 YFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence              1224789999999998 99987543 33333332222233321111  1   57889999886 69998765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.50  E-value=1.1e-12  Score=133.90  Aligned_cols=224  Identities=13%  Similarity=0.167  Sum_probs=144.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCC---eEEEEee-------cCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNE---TLVNWKH-------IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG  123 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g---~~~~~~~-------~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g  123 (351)
                      .+++.| ++|.+|+|+.+ +++++++.++   +++.+..       ...... .|..|++|+||+++. .|+.++++ ++
T Consensus       327 ~~i~~D-~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~-~GL~~~~~~~~  402 (758)
T 3ott_A          327 YSLFRD-SKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIATD-GSINRYDYATR  402 (758)
T ss_dssp             EEEEEC-TTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEET-TEEEEEETTTT
T ss_pred             EEEEEc-CCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEeC-CcHhhcCcCCC
Confidence            467788 78999999964 6999987654   2333321       112345 788999999999994 59999996 55


Q ss_pred             -eEEec--CC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC------CeEE---Ee-
Q 018705          124 -VEAIV--PD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL------KETT---VL-  185 (351)
Q Consensus       124 -~~~l~--~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~------~~~~---~~-  185 (351)
                       .+.+.  ..     ...+.+++.|++|+||++...                  ++|++||+++      +...   .+ 
T Consensus       403 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          403 QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL------------------GGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS------------------SCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC------------------CceEEEccccccccCCcceecccccc
Confidence             55443  11     145678899999999998753                  4688988652      1221   11 


Q ss_pred             -ecCcc--ccceEEEcCCCCEEEE--EecceeEEeecCCCCceeEEec-cCC--CCCCceEECCCCCEEEEEecCCchhh
Q 018705          186 -HEGFY--FANGIALSKNEDFVVV--CESWKRYWLKGDRAGILDAFIE-NLP--GGPDNINLAPDGSFWIGLIKMNQTGV  257 (351)
Q Consensus       186 -~~~~~--~~ngi~~~~dg~~lyv--~~~~~~~~i~~~~~~~~~~~~~-~~~--g~pd~i~~d~~G~lwva~~~~~~~~~  257 (351)
                       ..++.  ....|..+++|+ ||+  +...+.+.++ +..++.+.+.. .+.  ..+..+..|++|+||+++..      
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d-~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~------  536 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKIN-PRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG------  536 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEE-TTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETT------
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCCCCcEEEe-CCCCceEEecCCCcCCCcccceEEECCCCCEEEEecC------
Confidence             11221  245688899987 998  4433333333 22344444321 111  13355788999999999642      


Q ss_pred             hhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEE
Q 018705          258 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIG  337 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~  337 (351)
                                                      ++.+++| +.+.+..+. .++.+...+.++.+++|+||+++  ..+|.
T Consensus       537 --------------------------------Gl~~~~~-~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t--~~Gl~  580 (758)
T 3ott_A          537 --------------------------------GVMRINP-KDESQQSIS-FGSFSNNEILSMTCVKNSIWVST--TNGLW  580 (758)
T ss_dssp             --------------------------------EEEEECC---CCCCBCC-CCC---CCEEEEEEETTEEEEEE--SSCEE
T ss_pred             --------------------------------ceEEEec-CCCceEEec-ccCCCccceEEEEECCCCEEEEC--CCCeE
Confidence                                            6999999 555455553 24555566788888899999999  57899


Q ss_pred             EEeCCCC
Q 018705          338 ILPLDGP  344 (351)
Q Consensus       338 ~~~~~~~  344 (351)
                      +++..+.
T Consensus       581 ~~~~~~~  587 (758)
T 3ott_A          581 IIDRKTM  587 (758)
T ss_dssp             EEETTTC
T ss_pred             EEcCCCc
Confidence            9987643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.49  E-value=3.2e-12  Score=116.37  Aligned_cols=214  Identities=13%  Similarity=0.138  Sum_probs=125.1

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC-e-EEecCCCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-V-EAIVPDAS  132 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~-~~l~~~~~  132 (351)
                      +++.+ .++.+|+++.+  |+++|+ +|+.. .+........ ..+++ +|+||++...+++++++++| . ........
T Consensus        64 ~~~~~-~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~-~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~  137 (330)
T 3hxj_A           64 RPSIG-KDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVS-DFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKA  137 (330)
T ss_dssp             CCEET-TTTEECCSSCE--EEEECC-CGGGGGGSCC-----C-CEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSC
T ss_pred             ceEEe-cCCcEEEecCc--EEEECC-CCcEEEEEECCCCccc-CceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCc
Confidence            44555 46677776554  777765 44321 1111111111 23333 66777777666677777545 2 22222223


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEecce
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ....++++++|++|++..                  .++|++||++ ++... ..........+++++++. +|++. .+
T Consensus       138 ~~~~~~~~~~g~l~vgt~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t-~~  196 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSN------------------DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS-DK  196 (330)
T ss_dssp             CCSCCEECTTSCEEEECT------------------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES-SS
T ss_pred             eeeeeEEcCCCEEEEEcC------------------CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe-CE
Confidence            455667777777777653                  3689999988 55432 222233455677888887 99988 54


Q ss_pred             eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEE
Q 018705          212 RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  291 (351)
Q Consensus       212 ~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  291 (351)
                      .+.++ . .++..............++.|++|++|+++..                                     +++
T Consensus       197 l~~~d-~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-------------------------------------~gl  237 (330)
T 3hxj_A          197 VYAIN-P-DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD-------------------------------------GHL  237 (330)
T ss_dssp             EEEEC-T-TSCEEEEECCSSCCCSCCEECTTSCEEEEETT-------------------------------------TEE
T ss_pred             EEEEC-C-CCcEEEEEccCCcceeceEECCCCeEEEEcCC-------------------------------------CeE
Confidence            44444 2 23322111111123566889999999999653                                     378


Q ss_pred             EEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeC
Q 018705          292 VKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       292 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~  341 (351)
                      .++++ +|+.+..+..+.+.    .+++..+ +|+||+++. .++|.+++.
T Consensus       238 ~~~~~-~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~-~ggl~~~d~  282 (330)
T 3hxj_A          238 YAINP-DGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSY-DGHLYAINP  282 (330)
T ss_dssp             EEECT-TSCEEEEEECSSCC----CSCCEECTTSCEEEECT-TCEEEEECT
T ss_pred             EEECC-CCCEeEEeeCCCCc----cccceEcCCCeEEEecC-CCCEEEECC
Confidence            99999 99988777654322    2333444 789999996 558999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.48  E-value=6.6e-13  Score=134.25  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=148.5

Q ss_pred             CeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCC-CeEEEcCCC------eEEec-CCCCCc
Q 018705           64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG------VEAIV-PDASFT  134 (351)
Q Consensus        64 g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~~g------~~~l~-~~~~~~  134 (351)
                      ..|+++.. +.|.+++..+++...+.....+|. +|++|+ +++||++|... .|++++.++      ...+. .....|
T Consensus       378 ~~ll~~~~-~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P  455 (699)
T 1n7d_A          378 AYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  455 (699)
T ss_dssp             CCBCCCCT-TC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred             eeEEecCc-cceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence            44555444 458899887666665555567899 999996 56899998764 577777432      22222 233679


Q ss_pred             ccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce-
Q 018705          135 NDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK-  211 (351)
Q Consensus       135 n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~-  211 (351)
                      .+|++|+ .|+||+++..                 .++|.+++++++..+.+. ..+..|+||++++++..||+++... 
T Consensus       456 ~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~  518 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP  518 (699)
T ss_dssp             CCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSS
T ss_pred             ceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCC
Confidence            9999995 5789999865                 457999998866655554 4578899999999777799998653 


Q ss_pred             -eEEeecCCCCceeEEeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCce
Q 018705          212 -RYWLKGDRAGILDAFIENLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA  289 (351)
Q Consensus       212 -~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                       ++...+......+.+....-..|.||++|++ ++||++....                                    .
T Consensus       519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~------------------------------------~  562 (699)
T 1n7d_A          519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL------------------------------------H  562 (699)
T ss_dssp             CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT------------------------------------T
T ss_pred             CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC------------------------------------C
Confidence             5554332212223333222246999999965 6899987431                                    3


Q ss_pred             EEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705          290 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       290 ~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      .|.+++. +|.....+....+ ......++..++++||+.....+.|.+++..
T Consensus       563 ~I~~~d~-dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          563 SISSIDV-NGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             EEEEECS-SSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             eEEEEcc-CCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence            5888998 8755444432111 1234555666788999999999999999853

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=7.3e-12  Score=113.61  Aligned_cols=179  Identities=9%  Similarity=0.079  Sum_probs=121.4

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeec-----CCccccceEEcCCCCEEEEeC-------------
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDN-------------  112 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~d~-------------  112 (351)
                      ..|.++++| .+|++|++.. +++|++++.+ |+++.+...     ...|+ .+++|++|++|++|.             
T Consensus        86 ~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           86 AFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCcccccccccc
Confidence            468899999 5677888775 4789999984 777655321     24578 999999999999753             


Q ss_pred             -----CCCeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--
Q 018705          113 -----EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--  182 (351)
Q Consensus       113 -----~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--  182 (351)
                           ..+++++++ +| .+.+. ....||++++++||+ +|++++....            ...++|++|+.+++.+  
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~------------~~~~~i~~~~~~~~~l~~  229 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQG------------HGSVEITAFAWRDGALHD  229 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTEEEE
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcC------------CCCCEEEEEEecCCCccC
Confidence                 246899996 67 66555 557899999999995 9999864110            0124788888654432  


Q ss_pred             -EEeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCC-CEEEEEe
Q 018705          183 -TVLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLI  250 (351)
Q Consensus       183 -~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~  250 (351)
                       +.+.. ....|+||+++++|+ ||++...+.+.++ +.......+.  .+..+.+++++++| .||+++.
T Consensus       230 ~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~gv~~~~-~~g~~~~~~~--~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          230 RRHFASVPDGLPDGFCVDRGGW-LWSSSGTGVCVFD-SDGQLLGHIP--TPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEEECCSSSCCCSEEECTTSC-EEECCSSEEEEEC-TTSCEEEEEE--CSSCCCEEEECTTSCEEEEEET
T ss_pred             CeEEEECCCCCCCeEEECCCCC-EEEecCCcEEEEC-CCCCEEEEEE--CCCceeEEEEeCCCCEEEEEcC
Confidence             12221 235689999999998 9998855422222 2212222222  33357889998777 5999875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.47  E-value=4.4e-12  Score=117.97  Aligned_cols=162  Identities=13%  Similarity=0.184  Sum_probs=109.0

Q ss_pred             CceEecCCCcCCCceEEEeeCCCe-EEEEEcCCEEEEEEcCCCeEE-EEe-------ecCCccccceEEcC----CCCEE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGA-LYTATRDGWVKYFILHNETLV-NWK-------HIDSQSLLGLTTTK----DGGVI  108 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~-lyv~~~~g~I~~~d~~~g~~~-~~~-------~~~~~p~~gl~~d~----~G~L~  108 (351)
                      .+++++.+ +..|.+|+++| +|. +||+...|+|++++. +++.. .+.       .....++ +|++++    +|.||
T Consensus         9 ~~~~va~~-l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lY   84 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLP-DNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIW   84 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECS-TTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEE
T ss_pred             EEEEEECC-CCCcEEEEEcC-CCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEE
Confidence            34666665 78999999995 667 999999999999997 55542 121       1123567 999998    58999


Q ss_pred             EEeCC--------CCeEEEcC--C-C----eEEecCC-------CCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705          109 LCDNE--------KGLLKVTE--E-G----VEAIVPD-------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus       109 v~d~~--------~gl~~~~~--~-g----~~~l~~~-------~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      ++...        ..++++..  + +    .+++...       ...+++|++++||.||++......  .....+  ..
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~--~~  160 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQD--LD  160 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGC--TT
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCC--CC
Confidence            98643        24666652  2 2    2222111       145889999999999999854211  000000  01


Q ss_pred             cCCceEEEEeCCCC-------------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          167 KPYGQLRKYDPKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       167 ~~~g~l~~~d~~~~-------------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ...|+|+|+++++.             ..+.+..++..|.|++++++...||+++.+.
T Consensus       161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence            23578999998753             3456677888999999999444599999763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=4.7e-12  Score=120.92  Aligned_cols=180  Identities=9%  Similarity=0.112  Sum_probs=120.3

Q ss_pred             CcCCCceEEEeeCCCeEEEEEcC-----CEEEEEEcCCCeEE---EEeecCCccccceEEcC-CCCEEEEeCCC-CeEEE
Q 018705           50 CVNHPEDVSVVVSKGALYTATRD-----GWVKYFILHNETLV---NWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKV  119 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~~-----g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~  119 (351)
                      ....|.+|++|++++.+|++...     ..++.++. ++.+.   .+ .....|. ++++|+ +|+||+++... .++++
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l-~~~~~p~-giavdp~~g~lyv~d~~~~~V~~~  253 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITEL-TKGQNCN-GAETHPINGELYFNSWNAGQVFRY  253 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEE-EECSSCC-CEEECTTTCCEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeee-ccCCCce-EEEEeCCCCEEEEEECCCCEEEEE
Confidence            36789999999766669987752     25777776 44332   22 2346799 999999 89999999765 57778


Q ss_pred             cCCC--eEEec-CC-CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCC--CCeE---EEeec--
Q 018705          120 TEEG--VEAIV-PD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET---TVLHE--  187 (351)
Q Consensus       120 ~~~g--~~~l~-~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~~~~--  187 (351)
                      +.++  ...+. .. ...|++|+++++|+ +|+++..                 .++|++++.+  ++++   ..+..  
T Consensus       254 ~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag~~  316 (430)
T 3tc9_A          254 DFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-----------------QHYILRSDYDWKTKRLTTPYIVCGQQ  316 (430)
T ss_dssp             ETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEECCCEEEEECT
T ss_pred             ECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-----------------CCEEEEEeCCcccccccceEEEeccC
Confidence            7754  42332 22 25799999999997 9999975                 3577776543  2332   12221  


Q ss_pred             -------------Cccccc-eEEEc--------CCCCEEEEEecce-eEEeecCCCCceeEEecc----C----C-----
Q 018705          188 -------------GFYFAN-GIALS--------KNEDFVVVCESWK-RYWLKGDRAGILDAFIEN----L----P-----  231 (351)
Q Consensus       188 -------------~~~~~n-gi~~~--------~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~----~----~-----  231 (351)
                                   .+..|+ |++++        ++| .|||++..+ ++..-++ .|....++..    .    .     
T Consensus       317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~  394 (430)
T 3tc9_A          317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQ  394 (430)
T ss_dssp             TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTT
T ss_pred             CCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchh
Confidence                         255788 88885        445 499999887 6655432 3454444321    0    1     


Q ss_pred             ----CCCCceEECC-CCCEEEEEec
Q 018705          232 ----GGPDNINLAP-DGSFWIGLIK  251 (351)
Q Consensus       232 ----g~pd~i~~d~-~G~lwva~~~  251 (351)
                          ..|.++++|+ +|+|||+...
T Consensus       395 ~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          395 EARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             TCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             hcEeCCCcEEEEECCCCEEEEEECC
Confidence                1588999998 6899999754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.44  E-value=1.6e-11  Score=117.28  Aligned_cols=198  Identities=12%  Similarity=0.062  Sum_probs=130.9

Q ss_pred             CccccceEEcCC---CCEEEEeCCCCeEEEcC-CC-eEEecCCCCCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705           93 SQSLLGLTTTKD---GGVILCDNEKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        93 ~~p~~gl~~d~~---G~L~v~d~~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      ..|. ++++|++   |+||++|....++++++ ++ ++.+......|++|+++++|+||+++....             .
T Consensus       139 ~~P~-gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~-------------~  204 (433)
T 4hw6_A          139 DNIW-RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSS-------------D  204 (433)
T ss_dssp             SCCC-EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSC-------------T
T ss_pred             CCCc-eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCC-------------c
Confidence            3689 9999974   89999998777889986 77 777766667899999999999999997421             0


Q ss_pred             CCceEEEEeCCCCeE-EEeecCccccceEEEcC-CCCEEEEEecce-eEEeecCCCCce--eEEeccCCCCCCceEECCC
Q 018705          168 PYGQLRKYDPKLKET-TVLHEGFYFANGIALSK-NEDFVVVCESWK-RYWLKGDRAGIL--DAFIENLPGGPDNINLAPD  242 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~-dg~~lyv~~~~~-~~~i~~~~~~~~--~~~~~~~~g~pd~i~~d~~  242 (351)
                      ....++.+++..+.. ......+..|+|+++++ +|. |||++..+ +++.-+...+..  .++.......+.++++|++
T Consensus       205 ~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          205 TNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             TSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred             ccceEEEEECCCCeeccccccccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence            012466666543321 11223578899999999 665 99999876 555544433443  2232222234557999999


Q ss_pred             CC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC---CeE--EEEEECC---CC---
Q 018705          243 GS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND---GKI--IRDFNDP---DA---  310 (351)
Q Consensus       243 G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---g~~--~~~~~~~---~g---  310 (351)
                      |+ ||++....                                    ..|.+++. +   ++.  ...+...   .|   
T Consensus       284 G~~LYvad~~~------------------------------------~~I~~~~~-d~~~~~~~~~~~~ag~~g~~g~~d  326 (433)
T 4hw6_A          284 GDWAYIIYNGK------------------------------------HCIYRVDY-NRETGKLAVPYIVCGQHSSPGWVD  326 (433)
T ss_dssp             SSEEEEEETTT------------------------------------TEEEEEEB-CTTTCCBCCCEEEEECTTCCCCBC
T ss_pred             CCEEEEEeCCC------------------------------------CEEEEEeC-CCCCcccCcEEEEEecCCCCccCC
Confidence            98 99997531                                    25777665 3   221  1122211   11   


Q ss_pred             -----CcccceeEEEE----------ECCEEEEEecCCCeEEEEeCC
Q 018705          311 -----TYISFVTSAAE----------FDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       311 -----~~~~~~~~~~~----------~~g~L~ig~~~~~~i~~~~~~  342 (351)
                           ..+..+..++.          .+|.||++...+.+|.+++..
T Consensus       327 g~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          327 GMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             EEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             CcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence                 11334566665          458999999999999999854

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=4.1e-11  Score=115.23  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=121.7

Q ss_pred             cCCCceEEE-------eeCCCeEEEEEcCC-------EEEEEEcCC-CeEE------EEeecCCccccceEEcC-CCCEE
Q 018705           51 VNHPEDVSV-------VVSKGALYTATRDG-------WVKYFILHN-ETLV------NWKHIDSQSLLGLTTTK-DGGVI  108 (351)
Q Consensus        51 ~~~pe~i~~-------d~~~g~lyv~~~~g-------~I~~~d~~~-g~~~------~~~~~~~~p~~gl~~d~-~G~L~  108 (351)
                      +..|.+|++       +++++.+|++...+       .|+.++... |++.      .+. ....|+ ++++++ +|.||
T Consensus       185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~-giavdp~~g~LY  262 (496)
T 3kya_A          185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCN-GATIHPINGELY  262 (496)
T ss_dssp             CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCC-CEEECTTTCCEE
T ss_pred             cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCce-EEEEcCCCCeEE
Confidence            557999999       96666799987654       388887543 3442      222 345789 999998 67999


Q ss_pred             EEeCCCC-eEEEcCC--------C-e-------------EEecCC-CCCcccEEEccCCc-EEEEeCCCccCCccccccc
Q 018705          109 LCDNEKG-LLKVTEE--------G-V-------------EAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDM  163 (351)
Q Consensus       109 v~d~~~g-l~~~~~~--------g-~-------------~~l~~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  163 (351)
                      +++...+ +++++.+        + .             +.+... ...|.+|+++++|+ +||+|+.            
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~------------  330 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN------------  330 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT------------
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC------------
Confidence            9998876 8888843        4 4             222222 25689999999997 8999976            


Q ss_pred             ccccCCceEEEEe--CCCCeE---EEeec---------------Cccccc-eEEEc-------CCCCEEEEEecce-eEE
Q 018705          164 AEGKPYGQLRKYD--PKLKET---TVLHE---------------GFYFAN-GIALS-------KNEDFVVVCESWK-RYW  214 (351)
Q Consensus       164 ~~~~~~g~l~~~d--~~~~~~---~~~~~---------------~~~~~n-gi~~~-------~dg~~lyv~~~~~-~~~  214 (351)
                           ..+|++++  ..++.+   +.++.               .+..|. |++++       ++|+ |||+++.+ |++
T Consensus       331 -----~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr  404 (496)
T 3kya_A          331 -----NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVR  404 (496)
T ss_dssp             -----TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEE
T ss_pred             -----CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEE
Confidence                 35788854  444433   22221               245788 78887       5565 99999988 766


Q ss_pred             eecCCCCceeEEecc-C----------------------CCCCCceEECCC-CCEEEEEec
Q 018705          215 LKGDRAGILDAFIEN-L----------------------PGGPDNINLAPD-GSFWIGLIK  251 (351)
Q Consensus       215 i~~~~~~~~~~~~~~-~----------------------~g~pd~i~~d~~-G~lwva~~~  251 (351)
                      .-++ .|....++.. .                      -..|.++++|++ |+|||+...
T Consensus       405 ~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          405 KVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             EECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence            5542 3454444321 0                      013677899996 999999754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=1.8e-11  Score=113.12  Aligned_cols=182  Identities=12%  Similarity=0.106  Sum_probs=122.0

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEc------CCEEEEEEcCCCeE-EEEeec------CCccccceEEcC-CCCEEEEeC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATR------DGWVKYFILHNETL-VNWKHI------DSQSLLGLTTTK-DGGVILCDN--  112 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~------~g~I~~~d~~~g~~-~~~~~~------~~~p~~gl~~d~-~G~L~v~d~--  112 (351)
                      +.+..|.++++| .+++||+...      .++|+++|++++++ +.+...      ...++ ++++|+ +|.+|+++.  
T Consensus        64 ~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCcc
Confidence            346789999999 4678887653      47899999988884 444321      13568 999996 578999986  


Q ss_pred             -C-CCeEEEcC-CC-e-EEecC--C---------------------------CCCcccEEEccCC-cEEEEeCCCccCCc
Q 018705          113 -E-KGLLKVTE-EG-V-EAIVP--D---------------------------ASFTNDVIAASDG-TLYFTVASTKYTPT  157 (351)
Q Consensus       113 -~-~gl~~~~~-~g-~-~~l~~--~---------------------------~~~~n~l~~d~dG-~ly~t~~~~~~~~~  157 (351)
                       . .+++.++. +| . +.+..  .                           ...+|+|++++|| .+|+++..      
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~------  215 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH------  215 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS------
T ss_pred             CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC------
Confidence             3 46777774 45 3 33311  0                           0247999999999 59998865      


Q ss_pred             ccccccccccCCceEEEEeCC---CCe---------EEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCcee
Q 018705          158 DFYKDMAEGKPYGQLRKYDPK---LKE---------TTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILD  224 (351)
Q Consensus       158 ~~~~~~~~~~~~g~l~~~d~~---~~~---------~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~  224 (351)
                                 ..+|++++.+   .+.         +... .....|+||+++++|+ +|+++..+ ++..-+...++..
T Consensus       216 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          216 -----------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             -----------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEEE
T ss_pred             -----------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCEE
Confidence                       2378888632   110         1111 1234799999999997 99999876 4443333234544


Q ss_pred             EEecc-CCCCCCceEECCCCCEEEEEec
Q 018705          225 AFIEN-LPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       225 ~~~~~-~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .+... .-..|++++++++|+||++...
T Consensus       283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             EEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             EEEECCceecCCeeEECCCCcEEEEeCc
Confidence            44322 1246899999999999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.39  E-value=2e-10  Score=104.40  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=146.0

Q ss_pred             EEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC-CCeEEEcC-CC-e-EEecCCC
Q 018705           58 SVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG-V-EAIVPDA  131 (351)
Q Consensus        58 ~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~-~gl~~~~~-~g-~-~~l~~~~  131 (351)
                      .++..++.+|+.. .++.|..+|..+++..........+. +++++++|+ ||++... ..++.++. ++ . .......
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            3444567777755 57899999998888755444445556 899999997 8888874 45666664 55 4 3322222


Q ss_pred             CCccc-EEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705          132 SFTND-VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~-l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      ..|.. +++++||+..++....              ...+.|..||.++++..........|++++++|||+.+|+++..
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGL--------------NHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCS--------------SSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET
T ss_pred             CCCccceEECCCCCEEEEecCC--------------CCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC
Confidence            56777 9999999744443220              01127999999888776555555678999999999989998765


Q ss_pred             e-e-EEeec-CCCCce----eEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          211 K-R-YWLKG-DRAGIL----DAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       211 ~-~-~~i~~-~~~~~~----~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      . . +++-+ ...+..    .... .....|.+++++++|+ +|++...                               
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~-------------------------------  196 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI-------------------------------  196 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT-------------------------------
T ss_pred             CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC-------------------------------
Confidence            3 3 33211 011111    1111 1223478899999997 8887643                               


Q ss_pred             CCCCCceEEEEEECCCCeE---EEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          283 MGSDAGARVVKVDGNDGKI---IRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~---~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                           .+.|..+|.++++.   +..+....     .+..+...  +..||+++...+.|.++++.+-
T Consensus       197 -----~~~v~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          197 -----GNSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             -----TTEEEEEECSSTTSCEEEEEEECSS-----CCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             -----CCeEEEEECCCCcccceeeeccCCC-----CCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence                 13577788756666   66665321     23344443  4458888877778888887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=2.7e-11  Score=111.16  Aligned_cols=175  Identities=15%  Similarity=0.121  Sum_probs=120.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-----CCccccceEEcCCCCEEEEeCC-------CCeEEEc
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNE-------KGLLKVT  120 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~d~~-------~gl~~~~  120 (351)
                      .+.+++++ .+|.+|+++.+ +|+++|.++++++.+...     ...++ .+++|++|++|+++..       .++++++
T Consensus        91 ~v~~i~~~-~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           91 MGSALAKI-SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             CEEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             cceEEEEe-CCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            57789999 46889988754 599999988887765432     13577 8999999999998752       4788888


Q ss_pred             CCC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--CC-eE---EEee---cCc
Q 018705          121 EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LK-ET---TVLH---EGF  189 (351)
Q Consensus       121 ~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~-~~---~~~~---~~~  189 (351)
                       +| .+.+......++++++++|| .+|+++..                 .++|++|+.+  +| ++   +.+.   ...
T Consensus       168 -~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~  229 (326)
T 2ghs_A          168 -KGKVTKLFADISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK  229 (326)
T ss_dssp             -TTEEEEEEEEESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS
T ss_pred             -CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEECCCCC
Confidence             77 55554433678999999999 58998864                 3579999864  55 31   2221   123


Q ss_pred             cccceEEEcCCCCEEEEEecce-eEEeecCCCCc-eeEEeccCCC-CCCceEEC-CCC-CEEEEEecC
Q 018705          190 YFANGIALSKNEDFVVVCESWK-RYWLKGDRAGI-LDAFIENLPG-GPDNINLA-PDG-SFWIGLIKM  252 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~-~~~~~~~~~g-~pd~i~~d-~~G-~lwva~~~~  252 (351)
                      ..|+|++++++|+ +|++.... ++..-+.. ++ ...+.  .+. .+.+++++ +++ .||+++...
T Consensus       230 ~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~-g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          230 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GNHIARYE--VPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             SEEEEEEECTTSC-EEEEEETTTEEEEECTT-CCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCCeeEECCCCC-EEEEEeCCCEEEEECCC-CCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecCC
Confidence            5689999999997 99987543 33332332 33 22222  222 35678887 665 599997653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.39  E-value=1.6e-10  Score=106.09  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=114.8

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcC-CCeEEEEe---ecC---------CccccceEEcCCCCEEEEeCCCC-
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILH-NETLVNWK---HID---------SQSLLGLTTTKDGGVILCDNEKG-  115 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~-~g~~~~~~---~~~---------~~p~~gl~~d~~G~L~v~d~~~g-  115 (351)
                      ...|.+++++|++..+|++. .++.|..|+.. +|+.+...   ...         ..+. +++++++|++|+++...+ 
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            45799999998777899887 57888888873 45443322   111         2366 799999999999987665 


Q ss_pred             eEEEc--CCC-eEEec---CC-CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCce--EEEEeCCCCeEEEe
Q 018705          116 LLKVT--EEG-VEAIV---PD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPKLKETTVL  185 (351)
Q Consensus       116 l~~~~--~~g-~~~l~---~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~  185 (351)
                      +..++  .+| .....   .. ...|++++++|||+ +|+++..                 .+.  ++.++..+++.+.+
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCceEEe
Confidence            43444  256 44321   11 15788999999997 8887754                 234  44555545665433


Q ss_pred             ec--C-------ccccceEEEcCCCCEEEEEecce---e-EEeecCCCCceeEEec--cCCCCCCceEECCCCC-EEEEE
Q 018705          186 HE--G-------FYFANGIALSKNEDFVVVCESWK---R-YWLKGDRAGILDAFIE--NLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       186 ~~--~-------~~~~ngi~~~~dg~~lyv~~~~~---~-~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      ..  .       ...+.+++++|||++||++....   . +.+..  .+..+....  .....|.+++++++|+ ||++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA--DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG--GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC--CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            21  1       13477899999999999987643   2 33331  122222211  1123588999999997 77765


Q ss_pred             e
Q 018705          250 I  250 (351)
Q Consensus       250 ~  250 (351)
                      .
T Consensus       305 ~  305 (347)
T 3hfq_A          305 Q  305 (347)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=5.7e-10  Score=99.96  Aligned_cols=212  Identities=15%  Similarity=0.140  Sum_probs=142.3

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecC--CccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEecCCC-CCcccE
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDA-SFTNDV  137 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~~~~-~~~n~l  137 (351)
                      ++.++++..+++|+.+|.++|+...-....  ..++ .++++++|+++++ ..++++.++++|  +-.+.... ..++++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCTTCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCCCcccccc
Confidence            556777788999999999889874222222  3577 8999999999995 466799999877  44444321 356678


Q ss_pred             EEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--c----CccccceEEEcCCCCEEEEEecce
Q 018705          138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--E----GFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       138 ~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~----~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .+.+||++++++...                .++++.+|++++.+..+.  .    ....+.+++.+++|+ ++++....
T Consensus        83 ~~~~dG~~lv~~~~~----------------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~  145 (276)
T 3no2_A           83 RILPDGNALVAWCGH----------------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFAT  145 (276)
T ss_dssp             EECTTSCEEEEEEST----------------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTT
T ss_pred             EECCCCCEEEEecCC----------------CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCC
Confidence            889999999987531                357888888644333332  1    123567889999999 55666544


Q ss_pred             -eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceE
Q 018705          212 -RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR  290 (351)
Q Consensus       212 -~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
                       ++..-+.. |+..--. ..++.|.+..+.++|+++++...                                    .+.
T Consensus       146 ~~v~~~d~~-G~~~w~~-~~~~~~~~~~~~~~g~~~v~~~~------------------------------------~~~  187 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSV-KLSGTPFSSAFLDNGDCLVACGD------------------------------------AHC  187 (276)
T ss_dssp             TEEEEECTT-SCEEEEE-ECSSCCCEEEECTTSCEEEECBT------------------------------------TSE
T ss_pred             CEEEEECCC-CCEEEEE-ECCCCccceeEcCCCCEEEEeCC------------------------------------CCe
Confidence             44443343 4432211 23346788889999999998643                                    136


Q ss_pred             EEEEECCCCeEEEEEECC--CCCcccceeEEEE-ECCEEEEEec
Q 018705          291 VVKVDGNDGKIIRDFNDP--DATYISFVTSAAE-FDGNLYLASL  331 (351)
Q Consensus       291 v~~~~~~~g~~~~~~~~~--~g~~~~~~~~~~~-~~g~L~ig~~  331 (351)
                      |+.+|+++|+++-.+...  .+.....++++.. .+|.+|++++
T Consensus       188 v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          188 FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999999449999888743  2222444666654 4789999996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.38  E-value=4.1e-10  Score=104.56  Aligned_cols=242  Identities=11%  Similarity=0.090  Sum_probs=141.2

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcC-CCeEEEEee--cCCccccceEEcCCCC-EEE--Ee-------C-----
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILH-NETLVNWKH--IDSQSLLGLTTTKDGG-VIL--CD-------N-----  112 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~-~g~~~~~~~--~~~~p~~gl~~d~~G~-L~v--~d-------~-----  112 (351)
                      ...|..++++|++..+|++..+ .|..|+.. +|+......  ..+.|. .++++++|+ ||+  ++       .     
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            4579999999877789998877 78888875 676643322  224588 899999997 343  32       0     


Q ss_pred             CCC---eEEEcCCC-e-EEec----CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCC-CCe
Q 018705          113 EKG---LLKVTEEG-V-EAIV----PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKE  181 (351)
Q Consensus       113 ~~g---l~~~~~~g-~-~~l~----~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~  181 (351)
                      ..+   ++.++.+| . ..+.    .....+.+++++|||+ +|+++..                 .+.|+.|+.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            233   33333355 3 2222    1225789999999995 7777753                 3578888776 676


Q ss_pred             EEEee--c---CccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCceeE---EeccCC----C---------CCCce
Q 018705          182 TTVLH--E---GFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGILDA---FIENLP----G---------GPDNI  237 (351)
Q Consensus       182 ~~~~~--~---~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~~~~---~~~~~~----g---------~pd~i  237 (351)
                      .+.+.  .   ....|.+++++|||+++|++... +  .++.-+...++...   ....++    +         .+.++
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  259 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence            54321  1   14568999999999999997753 3  33322222233211   011121    1         25678


Q ss_pred             E-ECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEE---EECCCCCc
Q 018705          238 N-LAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD---FNDPDATY  312 (351)
Q Consensus       238 ~-~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~---~~~~~g~~  312 (351)
                      + ++++|+ ||++.......                 .            ...-.++.+++ +|+....   ...+... 
T Consensus       260 ~~~spdG~~l~v~~~~~~~~-----------------~------------~~~i~v~~~~~-~g~~~~~~~~~~~~~~~-  308 (365)
T 1jof_A          260 CALTFSGKYMFASSRANKFE-----------------L------------QGYIAGFKLRD-CGSIEKQLFLSPTPTSG-  308 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTT-----------------S------------CCEEEEEEECT-TSCEEEEEEEEECSSCC-
T ss_pred             EEECCCCCEEEEECCCCCCC-----------------C------------CCeEEEEEECC-CCCEEEeeeeeecCCCC-
Confidence            8 999997 77765431100                 0            00113455555 7775432   3222111 


Q ss_pred             ccceeEEEE---ECCEEEEEecCCCeEEEEeCCC
Q 018705          313 ISFVTSAAE---FDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       313 ~~~~~~~~~---~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      .. --++..   ++..||+++..++.|..+++..
T Consensus       309 ~~-~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          309 GH-SNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TT-CCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             cc-cceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            11 112334   4678998887667787776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.35  E-value=7.3e-11  Score=107.19  Aligned_cols=189  Identities=16%  Similarity=0.159  Sum_probs=122.1

Q ss_pred             CccccceEEcCCCCEEEEeCC-CCeEEEcCCC-eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCc
Q 018705           93 SQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (351)
Q Consensus        93 ~~p~~gl~~d~~G~L~v~d~~-~gl~~~~~~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g  170 (351)
                      ..|. ++++|++|+||+++.. +.++++++++ ..........|++++++++|++|+++...               ...
T Consensus        32 ~~pe-gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~---------------~~~   95 (306)
T 2p4o_A           32 TFLE-NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA---------------DSI   95 (306)
T ss_dssp             CCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT---------------TSC
T ss_pred             CCcc-eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccC---------------Ccc
Confidence            5688 9999999999999954 5688888766 43332222679999999999999998531               013


Q ss_pred             eEEEEeCCCCeEEEeec--CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEE--e---------ccCCCCCCc
Q 018705          171 QLRKYDPKLKETTVLHE--GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAF--I---------ENLPGGPDN  236 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~--~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~--~---------~~~~g~pd~  236 (351)
                      +|+++++.+++++.+..  ...+++|++..+++ .+|+++... +++..+...++.+++  .         ..+ ..|++
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~-~~png  173 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF-PAANG  173 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS-CSEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC-CcCCC
Confidence            69999987888766543  35678999987765 589998644 555443322222221  0         011 24677


Q ss_pred             eEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC--CeE--EEEEECCCCC
Q 018705          237 INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND--GKI--IRDFNDPDAT  311 (351)
Q Consensus       237 i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--g~~--~~~~~~~~g~  311 (351)
                      +  +++| +||++....                                    ..|.+|+. +  |+.  .+.+..  . 
T Consensus       174 i--s~dg~~lyv~d~~~------------------------------------~~I~~~~~-~~~g~~~~~~~~~~--~-  211 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEK------------------------------------MLLLRIPV-DSTDKPGEPEIFVE--Q-  211 (306)
T ss_dssp             E--EEETTEEEEEETTT------------------------------------TEEEEEEB-CTTSCBCCCEEEEE--S-
T ss_pred             c--CcCCCEEEEEeCCC------------------------------------CEEEEEEe-CCCCCCCccEEEec--c-
Confidence            7  4555 699987531                                    25777776 4  331  112211  0 


Q ss_pred             cccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          312 YISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       312 ~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                        .....++.+ +|+||++...+++|.+++..+
T Consensus       212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             --CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             --CCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence              112334443 678999999889999998654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.33  E-value=1.5e-10  Score=107.67  Aligned_cols=184  Identities=11%  Similarity=0.041  Sum_probs=116.1

Q ss_pred             cCCCceEEEeeC---CCeEEEEEcC--------CEEEEEEcCCC--e---EEEE-e--e--cCCccccceEEcCCCCEEE
Q 018705           51 VNHPEDVSVVVS---KGALYTATRD--------GWVKYFILHNE--T---LVNW-K--H--IDSQSLLGLTTTKDGGVIL  109 (351)
Q Consensus        51 ~~~pe~i~~d~~---~g~lyv~~~~--------g~I~~~d~~~g--~---~~~~-~--~--~~~~p~~gl~~d~~G~L~v  109 (351)
                      ..+|.+|+++|+   ++.||+....        ++|+|++..++  +   .+.+ .  .  ....+. +|+++++|.||+
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~-~l~~~pDG~Lyv  150 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG-RIRFGPDGMLYI  150 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC-CEEECTTSCEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc-eEEECCCCcEEE
Confidence            467999999976   6899997653        78999997554  1   2222 1  1  123467 899999999999


Q ss_pred             EeCC--------------CCeEEEcCCC-e---------EEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccc
Q 018705          110 CDNE--------------KGLLKVTEEG-V---------EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMA  164 (351)
Q Consensus       110 ~d~~--------------~gl~~~~~~g-~---------~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~  164 (351)
                      +...              ..+++++++| +         ++++.....|+++++|+ +|+||+++.....          
T Consensus       151 t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~----------  220 (354)
T 3a9g_A          151 TTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG----------  220 (354)
T ss_dssp             ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS----------
T ss_pred             EECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC----------
Confidence            8642              2588888766 3         44555557899999999 7999999975221          


Q ss_pred             cccCCceEEEEeCCC--------------CeE---EEeecCccccceEEE-------cCCCCEEEEEecce-eEEe---e
Q 018705          165 EGKPYGQLRKYDPKL--------------KET---TVLHEGFYFANGIAL-------SKNEDFVVVCESWK-RYWL---K  216 (351)
Q Consensus       165 ~~~~~g~l~~~d~~~--------------~~~---~~~~~~~~~~ngi~~-------~~dg~~lyv~~~~~-~~~i---~  216 (351)
                          ...|.++.+..              +..   ..+......|.|+++       ..+| .+|+++... +++.   .
T Consensus       221 ----~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          221 ----HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             ----CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEEC
T ss_pred             ----CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEEC
Confidence                01122222110              000   011012346889999       3566 499998766 4443   3


Q ss_pred             cC-CCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          217 GD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       217 ~~-~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +. .....+.+.....+.|.++++++||.||+++.
T Consensus       296 ~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          296 DNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             GGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            21 11112333323345688999999999999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=2.3e-10  Score=101.49  Aligned_cols=194  Identities=11%  Similarity=0.109  Sum_probs=130.5

Q ss_pred             ccccceEEcCCCCEEEEeC---CCCeEEEcC-CC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705           94 QSLLGLTTTKDGGVILCDN---EKGLLKVTE-EG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus        94 ~p~~gl~~d~~G~L~v~d~---~~gl~~~~~-~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      .|. ||+++++|+||+++.   .+.+..++. +|  ...+... ..++.+++++ ++++|+++..               
T Consensus        22 f~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~---------------   84 (266)
T 2iwa_A           22 FTQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWL---------------   84 (266)
T ss_dssp             CEE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETT---------------
T ss_pred             Ccc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEec---------------
Confidence            478 999999899999975   246888884 66  4443322 2456677776 3489999865               


Q ss_pred             cCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCce-e-EEecc--CC-CCCCceEECC
Q 018705          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGIL-D-AFIEN--LP-GGPDNINLAP  241 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~-~-~~~~~--~~-g~pd~i~~d~  241 (351)
                        .+.+++||+++.++..-.... .|.|+.+++||+.+|+++..+++++-+....+. . +....  .+ ..++++.+. 
T Consensus        85 --~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           85 --KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             --CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             --CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence              568999999887654333222 467788888999999998545555444332222 1 11111  11 135677776 


Q ss_pred             CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCC--------C-Cc
Q 018705          242 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD--------A-TY  312 (351)
Q Consensus       242 ~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--------g-~~  312 (351)
                      +|.+|++....                                    ..|.++|+++|+++..+.-+.        + ..
T Consensus       161 dg~lyvn~~~~------------------------------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~  204 (266)
T 2iwa_A          161 NGEVWANIWQT------------------------------------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRD  204 (266)
T ss_dssp             TTEEEEEETTS------------------------------------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred             CCEEEEecCCC------------------------------------CeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence            78999886431                                    369999999999999886421        0 01


Q ss_pred             ccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          313 ISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       313 ~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      .....++..+  +++||++....+.+..+++...
T Consensus       205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            1345677665  4689999999999999997655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.30  E-value=6.4e-09  Score=96.64  Aligned_cols=219  Identities=13%  Similarity=0.180  Sum_probs=143.5

Q ss_pred             eEEE-EEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEE-cC-CC--eEEecCCCCCcccEE
Q 018705           65 ALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKV-TE-EG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        65 ~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~-~~-~g--~~~l~~~~~~~n~l~  138 (351)
                      .+|+ +..++.|..||..+++..........+. +++++++|+ ||++....+.+++ +. ++  ...+... ..+++++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence            4444 5568999999998887755444455688 999999996 5677644454444 43 55  3434333 4789999


Q ss_pred             EccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEee
Q 018705          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLK  216 (351)
Q Consensus       139 ~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~  216 (351)
                      ++++|. +|++...                 .+.|+.||..+++..........+.+++++++++.+|++.... .+.+-
T Consensus        81 ~spdg~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           81 VSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             ECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            999995 7777643                 4689999999888766555556788999999999888876544 33332


Q ss_pred             cCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE
Q 018705          217 GDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD  295 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  295 (351)
                      +...++...... ....+..++++++|+ +|++...                                    .+.|..+|
T Consensus       144 d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~------------------------------------~~~v~~~d  186 (391)
T 1l0q_A          144 NTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFD------------------------------------SMSISVID  186 (391)
T ss_dssp             ETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETT------------------------------------TTEEEEEE
T ss_pred             ECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeCC------------------------------------CCEEEEEE
Confidence            322333222221 223467789999996 6666432                                    13577788


Q ss_pred             CCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEec--CCCeEEEEeCCCC
Q 018705          296 GNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASL--QSNFIGILPLDGP  344 (351)
Q Consensus       296 ~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~--~~~~i~~~~~~~~  344 (351)
                      ..+++....+....     .+..+...  +..||+++.  ..+.|..+++.+.
T Consensus       187 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          187 TVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             TTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCCCeEEEEEecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            75666666664321     34455543  456888875  4678888887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.30  E-value=3.9e-10  Score=104.68  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=100.4

Q ss_pred             eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC-eEEec------CCCCCcccEEEccC----CcEEEEeCCC
Q 018705           84 TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VEAIV------PDASFTNDVIAASD----GTLYFTVAST  152 (351)
Q Consensus        84 ~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g-~~~l~------~~~~~~n~l~~d~d----G~ly~t~~~~  152 (351)
                      +++.+......|. +|+++++|+|||++..+.+++++ +| .+.+.      .....|++|++++|    |.||+++...
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            4455554456799 99999999999999887787777 56 44332      12368999999998    7899998631


Q ss_pred             ccCCcccccccccccCCceEEEEeCCCCe---EEEeec-------CccccceEEEcCCCCEEEEEecc------------
Q 018705          153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHE-------GFYFANGIALSKNEDFVVVCESW------------  210 (351)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~-------~~~~~ngi~~~~dg~~lyv~~~~------------  210 (351)
                      .-            ...++|++|+.+.++   .+.+..       ....+++|++++||. ||++...            
T Consensus       100 ~~------------~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A          100 EG------------GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             TT------------SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred             CC------------CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence            00            012578888876442   222221       234688999999996 9998631            


Q ss_pred             --ee-EEeecCC-C-----------CceeEEeccCCCCCCceEECC-CCCEEEEEecC
Q 018705          211 --KR-YWLKGDR-A-----------GILDAFIENLPGGPDNINLAP-DGSFWIGLIKM  252 (351)
Q Consensus       211 --~~-~~i~~~~-~-----------~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~  252 (351)
                        ++ +.+.... .           ...+++...+. .|.++++|+ +|+||++....
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCC
Confidence              12 3332110 0           13345544332 488999999 79999998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=2.2e-09  Score=97.10  Aligned_cols=225  Identities=11%  Similarity=-0.002  Sum_probs=144.8

Q ss_pred             CCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCC------ccccceEEcCCC-CEEEEe------------C
Q 018705           53 HPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDS------QSLLGLTTTKDG-GVILCD------------N  112 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~------~p~~gl~~d~~G-~L~v~d------------~  112 (351)
                      .|.+++++|+++.+|+... ++.|..+|..+++.........      .|. +++++++| .||+++            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            4899999977778887654 6899999988887643222222      688 99999999 578875            2


Q ss_pred             CCCeEEEcC-CC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC
Q 018705          113 EKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (351)
Q Consensus       113 ~~gl~~~~~-~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  188 (351)
                      ...+..++. ++  ...+... ..+.++++++||+ +|+++                    +.|+.||.++++.......
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEEEECS
T ss_pred             CceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEeeeeec
Confidence            356777774 55  3333332 5789999999996 88772                    3699999888876544433


Q ss_pred             ccccceEEEcCCCCEEEEEecce-e-----------------------EEeecCCCCceeEE-eccCCCCCCceEECCCC
Q 018705          189 FYFANGIALSKNEDFVVVCESWK-R-----------------------YWLKGDRAGILDAF-IENLPGGPDNINLAPDG  243 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~-~-----------------------~~i~~~~~~~~~~~-~~~~~g~pd~i~~d~~G  243 (351)
                      ...+..++++||++.+|++.... .                       +++-+...++.... .......+.+++++++|
T Consensus       173 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg  252 (337)
T 1pby_B          173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK  252 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC
Confidence            33234557889988777765432 1                       12222222222211 11122345678999999


Q ss_pred             C-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE
Q 018705          244 S-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF  322 (351)
Q Consensus       244 ~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~  322 (351)
                      + +|++  .                                     +.|..+|.++++.+..+..+.     .+.++...
T Consensus       253 ~~l~~~--~-------------------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s  288 (337)
T 1pby_B          253 TRAFGA--Y-------------------------------------NVLESFDLEKNASIKRVPLPH-----SYYSVNVS  288 (337)
T ss_dssp             SEEEEE--E-------------------------------------SEEEEEETTTTEEEEEEECSS-----CCCEEEEC
T ss_pred             CEEEEe--C-------------------------------------CeEEEEECCCCcCcceecCCC-----ceeeEEEC
Confidence            7 6665  1                                     257888986678777776432     23445543


Q ss_pred             --CCEEEEEecCCCeEEEEeCCCC
Q 018705          323 --DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       323 --~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                        +..||+++. .+.|.++++.+.
T Consensus       289 ~dg~~l~~~~~-~~~i~v~d~~~~  311 (337)
T 1pby_B          289 TDGSTVWLGGA-LGDLAAYDAETL  311 (337)
T ss_dssp             TTSCEEEEESB-SSEEEEEETTTC
T ss_pred             CCCCEEEEEcC-CCcEEEEECcCC
Confidence              456888855 678988887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.28  E-value=1.8e-09  Score=101.76  Aligned_cols=232  Identities=11%  Similarity=0.060  Sum_probs=152.0

Q ss_pred             CCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEee------cCCccccceEEcCCCCEEEEeCCCCeEEEc-C-C
Q 018705           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-E  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~------~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~  122 (351)
                      ..|.+++++| ++.+|++. .++.|..||..+++......      ....+. +++++++|++|++....+.+++. . +
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            3477899996 77777655 46679999998887654321      123455 78999999999988765555554 3 4


Q ss_pred             C--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~  199 (351)
                      +  ...+......+.+++++++|. +|++...                 .+.|..||..+++..........+.+++++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  263 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-----------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSK  263 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEECCCCSEEEEEEECT
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-----------------CCcEEEEECCCCcEEEEecCCCCceEEEEcC
Confidence            4  444443336789999999985 6666643                 4689999998887655555555689999999


Q ss_pred             CCCEEEEEec--------ceeEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHH
Q 018705          200 NEDFVVVCES--------WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELL  270 (351)
Q Consensus       200 dg~~lyv~~~--------~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      +++.++++..        ++.+.+-+...++..... ..++.+.+++++++|+ +|++...                   
T Consensus       264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-------------------  323 (433)
T 3bws_A          264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC-------------------  323 (433)
T ss_dssp             TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT-------------------
T ss_pred             CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC-------------------
Confidence            9998888773        333322222223322111 1223467889999995 7777532                   


Q ss_pred             HhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCC--------------
Q 018705          271 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSN--------------  334 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~--------------  334 (351)
                                       .+.+..+|..+++.+..+...     ..+..+...  +..||+++...+              
T Consensus       324 -----------------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          324 -----------------CSKIEVYDLKEKKVQKSIPVF-----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             -----------------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             -----------------CCEEEEEECCCCcEEEEecCC-----CCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence                             235788888567777766532     135555554  346888876532              


Q ss_pred             eEEEEeCCCC
Q 018705          335 FIGILPLDGP  344 (351)
Q Consensus       335 ~i~~~~~~~~  344 (351)
                      .|..+++.+.
T Consensus       382 ~v~~~d~~~~  391 (433)
T 3bws_A          382 KVYVIDTTTD  391 (433)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEEECCCC
Confidence            7888887653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.28  E-value=6.7e-09  Score=97.86  Aligned_cols=249  Identities=14%  Similarity=0.100  Sum_probs=154.6

Q ss_pred             CceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eEE
Q 018705           54 PEDVSVVVSKGALY-TATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VEA  126 (351)
Q Consensus        54 pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~~  126 (351)
                      ..++++++ ++.+| ++..++.|..||..+++.. .+......+. +++++++|+ +|++....+ +..++. ++  ...
T Consensus       172 v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          172 VETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            45688874 55554 5667899999998777653 3333445677 999999986 557765444 555553 55  333


Q ss_pred             ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      +... ..+.+++++++|. +|++......        +  ...+|.|+.||..+++..........+.+++++|+++.+|
T Consensus       250 ~~~~-~~~~~~~~~~~g~~l~~~~~~~~~--------~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  318 (433)
T 3bws_A          250 TDKI-GLPRGLLLSKDGKELYIAQFSASN--------Q--ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIY  318 (433)
T ss_dssp             CCCC-SEEEEEEECTTSSEEEEEEEESCT--------T--CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEE
T ss_pred             ecCC-CCceEEEEcCCCCEEEEEECCCCc--------c--ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEE
Confidence            3332 5689999999994 6665532100        0  0125689999998887655443344688999999998888


Q ss_pred             EEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCC
Q 018705          206 VCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPM  283 (351)
Q Consensus       206 v~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (351)
                      ++.... .+.+-+...++...... ....+..++++++|+ +|++....+......                 +     .
T Consensus       319 ~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~-----------------~-----~  375 (433)
T 3bws_A          319 VSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY-----------------L-----K  375 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT-----------------T-----S
T ss_pred             EEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc-----------------c-----c
Confidence            886544 33332322233222221 233467889999997 777764321100000                 0     0


Q ss_pred             CCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCC
Q 018705          284 GSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       284 ~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      .+...+.|..+|.++++.+..+...     ..+..+...  +..|++++...+.|..+++.+
T Consensus       376 ~g~~dg~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          376 KGLVLGKVYVIDTTTDTVKEFWEAG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCSSCCEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ccccceEEEEEECCCCcEEEEecCC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            1344568999998778888877642     135666654  456887776678888888754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.27  E-value=4.8e-09  Score=95.14  Aligned_cols=179  Identities=9%  Similarity=0.103  Sum_probs=110.8

Q ss_pred             CCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCe---EEEEeecCCccccceEEcCCCC-EEEEe-CCCCeEEEc-CC-C-
Q 018705           53 HPEDVSVVVSKGALYTATR-DGWVKYFILHNET---LVNWKHIDSQSLLGLTTTKDGG-VILCD-NEKGLLKVT-EE-G-  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~---~~~~~~~~~~p~~gl~~d~~G~-L~v~d-~~~gl~~~~-~~-g-  123 (351)
                      .|.++++++++..+|++.. ++.|..|+..+++   ..........+. +++++++|+ ||+++ ....+..++ .+ + 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            7899999987777888775 7789999874333   222223334578 999999995 78887 334455555 33 6 


Q ss_pred             eEE-----ecCC-CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeC--CCCeEEEee--c----C
Q 018705          124 VEA-----IVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLH--E----G  188 (351)
Q Consensus       124 ~~~-----l~~~-~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~--~----~  188 (351)
                      ...     +... ...|++++++++|. +|+++..                 .+.+..|+.  .+++.+...  .    +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            432     2211 25788999999996 7887643                 356777776  344432211  1    1


Q ss_pred             ---ccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-EEEEE
Q 018705          189 ---FYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       189 ---~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-lwva~  249 (351)
                         ...+.+++++|||+.||++....   .+|-.....+..+.... ...+.|.+++++++|+ ||++.
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence               12455799999999899877533   23322111222222211 1223488999999998 66664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.27  E-value=3.3e-09  Score=94.99  Aligned_cols=218  Identities=11%  Similarity=0.111  Sum_probs=142.4

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecC-CccccceEEcCCCCEEEEeCC--CCeEEEcCCC--eE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHID-SQSLLGLTTTKDGGVILCDNE--KGLLKVTEEG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~-~~p~~gl~~d~~G~L~v~d~~--~gl~~~~~~g--~~  125 (351)
                      ..+.+++++| +|++++ +.+++|+.+|+ +|+.. .+.... .... +..+.++|++++++..  ..++.++++|  +.
T Consensus        37 ~~~~~~~~~p-dG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~  112 (276)
T 3no2_A           37 WECNSVAATK-AGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLS  112 (276)
T ss_dssp             CCCCEEEECT-TSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEE
T ss_pred             CCCcCeEECC-CCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEE
Confidence            3588999995 666777 55778999999 77653 332221 2455 7788899999998765  3577777877  33


Q ss_pred             Eec--CC----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705          126 AIV--PD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (351)
Q Consensus       126 ~l~--~~----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~  199 (351)
                      .+.  ..    ...+..++++++|++++++..                 .++|+.||++ |+..........|.++.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~  174 (276)
T 3no2_A          113 KTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLD  174 (276)
T ss_dssp             EEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECT
T ss_pred             EEeccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcC
Confidence            332  11    145778899999999998865                 5689999998 66544333335688899999


Q ss_pred             CCCEEEEEecce-eEEeecCCCCcee-EEec-cCCC----CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHh
Q 018705          200 NEDFVVVCESWK-RYWLKGDRAGILD-AFIE-NLPG----GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDA  272 (351)
Q Consensus       200 dg~~lyv~~~~~-~~~i~~~~~~~~~-~~~~-~~~g----~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      +|+ +++++..+ ++..-++..|+.. .+.. ..++    .|.++...++|++||+...+....- .             
T Consensus       175 ~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~-~-------------  239 (276)
T 3no2_A          175 NGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREA-G-------------  239 (276)
T ss_dssp             TSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTG-G-------------
T ss_pred             CCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccc-c-------------
Confidence            998 66666554 5544444434432 2221 1221    3677889999999999864311000 0             


Q ss_pred             ccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE
Q 018705          273 YPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE  321 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  321 (351)
                                  ....+.++++++ +|+++=.|.....  +..+++++.
T Consensus       240 ------------~~~~~~~~~~~~-~g~~~W~~~~~~~--~~~~~~~~~  273 (276)
T 3no2_A          240 ------------KGKHPQLVEIDS-EGKVVWQLNDKVK--FGMISTICP  273 (276)
T ss_dssp             ------------GSCCCSEEEECT-TSBEEEEECCTTT--SCCCCEEEE
T ss_pred             ------------ccCCceEEEECC-CCCEEEEecCccc--ccceeeeee
Confidence                        002346899999 9999888865332  556777663

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.27  E-value=4e-09  Score=95.65  Aligned_cols=180  Identities=14%  Similarity=0.202  Sum_probs=113.0

Q ss_pred             CCCceEEEeeCCCeEEEEEcC-CEEEEEEcC--CCeEEEEe--ecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC
Q 018705           52 NHPEDVSVVVSKGALYTATRD-GWVKYFILH--NETLVNWK--HIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~-g~I~~~d~~--~g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g  123 (351)
                      ..|.+++++|++..+|++..+ +.|..|+..  +++.+...  .....|. +++++++|+ ||++....+ +..++. ++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            568999999877789988876 889888765  56654332  2234788 999999997 778876555 444442 33


Q ss_pred             --eEEe--cCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEEee------cCccc
Q 018705          124 --VEAI--VPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLH------EGFYF  191 (351)
Q Consensus       124 --~~~l--~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~------~~~~~  191 (351)
                        .+..  ......+.+++++++|+ +|+++..                 .+.|..||..+ ++.....      .....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  179 (343)
T 1ri6_A          117 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEGAG  179 (343)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred             ccccccccccCCCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecCCCceeeecccccccCCCCC
Confidence              1211  12225689999999995 7777633                 35788888765 5553221      22346


Q ss_pred             cceEEEcCCCCEEEEEecce-e--EEeecCCCCceeEE--eccCC------CCCCceEECCCCC-EEEEE
Q 018705          192 ANGIALSKNEDFVVVCESWK-R--YWLKGDRAGILDAF--IENLP------GGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~-~--~~i~~~~~~~~~~~--~~~~~------g~pd~i~~d~~G~-lwva~  249 (351)
                      |.+++++|+++.+|++.... .  +|-.+...++.+..  ....+      ..+..++++++|+ ||++.
T Consensus       180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence            88999999999898887433 3  33221122332211  11111      1233589999996 66664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.26  E-value=1.1e-09  Score=97.25  Aligned_cols=186  Identities=16%  Similarity=0.101  Sum_probs=123.1

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEEc---CCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCCEEEEeCCC
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEK  114 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~---~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~d~~~  114 (351)
                      ...++.++.+....|.++++++ ++.||+++.   ++.|.++|..++++..-.....  .+. |++++ .++||+++...
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~-g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLL-NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEETTC
T ss_pred             ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEe-CCEEEEEEecC
Confidence            4455667776555689999994 489999875   5789999999998765433333  345 67776 45899999876


Q ss_pred             C-eEEEcC-CC--eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--
Q 018705          115 G-LLKVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--  187 (351)
Q Consensus       115 g-l~~~~~-~g--~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--  187 (351)
                      + +..++. +.  +..+..+  .+.+..+.+|| ++|+++.+                  +.|+.+|+++.+......  
T Consensus        86 ~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~gs------------------~~l~viD~~t~~v~~~I~Vg  145 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSDGT------------------SILYEIDPHTFKLIKKHNVK  145 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEECSS------------------SEEEEECTTTCCEEEEEECE
T ss_pred             CEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEECCC------------------CeEEEEECCCCcEEEEEEEC
Confidence            4 566664 55  4444332  35666677776 79998843                  689999999866543221  


Q ss_pred             ----CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec--cC---------C--CCCCceEECCCC-CEEEE
Q 018705          188 ----GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE--NL---------P--GGPDNINLAPDG-SFWIG  248 (351)
Q Consensus       188 ----~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~--~~---------~--g~pd~i~~d~~G-~lwva  248 (351)
                          ....+|++.+. +| .+|++.... .+.+-+...+++.-.++  ++         +  ..|.||++|++| ++||+
T Consensus       146 ~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          146 YNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             ETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             CCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence                12368999988 66 599987544 44444444444322221  11         0  246899999988 59998


Q ss_pred             Ee
Q 018705          249 LI  250 (351)
Q Consensus       249 ~~  250 (351)
                      ..
T Consensus       224 gk  225 (266)
T 2iwa_A          224 GK  225 (266)
T ss_dssp             ET
T ss_pred             CC
Confidence            64

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.24  E-value=5.8e-09  Score=102.40  Aligned_cols=235  Identities=13%  Similarity=0.135  Sum_probs=148.8

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEc--CCCeEEEEeecCCccccceEEcC----CCC-EEEEeCCCC-eEEEcC-CC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFIL--HNETLVNWKHIDSQSLLGLTTTK----DGG-VILCDNEKG-LLKVTE-EG  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~--~~g~~~~~~~~~~~p~~gl~~d~----~G~-L~v~d~~~g-l~~~~~-~g  123 (351)
                      .|.+++++|++..+|++..++.|..||.  .+++...-...+..|. ++++++    +|+ ||+++...+ +..++. ++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            3789999988889999999999999999  6776543334566788 999999    985 788775444 444443 44


Q ss_pred             --eEEecCC-----------CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-E-Eeec
Q 018705          124 --VEAIVPD-----------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-T-VLHE  187 (351)
Q Consensus       124 --~~~l~~~-----------~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~-~~~~  187 (351)
                        ++.+...           ...+.++++++++ .+|++...                 .+.|+.+|.++++. . ....
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------------~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECTTSSSCEEEEEE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------------CCeEEEEEecCCCcceeEEec
Confidence              4444321           1256789999977 46666543                 57899998765432 1 1123


Q ss_pred             CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec-c-CCCCC-CceE-ECCC-CCEEEEEecCCchhhhhhh
Q 018705          188 GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE-N-LPGGP-DNIN-LAPD-GSFWIGLIKMNQTGVRAIQ  261 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~-~-~~g~p-d~i~-~d~~-G~lwva~~~~~~~~~~~~~  261 (351)
                      ...+|.+++++|||+++|++.... .+.+-+...++.....+ . .| .| .+.. .+++ |.+|++....         
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~---------  391 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLG---------  391 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSS---------
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC-CCCCCcccCCCCCccEEEeccCC---------
Confidence            356799999999999888876543 33333333344322221 1 11 12 2443 3565 7789876421         


Q ss_pred             cChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC-------CeEEEEEECCCCCcccceeEEEE--ECCEEEEEecC
Q 018705          262 KCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND-------GKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQ  332 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~~  332 (351)
                                                .+.|..+|..+       ++.+..+..+.+.    ...+..  ++..||+++..
T Consensus       392 --------------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~----~~~v~~~pdg~~l~v~~~~  441 (543)
T 1nir_A          392 --------------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGGG----SLFIKTHPKSSHLYVDTTF  441 (543)
T ss_dssp             --------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCCEEEECCTT
T ss_pred             --------------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCCC----ceEEEcCCCCCcEEEecCC
Confidence                                      12456666533       6888888764332    222333  45789998732


Q ss_pred             ------CCeEEEEeCCCCC
Q 018705          333 ------SNFIGILPLDGPE  345 (351)
Q Consensus       333 ------~~~i~~~~~~~~~  345 (351)
                            ...|.++++.+.+
T Consensus       442 ~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          442 NPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             CSSHHHHTCEEEEETTCTT
T ss_pred             CCCcccCceEEEEECCCCC
Confidence                  3489999988765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.23  E-value=6e-08  Score=88.35  Aligned_cols=233  Identities=14%  Similarity=0.124  Sum_probs=151.1

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--  123 (351)
                      +.-..-.++++.+.+..+.++..|+.|..||..+++.. .+........ .+++.++|+.+++....+.+++.  .++  
T Consensus        78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred             cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence            33344567888866677888999999999999887653 3333334556 89999999887776666666665  344  


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~  202 (351)
                      ...+......+.+++++|+|.+.++.+.                 +|.|..||..+++......+ ....+.++++|+++
T Consensus       157 ~~~~~~~~~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~  219 (321)
T 3ow8_A          157 EYSLDTRGKFILSIAYSPDGKYLASGAI-----------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ  219 (321)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC
T ss_pred             eEEecCCCceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC
Confidence            3334333356888999999987776543                 46799999888776443333 33467899999999


Q ss_pred             EEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          203 FVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      .|..+..++  ++|-.  ..+.. ..+. ...+....+++.++|.+.++...                            
T Consensus       220 ~l~s~s~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~----------------------------  268 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDV--QHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSS----------------------------  268 (321)
T ss_dssp             EEEEECTTSCEEEEET--TTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEET----------------------------
T ss_pred             EEEEEcCCCeEEEEEC--CCcceeEEEc-CCCCceEEEEECCCCCEEEEEeC----------------------------
Confidence            776666665  55522  12222 2222 22233456789999987776543                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~  342 (351)
                              .+.|..+|..+++.+..+..+.+    .+.++... ++...++....+.|..++.|
T Consensus       269 --------D~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 --------DKSVKVWDVGTRTCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             --------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             --------CCcEEEEeCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                    13466778757788877765443    46677664 34444444446667777754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.22  E-value=7.2e-08  Score=86.81  Aligned_cols=240  Identities=12%  Similarity=0.161  Sum_probs=150.3

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--  123 (351)
                      +.-..-.+++++|++..+.++..+|.|..|+..+++.... ........ .++++++|+++++....+.+++.  .++  
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence            4334557899998777888999999999999877766443 22334456 89999999877766566766666  344  


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~  202 (351)
                      ...+......+..+++.+++.+.++.+.                 ++.|..||..+++..... ........++++++++
T Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
T 4ery_A          100 LKTLKGHSNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS  162 (312)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence            4555444467888999999987777654                 467999998776653333 2233457899999999


Q ss_pred             EEEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          203 FVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      .++.+..++  ++|  +...++ ...+..........++++++|++.++...                            
T Consensus       163 ~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------  212 (312)
T 4ery_A          163 LIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----------------------------  212 (312)
T ss_dssp             EEEEEETTSCEEEE--ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----------------------------
T ss_pred             EEEEEeCCCcEEEE--ECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----------------------------
Confidence            777776666  444  222222 22222111111234688999987666443                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                              .+.|..+|..+++.+..+..+..............++.+.++....+.|..+++.+.
T Consensus       213 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          213 --------DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             --------TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             --------CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence                    135677787677777777654432221112222234554444444667777777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=8.1e-09  Score=95.20  Aligned_cols=231  Identities=19%  Similarity=0.232  Sum_probs=135.9

Q ss_pred             cCCCceEEEeeCCCeEEEEEcC----CEE--EEEEcCCCeEEEEee---cCCccccceEEcCCC-CEEEEeCCCCeEEE-
Q 018705           51 VNHPEDVSVVVSKGALYTATRD----GWV--KYFILHNETLVNWKH---IDSQSLLGLTTTKDG-GVILCDNEKGLLKV-  119 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~----g~I--~~~d~~~g~~~~~~~---~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~-  119 (351)
                      ...|..++++|++..+|++..+    +.|  +.++..+|+.+.+..   ....|. .+++  +| .||+++...+.+.+ 
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            5689999999877789998774    677  455665577655432   345688 8888  55 58888866554333 


Q ss_pred             c--CCC-eEEe----c-CC---------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEE--eCCC
Q 018705          120 T--EEG-VEAI----V-PD---------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY--DPKL  179 (351)
Q Consensus       120 ~--~~g-~~~l----~-~~---------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~~  179 (351)
                      +  .++ ...+    . ..         ...+.+++++|||+ +|+++..                 .+.+..|  +..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCC
Confidence            3  234 2211    1 11         02347799999996 8888754                 3455555  5544


Q ss_pred             C----e-E-------EEeecCccccceEEEcCCCCEEEEEecc-e---eEEeecCCCCceeEEec--cCC---CCCCceE
Q 018705          180 K----E-T-------TVLHEGFYFANGIALSKNEDFVVVCESW-K---RYWLKGDRAGILDAFIE--NLP---GGPDNIN  238 (351)
Q Consensus       180 ~----~-~-------~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~---~~~i~~~~~~~~~~~~~--~~~---g~pd~i~  238 (351)
                      +    + +       .........|.+++++|||+++|++... +   .+.+.   .++.+....  ..+   ..|.+++
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~---~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA---DGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE---TTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec---CCceEEeEEEecCCCCCCCcccEE
Confidence            3    2 2       1122334578899999999999998743 3   23333   233222111  111   1245789


Q ss_pred             ECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeE--EEEEECCCCCcccc
Q 018705          239 LAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDPDATYISF  315 (351)
Q Consensus       239 ~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~g~~~~~  315 (351)
                      ++++|+ ||++....                                 ...-.++.+++++|+.  +..+..  +.   .
T Consensus       266 ~spdg~~l~v~~~~~---------------------------------~~~i~v~~~~~~~g~~~~~~~~~~--g~---~  307 (361)
T 3scy_A          266 LSPDGKYLYASNRLK---------------------------------ADGVAIFKVDETNGTLTKVGYQLT--GI---H  307 (361)
T ss_dssp             ECTTSSEEEEEECSS---------------------------------SCEEEEEEECTTTCCEEEEEEEEC--SS---C
T ss_pred             ECCCCCEEEEECCCC---------------------------------CCEEEEEEEcCCCCcEEEeeEecC--CC---C
Confidence            999998 66664320                                 0112355566435653  333432  21   3


Q ss_pred             eeEEEEE--CCEEEEEecCCCeEEEEeCC
Q 018705          316 VTSAAEF--DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       316 ~~~~~~~--~g~L~ig~~~~~~i~~~~~~  342 (351)
                      +..+...  +..||+++...+.+.++++.
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            4455543  45699998777888886544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.22  E-value=7.6e-09  Score=93.56  Aligned_cols=213  Identities=15%  Similarity=0.059  Sum_probs=132.0

Q ss_pred             CCceEEEeeCCCeEEEEE------------cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEE
Q 018705           53 HPEDVSVVVSKGALYTAT------------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKV  119 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~------------~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~  119 (351)
                      .|.+++++++++.+|++.            .++.|+.+|..+++..........|. +++++++|+ ||+++  +.++.+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~--~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-MLAWARDGSKLYGLG--RDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-CEEECTTSSCEEEES--SSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-eeEECCCCCEEEEeC--CeEEEE
Confidence            688999997777899886            56899999998887654444456788 999999996 78873  467777


Q ss_pred             cC-CC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccc------cCCceEEEEeCCCCeEEEee--c
Q 018705          120 TE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEG------KPYGQLRKYDPKLKETTVLH--E  187 (351)
Q Consensus       120 ~~-~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~------~~~g~l~~~d~~~~~~~~~~--~  187 (351)
                      +. ++  ...+... ..+..+++++||. +|++......-...+......+      .....|+.+|.++++.....  .
T Consensus       160 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          160 DPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            74 55  3333322 2233446788874 6665432110000000000000      11126899999988765221  2


Q ss_pred             CccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhH
Q 018705          188 GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREK  266 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~  266 (351)
                      ....++++++++||+.+|+++  +.+.+-+...++..... ..+..|.+++++++|+ +|++..                
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~~--~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~----------------  299 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGA----------------  299 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESB----------------
T ss_pred             CCCceeeEEECCCCCEEEEeC--CeEEEEECCCCcCccee-cCCCceeeEEECCCCCEEEEEcC----------------
Confidence            234678899999999999883  33332222233322222 1334688999999997 677622                


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCC
Q 018705          267 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD  309 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~  309 (351)
                                           .+.|..+|.++++.+..+..+.
T Consensus       300 ---------------------~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          300 ---------------------LGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             ---------------------SSEEEEEETTTCCEEEEEECGG
T ss_pred             ---------------------CCcEEEEECcCCcEEEEEEcCC
Confidence                                 1358888986788888886543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.21  E-value=5.5e-08  Score=87.67  Aligned_cols=228  Identities=11%  Similarity=0.007  Sum_probs=142.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCCCCEEEEeCCCC-eEEEcC-CC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~  125 (351)
                      ...++++++++..++++..+|.|..|+..+++..   .+........ .++++++++++++....+ +..++. ++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            4568899977778899999999999998776532   2223334456 899999997655443444 444443 55  44


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEE
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      .+......+.+++++++|..+++.+.                 +|.|..||..+++.............++++|+++.++
T Consensus       178 ~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          178 QFQGHTDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             eeecccCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE
Confidence            45443467889999999976666543                 4689999988777655444445567899999999888


Q ss_pred             EEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCC
Q 018705          206 VCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  285 (351)
Q Consensus       206 v~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
                      ++...+.+.+-+...++...+. ...+....+.++++|++.++...                                  
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~----------------------------------  285 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVSTGK----------------------------------  285 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEEET----------------------------------
T ss_pred             EEcCCCcEEEEECCCCCeEEEc-CCccceeEEEECCCCCEEEEecC----------------------------------
Confidence            7776662222222222222222 22333466789999987666543                                  


Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEEecCCCeEEEEeC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGILPL  341 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig~~~~~~i~~~~~  341 (351)
                        .+.+..++.++++.+..... .    ..++++... ++ .|+.++. .+.|..+++
T Consensus       286 --dg~i~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~  335 (337)
T 1gxr_A          286 --DNLLNAWRTPYGASIFQSKE-S----SSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             --TSEEEEEETTTCCEEEEEEC-S----SCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             --CCcEEEEECCCCeEEEEecC-C----CcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence              23577778756666544432 1    245666654 33 4555553 566776654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.19  E-value=1.7e-08  Score=99.11  Aligned_cols=229  Identities=10%  Similarity=-0.009  Sum_probs=146.3

Q ss_pred             EEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC---CC--eEEecCC
Q 018705           58 SVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG--VEAIVPD  130 (351)
Q Consensus        58 ~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~---~g--~~~l~~~  130 (351)
                      ++++ ++.+|++. .++.|..||..+++.......+..++ +++++++|+ ||+++..+.+..++.   ++  ...+...
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence            4774 56777655 57899999998887644333344488 999999995 788887755655554   33  3334433


Q ss_pred             CCCcccEEEcc----CCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------------ccccc
Q 018705          131 ASFTNDVIAAS----DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------FYFAN  193 (351)
Q Consensus       131 ~~~~n~l~~d~----dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~n  193 (351)
                       ..|.+++++|    ||+ +|+++..                 .+.|..||..+++.......            ...+.
T Consensus       222 -~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~  283 (543)
T 1nir_A          222 -IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA  283 (543)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             -CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence             5799999999    985 7777642                 35788889887765433221            11456


Q ss_pred             eEEEcCCCCEEEEEecce-eEEeecCCCCc-eeE-EeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHH
Q 018705          194 GIALSKNEDFVVVCESWK-RYWLKGDRAGI-LDA-FIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWEL  269 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~-~~~i~~~~~~~-~~~-~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~  269 (351)
                      +|++++++..+|++.... .+++.+....+ ... .. .....|.++.+|++|+ +|++....                 
T Consensus       284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~-----------------  345 (543)
T 1nir_A          284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNS-----------------  345 (543)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGG-----------------
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCC-----------------
Confidence            899999998888876544 55554322111 111 11 1234688999999998 55654321                 


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEec-CCCeEEEEeCCC
Q 018705          270 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASL-QSNFIGILPLDG  343 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~-~~~~i~~~~~~~  343 (351)
                                         ..|..+|.++|+.+..+.............+.. .++.+|+++. ..+.|..+++.+
T Consensus       346 -------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          346 -------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             -------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence                               257779987888888876421111111122222 2478998874 468899998876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=1.7e-09  Score=95.04  Aligned_cols=135  Identities=21%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      ...|+++.+  ++.+|+.+. ++.++.+|+++.+...-........ |++.|. ++||+++....+..+|+ +.  ...+
T Consensus        87 ~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           87 YFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHND-QYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEECS-SCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             cceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecCC-CEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            345888887  679999874 7889999998877643323344556 777653 58999997667888886 44  3333


Q ss_pred             cCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-------------c
Q 018705          128 VPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-------------F  189 (351)
Q Consensus       128 ~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------------~  189 (351)
                      ...     ...+|.+... +|.||++...                 .+.|.++||++|++....+-             .
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~  224 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI  224 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred             EeccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence            221     1567777776 8899998865                 45899999999998655422             2


Q ss_pred             cccceEEEcCCCCEEEEEe
Q 018705          190 YFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~  208 (351)
                      ..+||||++|++++|||+.
T Consensus       225 ~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          225 DVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEEC
Confidence            3679999999999999976

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.19  E-value=2.4e-08  Score=90.81  Aligned_cols=214  Identities=14%  Similarity=0.041  Sum_probs=125.2

Q ss_pred             CCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecC-------CccccceEEcCCCC-EEEEeCC----------
Q 018705           53 HPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHID-------SQSLLGLTTTKDGG-VILCDNE----------  113 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~-------~~p~~gl~~d~~G~-L~v~d~~----------  113 (351)
                      .|.+++++++++.+|+.. .++.|+.+|..+++........       ..|. +++++++|+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            689999997777788766 5789999999888764332221       2377 999999995 6666632          


Q ss_pred             --CCeEEEcC-CC-----eEEecCCCCCcccEEEccCCcEEEEeCC-CccCCcccc-ccccc-cc---------------
Q 018705          114 --KGLLKVTE-EG-----VEAIVPDASFTNDVIAASDGTLYFTVAS-TKYTPTDFY-KDMAE-GK---------------  167 (351)
Q Consensus       114 --~gl~~~~~-~g-----~~~l~~~~~~~n~l~~d~dG~ly~t~~~-~~~~~~~~~-~~~~~-~~---------------  167 (351)
                        ..+..++. ++     ...+... ..+.++++++||++|++... ..+...... ...+. +.               
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  201 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             CCCeEEEEECCCccccceeeeccCC-CcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeee
Confidence              45666663 43     2222222 46788899999998875431 001110000 00000 00               


Q ss_pred             -----------------------------CCceEEEEeCCCCeEEEee--cCccccceEEEcC-CCCEEEEEecceeEEe
Q 018705          168 -----------------------------PYGQLRKYDPKLKETTVLH--EGFYFANGIALSK-NEDFVVVCESWKRYWL  215 (351)
Q Consensus       168 -----------------------------~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~-dg~~lyv~~~~~~~~i  215 (351)
                                                   ....++.+|..+++++.+.  .....+.+++++| |++.+|++  .+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~  279 (349)
T 1jmx_B          202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK  279 (349)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred             cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence                                         0001223555555544332  1223577889999 99989888  333333


Q ss_pred             ecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018705          216 KGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV  294 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  294 (351)
                      -+...++..... .....+.+++++++|+ ||++...                                     +.|..+
T Consensus       280 ~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------------~~v~v~  321 (349)
T 1jmx_B          280 YDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTF-------------------------------------NDLAVF  321 (349)
T ss_dssp             EETTTTEEEEEE-ECSSCCCEEEECSSSSCEEEESBS-------------------------------------SEEEEE
T ss_pred             EECccCeEEEEE-cCCCCccceEECCCCCEEEEecCC-------------------------------------CeEEEE
Confidence            222233332222 1234578899999985 7774211                                     358888


Q ss_pred             ECCCCeEEEEEECC
Q 018705          295 DGNDGKIIRDFNDP  308 (351)
Q Consensus       295 ~~~~g~~~~~~~~~  308 (351)
                      |.++++.+..+..+
T Consensus       322 d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          322 NPDTLEKVKNIKLP  335 (349)
T ss_dssp             ETTTTEEEEEEECS
T ss_pred             eccccceeeeeecC
Confidence            98678888888765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.18  E-value=4.2e-08  Score=95.95  Aligned_cols=228  Identities=14%  Similarity=0.200  Sum_probs=148.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEecC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVP  129 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l~~  129 (351)
                      ...++++.|++..+.++..+|.|..|+..+.+...+......+. ++++.++|+.+++....+.+++. .++  ...+..
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~  383 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  383 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC
Confidence            34578899777788889999999999986666666554445566 89999999877665556666665 455  555544


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ....+.++++++||...++.+.                 ++.|..||.+......+...-....+++++||++.|..+..
T Consensus       384 ~~~~v~~~~~s~dg~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          384 HSSSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEET-----------------TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence            4467889999999976665543                 46788888764444444444445678999999997777666


Q ss_pred             ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ++  ++|-  ........+. ........++++++|++.++...                                    
T Consensus       447 d~~v~~w~--~~~~~~~~~~-~~~~~v~~~~~spd~~~las~~~------------------------------------  487 (577)
T 2ymu_A          447 DKTVKLWN--RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD------------------------------------  487 (577)
T ss_dssp             TSEEEEEE--TTSCEEEEEE-CCSSCEEEEEECTTSCEEEEEET------------------------------------
T ss_pred             CCEEEEEE--CCCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC------------------------------------
Confidence            65  5552  2222222222 22223456789999987776543                                    


Q ss_pred             ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCC
Q 018705          288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~  342 (351)
                      .+.|..+|. +|+.+..+..+.+    .++++... +|++.+.......|..++++
T Consensus       488 d~~i~iw~~-~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          488 DKTVKLWNR-NGQLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CCEEEEEcC-CCCEEEEEeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            134666787 8888887765443    36666654 34433333335556666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.18  E-value=2e-10  Score=110.18  Aligned_cols=166  Identities=9%  Similarity=0.105  Sum_probs=113.2

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEcCC-EEEEEEcCCCeEEEEee---------cCCccccceEEcC----CCCE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKH---------IDSQSLLGLTTTK----DGGV  107 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g-~I~~~d~~~g~~~~~~~---------~~~~p~~gl~~d~----~G~L  107 (351)
                      .+++++.+ +..|.+|+++ .+|++||+...| +|++++..+|+.+.+..         ..+-++ ||++++    +|.|
T Consensus        18 ~~~~~a~~-l~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~l   94 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYI   94 (454)
T ss_dssp             CEEEEECC-CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEE
T ss_pred             EEEEEECC-CCCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEE
Confidence            35667766 8899999999 577899988876 79999876676654431         123467 999998    6899


Q ss_pred             EEEeCC-------------CCeEEEcC---CC----eEEecC----C-CCCcccEEEccCCcEEEEeCCCccCCc-cccc
Q 018705          108 ILCDNE-------------KGLLKVTE---EG----VEAIVP----D-ASFTNDVIAASDGTLYFTVASTKYTPT-DFYK  161 (351)
Q Consensus       108 ~v~d~~-------------~gl~~~~~---~g----~~~l~~----~-~~~~n~l~~d~dG~ly~t~~~~~~~~~-~~~~  161 (351)
                      |++...             ..|+++..   ++    .+++..    . ...+++|++++||.|||+......... ....
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~  174 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL  174 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccc
Confidence            998752             35777762   22    222221    1 256899999999999999753211000 0000


Q ss_pred             --------------ccccccCCceEEEEeCCCC-----------eEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          162 --------------DMAEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       162 --------------~~~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                                    .--.....|.|+|+++++.           +.+++..++.+|.|++++++|+ ||+++.+.
T Consensus       175 ~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~  248 (454)
T 1cru_A          175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGP  248 (454)
T ss_dssp             CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECS
T ss_pred             ccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCC
Confidence                          0000123588999999854           4567788899999999999886 99999754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=5.3e-09  Score=99.18  Aligned_cols=222  Identities=14%  Similarity=0.081  Sum_probs=133.9

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEE-Eeec-------CCccccceEEcCCC
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTAT----------RDGWVKYFILHNETLVN-WKHI-------DSQSLLGLTTTKDG  105 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~-~~~~-------~~~p~~gl~~d~~G  105 (351)
                      ..|..|  ..| +++++|++..+|++.          .++.|..+|..+++... +.-.       ...|. ++++++||
T Consensus       113 ~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spDG  188 (426)
T 3c75_H          113 GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPDN  188 (426)
T ss_dssp             EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTTS
T ss_pred             EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCCC
Confidence            446666  358 999999889999987          35679999998887643 3222       35699 99999999


Q ss_pred             -CEEEEeCC--CCeEEEcC-CC--eEEecCCC---CCccc----EEEccCCcE-EEEeCCCcc--------CCccc----
Q 018705          106 -GVILCDNE--KGLLKVTE-EG--VEAIVPDA---SFTND----VIAASDGTL-YFTVASTKY--------TPTDF----  159 (351)
Q Consensus       106 -~L~v~d~~--~gl~~~~~-~g--~~~l~~~~---~~~n~----l~~d~dG~l-y~t~~~~~~--------~~~~~----  159 (351)
                       .|||++..  +.+..+|. ++  +..+....   ..|.+    +++.+||.+ |++....+.        .....    
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~  268 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLIN  268 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCS
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceee
Confidence             58998753  45777774 55  44443321   12333    667788864 454422111        10000    


Q ss_pred             -------ccccccccCCceEEEEeCCCCeEEEeec----------Cccccce---EEEcCCCCEEEEEec----------
Q 018705          160 -------YKDMAEGKPYGQLRKYDPKLKETTVLHE----------GFYFANG---IALSKNEDFVVVCES----------  209 (351)
Q Consensus       160 -------~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~ng---i~~~~dg~~lyv~~~----------  209 (351)
                             ...++.-...+.|+.+|..++.......          ....|.|   +++++|++++|++..          
T Consensus       269 ~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~  348 (426)
T 3c75_H          269 HPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA  348 (426)
T ss_dssp             CCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred             EeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence                   0011111224567777765544433211          0123555   899999999999863          


Q ss_pred             ceeEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCc
Q 018705          210 WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAG  288 (351)
Q Consensus       210 ~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (351)
                      .+.+++-+....+...-+ ..+..|.++.++++|+ +|......                                   .
T Consensus       349 s~~VsVID~~T~kvv~~I-~vg~~P~gia~spDg~~~lyv~n~~-----------------------------------s  392 (426)
T 3c75_H          349 SRFVVVLNAETGERINKI-ELGHEIDSINVSQDAEPLLYALSAG-----------------------------------T  392 (426)
T ss_dssp             EEEEEEEETTTCCEEEEE-EEEEEECEEEECCSSSCEEEEEETT-----------------------------------T
T ss_pred             CCEEEEEECCCCeEEEEE-ECCCCcCeEEEccCCCEEEEEEcCC-----------------------------------C
Confidence            124555443333322111 1234689999999998 55554321                                   2


Q ss_pred             eEEEEEECCCCeEEEEE
Q 018705          289 ARVVKVDGNDGKIIRDF  305 (351)
Q Consensus       289 ~~v~~~~~~~g~~~~~~  305 (351)
                      +.|..||.++++++..+
T Consensus       393 ~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          393 QTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TEEEEEETTTCCEEEEE
T ss_pred             CeEEEEECCCCCEEEEe
Confidence            36899999889998887

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.17  E-value=3.8e-08  Score=96.27  Aligned_cols=223  Identities=14%  Similarity=0.183  Sum_probs=144.9

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEecC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVP  129 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l~~  129 (351)
                      ...+++++|++..+.++..+|.|..++........+......+. +++++++|+.+++....+.+++. .++  .+.+..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~  424 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  424 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC
Confidence            44578999777788889999999999974444444444445566 89999999766655455666665 455  555544


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEec
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ....+.+++++||+...++.+.                 ++.|..||...+....+.........++++||++.|..+..
T Consensus       425 ~~~~v~~~~~s~d~~~l~~~~~-----------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          425 HSSSVWGVAFSPDDQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            4467888999999987776543                 46788888765555555444455678999999997766665


Q ss_pred             ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          210 WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       210 ~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                      ++  ++|-.  .......+. ...+....++++++|++.++...                                    
T Consensus       488 d~~i~iw~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~------------------------------------  528 (577)
T 2ymu_A          488 DKTVKLWNR--NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD------------------------------------  528 (577)
T ss_dssp             TSEEEEEET--TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEET------------------------------------
T ss_pred             CCEEEEEcC--CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEEC------------------------------------
Confidence            55  55532  111222232 22223456789999987666443                                    


Q ss_pred             ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEE
Q 018705          288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIG  337 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~  337 (351)
                      .+.|..+|. +|+.+..+..+.+    .++++... +|+..++......|.
T Consensus       529 dg~v~lwd~-~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~D~~i~  574 (577)
T 2ymu_A          529 DKTVKLWNR-NGQLLQTLTGHSS----SVWGVAFSPDGQTIASASSDKTVK  574 (577)
T ss_dssp             TSEEEEECT-TSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEE
T ss_pred             cCEEEEEeC-CCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCEEE
Confidence            245777898 9998888876544    46677664 344434333233343

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.16  E-value=6.7e-09  Score=91.28  Aligned_cols=192  Identities=11%  Similarity=0.086  Sum_probs=124.1

Q ss_pred             ccceEEcCCCCEEEEeCCC---CeEEEcC-CC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705           96 LLGLTTTKDGGVILCDNEK---GLLKVTE-EG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        96 ~~gl~~d~~G~L~v~d~~~---gl~~~~~-~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      . ||.++ +|.||+++...   .+.+++. +|  ...+... ..+..+++++ +++||+.+..                 
T Consensus        46 q-GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~-----------------  105 (262)
T 3nol_A           46 E-GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWK-----------------  105 (262)
T ss_dssp             E-EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESS-----------------
T ss_pred             c-eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEee-----------------
Confidence            5 99998 78999998654   4777884 66  3333222 1344556665 3489998864                 


Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCcee-E-Eec--cCC-CCCCceEECCCC
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILD-A-FIE--NLP-GGPDNINLAPDG  243 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~-~-~~~--~~~-g~pd~i~~d~~G  243 (351)
                      .+.+++||+++.+...-..-.  +.|..+++|++.||+++..++++.-++...+.. . -+.  +.+ ..++.+.+. +|
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~--~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYD--GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECS--SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CCEEEEEECccCcEEEEEECC--CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            468999999887654332222  345555567778999985446665554333321 1 111  111 123346665 78


Q ss_pred             CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCC--------Ccccc
Q 018705          244 SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA--------TYISF  315 (351)
Q Consensus       244 ~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g--------~~~~~  315 (351)
                      .||+.....                                    ..|.++||++|+++..+..+.-        .....
T Consensus       183 ~lyan~w~~------------------------------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          183 EIFANVWQT------------------------------------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             EEEEEETTS------------------------------------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             EEEEEEccC------------------------------------CeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence            999886432                                    3699999999999999875321        11235


Q ss_pred             eeEEEEE--CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          316 VTSAAEF--DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       316 ~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                      ..+++.+  +++||++....+.++.+++....|
T Consensus       227 lNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~~~~  259 (262)
T 3nol_A          227 LNGIAWDKEHHRLFVTGKLWPKVFEITLTQRVG  259 (262)
T ss_dssp             EEEEEEETTTTEEEEEETTCSEEEEEEEEECC-
T ss_pred             eEEEEEcCCCCEEEEECCCCCceEEEEEecCCC
Confidence            5677765  589999999999999999865544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=3.4e-09  Score=93.24  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             CCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      ...|+++.+  ++.+|+.+ .++.++.+|.++.+...-......+. |++.|. ++||+++....+..+|+ +.  ...+
T Consensus        96 ~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A           96 IFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             CCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEET-TEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             cceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecCC-CEEEEECCCCEEEEEcCCCCeEEEEE
Confidence            345888886  67899876 47889999998887643333345567 888763 58999997667888886 44  3333


Q ss_pred             cCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--------------
Q 018705          128 VPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------------  188 (351)
Q Consensus       128 ~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------------  188 (351)
                      ...     ..++|.+... +|.||++...                 .+.|.++||++|++....+-              
T Consensus       172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~  233 (268)
T 3nok_A          172 QVKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP  233 (268)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT
T ss_pred             EeCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCc
Confidence            221     1567888876 8899998864                 35899999999998654321              


Q ss_pred             ccccceEEEcCCCCEEEEEe
Q 018705          189 FYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~  208 (351)
                      ...+||||+++++++|||+.
T Consensus       234 ~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          234 EAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCCEEEEEECTTTCCEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEeC
Confidence            13689999999999899975

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.14  E-value=2.4e-08  Score=87.98  Aligned_cols=183  Identities=9%  Similarity=0.099  Sum_probs=116.8

Q ss_pred             CCcCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEE-EEeec-CCccccceEEcCCCCEEEEeCCC-CeEEEc--CC
Q 018705           49 GCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLV-NWKHI-DSQSLLGLTTTKDGGVILCDNEK-GLLKVT--EE  122 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~-~~~~~-~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~--~~  122 (351)
                      |-...+.+++++++++.||+ ...+++|+++|.+ |++. .+... ...+- ||+++++|.+||++... +++.+.  .+
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            33356889999988889996 6778999999996 6654 33222 25788 99999999999987554 555554  33


Q ss_pred             C-eEE---ecCC------CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeC--CCCeEEEeec--
Q 018705          123 G-VEA---IVPD------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLHE--  187 (351)
Q Consensus       123 g-~~~---l~~~------~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~~--  187 (351)
                      + ...   ....      .....+|++|+++ +||++....                ...||.|+.  .+..++....  
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------p~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------PIEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------SEEEEEEESTTCSSCCEEEECHH
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------CceEEEEcccccCCceeeecchh
Confidence            4 222   1111      1446899999987 899876431                226888872  2223333211  


Q ss_pred             -----CccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec---cCC------CCCCceEECCCCCEEEEEe
Q 018705          188 -----GFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE---NLP------GGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       188 -----~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~---~~~------g~pd~i~~d~~G~lwva~~  250 (351)
                           ...-+.+++++|..+.+|+.+... ++..-+. .++...+..   +..      ..|.||++|++|+|||...
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence                 133577999999888888865444 4433332 233322221   110      1478999999999999853

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.14  E-value=7.8e-08  Score=88.51  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=110.9

Q ss_pred             CCCceEEEeeCCCeEEEEE-cCCEEEEEEcCC-CeEEE----Eeec----------CCccccceEEcCCCC-EEEEeCCC
Q 018705           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHN-ETLVN----WKHI----------DSQSLLGLTTTKDGG-VILCDNEK  114 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~-g~~~~----~~~~----------~~~p~~gl~~d~~G~-L~v~d~~~  114 (351)
                      ..|..+++  +++.+|++. .++.|..++... +.+..    ....          ...++ +++++++|+ ||+++...
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~  176 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGT  176 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCC
Confidence            46788888  477888877 477888888743 33211    1111          12346 799999997 88888765


Q ss_pred             CeEEE---cC-CC------e------EEec-CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705          115 GLLKV---TE-EG------V------EAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (351)
Q Consensus       115 gl~~~---~~-~g------~------~~l~-~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (351)
                      +.+++   +. .+      .      .... .....|++++++|||+ +|+++..                 .+.|..|+
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~  239 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFR  239 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEE
T ss_pred             CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEE
Confidence            43333   32 21      1      1111 1126789999999995 7887743                 35687887


Q ss_pred             CCCCeEEEeec------CccccceEEEcCCCCEEEEEecc--e--eEEeecCCCCceeEEec-cCCCCCCceEECCCCC-
Q 018705          177 PKLKETTVLHE------GFYFANGIALSKNEDFVVVCESW--K--RYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-  244 (351)
Q Consensus       177 ~~~~~~~~~~~------~~~~~ngi~~~~dg~~lyv~~~~--~--~~~i~~~~~~~~~~~~~-~~~g~pd~i~~d~~G~-  244 (351)
                      .++++.+.+..      ....|.+++++|||++||++...  +  ++|-.+...++.+.... .....|.+++++++|+ 
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~  319 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKY  319 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCE
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCE
Confidence            66676543321      23456799999999999998876  3  33323222333322211 1134688999999997 


Q ss_pred             EEEEEe
Q 018705          245 FWIGLI  250 (351)
Q Consensus       245 lwva~~  250 (351)
                      ||++..
T Consensus       320 l~~~~~  325 (361)
T 3scy_A          320 LLVACR  325 (361)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            777653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.13  E-value=5.7e-09  Score=90.94  Aligned_cols=136  Identities=18%  Similarity=0.127  Sum_probs=98.2

Q ss_pred             cCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEE
Q 018705           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEA  126 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~  126 (351)
                      ....|+++.+  ++.+|+.+ .++.++.+|.++.+...-....+.+. |++.| .++||+++....+..+|+ +.  ...
T Consensus        64 ~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X           64 PYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEE
Confidence            3456888886  68899876 47889999998887643333345566 77765 358999998777888886 43  333


Q ss_pred             ecCC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--------------
Q 018705          127 IVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--------------  187 (351)
Q Consensus       127 l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------------  187 (351)
                      +...     ...+|.+... +|.+|+....                 ...|.++||++|++....+              
T Consensus       140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~  201 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDS  201 (243)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT
T ss_pred             EEEccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCC
Confidence            3221     1566777755 8899988865                 3589999999999865432              


Q ss_pred             CccccceEEEcCCCCEEEEEe
Q 018705          188 GFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      ....+||||+++++++|||+.
T Consensus       202 ~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          202 TNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEC
Confidence            123689999999999999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.10  E-value=5.1e-08  Score=89.77  Aligned_cols=218  Identities=12%  Similarity=0.132  Sum_probs=127.0

Q ss_pred             EEEEeecCCccccceEEcCCCCEEEEeC-CCCeEEEcC-CC-eEEec-------CCCCCcccEEEcc----CCcEEEEeC
Q 018705           85 LVNWKHIDSQSLLGLTTTKDGGVILCDN-EKGLLKVTE-EG-VEAIV-------PDASFTNDVIAAS----DGTLYFTVA  150 (351)
Q Consensus        85 ~~~~~~~~~~p~~gl~~d~~G~L~v~d~-~~gl~~~~~-~g-~~~l~-------~~~~~~n~l~~d~----dG~ly~t~~  150 (351)
                      ++.+...-..|. +|++.++|+|||++. .+.++++++ +| .+.+.       .....+.+|+++|    +|.||++.+
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            344444456799 999999999999998 556888875 45 44332       1226789999998    488999764


Q ss_pred             CCccCCcccccccccccCCceEEEEeCCCC--------eEEEeec-----CccccceEEEcCCCCEEEEEecc-------
Q 018705          151 STKYTPTDFYKDMAEGKPYGQLRKYDPKLK--------ETTVLHE-----GFYFANGIALSKNEDFVVVCESW-------  210 (351)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~-----~~~~~ngi~~~~dg~~lyv~~~~-------  210 (351)
                      ..               ..++|.||..+.+        +.+.+..     ...+.+.|+|++||. |||+.-.       
T Consensus       103 ~~---------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 SA---------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             CS---------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             cC---------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            31               1357888865431        1222222     234567799999997 9998521       


Q ss_pred             -------e-eEEeecC-C------CCceeEEeccCCCCCCceEECCCCCEEEEEecCCc-hhhhhhhcChhHHHHHHhcc
Q 018705          211 -------K-RYWLKGD-R------AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ-TGVRAIQKCREKWELLDAYP  274 (351)
Q Consensus       211 -------~-~~~i~~~-~------~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~-~~~~~~~~~~~~~~~~~~~~  274 (351)
                             + .+++... +      ....+++..++. .|.++++|++|+||++....+. .-+..+..+           
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G-----------  234 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG-----------  234 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT-----------
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC-----------
Confidence                   1 2333311 0      012356664443 4889999999999999875421 000000000           


Q ss_pred             chhhcccCCCCCCceEEEEEECCCC--eEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          275 GLISLLLPMGSDAGARVVKVDGNDG--KIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       275 ~~~~~~~~~~~~~~~~v~~~~~~~g--~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ....|..  .....      +. .+  ..+..+ .+.   ....+.+...+|.+|++.+.+.+|.++.+...
T Consensus       235 ~nyGwP~--~~g~~------~~-~~~~~P~~~~-~~~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          235 DNYGWPE--AEGKG------GG-SGFHDPVAQW-STD---EASPSGIAYAEGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             CBCCTTT--CCSSC------CC-TTCCCCSEEE-CTT---TCCEEEEEEETTEEEEEESTTCSEEEEEEETT
T ss_pred             CEecCCc--ccCCC------CC-ccccCCcEec-CCC---CCCCcceEEEcCceeeccccCCEEEEEEecCC
Confidence            0000100  00000      00 01  011122 111   12466777889999999999999999998654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=5.7e-08  Score=92.07  Aligned_cols=129  Identities=10%  Similarity=-0.018  Sum_probs=84.8

Q ss_pred             CCCeEEEEEcC-----CEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeC----------CCCeEEEcC-CC-
Q 018705           62 SKGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN----------EKGLLKVTE-EG-  123 (351)
Q Consensus        62 ~~g~lyv~~~~-----g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~----------~~gl~~~~~-~g-  123 (351)
                      +...+|+....     +.|..+|..++++..-...+..|  ++++++|| .|||++.          .+.+..+|. ++ 
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            56789998763     68999999888876544555666  89999999 5999974          234777774 54 


Q ss_pred             -eEEecCC-------CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----cc
Q 018705          124 -VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FY  190 (351)
Q Consensus       124 -~~~l~~~-------~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----~~  190 (351)
                       ...+...       ...|.++++++|| .+|+++..                ..+.|..+|.+++++..-...    ..
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~  224 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHI  224 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceee
Confidence             4444221       1579999999999 69998742                124677777776655322211    12


Q ss_pred             ccce----EEEcCCCCEEEEEe
Q 018705          191 FANG----IALSKNEDFVVVCE  208 (351)
Q Consensus       191 ~~ng----i~~~~dg~~lyv~~  208 (351)
                      .|.|    +++++||+.+|+..
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEEC
T ss_pred             ccCCCcEEEEEcCCCCEEEEEC
Confidence            2334    56666666555544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.08  E-value=1e-08  Score=95.15  Aligned_cols=196  Identities=12%  Similarity=0.111  Sum_probs=110.5

Q ss_pred             cCCCceEEEeeC---CCeEEEEEc--------CCEEEEEEcCCC--e---EEEE-eec------CCccccceEEcCCCCE
Q 018705           51 VNHPEDVSVVVS---KGALYTATR--------DGWVKYFILHNE--T---LVNW-KHI------DSQSLLGLTTTKDGGV  107 (351)
Q Consensus        51 ~~~pe~i~~d~~---~g~lyv~~~--------~g~I~~~d~~~g--~---~~~~-~~~------~~~p~~gl~~d~~G~L  107 (351)
                      ..+|.+|+++|+   ++.+|+...        ..+|++++.+.+  +   .+.+ ...      ...+. +|+++++|.|
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~-~l~~~pdG~L  143 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGG-RLVFDGKGYL  143 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCC-CEEECSSSEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCc-cEEECCCCcE
Confidence            356789999975   799998753        247999876433  2   2222 111      12367 8999999999


Q ss_pred             EEEeCC--------------CCeEEEcCCC-e--------------EEecCCCCCcccEEEcc-CCcEEEEeCCCcc-C-
Q 018705          108 ILCDNE--------------KGLLKVTEEG-V--------------EAIVPDASFTNDVIAAS-DGTLYFTVASTKY-T-  155 (351)
Q Consensus       108 ~v~d~~--------------~gl~~~~~~g-~--------------~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~-~-  155 (351)
                      |++...              ..+++++++| +              ++++.....|.++++|+ +|+||+++....- . 
T Consensus       144 yv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~de  223 (353)
T 2g8s_A          144 FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDE  223 (353)
T ss_dssp             EEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEE
T ss_pred             EEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcE
Confidence            999643              2588888655 2              23333346799999999 7999999864210 0 


Q ss_pred             --C----cccccccccccC--CceEEEEeC-----CCCeEE--EeecCccccceEEEcC-------CCCEEEEEecce-e
Q 018705          156 --P----TDFYKDMAEGKP--YGQLRKYDP-----KLKETT--VLHEGFYFANGIALSK-------NEDFVVVCESWK-R  212 (351)
Q Consensus       156 --~----~~~~~~~~~~~~--~g~l~~~d~-----~~~~~~--~~~~~~~~~ngi~~~~-------dg~~lyv~~~~~-~  212 (351)
                        .    ..+-....++..  .+.  .+..     ..+...  ........|.|+++..       +| .+|+++... +
T Consensus       224 i~~i~~G~nyGwp~~~~~~~~~~~--~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~  300 (353)
T 2g8s_A          224 INIPQKGKNYGWPLATWGINYSGF--KIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKD  300 (353)
T ss_dssp             EECCCTTCBCCTTTBCSSBCTTSS--CCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT-EEEEEETTTTE
T ss_pred             EeEeccCCcCCCCCccCCCCCCCC--ccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC-cEEEEEccCCE
Confidence              0    000000000000  000  0000     000000  0011123688899874       35 499999766 4


Q ss_pred             E---EeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          213 Y---WLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       213 ~---~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +   .+.+.+....+.+.....+.|.++++++||.||+++.
T Consensus       301 v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          301 VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             EEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            3   3332111111223323345689999999999999854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.07  E-value=6.8e-08  Score=91.38  Aligned_cols=178  Identities=14%  Similarity=0.061  Sum_probs=116.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCC---EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcC-CC-
Q 018705           53 HPEDVSVVVSKGALYTATRDG---WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g---~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~-~g-  123 (351)
                      ...+++++|++..++.+..++   .|+.+|..+++.+.+........ .++++++|+ |+++....   .++.++. ++ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            456889998777777666553   89999998888776655455566 899999997 44343322   3777774 56 


Q ss_pred             eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      .+.+.........++++|||+ |+++...               .....|+.+|..+++.+.+.........++++|||+
T Consensus       259 ~~~l~~~~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          259 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSS
T ss_pred             EEeCcCCCCcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCC
Confidence            655544435677899999996 5555432               012379999988887665544444566799999999


Q ss_pred             EEEEEecc---eeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705          203 FVVVCESW---KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       203 ~lyv~~~~---~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      .|+++...   ..+++-+...++...+...  .....++++++|+..+.
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIY  370 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEE
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEecCC--CCcCCeEEcCCCCEEEE
Confidence            88886653   2444433333444333321  23456789999984443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.04  E-value=4.3e-07  Score=84.93  Aligned_cols=232  Identities=13%  Similarity=0.118  Sum_probs=144.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP  129 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~  129 (351)
                      .+++++|++..+.++..||.|..||..+++.... ........ .+++.++|+.+++....+.++++  .++  ...+..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            4789998777888999999999999987766433 33334456 89999999877766666777776  355  333322


Q ss_pred             CCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--------cCccccceEEEcCC
Q 018705          130 DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--------EGFYFANGIALSKN  200 (351)
Q Consensus       130 ~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--------~~~~~~ngi~~~~d  200 (351)
                      . ..+..+++.+ +|.++++.+.                 ++.|..||..+++.....        ........++++++
T Consensus       206 ~-~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          206 E-DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             S-SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             C-CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            2 4677888988 7877776543                 467888888776643322        11234567999999


Q ss_pred             CCEEEEEecce--eEEe-ecCC---------CCcee-EEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705          201 EDFVVVCESWK--RYWL-KGDR---------AGILD-AFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i-~~~~---------~~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      ++.|+.+..++  ++|- ....         .+... .+. ........++++++|.+.++...                
T Consensus       268 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~----------------  330 (393)
T 1erj_A          268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSK----------------  330 (393)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEET----------------
T ss_pred             CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeC----------------
Confidence            99777776665  5552 1110         01111 111 11122334667777776555432                


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-------CCEEEEEecCCCeEEEEe
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-------DGNLYLASLQSNFIGILP  340 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-------~g~L~ig~~~~~~i~~~~  340 (351)
                                          .+.|..+|..+++.+..+..+.+    .+.++...       ++.++++......|..++
T Consensus       331 --------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          331 --------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             --------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             --------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence                                24677888867888888876543    35555543       356666655567788777


Q ss_pred             CCCCCC
Q 018705          341 LDGPEP  346 (351)
Q Consensus       341 ~~~~~~  346 (351)
                      +...+|
T Consensus       387 ~~~~~p  392 (393)
T 1erj_A          387 YKKIAP  392 (393)
T ss_dssp             EEEC--
T ss_pred             ccccCC
Confidence            766554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.04  E-value=1.7e-07  Score=86.79  Aligned_cols=180  Identities=10%  Similarity=0.096  Sum_probs=99.7

Q ss_pred             eEEEEEcC--CEEEE--EEcCCCeEEEEee----cCCccccceEEcCCCC-EEEEeCCCCeEEEc-C-CC-eEEecC--C
Q 018705           65 ALYTATRD--GWVKY--FILHNETLVNWKH----IDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-E-EG-VEAIVP--D  130 (351)
Q Consensus        65 ~lyv~~~~--g~I~~--~d~~~g~~~~~~~----~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~-~-~g-~~~l~~--~  130 (351)
                      .+|+++..  +.|+.  +|..+|+++....    ....|. .++++++|+ ||+++.. .+..++ . +| ...+..  .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            57888753  46765  4566787765533    123688 999999997 7877765 555555 3 66 433221  1


Q ss_pred             CCCcccEEEccCCc-EEE-EeCCCccCCcccccccccccCCceEEEEeCC-CCeEEE-ee----cCccccceEEEcCCCC
Q 018705          131 ASFTNDVIAASDGT-LYF-TVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTV-LH----EGFYFANGIALSKNED  202 (351)
Q Consensus       131 ~~~~n~l~~d~dG~-ly~-t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~-~~----~~~~~~ngi~~~~dg~  202 (351)
                      ...|.+++++|||+ +|+ +....++.  .+....+.  ..|.+..|+.+ .++... +.    .....+++++++|||+
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~--~~~~~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYA--VYANPFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCC--EEEEEESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcce--eccceeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            13488899999997 343 22100000  00000000  13445555433 244432 21    1346789999999999


Q ss_pred             EEEEEecce-eEEeecCC-CCceeEEec-cC---CCCCCceEECCCCC-EEEEEe
Q 018705          203 FVVVCESWK-RYWLKGDR-AGILDAFIE-NL---PGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       203 ~lyv~~~~~-~~~i~~~~-~~~~~~~~~-~~---~g~pd~i~~d~~G~-lwva~~  250 (351)
                      ++|+++... ++++-+.. .++...... ..   ...|.+++++++|+ +|++..
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            999987644 33222111 233322111 11   23578899999996 677653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.02  E-value=4.1e-07  Score=85.64  Aligned_cols=233  Identities=10%  Similarity=0.124  Sum_probs=144.7

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~  126 (351)
                      ....+++++|++..+.++..||.|..||..+++.. .+........ .++++++|+++++....+.++++ . ++  ...
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            34458899987788889999999999998887653 3333334456 89999999877766566666665 2 33  444


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      +......+.++++.|+|...++.+.                 ++.|..||..+++.. .+.......+.++++++++.+.
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~  250 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA  250 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence            4433467889999999987777654                 568999998777643 3333334567789999999666


Q ss_pred             EEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCC--------------------CCEEEEEecCCchhhhhhhc
Q 018705          206 VCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPD--------------------GSFWIGLIKMNQTGVRAIQK  262 (351)
Q Consensus       206 v~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~--------------------G~lwva~~~~~~~~~~~~~~  262 (351)
                      .+..++  ++|-..  .++. ..+. ........+.+.++                    |.+.++..            
T Consensus       251 s~s~D~~v~vwd~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs------------  315 (410)
T 1vyh_C          251 SCSNDQTVRVWVVA--TKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS------------  315 (410)
T ss_dssp             EEETTSCEEEEETT--TCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE------------
T ss_pred             EEcCCCeEEEEECC--CCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe------------
Confidence            666665  666321  1221 1111 11111223344443                    33333322            


Q ss_pred             ChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeC
Q 018705          263 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~  341 (351)
                                              ..+.|..+|..+++.+..+..+.+    .++++..+ ++++.++....+.|..+++
T Consensus       316 ------------------------~D~~i~iwd~~~~~~~~~~~~h~~----~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          316 ------------------------RDKTIKMWDVSTGMCLMTLVGHDN----WVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             ------------------------TTSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             ------------------------CCCeEEEEECCCCceEEEEECCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence                                    234577778757888877765443    46666654 3443333344667888887


Q ss_pred             CCCC
Q 018705          342 DGPE  345 (351)
Q Consensus       342 ~~~~  345 (351)
                      .+..
T Consensus       368 ~~~~  371 (410)
T 1vyh_C          368 KNKR  371 (410)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            6543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.02  E-value=2.1e-07  Score=84.51  Aligned_cols=144  Identities=8%  Similarity=-0.046  Sum_probs=88.9

Q ss_pred             eEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecCC--ccccceEEcCCCC-EEEEeCCC-CeEEEcC-CC--eEEe
Q 018705           56 DVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGG-VILCDNEK-GLLKVTE-EG--VEAI  127 (351)
Q Consensus        56 ~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~~--~p~~gl~~d~~G~-L~v~d~~~-gl~~~~~-~g--~~~l  127 (351)
                      ++++. .++.+|+ +..++.|+.+|..+++.........  .|. +++++++|+ +|++.... .++.++. ++  ...+
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            45566 4666665 5578999999998887654333333  688 999999996 78887554 4666664 55  3333


Q ss_pred             cCC------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE---EeecCccccceEEE
Q 018705          128 VPD------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFANGIAL  197 (351)
Q Consensus       128 ~~~------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~~~~~ngi~~  197 (351)
                      ...      ...++++++++||+ +|++.........     .+ ....+.|+.||.++++..   ........+.++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~-----~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND-----HY-VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSS-----CE-EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             EcccccccccccccceEECCCCCEEEEEccccccccc-----cc-ccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            221      13489999999995 6766532000000     00 011357999998764321   11122235778889


Q ss_pred             cCCCCEEEEEe
Q 018705          198 SKNEDFVVVCE  208 (351)
Q Consensus       198 ~~dg~~lyv~~  208 (351)
                      ++||+ +|++.
T Consensus       156 s~dg~-l~~~~  165 (349)
T 1jmx_B          156 ADDGS-LYVAG  165 (349)
T ss_dssp             CTTSC-EEEES
T ss_pred             CCCCc-EEEcc
Confidence            99999 88854

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.01  E-value=9.9e-07  Score=82.29  Aligned_cols=242  Identities=12%  Similarity=0.043  Sum_probs=137.8

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEc----------CCEEEEEEcCCCeEEEEeec--------CCccccceEEcCCC-
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHI--------DSQSLLGLTTTKDG-  105 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~----------~g~I~~~d~~~g~~~~~~~~--------~~~p~~gl~~d~~G-  105 (351)
                      .+..|  ..| +++++|++..+|+...          ++.|..+|..+.+.......        ...|. +++++++| 
T Consensus        62 ~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~  137 (373)
T 2mad_H           62 HVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNA  137 (373)
T ss_pred             EecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCC
Confidence            45555  468 9999998899999862          56789999877655332222        24588 99999999 


Q ss_pred             CEEEEeCC--CCeEEEcCCC---eEE-ecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC
Q 018705          106 GVILCDNE--KGLLKVTEEG---VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (351)
Q Consensus       106 ~L~v~d~~--~gl~~~~~~g---~~~-l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  178 (351)
                      .||+++..  +.+..++ +.   ... +.    .+.++.+.++| +.|++...                 +|.+..+|. 
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~-----------------dg~~~~vd~-  194 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCA-----------------QGGLAKTDH-  194 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEEEEeCCCceEEEEcC-----------------CCCEEEEEC-
Confidence            58888743  4577777 44   222 21    23335555555 56666543                 467778877 


Q ss_pred             CCeEEEeec-----Ccccc--ceEEEcCCCCEEEEEeccee-EEeecCCCCcee---EE---ec---cCCCCCCc---eE
Q 018705          179 LKETTVLHE-----GFYFA--NGIALSKNEDFVVVCESWKR-YWLKGDRAGILD---AF---IE---NLPGGPDN---IN  238 (351)
Q Consensus       179 ~~~~~~~~~-----~~~~~--ngi~~~~dg~~lyv~~~~~~-~~i~~~~~~~~~---~~---~~---~~~g~pd~---i~  238 (351)
                      +++......     ....|  ....+++++..+|+....+. +.++-. .+..+   .+   ..   .....|++   +.
T Consensus       195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS-AAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc-CCcceEeeeeeecCCcccccceecCceEeEE
Confidence            555432111     00111  12344555554555443332 222211 11111   11   00   00113555   78


Q ss_pred             ECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCccccee
Q 018705          239 LAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT  317 (351)
Q Consensus       239 ~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~  317 (351)
                      ++++| ++|++........                           .....+.|..||.++++++..+..+.     ...
T Consensus       274 ~s~d~~~lyV~~~~~~~~~---------------------------~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~  321 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWK---------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVD  321 (373)
T ss_pred             ECCCCCEEEEEeccCCccc---------------------------ccCCCCeEEEEECCCCEEEEEEECCC-----CcC
Confidence            88887 5999865310000                           00112468999997788888886432     233


Q ss_pred             EEE--EECC-EEEEEecCCCeEEEEeCCCCCC
Q 018705          318 SAA--EFDG-NLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       318 ~~~--~~~g-~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                      ++.  .++. .||+++...+.|.++++.+.+.
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence            444  3455 5888777789999999877643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.01  E-value=1.2e-06  Score=78.73  Aligned_cols=233  Identities=9%  Similarity=0.078  Sum_probs=140.4

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~  126 (351)
                      ..-.+++++|++..+.++..||.|..||..+++.. .+........ .+++.++|+++++....+.+++.  .++  ...
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            44578999988888999999999999999777543 3333333345 88899999877766666777776  355  455


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEE-eecCccccceEEEcC-CCCE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTV-LHEGFYFANGIALSK-NEDF  203 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~-~~~~~~~~ngi~~~~-dg~~  203 (351)
                      +......++++++.|++.+.++.+.                 ++.|..||..++ .... +.........++++| ++..
T Consensus        93 ~~~h~~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           93 FEAHPDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             EeCCCCcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            5444467899999999987777654                 567888887655 3322 223334567899998 5666


Q ss_pred             EEEEecce--eEEeecCCCCceeEEeccCCCCCCceEEC--CCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          204 VVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLA--PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d--~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      +..+..++  ++|-......... +..........+.+.  +++.+.++...                            
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~----------------------------  206 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFT-LTTGQERGVNYVDYYPLPDKPYMITASD----------------------------  206 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEE-EECCCTTCEEEEEECCSTTCCEEEEEET----------------------------
T ss_pred             EEEEeCCCeEEEEECCCCCccce-eccCCcCcEEEEEEEEcCCCCEEEEEcC----------------------------
Confidence            66666555  5553211111111 111111111123333  35665555432                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC-CEEEEEecCCCeEEEEeCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~ig~~~~~~i~~~~~~~  343 (351)
                              .+.|..+|..+++.+..+..+.+    .++.+..+. +.+.++....+.|..+++.+
T Consensus       207 --------D~~i~iWd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          207 --------DLTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             --------TSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             --------CCeEEEEeCCCCccceeeCCCCC----CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                    23566677756777777765443    355555542 33344433356677777654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.01  E-value=1.8e-07  Score=85.71  Aligned_cols=232  Identities=9%  Similarity=-0.013  Sum_probs=141.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe---EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET---LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      .-.++++++++..++++..+|.|..|+..+++   ...+........ .++++++|+++++....+.+++.  .++  ..
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            45689999777788888899999999987775   334433445566 89999999876655455555554  244  22


Q ss_pred             Ee--cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe----EEEeecC-ccccceEEEc
Q 018705          126 AI--VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHEG-FYFANGIALS  198 (351)
Q Consensus       126 ~l--~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~~~~~~~-~~~~ngi~~~  198 (351)
                      .+  ......+.+++++++|..+++...                 ++.+..||..+++    ....... ......++++
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            22  222267889999999976665543                 3456666544433    2222222 3456789999


Q ss_pred             CCCCEEEEEecce--eEEeec----------------CCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhh
Q 018705          199 KNEDFVVVCESWK--RYWLKG----------------DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAI  260 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i~~----------------~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~  260 (351)
                      ++++.++.+..++  ++|-..                ...++.........+....++++++|++.++...         
T Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------  222 (372)
T 1k8k_C          152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH---------  222 (372)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET---------
T ss_pred             CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC---------
Confidence            9999777776665  444210                0111211111112223456788899976665432         


Q ss_pred             hcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEE
Q 018705          261 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGIL  339 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~  339 (351)
                                                 .+.|..+|..+++.+..+..+..    .++++... ++++.+++ ..+.|..+
T Consensus       223 ---------------------------d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          223 ---------------------------DSTVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVLF  270 (372)
T ss_dssp             ---------------------------TTEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             ---------------------------CCEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEEE
Confidence                                       13577777756777777765432    35566544 56665555 57778888


Q ss_pred             eCCC
Q 018705          340 PLDG  343 (351)
Q Consensus       340 ~~~~  343 (351)
                      +++.
T Consensus       271 ~~~~  274 (372)
T 1k8k_C          271 TYDS  274 (372)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            7765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.01  E-value=1.6e-06  Score=78.79  Aligned_cols=179  Identities=12%  Similarity=0.086  Sum_probs=115.0

Q ss_pred             CCCceEEEeeC----CCeEEEEEcCCEEEEEEcCCCeEEEE---eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CC
Q 018705           52 NHPEDVSVVVS----KGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EE  122 (351)
Q Consensus        52 ~~pe~i~~d~~----~g~lyv~~~~g~I~~~d~~~g~~~~~---~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~  122 (351)
                      ..-.++++.++    +..+.++..|+.|..|+..+++....   ........ .+++.+++.+.++....+.+++.  .+
T Consensus        33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd~~~  111 (321)
T 3ow8_A           33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWDLEN  111 (321)
T ss_dssp             SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            34567888643    34688899999998888766654322   12223345 78888999887776667777776  35


Q ss_pred             C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcC
Q 018705          123 G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSK  199 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~  199 (351)
                      +  ...+......+..++++|+|...++.+.                 .|.+..|+..+++.... .........++++|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp  174 (321)
T 3ow8_A          112 GKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSP  174 (321)
T ss_dssp             TEEEEEEECCTTCCCCEEECTTSSEEEEECT-----------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECT
T ss_pred             CCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----------------CCcEEEEEcCCCceeEEecCCCceEEEEEECC
Confidence            5  4444443356778999999987776654                 46788888776655432 33334567899999


Q ss_pred             CCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          200 NEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       200 dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++.|..+..++  ++|  +...++..............++++++|++.++..
T Consensus       175 dg~~lasg~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIF--DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             TSSEEEEEETTSCEEEE--ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEE--ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence            999777777666  444  2222332111112223346789999998777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=1.4e-07  Score=82.91  Aligned_cols=187  Identities=13%  Similarity=0.124  Sum_probs=119.8

Q ss_pred             ceEEcCCCCEEEEeCCCC-eEEEcC-CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE
Q 018705           98 GLTTTKDGGVILCDNEKG-LLKVTE-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                      ||.++ ++.||+++...| +.+++. +|  ...+.....+..+++++. ++||+.+..                 .+.++
T Consensus        59 GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~-----------------~~~v~  119 (268)
T 3nok_A           59 GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWT-----------------EGLLF  119 (268)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESS-----------------SCEEE
T ss_pred             eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEcc-----------------CCEEE
Confidence            89987 579999997754 555564 66  444422224455677653 489998764                 46899


Q ss_pred             EEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCcee--EEecc--CC-CCCCceEECCCCCEEEE
Q 018705          174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILD--AFIEN--LP-GGPDNINLAPDGSFWIG  248 (351)
Q Consensus       174 ~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~--~~~~~--~~-g~pd~i~~d~~G~lwva  248 (351)
                      .||+++.+...-..-  .+.|..+.+|++.||+++..+++++-++...+..  +-+..  .+ ...+.+.+. +|.||+.
T Consensus       120 V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan  196 (268)
T 3nok_A          120 TWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN  196 (268)
T ss_dssp             EEETTTTEEEEEEEC--SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEECCcCcEEEEEeC--CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence            999998776443322  2344555567888999985446555444332221  11111  11 123445554 7899987


Q ss_pred             EecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC---------CCCcccceeEE
Q 018705          249 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP---------DATYISFVTSA  319 (351)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~---------~g~~~~~~~~~  319 (351)
                      ....                                    ..|.++||++|+++..+.-.         .....+...++
T Consensus       197 vw~s------------------------------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI  240 (268)
T 3nok_A          197 IWHS------------------------------------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI  240 (268)
T ss_dssp             ETTC------------------------------------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred             ECCC------------------------------------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE
Confidence            6431                                    26999999999999988642         11112355677


Q ss_pred             EEE--CCEEEEEecCCCeEEEEeCC
Q 018705          320 AEF--DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       320 ~~~--~g~L~ig~~~~~~i~~~~~~  342 (351)
                      +.+  +++||++....+.++.++++
T Consensus       241 A~dp~~~rlfVTGK~Wp~~~ev~~~  265 (268)
T 3nok_A          241 AVEPGSGRIFMTGKLWPRLFEVRLD  265 (268)
T ss_dssp             EECTTTCCEEEEETTCSEEEEEEEE
T ss_pred             EEcCCCCEEEEeCCCCCceEEEEEE
Confidence            765  57999999999999998874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.00  E-value=5e-07  Score=88.95  Aligned_cols=225  Identities=11%  Similarity=-0.016  Sum_probs=142.7

Q ss_pred             CCeEEEEEc-CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC---CC--eEEecCCCCCcc
Q 018705           63 KGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG--VEAIVPDASFTN  135 (351)
Q Consensus        63 ~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~---~g--~~~l~~~~~~~n  135 (351)
                      ++.+|+... ++.|..+|..++++......+..|+ +++++++|+ +|+++....+..++.   ++  +..+..+ ..|.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~  243 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR  243 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence            567887664 7899999998887755445566789 999999995 788886666888875   33  3334333 5799


Q ss_pred             cEEEc----cCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc------------cccceEEEc
Q 018705          136 DVIAA----SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF------------YFANGIALS  198 (351)
Q Consensus       136 ~l~~d----~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~------------~~~ngi~~~  198 (351)
                      +++++    ||| .+|+++..                 .+.+..+|..+.+........            ....+|..+
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s  306 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  306 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             eeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence            99999    698 58888753                 467889998877654322111            123478888


Q ss_pred             CCCCEEEEEecce-eEEeecCCCC-ceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccc
Q 018705          199 KNEDFVVVCESWK-RYWLKGDRAG-ILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPG  275 (351)
Q Consensus       199 ~dg~~lyv~~~~~-~~~i~~~~~~-~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      +++..++++-... .+++.+.... ...+..-....++.++.+|++|+ +|++....                       
T Consensus       307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s-----------------------  363 (567)
T 1qks_A          307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR-----------------------  363 (567)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG-----------------------
T ss_pred             CCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC-----------------------
Confidence            8877666655333 6666542211 11111101223567889999998 55665331                       


Q ss_pred             hhhcccCCCCCCceEEEEEECCCCeEEEEEEC-CCCCcccc-eeEEEE-ECCEEEEEe-cCCCeEEEEeCCC
Q 018705          276 LISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISF-VTSAAE-FDGNLYLAS-LQSNFIGILPLDG  343 (351)
Q Consensus       276 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~-~~~~~~-~~g~L~ig~-~~~~~i~~~~~~~  343 (351)
                                   ..|..+|.++++++..+.. .. .+... -..+.. .++.+|+.+ ...+.|.+++..+
T Consensus       364 -------------n~V~ViD~~t~kl~~~i~vgg~-~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          364 -------------NKLVVIDTKEGKLVAIEDTGGQ-TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             -------------TEEEEEETTTTEEEEEEECSSS-SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------CeEEEEECCCCcEEEEEeccCc-CCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                         2577889877888777653 21 11111 112222 247899865 4457899998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.97  E-value=6e-07  Score=88.38  Aligned_cols=242  Identities=16%  Similarity=0.149  Sum_probs=147.0

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcC--CCeEEEEeecCCccccceEEc----CCC-CEEEEeCCCC-e
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH--NETLVNWKHIDSQSLLGLTTT----KDG-GVILCDNEKG-L  116 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~--~g~~~~~~~~~~~p~~gl~~d----~~G-~L~v~d~~~g-l  116 (351)
                      .+..+  ..|++++++|++..+|++..++.|..+|..  +++...-...+..|. +++++    ++| .+|+++...+ +
T Consensus       192 ~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v  268 (567)
T 1qks_A          192 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  268 (567)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeE
Confidence            44444  468899999888899999999999999985  555543334566799 99999    588 5888876644 4


Q ss_pred             EEEcC-CC--eEEecCCC-----------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCe
Q 018705          117 LKVTE-EG--VEAIVPDA-----------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE  181 (351)
Q Consensus       117 ~~~~~-~g--~~~l~~~~-----------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  181 (351)
                      ..++. +.  ++.+....           ..+..+..++++. ++++...                 .|.|+.+|..+.+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-----------------~g~v~~vd~~~~~  331 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----------------TGKILLVDYTDLN  331 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEETTCSS
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-----------------CCeEEEEecCCCc
Confidence            44453 43  44433210           1345677777764 4444322                 5789999876432


Q ss_pred             EEE--eecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEec---cCCCCC-CceE-ECCC-CCEEEEEecC
Q 018705          182 TTV--LHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIE---NLPGGP-DNIN-LAPD-GSFWIGLIKM  252 (351)
Q Consensus       182 ~~~--~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~---~~~g~p-d~i~-~d~~-G~lwva~~~~  252 (351)
                      ...  ......++.++.+++||+++|++.... ++.+-+...++.....+   ..| .| .|.. ++++ |.+|++...+
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-HPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-CCTTCEEEEETTTEEEEEEEBSS
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC-CCccceeeECCCCCcEEEeCCCC
Confidence            111  123345788999999999999987554 54444433344322221   112 22 3554 4666 6799876431


Q ss_pred             CchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC-------CeEEEEEECCCCCcccceeEEEEECCE
Q 018705          253 NQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND-------GKIIRDFNDPDATYISFVTSAAEFDGN  325 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------g~~~~~~~~~~g~~~~~~~~~~~~~g~  325 (351)
                                                         .+.|..||...       -+++..+....+.  ......-.++.+
T Consensus       411 -----------------------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~  453 (567)
T 1qks_A          411 -----------------------------------DDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQY  453 (567)
T ss_dssp             -----------------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSE
T ss_pred             -----------------------------------CCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCCe
Confidence                                               12467777622       4677777653211  111111123468


Q ss_pred             EEEEecC------CCeEEEEeCCCC
Q 018705          326 LYLASLQ------SNFIGILPLDGP  344 (351)
Q Consensus       326 L~ig~~~------~~~i~~~~~~~~  344 (351)
                      ||+.+..      ++.|.+|++.+.
T Consensus       454 l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          454 LYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEecCCCCCcccCceEEEEECCcc
Confidence            9998843      348999998765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.97  E-value=6.5e-07  Score=82.91  Aligned_cols=237  Identities=11%  Similarity=0.052  Sum_probs=143.7

Q ss_pred             CCCceEEEeeC----C---CeEEEEEcCCEEEEEEcCCCe------EEEEeec-----CCccccceEEc----CCCCE-E
Q 018705           52 NHPEDVSVVVS----K---GALYTATRDGWVKYFILHNET------LVNWKHI-----DSQSLLGLTTT----KDGGV-I  108 (351)
Q Consensus        52 ~~pe~i~~d~~----~---g~lyv~~~~g~I~~~d~~~g~------~~~~~~~-----~~~p~~gl~~d----~~G~L-~  108 (351)
                      ....++++.++    +   ..++++..+|.|..|+..+++      ...+...     ..... .+++.    ++++. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34568899976    5   678888899999999876665      4444333     24556 89999    88976 5


Q ss_pred             EEeCCCCeEEE-c-CC------C--eE-----EecC-------CCCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705          109 LCDNEKGLLKV-T-EE------G--VE-----AIVP-------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus       109 v~d~~~gl~~~-~-~~------g--~~-----~l~~-------~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      ++....+.+++ + ..      +  ..     .+..       ....+.+++++++| ++++...               
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---------------  205 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---------------  205 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---------------
Confidence            54434444444 3 24      3  33     4421       22678999999999 6665543               


Q ss_pred             cCCceEEEEeCCCCeEEEeecC-------ccccceEEEcCCCCEEEEEecc---eeEEeecCCCCc-eeEEecc------
Q 018705          167 KPYGQLRKYDPKLKETTVLHEG-------FYFANGIALSKNEDFVVVCESW---KRYWLKGDRAGI-LDAFIEN------  229 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~~~-------~~~~ngi~~~~dg~~lyv~~~~---~~~~i~~~~~~~-~~~~~~~------  229 (351)
                        +|.|..||..+++.......       ......++++++++.++++...   +.+.+-+...++ ...+...      
T Consensus       206 --dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          206 --NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             --CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence              57899999887765444433       4456789999999988777766   522222211222 2222210      


Q ss_pred             ------CCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEE
Q 018705          230 ------LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR  303 (351)
Q Consensus       230 ------~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~  303 (351)
                            ..+....++++++|++.++...                                    .+.|..+|..+++.+.
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGW------------------------------------DGKLRFWDVKTKERIT  327 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEET------------------------------------TSEEEEEETTTTEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeC------------------------------------CCeEEEEEcCCCceeE
Confidence                  2223456788899987666443                                    2457777876788888


Q ss_pred             EEE------CC-----CCC------cccceeEEEEEC-C----------EEEEEecCCCeEEEEeCCC
Q 018705          304 DFN------DP-----DAT------YISFVTSAAEFD-G----------NLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       304 ~~~------~~-----~g~------~~~~~~~~~~~~-g----------~L~ig~~~~~~i~~~~~~~  343 (351)
                      .+.      ..     .|.      ....++++.... +          ++++.....+.|..+++++
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            877      22     000      023567777654 3          4555444577888887654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.96  E-value=7.3e-07  Score=82.73  Aligned_cols=221  Identities=11%  Similarity=0.025  Sum_probs=141.9

Q ss_pred             CCCceEEEeeCCCeEEEEEcC------CEEEEEEcC--------CCeE-EEEee--cC---CccccceEEcCCCCEEEEe
Q 018705           52 NHPEDVSVVVSKGALYTATRD------GWVKYFILH--------NETL-VNWKH--ID---SQSLLGLTTTKDGGVILCD  111 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~------g~I~~~d~~--------~g~~-~~~~~--~~---~~p~~gl~~d~~G~L~v~d  111 (351)
                      ..|-++++|..++++|++...      -.+..++..        ++++ +.|..  .+   ..++ ++.+|+.|+|||.|
T Consensus        26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLD  104 (381)
T 3q6k_A           26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVD  104 (381)
T ss_dssp             CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEE
T ss_pred             cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEe
Confidence            468899994257899998753      135666642        2355 66532  11   2467 89999999999999


Q ss_pred             CCC----------------CeEEEc-C-C--C-eEEecC--C----CCCcccEEEc-c-------CCcEEEEeCCCccCC
Q 018705          112 NEK----------------GLLKVT-E-E--G-VEAIVP--D----ASFTNDVIAA-S-------DGTLYFTVASTKYTP  156 (351)
Q Consensus       112 ~~~----------------gl~~~~-~-~--g-~~~l~~--~----~~~~n~l~~d-~-------dG~ly~t~~~~~~~~  156 (351)
                      .+.                .|+.++ . +  . ++++.-  .    ..+.+++++| .       ++.+|+||..     
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~-----  179 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL-----  179 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT-----
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC-----
Confidence            762                256667 3 5  5 444321  1    1678999999 2       4579999975     


Q ss_pred             cccccccccccCCceEEEEeCCCCeEEEeec--------------C-----ccccceEEEcCC----CCEEEEEecce--
Q 018705          157 TDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--------------G-----FYFANGIALSKN----EDFVVVCESWK--  211 (351)
Q Consensus       157 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------------~-----~~~~ngi~~~~d----g~~lyv~~~~~--  211 (351)
                                  .++|..||.++++..++..              +     ....+||++||+    ++.||++...+  
T Consensus       180 ------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          180 ------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             ------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             ------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence                        3467777777666544431              1     125678999998    78999988766  


Q ss_pred             eEEee-----cCC-CCceeEEeccCCCCCCc--eEEC-CCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          212 RYWLK-----GDR-AGILDAFIENLPGGPDN--INLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       212 ~~~i~-----~~~-~~~~~~~~~~~~g~pd~--i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      -|.+.     +.. ...++.+.+ .+...++  +++| ++|+||++...                               
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~-------------------------------  295 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEAN-------------------------------  295 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESS-------------------------------
T ss_pred             EEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEecc-------------------------------
Confidence            46654     221 223343332 2212454  5776 88999999754                               


Q ss_pred             CCCCCceEEEEEECCCC------eEEEEEECCCCCcccceeEEEEE-CCEEEEEec
Q 018705          283 MGSDAGARVVKVDGNDG------KIIRDFNDPDATYISFVTSAAEF-DGNLYLASL  331 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~  331 (351)
                           ...|.++++ ++      .....++++ .  .-++..+..+ +|+||+.+-
T Consensus       296 -----~~aI~~w~~-~~~~~~~~n~~~l~~d~-~--l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          296 -----TKQVSCWNT-QKMPLRMKNTDVVYTSS-R--FVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             -----SSEEEEEET-TSCSBCGGGEEEEEECT-T--CCSEEEEEECTTSCEEEEEC
T ss_pred             -----CCeEEEEeC-CCCccccCceEEEEECC-C--ccccCeEEECCCCeEEEEEC
Confidence                 247999999 76      223344665 3  3467777764 789999874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.94  E-value=4.8e-07  Score=79.63  Aligned_cols=196  Identities=12%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             CCccccceEEcCCC-CEEE-EeCCCCeEEEcCCC--eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705           92 DSQSLLGLTTTKDG-GVIL-CDNEKGLLKVTEEG--VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus        92 ~~~p~~gl~~d~~G-~L~v-~d~~~gl~~~~~~g--~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      ..++. ||++++++ .||+ .+....+++++.+|  .+.+. .+...+.+|+++++|.+|+++..               
T Consensus        26 ~~~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~---------------   89 (255)
T 3qqz_A           26 TNNIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDER---------------   89 (255)
T ss_dssp             CSCEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETT---------------
T ss_pred             ccCcc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECC---------------
Confidence            35677 99999864 7997 45555799999767  44443 22367899999999999998754               


Q ss_pred             cCCceEEEEeCCC-CeEE---EeecCc-ccc-----ceEEEcCCCCEEEEEecce---eEEeecC-CCCceeEEec----
Q 018705          167 KPYGQLRKYDPKL-KETT---VLHEGF-YFA-----NGIALSKNEDFVVVCESWK---RYWLKGD-RAGILDAFIE----  228 (351)
Q Consensus       167 ~~~g~l~~~d~~~-~~~~---~~~~~~-~~~-----ngi~~~~dg~~lyv~~~~~---~~~i~~~-~~~~~~~~~~----  228 (351)
                        .++++.|+... ++..   ...-.+ ..+     .||++++++++||++....   .|.+.+. ......+..+    
T Consensus        90 --~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~  167 (255)
T 3qqz_A           90 --DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ  167 (255)
T ss_dssp             --TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred             --CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence              34677664322 2221   111111 223     6999999998899966543   3444431 1112232211    


Q ss_pred             -cC-CCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705          229 -NL-PGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF  305 (351)
Q Consensus       229 -~~-~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~  305 (351)
                       .. -.-+.++++|+. |++|+-....                                    ..++.+|. +|+++..+
T Consensus       168 ~~~~~~d~S~l~~dp~tg~lliLS~~s------------------------------------~~L~~~d~-~g~~~~~~  210 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQKNTLLVLSHES------------------------------------RALQEVTL-VGEVIGEM  210 (255)
T ss_dssp             HTCCSSCCCEEEEETTTTEEEEEETTT------------------------------------TEEEEECT-TCCEEEEE
T ss_pred             cccccCCceeEEEcCCCCeEEEEECCC------------------------------------CeEEEEcC-CCCEEEEE
Confidence             00 112578899875 5688875432                                    36999999 99987777


Q ss_pred             ECCCCC-----cccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          306 NDPDAT-----YISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       306 ~~~~g~-----~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      .-..|.     ...+.-+++.+ +|+|||.+= .|.+++|+..+
T Consensus       211 ~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          211 SLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             ECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC--
T ss_pred             EcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEecC
Confidence            644331     23466777765 589999975 68999997543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.94  E-value=5.3e-07  Score=85.19  Aligned_cols=160  Identities=11%  Similarity=0.056  Sum_probs=101.3

Q ss_pred             CEEEEEEcCCCeEEEEeecCCccccceEEcCCCCE-EEEeCCC---CeEEEcC-CC-eEEecCCCCCcccEEEccCCc-E
Q 018705           73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-L  145 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~d~~~---gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-l  145 (351)
                      +.|+.+|.+++..+.+........ .+++.++|+. ..+....   .++.++. +| .+.+......+..++++|||. |
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence            689999986655666555555666 8999999974 3343332   4555564 56 555544335678899999996 6


Q ss_pred             EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc-e--eEEeecCCCCc
Q 018705          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-K--RYWLKGDRAGI  222 (351)
Q Consensus       146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~-~--~~~i~~~~~~~  222 (351)
                      +++.+.               .....|+.||..+++.+.+.........++++|||+.|+++... +  ++++-+...++
T Consensus       238 a~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          238 AFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            656542               11346999999888876665544456789999999988876643 3  55554333333


Q ss_pred             eeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          223 LDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       223 ~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ...+.. .......++++++|++.+..
T Consensus       303 ~~~l~~-~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          303 PQRITW-EGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             CEECCC-SSSEEEEEEECTTSSEEEEE
T ss_pred             EEEEec-CCCcccCeEECCCCCEEEEE
Confidence            333221 11223457889999855443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.94  E-value=9.8e-07  Score=81.98  Aligned_cols=230  Identities=10%  Similarity=0.013  Sum_probs=138.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEE-cC-CC--eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG--VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~-~~-~g--~~~l~  128 (351)
                      ...++++++++..++++..+|.|..|+........+........ .+++.++|+.+++....+.+++ +. ++  ...+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            45688999877788999999999999953333444443445566 8999999975544434444444 43 55  34433


Q ss_pred             CCCCC---------------cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCcccc
Q 018705          129 PDASF---------------TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFA  192 (351)
Q Consensus       129 ~~~~~---------------~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~  192 (351)
                      .....               +.++++.+++.+++...                  .|.|..||..+++..... ......
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------------------KGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEECG------------------GGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------------------CCeEEEEEcCCCceeeeeccCCCce
Confidence            22222               77888888876555432                  467999998766543222 223446


Q ss_pred             ceEEEcCCCCEEEEEecceeEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHH
Q 018705          193 NGIALSKNEDFVVVCESWKRYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  271 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ..++++++++.++.+..++.+.+-+...++ ...+. ...+....+.+.++| ++++...                    
T Consensus       251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~--------------------  308 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSM--------------------  308 (425)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEET--------------------
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC-EEEEEeC--------------------
Confidence            789999999977777766622222222222 22222 222334567888888 4444332                    


Q ss_pred             hccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          272 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                      .+.+..+|..+++.+..+..+.+    .++.+...  +..|..++. .+.|..+++...
T Consensus       309 ----------------d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~  362 (425)
T 1r5m_A          309 ----------------DGSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAFM-DGQVNVYDLKKL  362 (425)
T ss_dssp             ----------------TSEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEET-TSCEEEEECHHH
T ss_pred             ----------------CCcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEEC-CCeEEEEECCCC
Confidence                            23577788757787777765433    45666654  344555554 667888887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.94  E-value=5.1e-07  Score=84.24  Aligned_cols=224  Identities=15%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEE-Eeec-------CCccccceEEcCCC
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTAT----------RDGWVKYFILHNETLVN-WKHI-------DSQSLLGLTTTKDG  105 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~-~~~~-------~~~p~~gl~~d~~G  105 (351)
                      ..+..|  ..|. ++++|++..+|++.          .++.|..||..+++... +.-.       +..|. ++++++||
T Consensus        73 ~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDG  148 (386)
T 3sjl_D           73 GMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDG  148 (386)
T ss_dssp             EEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTS
T ss_pred             EEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCC
Confidence            345555  4575 99999888999976          25679999998887643 3221       23799 99999999


Q ss_pred             C-EEEEeC--CCCeEEEcC-CC--eEEecCCC---CCccc----EEEccCCcE-EEEeCC-Ccc--------CCccc-cc
Q 018705          106 G-VILCDN--EKGLLKVTE-EG--VEAIVPDA---SFTND----VIAASDGTL-YFTVAS-TKY--------TPTDF-YK  161 (351)
Q Consensus       106 ~-L~v~d~--~~gl~~~~~-~g--~~~l~~~~---~~~n~----l~~d~dG~l-y~t~~~-~~~--------~~~~~-~~  161 (351)
                      + |||++.  .+.+..++. ++  +..+....   ..|.+    +++.+||.+ |++... .+.        ..... .+
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~  228 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI  228 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBC
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccc
Confidence            4 899975  345667774 55  44443221   22333    377788864 444322 121        00000 00


Q ss_pred             ----------ccccccCCceEEEEeCCCCeEEEeec----------Cccccce---EEEcCCCCEEEEEec---------
Q 018705          162 ----------DMAEGKPYGQLRKYDPKLKETTVLHE----------GFYFANG---IALSKNEDFVVVCES---------  209 (351)
Q Consensus       162 ----------~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~ng---i~~~~dg~~lyv~~~---------  209 (351)
                                .++.-...|.|+.+|..++..+....          ....|.|   ++++++++++|++..         
T Consensus       229 ~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~  308 (386)
T 3sjl_D          229 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  308 (386)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             ccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence                      01111123566777765544332211          1112434   889999999999753         


Q ss_pred             -ceeEEeecCCCCceeEEeccCCCCCCceEECCCCC--EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705          210 -WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS--FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  286 (351)
Q Consensus       210 -~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
                       .+++|+-+.+.++..... .+...|.++++++||+  ||++...                                   
T Consensus       309 ~~~~V~viD~~t~kv~~~i-~vg~~~~~lavs~D~~~~ly~tn~~-----------------------------------  352 (386)
T 3sjl_D          309 ASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTG-----------------------------------  352 (386)
T ss_dssp             CEEEEEEEETTTCCEEEEE-EEEEEECEEEECSSSSCEEEEEETT-----------------------------------
T ss_pred             CCCEEEEEECCCCeEEEEE-ECCCCcceEEECCCCCeEEEEEcCC-----------------------------------
Confidence             126776655444432222 1223478999999996  5555422                                   


Q ss_pred             CceEEEEEECCCCeEEEEEECC
Q 018705          287 AGARVVKVDGNDGKIIRDFNDP  308 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~~  308 (351)
                       .+.|..||.++++++.++..+
T Consensus       353 -~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          353 -DKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             -TTEEEEEETTTCCEEEEECCC
T ss_pred             -CCeEEEEECCCCcEEEEecCC
Confidence             136889999899999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.94  E-value=6.7e-07  Score=83.55  Aligned_cols=228  Identities=10%  Similarity=0.083  Sum_probs=141.5

Q ss_pred             EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCC
Q 018705           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDAS  132 (351)
Q Consensus        58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~  132 (351)
                      ++.+++..+.++..+|.|..||..+++..... ....... .++++++|+++++....+.+++.  .++  ...+.....
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  182 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA  182 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence            55656678888999999999998777665442 3334556 89999999866665555656655  344  555554446


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------------------------
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------------------  188 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------------------  188 (351)
                      .+.+++++++|...++.+.                 ++.|..||..+++.......                        
T Consensus       183 ~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  245 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASL-----------------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI  245 (420)
T ss_dssp             CEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred             cEEEEEEcCCCCEEEEEcC-----------------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence            7899999999987766543                 45688888776665433321                        


Q ss_pred             -ccccceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcC
Q 018705          189 -FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKC  263 (351)
Q Consensus       189 -~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~  263 (351)
                       ......++++++++.++.+..++  ++|  +...++. ..+.....+....++++++|. +.++...            
T Consensus       246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------------  311 (420)
T 3vl1_A          246 STSKKNNLEFGTYGKYVIAGHVSGVITVH--NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE------------  311 (420)
T ss_dssp             CCCCCCTTCSSCTTEEEEEEETTSCEEEE--ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET------------
T ss_pred             ccCcccceEEcCCCCEEEEEcCCCeEEEE--ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC------------
Confidence             12234567789998777776666  444  2222222 222212222345678899997 5555432            


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEECCCC-eEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCC
Q 018705          264 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG-KIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                                              .+.|..+|..++ +.+..+....+   ..++.+...++++++.....+.|..+++.
T Consensus       312 ------------------------dg~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          312 ------------------------NGMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             ------------------------TSEEEEEETTCTTSCSEEEEESTT---SCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred             ------------------------CCeEEEEEcCCCcCchhhhhccCC---CCceEEEeCCCCEEEEecCCccEEEEecc
Confidence                                    245777777444 33455544222   24566666677766666657778888876


Q ss_pred             CC
Q 018705          343 GP  344 (351)
Q Consensus       343 ~~  344 (351)
                      ..
T Consensus       365 ~~  366 (420)
T 3vl1_A          365 DP  366 (420)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.5e-06  Score=77.60  Aligned_cols=187  Identities=11%  Similarity=0.081  Sum_probs=112.7

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--  123 (351)
                      +.-....++++++++..++++..+|.|..||..+++.. .+........ .++++++|+++++....+.+++.  .++  
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  108 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQC  108 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            33345678999987778899999999999998777653 3333344556 89999999877665556655555  345  


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe------------EEEeec--Cc
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------------TTVLHE--GF  189 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~------------~~~~~~--~~  189 (351)
                      ...+. ....+..++++++|..+++.....            ....|.|..||..++.            ...+..  ..
T Consensus       109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          109 VATWK-SPVPVKRVEFSPCGNYFLAILDNV------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEE-CSSCEEEEEECTTSSEEEEEECCB------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEEee-cCCCeEEEEEccCCCEEEEecCCc------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            44444 236788999999997666543210            0112456666543221            111111  11


Q ss_pred             cccceEEEcCCCCEEEEEecceeEEeecCCC-Cc-eeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          190 YFANGIALSKNEDFVVVCESWKRYWLKGDRA-GI-LDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~-~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      .....++++++++.++++...+.+.+-+... .. ...+. ...+....++++++|++.++..
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEec
Confidence            2567899999999887777666322222222 22 22222 2223345678999998666543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.93  E-value=5.7e-06  Score=75.51  Aligned_cols=182  Identities=13%  Similarity=0.135  Sum_probs=115.3

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--C--
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E--  122 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~--  122 (351)
                      .+....-.++++++++..+.++..||.|..||..+++.. .+........ .+++.++|+++++....+.+++..  .  
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            343445568999977778899999999999998776543 3333334456 899999998777665666666652  2  


Q ss_pred             C-eE---EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEE
Q 018705          123 G-VE---AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIAL  197 (351)
Q Consensus       123 g-~~---~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~  197 (351)
                      + .+   .+......+..+.+.+++.+..+. .                 ++.|..||..+++...... .......+++
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s-~-----------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSS-G-----------------DTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTEEEEEE-T-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCcEEEEE-C-----------------CCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            2 22   222223566777777777654332 2                 4679999988776544333 2345678999


Q ss_pred             cCCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          198 SKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +|+++.++.+..++  ++|-  ...+.. ..+. ........++++++|++.++...
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd--~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWD--VREGMCRQTFT-GHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEE--TTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEeCCCcEEEEE--CCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence            99998666666555  5552  222222 2222 22233456789999987776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.93  E-value=7.2e-07  Score=89.67  Aligned_cols=193  Identities=13%  Similarity=0.097  Sum_probs=112.3

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CC-----C-e
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-----G-V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~-----g-~  124 (351)
                      ..+.+++++|+ +.+.++ .++.|+.+|..+++..........+. .++++++|+.++......++.++ .+     | .
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCc
Confidence            35778999976 666555 45899999998888766655455567 89999999754444444566666 36     7 4


Q ss_pred             EEecCCC-C--------------CcccEEEccCCc-EEEEeCCCccCCcccc-----------cc---ccc--ccCCceE
Q 018705          125 EAIVPDA-S--------------FTNDVIAASDGT-LYFTVASTKYTPTDFY-----------KD---MAE--GKPYGQL  172 (351)
Q Consensus       125 ~~l~~~~-~--------------~~n~l~~d~dG~-ly~t~~~~~~~~~~~~-----------~~---~~~--~~~~g~l  172 (351)
                      ..+.... .              .+.+++++|||+ |+++.... -....+.           ..   -..  ......|
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            4433221 1              158999999996 44443100 0000000           00   000  1123569


Q ss_pred             EEEeCCCCeEEEeecC---ccccceEEEcCCCCEEEEEecce-----eEEeecCCCC-ceeEEe-ccCCC---CCCceEE
Q 018705          173 RKYDPKLKETTVLHEG---FYFANGIALSKNEDFVVVCESWK-----RYWLKGDRAG-ILDAFI-ENLPG---GPDNINL  239 (351)
Q Consensus       173 ~~~d~~~~~~~~~~~~---~~~~ngi~~~~dg~~lyv~~~~~-----~~~i~~~~~~-~~~~~~-~~~~g---~pd~i~~  239 (351)
                      +.||.++++...+...   ...+..++++|||+.|+++..++     .+++-+...+ ....+. .....   ....+.+
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            9999998887655422   23456799999999888865432     3444333334 333222 11111   1256788


Q ss_pred             CC--CCCEEEE
Q 018705          240 AP--DGSFWIG  248 (351)
Q Consensus       240 d~--~G~lwva  248 (351)
                      ++  +|++.++
T Consensus       318 sp~~dg~~l~~  328 (706)
T 2z3z_A          318 LPGSNNQFIWQ  328 (706)
T ss_dssp             CTTCSSEEEEE
T ss_pred             ecCCCCEEEEE
Confidence            88  8974443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.92  E-value=1.1e-07  Score=88.58  Aligned_cols=224  Identities=10%  Similarity=-0.046  Sum_probs=126.3

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEEEeecC--------CccccceEEcCC
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTAT----------RDGWVKYFILHNETLVNWKHID--------SQSLLGLTTTKD  104 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~~~~~~--------~~p~~gl~~d~~  104 (351)
                      +.++..|  ..| +++++|+++.+|++.          .++.|..||+.+++...-...+        ..|. ++++++|
T Consensus        59 ~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpD  134 (368)
T 1mda_H           59 LGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCAS  134 (368)
T ss_dssp             EEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTT
T ss_pred             EEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3456666  358 999999889999987          3578999999888774332222        4699 9999999


Q ss_pred             C-CEEEEeCC-CCeEEE---cCCCeEEecCCC---CCccc----EEEccCCcE-EEEeCC-----CccCCc--------c
Q 018705          105 G-GVILCDNE-KGLLKV---TEEGVEAIVPDA---SFTND----VIAASDGTL-YFTVAS-----TKYTPT--------D  158 (351)
Q Consensus       105 G-~L~v~d~~-~gl~~~---~~~g~~~l~~~~---~~~n~----l~~d~dG~l-y~t~~~-----~~~~~~--------~  158 (351)
                      | .|||++.. ...+.+   |......+....   ..|.+    ++..+||.+ ++....     .+....        .
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             CCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence            9 69999854 343444   431133332110   11111    333445532 222211     010000        0


Q ss_pred             ----c--ccccccccCCceEEEEeCCCCeEEEeec----------Cccccce---EEEcCCCCEEEEEec---c------
Q 018705          159 ----F--YKDMAEGKPYGQLRKYDPKLKETTVLHE----------GFYFANG---IALSKNEDFVVVCES---W------  210 (351)
Q Consensus       159 ----~--~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~ng---i~~~~dg~~lyv~~~---~------  210 (351)
                          .  ...++.-.. +.++.+|..+++.+....          ....|.|   +++++|++.+|++..   +      
T Consensus       215 ~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~  293 (368)
T 1mda_H          215 QAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             CCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             CccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence                0  000111111 567888875443222211          1224566   899999999999753   3      


Q ss_pred             eeEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCce
Q 018705          211 KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA  289 (351)
Q Consensus       211 ~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                      ....+-+....+....+ ..+..|.+++++++|+ +|++....                                   .+
T Consensus       294 ~~~~ViD~~t~~vv~~i-~vg~~p~gi~~s~Dg~~l~va~~~~-----------------------------------~~  337 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAG-----------------------------------TE  337 (368)
T ss_dssp             EEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEEETT-----------------------------------TT
T ss_pred             CCEEEEECCCCeEEEEE-ECCCCcceEEECCCCCEEEEEccCC-----------------------------------CC
Confidence            21122222222221111 1223589999999996 89987621                                   13


Q ss_pred             EEEEEECCCCeEEEEEEC
Q 018705          290 RVVKVDGNDGKIIRDFND  307 (351)
Q Consensus       290 ~v~~~~~~~g~~~~~~~~  307 (351)
                      .|..+|.++++++..+..
T Consensus       338 ~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          338 VLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEESSSCEEEEECCC
T ss_pred             eEEEEECCCCcEEEEEEC
Confidence            688999988898888864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.92  E-value=2.6e-06  Score=77.84  Aligned_cols=223  Identities=13%  Similarity=0.068  Sum_probs=138.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe----E-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET----L-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V  124 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~----~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~  124 (351)
                      ..+++++|++..+.++..++.|..|+..+++    . ..+....+... .+.+.+++.+..+... +.++++  .++  .
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d-~~i~~wd~~~~~~~  177 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGD-TTCALWDIETGQQT  177 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETT-SCEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECC-CcEEEEECCCCcEE
Confidence            3477888777888889999999999975542    1 22222334445 7778778877666654 445554  355  4


Q ss_pred             EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCE
Q 018705          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDF  203 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~  203 (351)
                      ..+......+.++++.|+|.++++.+.                 ++.|..||..+++..... ......+.++++|+++.
T Consensus       178 ~~~~~h~~~v~~~~~~~~~~~l~sg~~-----------------d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          178 TTFTGHTGDVMSLSLAPDTRLFVSGAC-----------------DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEcCCCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence            445444467889999999988877654                 567999998776654333 33345788999999997


Q ss_pred             EEEEecce--eEEeecCCCCc-eeEEec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          204 VVVCESWK--RYWLKGDRAGI-LDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~~~~~-~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      +..+..++  ++|-  ...++ ...+.. ........++++++|++.++...                            
T Consensus       241 l~s~s~d~~v~iwd--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----------------------------  290 (340)
T 1got_B          241 FATGSDDATCRLFD--LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----------------------------  290 (340)
T ss_dssp             EEEEETTSCEEEEE--TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET----------------------------
T ss_pred             EEEEcCCCcEEEEE--CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC----------------------------
Confidence            77776666  5552  12222 122211 11111244688999987776543                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCE-EEEEecCCCeEEE
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGN-LYLASLQSNFIGI  338 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~-L~ig~~~~~~i~~  338 (351)
                              .+.|..+|..+++.+..+..+.+    .++++... +|+ |.-|+. .+.|..
T Consensus       291 --------d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~-D~~i~i  338 (340)
T 1got_B          291 --------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSW-DSFLKI  338 (340)
T ss_dssp             --------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEET-TSCEEE
T ss_pred             --------CCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcC-CccEEe
Confidence                    23577778657777777766543    46666654 343 444443 344443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.91  E-value=6.4e-06  Score=73.84  Aligned_cols=142  Identities=13%  Similarity=0.111  Sum_probs=99.1

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~  126 (351)
                      ....+++++|++..+.++..+|.|..||..+++.. .+........ .+++.++++++++....+.+++.  +++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            34568899987788899999999999998777653 3333334456 88999999877765555655555  345  455


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ec-CccccceEEEcCCCCEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HE-GFYFANGIALSKNEDFV  204 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~-~~~~~ngi~~~~dg~~l  204 (351)
                      +......+..++++++|.++++.+.                 +|.|..||..+++.... .. .......++++|+++.+
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  207 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI  207 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEE
Confidence            5443356788999999987776654                 46789999877654332 22 22334678999999977


Q ss_pred             EEEecce
Q 018705          205 VVCESWK  211 (351)
Q Consensus       205 yv~~~~~  211 (351)
                      +.+..++
T Consensus       208 ~~~~~d~  214 (312)
T 4ery_A          208 LAATLDN  214 (312)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCC
Confidence            7776666

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.91  E-value=3.3e-06  Score=75.82  Aligned_cols=179  Identities=13%  Similarity=0.082  Sum_probs=110.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE----EEEe--ecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL----VNWK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~----~~~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g  123 (351)
                      ....++++++++..++++. +|.|..|+..+++.    ..+.  ....... .++++++|+++++....+.+++. . ++
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            4567899997666777777 99999999866532    2222  2234456 89999999765554444544444 2 33


Q ss_pred             -e---EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEc
Q 018705          124 -V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALS  198 (351)
Q Consensus       124 -~---~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~  198 (351)
                       .   ..+......+.+++++++|...++.+.                 +|.|..||..+++...... .......++++
T Consensus       130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          130 TPRIKAELTSSAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CcceeeecccCCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence             2   222222356788999999976665543                 4679999988776544333 33456789999


Q ss_pred             CCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          199 KNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       199 ~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ++++.++.+...+.+.+-+...++..... ..++....++++++|++.+...
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEc
Confidence            99997877776653222222222222111 2233346678889998665543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.90  E-value=6.7e-07  Score=82.36  Aligned_cols=227  Identities=11%  Similarity=0.123  Sum_probs=138.3

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEe--ecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eE
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      .+++|. .++.+.++..+|.|..||..+++..   ...  ....... .+++.++|+++++....+.++++  .++  +.
T Consensus        86 ~~~~~s-~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           86 ADLTWV-GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEE-TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEe-CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            478898 4688889999999999998777431   111  1234456 89999999877766666777776  355  55


Q ss_pred             EecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec---CccccceEEEcCCC
Q 018705          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GFYFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~ngi~~~~dg  201 (351)
                      .+......++.+++.+++ .++++.+.                 ++.|..||..+++......   .......++++|++
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~  226 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ  226 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred             EEcCcCCceEEEEecCCCCCceeeecc-----------------ccccccccccccceeeeeecceeeccceeeeecCCC
Confidence            555444678899999988 57777654                 4678899987765433221   12346788999865


Q ss_pred             C-EEEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705          202 D-FVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  276 (351)
Q Consensus       202 ~-~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      . .+..+..++  ++|  +...++ ...+. ........+++.++|. +.++...                         
T Consensus       227 ~~~l~sg~~dg~v~~w--d~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~-------------------------  278 (344)
T 4gqb_B          227 SEVFVFGDENGTVSLV--DTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSE-------------------------  278 (344)
T ss_dssp             TTEEEEEETTSEEEEE--ESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEET-------------------------
T ss_pred             CcceEEeccCCcEEEE--ECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeC-------------------------
Confidence            4 344445444  454  222222 22222 2222335678888885 4444332                         


Q ss_pred             hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                 .+.|..+|...++.+ .+..+.    ..++++...  +..|..+....+.|...+++..
T Consensus       279 -----------D~~i~vwd~~~~~~~-~~~~H~----~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          279 -----------DCSLAVLDSSLSELF-RSQAHR----DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             -----------TSCEEEECTTCCEEE-EECCCS----SCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             -----------CCeEEEEECCCCcEE-EEcCCC----CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence                       134666787455543 444333    357777764  3456655444677888887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.90  E-value=1.6e-06  Score=88.27  Aligned_cols=233  Identities=9%  Similarity=0.054  Sum_probs=145.6

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eE
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      -....+++++|++..+.++..+|.|..||..+++.. .+........ +++++++|+.+++....+.+++.  .++  ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            345679999988888999999999999998777653 4443444556 89999999866655555666665  355  45


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEE-eecCccccceEEEcC-CCC
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTV-LHEGFYFANGIALSK-NED  202 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~-~~~~~~~~ngi~~~~-dg~  202 (351)
                      .+......+.+++++++|...++.+.                 +|.|..||..++ .... +...-.....++++| +++
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  154 (814)
T 3mkq_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred             EEecCCCCEEEEEEeCCCCEEEEEcC-----------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence            55444467889999999976555433                 467888887655 3322 233334567899999 777


Q ss_pred             EEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECC--CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhh
Q 018705          203 FVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAP--DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  278 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~--~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
                      .++++..++  ++|-... ......+..........+.+.+  +|.+.++...                           
T Consensus       155 ~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------------------------  206 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDKPYMITASD---------------------------  206 (814)
T ss_dssp             EEEEEETTSEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT---------------------------
T ss_pred             EEEEEeCCCeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC---------------------------
Confidence            666666665  4442211 1111222212223345667776  7876665432                           


Q ss_pred             cccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEEecCCCeEEEEeCCC
Q 018705          279 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       279 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig~~~~~~i~~~~~~~  343 (351)
                               .+.|..+|..+++.+..+..+.+    .++.+... ++ .|..++. .+.|..+++.+
T Consensus       207 ---------dg~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~  259 (814)
T 3mkq_A          207 ---------DLTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGSE-DGTLKIWNSST  259 (814)
T ss_dssp             ---------TSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEET-TSCEEEEETTT
T ss_pred             ---------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Confidence                     24577778656777777765433    35666554 23 4555543 56677777665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.90  E-value=1.5e-06  Score=81.82  Aligned_cols=227  Identities=15%  Similarity=0.188  Sum_probs=143.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      ...++++++++..+.++..||.|..||..+++.. .+........ .+++.++|+.+++....+.++++  .++  ...+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            3457899977778889999999999998776543 3333334456 89999999877766666777776  355  5555


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCC------
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKN------  200 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~d------  200 (351)
                      ......++.+.++++|.++++.+.                 ++.|..||..+++..... ......+.++++|+      
T Consensus       231 ~~h~~~v~~~~~~~~g~~l~s~s~-----------------D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  293 (410)
T 1vyh_C          231 TGHREWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI  293 (410)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred             eCCCccEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccch
Confidence            444467888999999988877654                 467888888776654333 22344567888886      


Q ss_pred             --------------CCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcC
Q 018705          201 --------------EDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKC  263 (351)
Q Consensus       201 --------------g~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~  263 (351)
                                    +..++.+..++  ++|  +...+.. ..+. ...+....++++++|++.++...            
T Consensus       294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw--d~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~------------  358 (410)
T 1vyh_C          294 SEATGSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCAD------------  358 (410)
T ss_dssp             GGCCSCC-------CCEEEEEETTSEEEEE--ETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEET------------
T ss_pred             hhhccccccccCCCCCEEEEEeCCCeEEEE--ECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeC------------
Confidence                          55566565555  555  2222322 2222 22233456789999987666543            


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC-C-EEEEEecCCCeEEEEeC
Q 018705          264 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-G-NLYLASLQSNFIGILPL  341 (351)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~ig~~~~~~i~~~~~  341 (351)
                                              .+.|..+|..+++.+..+..+.+    .++++..+. + .|..|+. .+.|..+++
T Consensus       359 ------------------------D~~i~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~sgs~-D~~i~vW~~  409 (410)
T 1vyh_C          359 ------------------------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSV-DQTVKVWEC  409 (410)
T ss_dssp             ------------------------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEET-TSEEEEEC-
T ss_pred             ------------------------CCeEEEEECCCCceEEEEcCCCC----cEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Confidence                                    13466667656666677765443    467777653 3 3444443 555665554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.90  E-value=7e-07  Score=82.99  Aligned_cols=179  Identities=11%  Similarity=0.061  Sum_probs=107.2

Q ss_pred             CCCceEEEeeCCC-eEEEEEcCCEEEEEEc----CCCe------E-EEEee----------cCCccccceEEcCCCCEEE
Q 018705           52 NHPEDVSVVVSKG-ALYTATRDGWVKYFIL----HNET------L-VNWKH----------IDSQSLLGLTTTKDGGVIL  109 (351)
Q Consensus        52 ~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~----~~g~------~-~~~~~----------~~~~p~~gl~~d~~G~L~v  109 (351)
                      ....+++++|++. .+.++..+|.|..|+.    .+++      . ..+..          ...... .++++++|++++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~  124 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT-CLAWSHDGNSIV  124 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE-EEEECTTSSEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceE-EEEEcCCCCEEE
Confidence            3467999998777 8889999999999998    7776      2 22222          122456 899999997666


Q ss_pred             EeCCCCeEEEc-CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          110 CDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       110 ~d~~~gl~~~~-~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      +....+.+++. .++  ...+......+.+++++++|...++.+.                 ++.|..||..+++.....
T Consensus       125 ~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          125 TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-----------------ENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-----------------TCCEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEec-----------------CCeEEEEECCCCcEEEEe
Confidence            55455545554 455  5555444467889999999976655443                 467888888776654333


Q ss_pred             cCc-cc---------------cceEEEcCCCCEEEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEE
Q 018705          187 EGF-YF---------------ANGIALSKNEDFVVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       187 ~~~-~~---------------~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ... ..               ...+++++++. ++++...+.+.+-+...++. ..+. ...+....++++++|++.++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEE
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEE
Confidence            221 11               66788988874 66665555222222112221 2222 222233567888888866654


Q ss_pred             e
Q 018705          250 I  250 (351)
Q Consensus       250 ~  250 (351)
                      .
T Consensus       266 ~  266 (425)
T 1r5m_A          266 S  266 (425)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.90  E-value=3.5e-06  Score=82.47  Aligned_cols=232  Identities=13%  Similarity=0.131  Sum_probs=147.7

Q ss_pred             CceEEEee--CCCeEEEEEcCCEEEEEEcCCC--------eE-EEEeecCCccccceEEcCCCCEEEEeCCC----CeEE
Q 018705           54 PEDVSVVV--SKGALYTATRDGWVKYFILHNE--------TL-VNWKHIDSQSLLGLTTTKDGGVILCDNEK----GLLK  118 (351)
Q Consensus        54 pe~i~~d~--~~g~lyv~~~~g~I~~~d~~~g--------~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~----gl~~  118 (351)
                      ..+++++|  ++..++++..+|.|..|+..++        +. ..+........ .++++++|+.+++....    +.+.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            57899998  7788899999999999998544        22 22333344556 89999999765544332    4555


Q ss_pred             EcCCC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-cc---c
Q 018705          119 VTEEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FY---F  191 (351)
Q Consensus       119 ~~~~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~---~  191 (351)
                      +...+  ...+......++.++++++|. +.++.+.                 ++.|..||..+++....... ..   .
T Consensus       146 ~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~~~~  208 (615)
T 1pgu_A          146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHHKQGSF  208 (615)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             EEECCCcceeeecCCccEEEEEECCCCCcEEEEEeC-----------------CCcEEEEeCCCcceeeeecccCCCCce
Confidence            55544  555544446788999999996 5655543                 46899999877765443332 23   4


Q ss_pred             cceEEEcCC-CCEEEEEecce--eEEeecCCCCce-eEEec---cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          192 ANGIALSKN-EDFVVVCESWK--RYWLKGDRAGIL-DAFIE---NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       192 ~ngi~~~~d-g~~lyv~~~~~--~~~i~~~~~~~~-~~~~~---~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      ...++++|+ ++.++.+..++  ++|-  ...++. ..+..   ...+....+.++ +|++.++...             
T Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------------  272 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVGSDRKISCFD--GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-------------  272 (615)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEE--TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-------------
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEE--CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC-------------
Confidence            678999999 98777777666  4442  122222 22211   122233457788 8876666543             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE-ECCEEEEEecCCCeEEEEeCCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                             .+.+..+|..+++.+..+..+.......+..+.. .+..+..++. .+.|..+++..
T Consensus       273 -----------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d~~~  328 (615)
T 1pgu_A          273 -----------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYELGH  328 (615)
T ss_dssp             -----------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEETTE
T ss_pred             -----------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEEECCC
Confidence                                   1357778885688888887653333334555544 5666777765 67788888764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.89  E-value=2.4e-06  Score=77.70  Aligned_cols=244  Identities=11%  Similarity=0.030  Sum_probs=143.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCC-----CeEEE-c-C-CC-
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-----GLLKV-T-E-EG-  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-----gl~~~-~-~-~g-  123 (351)
                      ...++++++++..++++..+|.|..||..+++..........+. .++++++|+.+++....     +.+++ + . .. 
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~  154 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA  154 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence            45688999777788899999999999987776644334445566 89999999766654443     43333 3 1 11 


Q ss_pred             ---eEEecCC--------C--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-CeEEE-eecC
Q 018705          124 ---VEAIVPD--------A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTV-LHEG  188 (351)
Q Consensus       124 ---~~~l~~~--------~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~-~~~~  188 (351)
                         .......        .  ..+..++++++|...++...                 +|.|..||..+ ++... +...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------------DGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------------TSEEEEEETTTTTEEEEEEECC
T ss_pred             ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------------CCEEEEEECCCCcEeEEEEecC
Confidence               1111111        0  26788899999976665433                 46899999876 44333 3333


Q ss_pred             ccccceEEEcCCCCEEEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCc-hhhhhhhcChhH
Q 018705          189 FYFANGIALSKNEDFVVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQ-TGVRAIQKCREK  266 (351)
Q Consensus       189 ~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~-~~~~~~~~~~~~  266 (351)
                      .....+++++++++.|+.+..++.+.+-+...++. ..+.  .......++++++|.+.+....... ..+...      
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------  289 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS------  289 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC--------------
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEe------
Confidence            44567899999999787776666322222222222 2222  2223456788999985555443211 111000      


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          267 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                       .......+..+|..+++.+..+..+.+    .++++... ++++.++....+.|..+++..
T Consensus       290 -----------------~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          290 -----------------ANEGKFEARFYHKIFEEEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ----------------------CEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             -----------------cCCCcceeEEEecCCCcchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                             001112466778767788887765543    46666654 344444444467788887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.89  E-value=1.1e-06  Score=77.24  Aligned_cols=163  Identities=13%  Similarity=0.110  Sum_probs=103.4

Q ss_pred             cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C-C-eEEecCCC--CCcccEEEccCCcE
Q 018705           71 RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E-G-VEAIVPDA--SFTNDVIAASDGTL  145 (351)
Q Consensus        71 ~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-g-~~~l~~~~--~~~n~l~~d~dG~l  145 (351)
                      .++.|+.+|..+++.+.+......+. .++++++|+.+++.....++.++. + + ...+....  ..+.++++++||..
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             cceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            46789999998888776655556677 999999998666655556777773 6 6 55443322  56788999999964


Q ss_pred             EEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe-cce--eEEeecCCCCc
Q 018705          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE-SWK--RYWLKGDRAGI  222 (351)
Q Consensus       146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~-~~~--~~~i~~~~~~~  222 (351)
                      ++......             .....|+.++..+++.+.+... ...+.++++||++.++++. ..+  ++|.-+...+.
T Consensus        99 l~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           99 YAISDKVE-------------FGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             EEEEECTT-------------TSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             EEEEEeCC-------------CCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            44432100             1235799999877765554332 3467789999999777543 333  55543322233


Q ss_pred             eeEEeccCCCCCCceEECCCCC-EEEEE
Q 018705          223 LDAFIENLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       223 ~~~~~~~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      ...+. ...+....+.++++|+ ++++.
T Consensus       165 ~~~~~-~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          165 ETRLT-HGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEcc-cCCCccccceECCCCCEEEEEe
Confidence            33322 2233345678899997 44443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.89  E-value=4.3e-06  Score=75.68  Aligned_cols=182  Identities=15%  Similarity=0.163  Sum_probs=113.2

Q ss_pred             CCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCC--e----EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-
Q 018705           49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNE--T----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-  120 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g--~----~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-  120 (351)
                      +.-..-.++++.+.+ +.+.++..|+.|..|+..+.  +    ...+........ .+++.++|+++++....+.++++ 
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEEE
Confidence            433445678898655 57888999999998886321  1    123333334455 88999999887776667777777 


Q ss_pred             -CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705          121 -EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (351)
Q Consensus       121 -~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~  197 (351)
                       .++  ...+......+++++++++|.+.++.+.                 ++.|..||.+.+....+.........+++
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----------------D~~i~vwd~~~~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----------------DKTIKVWTIKGQCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTSCEEEEECCCSSCEEEEEE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCeEEEEeccCCcEEEEEE
Confidence             355  4555444467889999999988877654                 46788888775555544443444566777


Q ss_pred             cCC------CCEEEEEecce--eEEeecCCCCcee-EEeccCCCCCCceEECCCCCEEEEEec
Q 018705          198 SKN------EDFVVVCESWK--RYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~d------g~~lyv~~~~~--~~~i~~~~~~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .|+      +..++.+..++  ++|-.  ...+.. .+. ...+....++++++|++.++...
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNL--NQFQIEADFI-GHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEET--TTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEEC--Ccchhheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            774      33455555555  55522  222221 122 22223345788999987776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.88  E-value=6.9e-08  Score=92.52  Aligned_cols=184  Identities=12%  Similarity=0.166  Sum_probs=105.7

Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cC------ccccce
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EG------FYFANG  194 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~------~~~~ng  194 (351)
                      +++++..+..|.++++++||++||++..                 .++|+++++.+++.+.+.   ..      ...+.|
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllg   81 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLG   81 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEE
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeE
Confidence            5667776788999999999999999864                 247999987666655433   11      233459


Q ss_pred             EEEcCC---CCEEEEEecc-------------e---eEEeecC--CCCceeEEeccCC----CCCCceEECCCCCEEEEE
Q 018705          195 IALSKN---EDFVVVCESW-------------K---RYWLKGD--RAGILDAFIENLP----GGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       195 i~~~~d---g~~lyv~~~~-------------~---~~~i~~~--~~~~~~~~~~~~~----g~pd~i~~d~~G~lwva~  249 (351)
                      |+++||   +..||++.+.             .   |+...+.  .....+.+...++    ..+.+|++++||+|||+.
T Consensus        82 ia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A           82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence            999996   5679998753             2   4544432  1122333332222    236779999999999998


Q ss_pred             ecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCe-----------EEEEEECCCCCcccceeE
Q 018705          250 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK-----------IIRDFNDPDATYISFVTS  318 (351)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-----------~~~~~~~~~g~~~~~~~~  318 (351)
                      ........+.. ..+.-   ..+.|..-...........+.|+|+++ +|+           ..+.+..  |  +.++..
T Consensus       162 Gd~~~~~~~~~-~~~~~---~~~~p~~~~~~aq~~~~~~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a~--G--~RNp~g  232 (454)
T 1cru_A          162 GDQGRNQLAYL-FLPNQ---AQHTPTQQELNGKDYHTYMGKVLRLNL-DGSIPKDNPSFNGVVSHIYTL--G--HRNPQG  232 (454)
T ss_dssp             CCTTTTSGGGT-TSCCC---TTCCCCHHHHHTTCCTTCSSEEEEECT-TSCCCTTCCEETTEECSEEEB--C--CSEEEE
T ss_pred             CCCCCCCcccc-ccccc---cccccccccccccCCCCCCeeEEEEeC-CCCCCCCCCCCCCCcceEEEE--C--CCCcce
Confidence            75322110000 00000   000000000000000123578999999 997           2333432  2  235666


Q ss_pred             EEEE-CCEEEEEecCC
Q 018705          319 AAEF-DGNLYLASLQS  333 (351)
Q Consensus       319 ~~~~-~g~L~ig~~~~  333 (351)
                      +..+ .|+||++....
T Consensus       233 la~dp~G~L~~~d~g~  248 (454)
T 1cru_A          233 LAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             EEECTTSCEEEEEECS
T ss_pred             EEECCCCCEEEEecCC
Confidence            6665 58999998644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.88  E-value=5.6e-07  Score=78.30  Aligned_cols=155  Identities=16%  Similarity=0.145  Sum_probs=107.5

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--CccccceEEEcCCCCEEEEEec
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      .+..++.+++ +++|+++..+               ....|.++|++++++..-..  .-.+..|+++.  ++.||+...
T Consensus        21 ~ftqGL~~~~-~~LyestG~~---------------g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw   82 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGET---------------GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTW   82 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCT---------------TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES
T ss_pred             cccccEEEEC-CEEEEECCCC---------------CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEe
Confidence            6788999986 7999998641               13479999999998765433  23345666665  557999875


Q ss_pred             ce-eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCC
Q 018705          210 WK-RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  287 (351)
Q Consensus       210 ~~-~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
                      .. +.++-+....+ ...+.  .++.+.+++.| .++||++...                                    
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~--~~~~Gwglt~d-g~~L~vSdgs------------------------------------  123 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFR--YPGEGWALTSD-DSHLYMSDGT------------------------------------  123 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEE--CSSCCCEEEEC-SSCEEEECSS------------------------------------
T ss_pred             eCCEEEEEECCcCcEEEEEe--CCCCceEEeeC-CCEEEEECCC------------------------------------
Confidence            55 55554433222 22232  23445677765 3679999643                                    


Q ss_pred             ceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          288 GARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                       ..|..+||++.+++..+.. .++.....+..+...+|+||+..+..+.|.++++++-
T Consensus       124 -~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          124 -AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             -SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTC
T ss_pred             -CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCC
Confidence             3588999977888888865 2455556677777789999999999999999997653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.88  E-value=7.5e-07  Score=83.25  Aligned_cols=231  Identities=13%  Similarity=0.046  Sum_probs=139.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC-e-EEecC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-V-EAIVP  129 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g-~-~~l~~  129 (351)
                      ..+++++|++..++++..+|.|..||..+++............ ..++.++|+++++....+.+++. . .+ . ..+..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTA-VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEE-EEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceE-EEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            4589999988899999999999999986554322111111122 34567888766655555655555 3 44 3 33333


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCEEEEEe
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      ....+.+++++++|.+.++.+.                 ++.|..||..+++. ..+.........++++|+++.|+.+.
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~-----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQ-----------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCccEEEEECCCCCEEEEEeC-----------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence            3467899999999987766543                 46899999876654 33333344567899999999777776


Q ss_pred             cce--eEEeecCCCCce-eEEecc-----------------------CCCCCCceEECCCCCEEEEEecCCchhhhhhhc
Q 018705          209 SWK--RYWLKGDRAGIL-DAFIEN-----------------------LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQK  262 (351)
Q Consensus       209 ~~~--~~~i~~~~~~~~-~~~~~~-----------------------~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~  262 (351)
                      .++  ++|-.  ..++. ..+...                       .......++++++|++.++...           
T Consensus       201 ~d~~v~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------  267 (420)
T 3vl1_A          201 LDGTIRLWEC--GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-----------  267 (420)
T ss_dssp             TTSCEEEEET--TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-----------
T ss_pred             CCCcEEEeEC--CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-----------
Confidence            666  55521  11221 111100                       0112234566778865554332           


Q ss_pred             ChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC-C--EEEEEecCCCeEEEE
Q 018705          263 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-G--NLYLASLQSNFIGIL  339 (351)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g--~L~ig~~~~~~i~~~  339 (351)
                                               .+.|..+|..+++....+....   ...++++.... +  .|+.|+ ..+.|..+
T Consensus       268 -------------------------dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~g~-~dg~i~vw  318 (420)
T 3vl1_A          268 -------------------------SGVITVHNVFSKEQTIQLPSKF---TCSCNSLTVDGNNANYIYAGY-ENGMLAQW  318 (420)
T ss_dssp             -------------------------TSCEEEEETTTCCEEEEECCTT---SSCEEEEEECSSCTTEEEEEE-TTSEEEEE
T ss_pred             -------------------------CCeEEEEECCCCceeEEccccc---CCCceeEEEeCCCCCEEEEEe-CCCeEEEE
Confidence                                     2346677775666665554321   23466666543 3  455555 46789999


Q ss_pred             eCCCC
Q 018705          340 PLDGP  344 (351)
Q Consensus       340 ~~~~~  344 (351)
                      ++++.
T Consensus       319 d~~~~  323 (420)
T 3vl1_A          319 DLRSP  323 (420)
T ss_dssp             ETTCT
T ss_pred             EcCCC
Confidence            98765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.88  E-value=4.4e-07  Score=79.79  Aligned_cols=178  Identities=11%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCC-CeEEEEeecC--CccccceEEcCCCCEEEEeC-----CCCeEEEcC-C
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN-ETLVNWKHID--SQSLLGLTTTKDGGVILCDN-----EKGLLKVTE-E  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~-g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~-----~~gl~~~~~-~  122 (351)
                      ....+++++|++..++++. ++.|+.+|..+ ++........  ..+. .++++++|+.+++..     ...++.++. +
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTG  119 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence            3567999997666666654 78999999987 7665543222  3456 899999997554433     235666664 4


Q ss_pred             C-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCC
Q 018705          123 G-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN  200 (351)
Q Consensus       123 g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~d  200 (351)
                      + .+.+... ..++.+++++||. ++++....               ..-.||.++..+++...+.........++++|+
T Consensus       120 ~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d  183 (297)
T 2ojh_A          120 GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRD---------------QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPD  183 (297)
T ss_dssp             CCCEECCSS-SSEEEEEECTTSSEEEEEEEET---------------TEEEEEEEETTTCCEEECCCSSSCEEEEEECTT
T ss_pred             CceEEeecC-CCccceEECCCCCEEEEEECCC---------------CceEEEEEECCCCcceEcccCCCccccceECCC
Confidence            4 5554433 3477789999996 55454320               012688888877777666555556788999999


Q ss_pred             CCEEEEEec-ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705          201 EDFVVVCES-WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       201 g~~lyv~~~-~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      ++.++++.. .+  ++|.-+...+....+.. .......+.++++|+..+.
T Consensus       184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          184 GRWIYFNSSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEE
T ss_pred             CCEEEEEecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEE
Confidence            997777653 33  55544322233332221 1112334678999985443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.88  E-value=2.1e-06  Score=80.07  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=85.0

Q ss_pred             eeCCCeEEEEEc-----CCEEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeC----------CCCeEEEcC-C
Q 018705           60 VVSKGALYTATR-----DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN----------EKGLLKVTE-E  122 (351)
Q Consensus        60 d~~~g~lyv~~~-----~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~----------~~gl~~~~~-~  122 (351)
                      .|+++.+|+...     ++.|+.+|..++++..-...+..|  +++++++| .||+++.          .+.+..+|. +
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            456788999875     579999999888875544555666  49999999 5999873          123666774 4


Q ss_pred             C--eEEecCC-------CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----
Q 018705          123 G--VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----  188 (351)
Q Consensus       123 g--~~~l~~~-------~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----  188 (351)
                      +  ...+...       ...|..+++++|| .+|+++..                ..+.|..+|..++++......    
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~~  182 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCY  182 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCcc
Confidence            4  3433221       1479999999999 58998742                124677777776665332211    


Q ss_pred             ccccce----EEEcCCCCEEEEEe
Q 018705          189 FYFANG----IALSKNEDFVVVCE  208 (351)
Q Consensus       189 ~~~~ng----i~~~~dg~~lyv~~  208 (351)
                      ..+|.|    +++++||+.+|+..
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEC
T ss_pred             eeecCCCceeEEECCCCCEEEEEC
Confidence            123444    36666776666644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=1e-06  Score=81.66  Aligned_cols=127  Identities=14%  Similarity=0.119  Sum_probs=74.8

Q ss_pred             CCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEECCCCCE
Q 018705          168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSF  245 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~l  245 (351)
                      ..+.|+.+|+++|+...... .....+++.+  ++.+|++...+ .+.++ ...++..-....... ....... .+|+|
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~--~~~l~~~~~~g~l~~~d-~~tG~~~w~~~~~~~~~~~~~~~-~~~~l  321 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE-LGSVNDFIVD--GNRIYLVDQNDRVMALT-IDGGVTLWTQSDLLHRLLTSPVL-YNGNL  321 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-CCCEEEEEEE--TTEEEEEETTCCEEEEE-TTTCCEEEEECTTTTSCCCCCEE-ETTEE
T ss_pred             cCcEEEEEECCCCcEEeecc-CCCCCCceEE--CCEEEEEcCCCeEEEEE-CCCCcEEEeecccCCCcccCCEE-ECCEE
Confidence            35789999998887653322 2333445553  44699987665 33333 233443322211111 1122333 35789


Q ss_pred             EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCE
Q 018705          246 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGN  325 (351)
Q Consensus       246 wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~  325 (351)
                      |+++..                                     +.+..+|+++|+.+..+....+.   ..+.....+++
T Consensus       322 ~v~~~~-------------------------------------g~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~  361 (376)
T 3q7m_A          322 VVGDSE-------------------------------------GYLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGK  361 (376)
T ss_dssp             EEECTT-------------------------------------SEEEEEETTTCCEEEEEECCTTC---BCSCCEEETTE
T ss_pred             EEEeCC-------------------------------------CeEEEEECCCCcEEEEEecCCCc---ceeCCEEECCE
Confidence            998543                                     46999998789988777653322   22334456899


Q ss_pred             EEEEecCCCeEEEEe
Q 018705          326 LYLASLQSNFIGILP  340 (351)
Q Consensus       326 L~ig~~~~~~i~~~~  340 (351)
                      ||+++. .+.|..++
T Consensus       362 l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          362 LLIQAK-DGTVYSIT  375 (376)
T ss_dssp             EEEEBT-TSCEEEEE
T ss_pred             EEEEeC-CCEEEEEe
Confidence            999987 56687775

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.86  E-value=6.6e-07  Score=82.79  Aligned_cols=241  Identities=10%  Similarity=0.044  Sum_probs=144.2

Q ss_pred             CCceEEEee-CCCeEEEEEcCCEEEEEEcCCCeEEEEeecC---CccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eE
Q 018705           53 HPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~---~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~  125 (351)
                      ...++++.| ++..++++..+|.|..||..+.....+....   .... .+++.++++++++....+.+++. .++  ..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCEEE
Confidence            445889986 3467788899999999998766665554332   3356 89999999876665555666665 344  55


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC----CeEEEeecCccccceEEEcC-
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL----KETTVLHEGFYFANGIALSK-  199 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~----~~~~~~~~~~~~~ngi~~~~-  199 (351)
                      .+......+.+++++++|. ++++.+.                 ++.|..||..+    ++.............++++| 
T Consensus       199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  261 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNPRCDWLMATSSV-----------------DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPT  261 (383)
T ss_dssp             EEECSSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTT
T ss_pred             EeccCCCcEEEEEECCCCCCEEEEEeC-----------------CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCC
Confidence            5544446789999999997 7776654                 46788888765    44433333445677899999 


Q ss_pred             CCCEEEEEecce--eEEe-ecCCCCceeEEecc---C--CCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHH
Q 018705          200 NEDFVVVCESWK--RYWL-KGDRAGILDAFIEN---L--PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  271 (351)
Q Consensus       200 dg~~lyv~~~~~--~~~i-~~~~~~~~~~~~~~---~--~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      +++.++.+..++  ++|- ....  ....+...   .  ...+-...+.+++.+......+....               
T Consensus       262 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---------------  324 (383)
T 3ei3_B          262 DSTKLLTTDQRNEIRVYSSYDWS--KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---------------  324 (383)
T ss_dssp             TSCEEEEEESSSEEEEEETTBTT--SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc--cccccccccccccccccceEEeccCCCCceEEEecCCccc---------------
Confidence            999777777665  4442 1111  11111110   0  01122245666666554443321110               


Q ss_pred             hccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          272 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                  .+...+.|..+|..+++.+..+..+..  ...++.+... ++++.++.. .+.|..+++.+
T Consensus       325 ------------s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 ------------LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ------------CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ------------ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                        013445688889767888888864321  1234554444 344434433 67888888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.86  E-value=1.2e-06  Score=81.15  Aligned_cols=215  Identities=15%  Similarity=0.131  Sum_probs=123.9

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eE-EecCCC-----CC
Q 018705           62 SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VE-AIVPDA-----SF  133 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~-~l~~~~-----~~  133 (351)
                      .++.+|+++.++.|+.+|.++|+..-.............+ .+|.+|++...+.++.++. +| .. ......     ..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            4789999999999999999888764222222222202223 4678999887777999995 77 22 221111     01


Q ss_pred             cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcccc-------------ceEEEcCC
Q 018705          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-------------NGIALSKN  200 (351)
Q Consensus       134 ~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-------------ngi~~~~d  200 (351)
                      ....+++ +|.+|+...                  .+.|+.+|+++|+....... ..+             ....+ .+
T Consensus       181 ~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~-~~  239 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV-VN  239 (376)
T ss_dssp             CCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE-ET
T ss_pred             CCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE-EC
Confidence            1223333 667887543                  36799999888876432211 111             11112 23


Q ss_pred             CCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          201 EDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       201 g~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                       ..+|++...+ .+.++ ...++..-.. .... ...+..+ ++++|+++..                            
T Consensus       240 -~~v~~~~~~g~l~~~d-~~tG~~~w~~-~~~~-~~~~~~~-~~~l~~~~~~----------------------------  286 (376)
T 3q7m_A          240 -GVVFALAYNGNLTALD-LRSGQIMWKR-ELGS-VNDFIVD-GNRIYLVDQN----------------------------  286 (376)
T ss_dssp             -TEEEEECTTSCEEEEE-TTTCCEEEEE-CCCC-EEEEEEE-TTEEEEEETT----------------------------
T ss_pred             -CEEEEEecCcEEEEEE-CCCCcEEeec-cCCC-CCCceEE-CCEEEEEcCC----------------------------
Confidence             3588876555 33333 2234432211 1111 2334454 6789998643                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                               +.+.++|+++|+..-.......   ...++....++.||+++. .+.+..++..+-
T Consensus       287 ---------g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~l~v~~~-~g~l~~~d~~tG  338 (376)
T 3q7m_A          287 ---------DRVMALTIDGGVTLWTQSDLLH---RLLTSPVLYNGNLVVGDS-EGYLHWINVEDG  338 (376)
T ss_dssp             ---------CCEEEEETTTCCEEEEECTTTT---SCCCCCEEETTEEEEECT-TSEEEEEETTTC
T ss_pred             ---------CeEEEEECCCCcEEEeecccCC---CcccCCEEECCEEEEEeC-CCeEEEEECCCC
Confidence                     3589999878887655542222   223344456899999986 567888886543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.84  E-value=4.8e-08  Score=90.28  Aligned_cols=139  Identities=14%  Similarity=0.154  Sum_probs=97.1

Q ss_pred             CCCceEEEeeC-CC--eEEEEEcCC-----EEEEEEcCCCeEEEEee----cCCccccceEEcCCCCEEEEeCC------
Q 018705           52 NHPEDVSVVVS-KG--ALYTATRDG-----WVKYFILHNETLVNWKH----IDSQSLLGLTTTKDGGVILCDNE------  113 (351)
Q Consensus        52 ~~pe~i~~d~~-~g--~lyv~~~~g-----~I~~~d~~~g~~~~~~~----~~~~p~~gl~~d~~G~L~v~d~~------  113 (351)
                      ..|-+|.+.++ ++  +||+..+..     .|++++..++..+....    ...+|+ .++++++|++|+++..      
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pN-D~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEEEEEESCSCSSHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCc-eEEEeCCCCEEecCCcEeCCcc
Confidence            47889988652 33  688876532     47888886555544332    235689 9999999999998751      


Q ss_pred             ------------CCeEEEcCCCeEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC-C
Q 018705          114 ------------KGLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-L  179 (351)
Q Consensus       114 ------------~gl~~~~~~g~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~  179 (351)
                                  ..++++++...+.+.+....||+|+++||| .+|++++.                 .++|++|+.+ .
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~-----------------~~~I~~~~~~~~  253 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL-----------------AHKIHVYEKHAN  253 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTT
T ss_pred             cccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCC-----------------CCeEEEEEECCC
Confidence                        357888763355566666899999999998 79999976                 3578888743 2


Q ss_pred             CeEEE--eecCccccceEEEcC-CCCEEEEEec
Q 018705          180 KETTV--LHEGFYFANGIALSK-NEDFVVVCES  209 (351)
Q Consensus       180 ~~~~~--~~~~~~~~ngi~~~~-dg~~lyv~~~  209 (351)
                      +++..  .......|+|+++++ +|+ +|++..
T Consensus       254 g~l~~~~~~~~~g~PDGi~vD~e~G~-lwva~~  285 (355)
T 3sre_A          254 WTLTPLRVLSFDTLVDNISVDPVTGD-LWVGCH  285 (355)
T ss_dssp             SCEEEEEEEECSSEEEEEEECTTTCC-EEEEEE
T ss_pred             CcEecCEEEeCCCCCceEEEeCCCCc-EEEEec
Confidence            43321  123346799999999 598 999653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.84  E-value=4.7e-06  Score=74.86  Aligned_cols=230  Identities=10%  Similarity=0.051  Sum_probs=141.2

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC---eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG---VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g---~~~l  127 (351)
                      -.++++.+++..+.++..|+.|..||..+++. ..+........ .+++.+++.++++....+.++++  .++   ...+
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            35778887788899999999999999887765 34444445566 89999999877766666777776  233   2334


Q ss_pred             cCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee-cCccccceEEEcC--CCC
Q 018705          128 VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH-EGFYFANGIALSK--NED  202 (351)
Q Consensus       128 ~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~-~~~~~~ngi~~~~--dg~  202 (351)
                      ......+++++++| ++.++++.+.                 ++.|..||..+++.. .+. ......+.+.+++  ++.
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC
Confidence            43346788999998 5677776554                 467888887544321 111 1122345566765  666


Q ss_pred             EEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          203 FVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      .|..+..++  ++|  +...++. ..+. ........+++.+++.+.++...                            
T Consensus       200 ~l~s~s~D~~i~iW--d~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~----------------------------  248 (304)
T 2ynn_A          200 YMITASDDLTIKIW--DYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSE----------------------------  248 (304)
T ss_dssp             EEEEEETTSEEEEE--ETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEET----------------------------
T ss_pred             EEEEEcCCCeEEEE--eCCCCccceeeC-CCCCCEEEEEECCCCCEEEEEcC----------------------------
Confidence            666666555  555  2222222 2222 22222344678888887666543                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                              .+.|..+|.++++.+..+..+.+    .+.++..+  ++..|+.+...+++..+.+...
T Consensus       249 --------Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~  303 (304)
T 2ynn_A          249 --------DGTLKIWNSSTYKVEKTLNVGLE----RSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (304)
T ss_dssp             --------TSCEEEEETTTCCEEEEECCSSS----SEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred             --------CCeEEEEECCCCceeeeccCCCc----cEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence                    23467778867788877754332    34455533  3344455555788888887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.83  E-value=2.3e-06  Score=79.62  Aligned_cols=235  Identities=10%  Similarity=0.114  Sum_probs=145.8

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCC----C-eEEEEeecCCccccceEEcCC-CCEEEEeCCCCeEEEcC--CCe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHN----E-TLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVTE--EGV  124 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~----g-~~~~~~~~~~~p~~gl~~d~~-G~L~v~d~~~gl~~~~~--~g~  124 (351)
                      ...++++++++..++++..+|.|..|+..+    . ....+........ .+++.++ ++++++....+.+++..  ++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            345889998778888999999999999865    1 3333333444566 8999988 77666665666666652  222


Q ss_pred             ------EEecC-----CCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----
Q 018705          125 ------EAIVP-----DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----  188 (351)
Q Consensus       125 ------~~l~~-----~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----  188 (351)
                            ..+..     ....+.+++++++ +.++++.+.                 +|.|..||..+++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEeccccc
Confidence                  22211     1257889999998 577777654                 46799999887765443332    


Q ss_pred             ---ccccceEEEcCCCC-EEEEEecc----e-eEE-eecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEecCCchhh
Q 018705          189 ---FYFANGIALSKNED-FVVVCESW----K-RYW-LKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGV  257 (351)
Q Consensus       189 ---~~~~ngi~~~~dg~-~lyv~~~~----~-~~~-i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~~~~~~~  257 (351)
                         ......++++|++. .++.+..+    . ++| +.... .....+.....+....+++++ +|++.++...      
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------  283 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------  283 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEES------
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeC------
Confidence               34567899999974 55555544    3 344 22110 111111101122345578887 7776666543      


Q ss_pred             hhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC-C-EEEEEecCCCe
Q 018705          258 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-G-NLYLASLQSNF  335 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~ig~~~~~~  335 (351)
                                                    .+.|..+|..+++.+..+..+.+    .++++.... + .+++.....+.
T Consensus       284 ------------------------------dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          284 ------------------------------DNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             ------------------------------SSEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSE
T ss_pred             ------------------------------CCCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCc
Confidence                                          23577778767888888876443    355565543 3 45555555788


Q ss_pred             EEEEeCCCCCC
Q 018705          336 IGILPLDGPEP  346 (351)
Q Consensus       336 i~~~~~~~~~~  346 (351)
                      |..+++....+
T Consensus       330 i~iw~~~~~~~  340 (416)
T 2pm9_A          330 IEVQTLQNLTN  340 (416)
T ss_dssp             EEEEESCCCCC
T ss_pred             EEEEEccCCCC
Confidence            99999877643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.83  E-value=2e-07  Score=84.53  Aligned_cols=177  Identities=10%  Similarity=0.031  Sum_probs=110.9

Q ss_pred             CCceEEE---eeCCCeEEEEEc--------------CCEEEEEEcC---CCeEEEEeec--------------CCccccc
Q 018705           53 HPEDVSV---VVSKGALYTATR--------------DGWVKYFILH---NETLVNWKHI--------------DSQSLLG   98 (351)
Q Consensus        53 ~pe~i~~---d~~~g~lyv~~~--------------~g~I~~~d~~---~g~~~~~~~~--------------~~~p~~g   98 (351)
                      .|.+|.+   |++ ++||+...              +..++++|+.   +++.......              ...++ +
T Consensus        64 ~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-D  141 (334)
T 2p9w_A           64 QMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-Q  141 (334)
T ss_dssp             EEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-E
T ss_pred             eeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-e
Confidence            4679999   754 88887432              5789999987   5655332211              12377 9


Q ss_pred             eEEcCCCCEEEEeCC--CCeEEEcCCC--eEEecCC------CCCcccEEEccCCcEEEEeCCCccCCcccccccccccC
Q 018705           99 LTTTKDGGVILCDNE--KGLLKVTEEG--VEAIVPD------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        99 l~~d~~G~L~v~d~~--~gl~~~~~~g--~~~l~~~------~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      +++|++|+.||++..  ..|++++++|  ...+...      ...+|+|++.|||++++....                 
T Consensus       142 vavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-----------------  204 (334)
T 2p9w_A          142 SAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-----------------  204 (334)
T ss_dssp             EEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-----------------
T ss_pred             eEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-----------------
Confidence            999999999997643  4599999988  4433211      146899999999965544432                 


Q ss_pred             CceEEEEeCCCCeEE--Eeec------CccccceE-EEcCCCCEEEEEecce-eEEeecC-CCCceeEEeccCCC--CCC
Q 018705          169 YGQLRKYDPKLKETT--VLHE------GFYFANGI-ALSKNEDFVVVCESWK-RYWLKGD-RAGILDAFIENLPG--GPD  235 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~--~~~~------~~~~~ngi-~~~~dg~~lyv~~~~~-~~~i~~~-~~~~~~~~~~~~~g--~pd  235 (351)
                      .|+|++||.++ ...  .-..      .+..++|| +...+|+.|+|++..+ ++.+.+. .-.+.+.... .++  .+.
T Consensus       205 ~g~L~~fD~~~-pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~-~~~~~~~~  282 (334)
T 2p9w_A          205 PRALTAFDVSK-PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKT-KRSELQNS  282 (334)
T ss_dssp             SSSEEEEECSS-SSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEE-ECGGGGSS
T ss_pred             CCeEEEEcCCC-CcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcceeEEeee-ecCccccC
Confidence            36899999763 222  1111      35678896 5556888778887554 4444321 1222222211 121  156


Q ss_pred             ceEEC------CCCCEEEEEe
Q 018705          236 NINLA------PDGSFWIGLI  250 (351)
Q Consensus       236 ~i~~d------~~G~lwva~~  250 (351)
                      +++.+      .++++|+...
T Consensus       283 g~tt~t~~~~~~~~~iYvv~~  303 (334)
T 2p9w_A          283 GFTAVADYYQGSEQGLYAVSA  303 (334)
T ss_dssp             CEEEEEEEEETTEEEEEEEEC
T ss_pred             ceeEEEEeccccCCeEEEEee
Confidence            77665      6788999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.83  E-value=1e-06  Score=88.94  Aligned_cols=138  Identities=10%  Similarity=0.003  Sum_probs=91.5

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CC-----EEEEEEcCCCeEEEEeecC-C------------------------ccccceE
Q 018705           52 NHPEDVSVVVSKGALYTATR-DG-----WVKYFILHNETLVNWKHID-S------------------------QSLLGLT  100 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g-----~I~~~d~~~g~~~~~~~~~-~------------------------~p~~gl~  100 (351)
                      ..+.+++++|++..++.+.. ++     .|+.+|..+++.+...... .                        ... .++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            35678999987777877776 77     8999999888765543221 1                        145 899


Q ss_pred             EcCCCCEEEEeCCCCeEEEcC-CC----eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEE
Q 018705          101 TTKDGGVILCDNEKGLLKVTE-EG----VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (351)
Q Consensus       101 ~d~~G~L~v~d~~~gl~~~~~-~g----~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~  174 (351)
                      +++||+.++......++.++. ++    .+.+......+.+++++|||+ |.++..                   +.|+.
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-------------------~~i~~  176 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-------------------RNLWV  176 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-------------------TEEEE
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-------------------CcEEE
Confidence            999997544333355666663 22    122222225678899999996 444432                   37999


Q ss_pred             EeCCCCeEEEeecCccc-----------------cceEEEcCCCCEEEEEec
Q 018705          175 YDPKLKETTVLHEGFYF-----------------ANGIALSKNEDFVVVCES  209 (351)
Q Consensus       175 ~d~~~~~~~~~~~~~~~-----------------~ngi~~~~dg~~lyv~~~  209 (351)
                      +|.++++...+......                 +.++++||||+.|+++..
T Consensus       177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             EecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            99888877655432221                 467999999998877643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.82  E-value=1.4e-07  Score=90.51  Aligned_cols=163  Identities=13%  Similarity=0.212  Sum_probs=103.8

Q ss_pred             ceEecCCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeE-EEEe-------ec-----CCccccceEEcCC----
Q 018705           43 LTKLGEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-VNWK-------HI-----DSQSLLGLTTTKD----  104 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~-~~~~-------~~-----~~~p~~gl~~d~~----  104 (351)
                      +++++.+ +..|.+|++.|++ +++||+...|+|++++..+... +.+.       ..     ..-+. ||+++++    
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCC
Confidence            4667766 8899999999765 3799999999999998632211 1111       10     23356 8999985    


Q ss_pred             CCEEEEeCC-------------CCeEEEcC-C--------C-eEEecC-----CCCCcccEEEccCCcEEEEeCCCccCC
Q 018705          105 GGVILCDNE-------------KGLLKVTE-E--------G-VEAIVP-----DASFTNDVIAASDGTLYFTVASTKYTP  156 (351)
Q Consensus       105 G~L~v~d~~-------------~gl~~~~~-~--------g-~~~l~~-----~~~~~n~l~~d~dG~ly~t~~~~~~~~  156 (351)
                      +.|||+-..             ..|.++.. +        . .+++..     .......|+++|||.|||+........
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~  163 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITL  163 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCH
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCC
Confidence            889997431             14544431 1        1 122211     114567799999999999986421100


Q ss_pred             --cccccccccccCCceEEEEeCCCC--------------------eEEEeecCccccceEEEcCC-----CC-EEEEEe
Q 018705          157 --TDFYKDMAEGKPYGQLRKYDPKLK--------------------ETTVLHEGFYFANGIALSKN-----ED-FVVVCE  208 (351)
Q Consensus       157 --~~~~~~~~~~~~~g~l~~~d~~~~--------------------~~~~~~~~~~~~ngi~~~~d-----g~-~lyv~~  208 (351)
                        .....+  .....|.|+|+|+++.                    +.++++.++.+|.|++++++     |+ ++|.+|
T Consensus       164 ~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D  241 (463)
T 2wg3_C          164 DDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD  241 (463)
T ss_dssp             HHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEEC
T ss_pred             CccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecc
Confidence              000000  1133688999999853                    24577888999999999997     44 577788


Q ss_pred             c
Q 018705          209 S  209 (351)
Q Consensus       209 ~  209 (351)
                      .
T Consensus       242 ~  242 (463)
T 2wg3_C          242 S  242 (463)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.81  E-value=7.7e-06  Score=72.65  Aligned_cols=228  Identities=11%  Similarity=0.134  Sum_probs=137.7

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEc---C--CC-
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---E--EG-  123 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~--~g-  123 (351)
                      -..-.++++ ++++.++++..+|.|..||..+++.... ........ .++++++++++++....+.+++.   .  .+ 
T Consensus        18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTMINGVPLFATSGED   95 (313)
T ss_dssp             SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEE-EEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred             CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEE-EEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence            345568888 6888999999999999999877765433 33345556 89999999876655555555533   2  12 


Q ss_pred             -eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC-CC
Q 018705          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK-NE  201 (351)
Q Consensus       124 -~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~-dg  201 (351)
                       ...+......+.++.+  ++.+.++.+.                 +|.|..||.. .....+.........+++.+ ++
T Consensus        96 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~-----------------d~~i~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSF--QDGVVISGSW-----------------DKTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             C-CEECCCSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEETT-EEEEEEECCSSCEEEEEEEETTT
T ss_pred             cccchhhcccCEEEEEe--cCCEEEEEeC-----------------CCCEEEEcCC-cEEEecccCCCceeEEEEccCCC
Confidence             3333333355666666  4545554433                 4678888832 23333333344556778877 78


Q ss_pred             CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhc
Q 018705          202 DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  279 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
                      +.++.+..++  ++|-  . ......+..........+++.++|.+..+...                            
T Consensus       156 ~~l~~~~~d~~i~i~d--~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d----------------------------  204 (313)
T 3odt_A          156 NKFLTASADKTIKLWQ--N-DKVIKTFSGIHNDVVRHLAVVDDGHFISCSND----------------------------  204 (313)
T ss_dssp             TEEEEEETTSCEEEEE--T-TEEEEEECSSCSSCEEEEEEEETTEEEEEETT----------------------------
T ss_pred             CEEEEEECCCCEEEEe--c-CceEEEEeccCcccEEEEEEcCCCeEEEccCC----------------------------
Confidence            8777776666  4552  1 11122222112333456778888885444322                            


Q ss_pred             ccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705          280 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       280 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                               +.+..+|..+++.+..+..+.+    .++++... +++|+.++. .+.|..++++...
T Consensus       205 ---------g~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~  257 (313)
T 3odt_A          205 ---------GLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCGE-DRTVRIWSKENGS  257 (313)
T ss_dssp             ---------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEET-TSEEEEECTTTCC
T ss_pred             ---------CeEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEec-CCEEEEEECCCCc
Confidence                     3577778756787777765443    46666655 346666654 6778888876654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.81  E-value=7.9e-06  Score=73.91  Aligned_cols=176  Identities=9%  Similarity=0.110  Sum_probs=113.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEec
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV  128 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~  128 (351)
                      .-.++++.+++..+.++..|+.|..||..+++. ..+........ .+++++++.++++....+.++++. .+  ...+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            445788997777888999999999999988865 34444445566 899999998877766667777763 44  44444


Q ss_pred             CCCCCcccEEEccC------CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCC
Q 018705          129 PDASFTNDVIAASD------GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (351)
Q Consensus       129 ~~~~~~n~l~~d~d------G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg  201 (351)
                      .....+..+.+.++      +...++.+.                 ++.|..||..+++..... ......+.++++|++
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGN-----------------DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG  208 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEET-----------------TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeC-----------------CCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence            33355667777664      334444433                 567889998776654433 233456789999999


Q ss_pred             CEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          202 DFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +.|..+..++  ++|-.  ..++. ..+.  .+.....++++++|.+.++..
T Consensus       209 ~~l~s~~~dg~i~iwd~--~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNL--AAKKAMYTLS--AQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             SEEEEEETTCEEEEEET--TTTEEEEEEE--CCSCEEEEEECSSSSEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEC--CCCcEEEEec--CCCcEEEEEEcCCCCEEEEEc
Confidence            9776666666  55522  22222 1221  122235678999997665543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.79  E-value=1.3e-05  Score=74.70  Aligned_cols=178  Identities=12%  Similarity=0.078  Sum_probs=110.9

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ecC------------------CccccceEEcCCCCEEEEeCC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HID------------------SQSLLGLTTTKDGGVILCDNE  113 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~~------------------~~p~~gl~~d~~G~L~v~d~~  113 (351)
                      .-.+++++|++..+.++. ++.+..|+..+|+..... ...                  .... .+++.++|+++++...
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAE  143 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcC
Confidence            346899997666666654 677888888777653221 100                  0134 7899999987776656


Q ss_pred             CCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc
Q 018705          114 KGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF  189 (351)
Q Consensus       114 ~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  189 (351)
                      .+.+++.  .++  ...+......++++++.++|...++.+.                 ++.+..||..+++........
T Consensus       144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~  206 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTLSIE  206 (393)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeEEEEEcC
Confidence            6666665  245  4445444467889999999987776654                 568999998888765444333


Q ss_pred             cccceEEEcC-CCCEEEEEecce--eEEeecCCCCce-eEEec------cCCCCCCceEECCCCCEEEEEec
Q 018705          190 YFANGIALSK-NEDFVVVCESWK--RYWLKGDRAGIL-DAFIE------NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       190 ~~~ngi~~~~-dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~------~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .....++++| +++.+..+..++  ++|-.  ..+.. ..+..      ........++++++|.+.++...
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            4566789998 888666666666  55521  12221 11110      11112345788999987766543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.79  E-value=1e-06  Score=89.03  Aligned_cols=192  Identities=13%  Similarity=0.083  Sum_probs=111.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCC---eEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEec
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNE---TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIV  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g---~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~  128 (351)
                      ..+++++|++..++++.. +.|+.+|..++   +.+.+......+. .+++++||+.++......++.++. ++ ...+.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            468899987777777665 88999999777   6655544445566 899999997544433446777774 55 44443


Q ss_pred             CCCC-----------------CcccEEEccCCc-EEEEeCC-CccCC-------------ccccccccccc--CCceEEE
Q 018705          129 PDAS-----------------FTNDVIAASDGT-LYFTVAS-TKYTP-------------TDFYKDMAEGK--PYGQLRK  174 (351)
Q Consensus       129 ~~~~-----------------~~n~l~~d~dG~-ly~t~~~-~~~~~-------------~~~~~~~~~~~--~~g~l~~  174 (351)
                      ....                 .+.+++++|||+ |+++... .....             ....+. ..+.  ....|+.
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~-~~g~~~~~~~l~~  267 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP-AAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC-BTTSCCCEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC-CCCCCCCeeEEEE
Confidence            2211                 257899999995 6655321 00000             000000 0011  1126889


Q ss_pred             EeCCC-CeEEEeec---CccccceEEEcCCCCEEEEEecc----e-eEEeecCCCCceeEEec-cCCC---CCCceEECC
Q 018705          175 YDPKL-KETTVLHE---GFYFANGIALSKNEDFVVVCESW----K-RYWLKGDRAGILDAFIE-NLPG---GPDNINLAP  241 (351)
Q Consensus       175 ~d~~~-~~~~~~~~---~~~~~ngi~~~~dg~~lyv~~~~----~-~~~i~~~~~~~~~~~~~-~~~g---~pd~i~~d~  241 (351)
                      +|.++ ++.+.+..   .......+++ |||+.|+++...    . .+++-+...++...... ...+   ....+++++
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99887 77655432   2234567899 999988876542    1 44444433344332222 1111   124688999


Q ss_pred             CCCEEEEE
Q 018705          242 DGSFWIGL  249 (351)
Q Consensus       242 ~G~lwva~  249 (351)
                      +|+++++.
T Consensus       347 dg~~~~~~  354 (741)
T 2ecf_A          347 DGSILWSS  354 (741)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEe
Confidence            99855543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.78  E-value=2.4e-06  Score=86.96  Aligned_cols=179  Identities=8%  Similarity=0.021  Sum_probs=113.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC---eEE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG---VEA  126 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g---~~~  126 (351)
                      ...+++|+|++..+.++..+|.|..|+..+++.. .+........ .+++.++|..+++....+.+++.  .++   ...
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            4568999988888999999999999998777653 3433445566 89999999765554455655555  232   344


Q ss_pred             ecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecC-ccccceEEEcC--CC
Q 018705          127 IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEG-FYFANGIALSK--NE  201 (351)
Q Consensus       127 l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~-~~~~ngi~~~~--dg  201 (351)
                      +......+.+++++| +|..+++.+.                 +|.|..||..+++... +... ....+.+++++  ++
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence            443336788999999 7766666543                 4678899876554322 2222 24567899998  88


Q ss_pred             CEEEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          202 DFVVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       202 ~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ..++++..++.+.+-+...++. ..+. ...+....++++++|.+.++..
T Consensus       199 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          199 PYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             CEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            8777776666333222222222 2222 2222335578899998666544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.78  E-value=2.6e-05  Score=71.70  Aligned_cols=182  Identities=13%  Similarity=0.087  Sum_probs=116.0

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC---C--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE---E--  122 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~---~--  122 (351)
                      +.-..-.++++.+++..+.++..||.|..||..+++.. .+........ .+++.++|.++++....+.+++..   +  
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            43344568999987788999999999999998776553 3333344556 899999999888777766666541   1  


Q ss_pred             -C----eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEE
Q 018705          123 -G----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIA  196 (351)
Q Consensus       123 -g----~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~  196 (351)
                       +    ...+......+..+++.+++...++.+.                 ++.|..||..+++..... ........++
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-----------------DGTCALWDVESGQLLQSFHGHGADVLCLD  203 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence             1    2222222256788889999876666554                 568999998877654332 2233445677


Q ss_pred             EcC--CCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          197 LSK--NEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       197 ~~~--dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++  +++.++.+..++  ++|  +...++. ..+. ........+++.++|++.++...
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~w--d~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVW--DMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEE--ETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEeCCCCCEEEEEeCCCeEEEE--ECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeC
Confidence            766  566677776666  555  2222332 2222 22223456788999987776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.78  E-value=1.7e-05  Score=73.90  Aligned_cols=225  Identities=11%  Similarity=0.073  Sum_probs=132.1

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec--CCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP  129 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~  129 (351)
                      ++.++  ++.++++..+|.|..|+..+++.......  ..... .+++.++|+++++....|.+++.  .++  ...+..
T Consensus        98 ~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A           98 LLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVA-SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             CEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEE-EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence            45554  56788888999999999988876544332  34456 89999999766555445555555  344  555544


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-Ce-EEEeecCccccceEEEcCCCCEEEEE
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~-~~~~~~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      ....+.++++  ++.+.++.+.                 +|.|..||... +. ...+........+++++++++.++.+
T Consensus       175 ~~~~v~~~~~--~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          175 HQARVGCLSW--NRHVLSSGSR-----------------SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             CSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEE--CCCEEEEEcC-----------------CCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence            3356667776  4445555433                 56888898763 22 33333444567789999999977777


Q ss_pred             ecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCC
Q 018705          208 ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  284 (351)
Q Consensus       208 ~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
                      ..++  ++|  +...+..........+....+++.++|. ++++...                                 
T Consensus       236 ~~d~~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g---------------------------------  280 (401)
T 4aez_A          236 GNDNVVQIW--DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG---------------------------------  280 (401)
T ss_dssp             ETTSCEEEE--ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC---------------------------------
T ss_pred             eCCCeEEEc--cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC---------------------------------
Confidence            7666  444  2222222211212333456788998775 5554321                                 


Q ss_pred             CCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEE-ecCCCeEEEEeCCC
Q 018705          285 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLA-SLQSNFIGILPLDG  343 (351)
Q Consensus       285 ~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig-~~~~~~i~~~~~~~  343 (351)
                       ...+.+..+|..+++.+..+...     ..++++... ++ .|+.. ....+.|..++++.
T Consensus       281 -s~d~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          281 -TMDKQIHFWNAATGARVNTVDAG-----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             -TTTCEEEEEETTTCCEEEEEECS-----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             -CCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence             12345677776566666666432     135555543 23 34442 22356676666554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.75  E-value=6.8e-06  Score=80.45  Aligned_cols=238  Identities=12%  Similarity=0.094  Sum_probs=141.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCC----e-EEEEeecCCc-cccceEEcC--CCCEEEEeCCCCeEEEcC-C
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE----T-LVNWKHIDSQ-SLLGLTTTK--DGGVILCDNEKGLLKVTE-E  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g----~-~~~~~~~~~~-p~~gl~~d~--~G~L~v~d~~~gl~~~~~-~  122 (351)
                      ..+.+++++|++..+.++. ++.|..|+..++    + ...+...... .. .+++++  +|+++++....+.++++. .
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~   96 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWT   96 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence            4567899997777777766 788999998777    3 3444444455 66 899999  998766655566666552 1


Q ss_pred             ---------C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccc
Q 018705          123 ---------G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF  191 (351)
Q Consensus       123 ---------g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  191 (351)
                               .  ...+......+.+++++++|...++....+             ...+.|+.||. ......+......
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-------------~~~~~v~~~d~-~~~~~~~~~~~~~  162 (615)
T 1pgu_A           97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR-------------DNFGVFISWDS-GNSLGEVSGHSQR  162 (615)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-------------SCSEEEEETTT-CCEEEECCSCSSC
T ss_pred             CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC-------------CCccEEEEEEC-CCcceeeecCCcc
Confidence                     1  233332336788999999997665544311             11357888883 2344444444456


Q ss_pred             cceEEEcCCCC-EEEEEecce--eEEeecCCCCceeEEeccCCC---CCCceEECCC-CCEEEEEecCCchhhhhhhcCh
Q 018705          192 ANGIALSKNED-FVVVCESWK--RYWLKGDRAGILDAFIENLPG---GPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       192 ~ngi~~~~dg~-~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g---~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      ...++++|+++ .++.+..++  ++|  +...++.........+   ....++++++ |++.++...             
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------  227 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-------------  227 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEE--ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-------------
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEE--eCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-------------
Confidence            77899999997 565565555  444  2222222111112222   2345788998 886665432             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECC-EEEEEecCCCeEEEEeCCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDG-NLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g-~L~ig~~~~~~i~~~~~~~  343 (351)
                                             .+.|..+|..+++.+..+..+.......+.++...++ .|+.++ ..+.|..++++.
T Consensus       228 -----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~wd~~~  283 (615)
T 1pgu_A          228 -----------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDVTT  283 (615)
T ss_dssp             -----------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEETTT
T ss_pred             -----------------------CCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEc-CCCcEEEEECCC
Confidence                                   1347777865788777772100011224566655344 444444 467788888765


Q ss_pred             C
Q 018705          344 P  344 (351)
Q Consensus       344 ~  344 (351)
                      .
T Consensus       284 ~  284 (615)
T 1pgu_A          284 S  284 (615)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.75  E-value=1.4e-06  Score=80.48  Aligned_cols=231  Identities=14%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE---Ee--ecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---WK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V  124 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~---~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~  124 (351)
                      -.+++|.| ++.+.++..+|.|..||..+++...   +.  ....... .+++.++|+.+++....+.+++.  .++  .
T Consensus        97 V~~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B           97 VTDVAWVS-EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK-TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             EEEEEEET-TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEcC-CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            45789994 6788888999999999876664321   11  1123455 89999999877765556666665  355  4


Q ss_pred             EEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec---CccccceEEEcCC
Q 018705          125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GFYFANGIALSKN  200 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~ngi~~~~d  200 (351)
                      ..+......++++++.+++ .++++...                 +|.|..||..+++......   ....+..++++|+
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~-----------------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGE-----------------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEET-----------------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeecc-----------------CCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            4454444678899999887 46665543                 4678888877665332221   1234678999998


Q ss_pred             CC-EEEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccch
Q 018705          201 ED-FVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  276 (351)
Q Consensus       201 g~-~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      +. .+..+..++  ++|  +...++ ...+. ...+....+++.++|.-++++..                         
T Consensus       238 ~~~~la~g~~d~~i~~w--d~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs-------------------------  289 (357)
T 4g56_B          238 KDDTFACGDETGNVSLV--NIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASIS-------------------------  289 (357)
T ss_dssp             STTEEEEEESSSCEEEE--ESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEE-------------------------
T ss_pred             ccceEEEeecccceeEE--ECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEe-------------------------
Confidence            65 444455444  444  212222 22222 11222345788888753443322                         


Q ss_pred             hhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          277 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       277 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                                ..+.|..+|.++++.+..+ .+.    ..++++...  ++.++++....+.|..++++....
T Consensus       290 ----------~D~~i~iwd~~~~~~~~~~-~H~----~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          290 ----------EDCTVAVLDADFSEVFRDL-SHR----DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             ----------TTSCEEEECTTSCEEEEEC-CCS----SCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             ----------CCCEEEEEECCCCcEeEEC-CCC----CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence                      1134667787566665544 222    357777764  455555444477799999887654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.74  E-value=7e-06  Score=72.94  Aligned_cols=229  Identities=15%  Similarity=0.144  Sum_probs=138.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe----EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~----~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~  125 (351)
                      ....++++++++..++++..+|.|..|+..+..    ...+........ .+.+  +++++++....+.+++...+  ..
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~--~~~~l~~~~~d~~i~~~d~~~~~~  136 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSF--QDGVVISGSWDKTAKVWKEGSLVY  136 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEe--cCCEEEEEeCCCCEEEEcCCcEEE
Confidence            345688999878889999999999988864432    223322333445 7777  35454444445666655444  44


Q ss_pred             EecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCE
Q 018705          126 AIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDF  203 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~  203 (351)
                      .+......+.++++.+ ++...++.+.                 +|.|..||.. .....+.. .......+++++++. 
T Consensus       137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-  197 (313)
T 3odt_A          137 NLQAHNASVWDAKVVSFSENKFLTASA-----------------DKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-  197 (313)
T ss_dssp             EEECCSSCEEEEEEEETTTTEEEEEET-----------------TSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-
T ss_pred             ecccCCCceeEEEEccCCCCEEEEEEC-----------------CCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-
Confidence            4444335677788777 7766665543                 4678888843 22333332 344567899999997 


Q ss_pred             EEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          204 VVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       204 lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      ++.+..++.+.+-+...++. ..+. ...+....++++++|.+..+...                               
T Consensus       198 ~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d-------------------------------  245 (313)
T 3odt_A          198 FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNGDIVSCGED-------------------------------  245 (313)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSCEEEEETT-------------------------------
T ss_pred             EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCCCEEEEecC-------------------------------
Confidence            66666655332222222222 2222 22333456788999975555322                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                            +.|..+|..+++.+..+..+.+    .++++... ++++..++. .+.|..+++.+..
T Consensus       246 ------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~-dg~i~iw~~~~~~  298 (313)
T 3odt_A          246 ------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGSS-DNLVRIFSQEKSR  298 (313)
T ss_dssp             ------SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEET-TSCEEEEESCGGG
T ss_pred             ------CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEeC-CCcEEEEeCCCCc
Confidence                  4677888767888888876543    46666654 456666554 7789999987654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.73  E-value=7.6e-08  Score=92.96  Aligned_cols=72  Identities=18%  Similarity=0.150  Sum_probs=55.4

Q ss_pred             CCCcccEEEccCCcEEE-EeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCCEEEEE
Q 018705          131 ASFTNDVIAASDGTLYF-TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       131 ~~~~n~l~~d~dG~ly~-t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~~lyv~  207 (351)
                      ++.|++|++|++|+||| ||..+  ...    ..+++.....||++++.+|+++.+...  ...|||++|+||+++|||+
T Consensus       475 fnsPDnL~fd~~G~LWf~TD~~~--~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          475 FNSPDGLGFDKAGRLWILTDGDS--SNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCEEEEEECTTCCEEEEECCCC--CCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEECCCCCEEEEeCCCc--Ccc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            37899999999999999 77642  111    112233455899999999999888754  4679999999999999997


Q ss_pred             e
Q 018705          208 E  208 (351)
Q Consensus       208 ~  208 (351)
                      -
T Consensus       549 v  549 (592)
T 4a9v_A          549 I  549 (592)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.72  E-value=1.7e-05  Score=79.68  Aligned_cols=178  Identities=10%  Similarity=0.079  Sum_probs=114.7

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      ..-.++++++++..+.++..||.|..||..+++.. .+........ .++++++|+.+++....+.++++. .+  ...+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            34568899977778889999999999998777653 3444445566 899999997666655667777763 33  3333


Q ss_pred             cCC----CCCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCC
Q 018705          128 VPD----ASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKN  200 (351)
Q Consensus       128 ~~~----~~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~d  200 (351)
                      ...    ...++++++++++  .+.++.+.                 ++.|..||..+++...... .....+.++++|+
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASW-----------------DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            221    1457888999886  35555443                 4678899987766544333 3345678999999


Q ss_pred             CCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          201 EDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ++.|..+..++  ++|-.  ..++. +..-........++++++|.+.++..
T Consensus       573 g~~l~sg~~Dg~i~iwd~--~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          573 GSLCASGGKDGVVLLWDL--AEGKK-LYSLEANSVIHALCFSPNRYWLCAAT  621 (694)
T ss_dssp             SSEEEEEETTSBCEEEET--TTTEE-EECCBCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEC--CCCce-EEEecCCCcEEEEEEcCCCcEEEEEc
Confidence            99766666665  56622  22221 11111222345678888887666543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.71  E-value=6.5e-06  Score=76.05  Aligned_cols=245  Identities=11%  Similarity=-0.000  Sum_probs=140.1

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-------EEEEeecCCccccceEEcCC----C---CEEEE
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-------LVNWKHIDSQSLLGLTTTKD----G---GVILC  110 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-------~~~~~~~~~~p~~gl~~d~~----G---~L~v~  110 (351)
                      ....+.-..-.++++++  +.++++..+|.|..|+..+++       ...+........ .+++.++    |   +++++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEE
Confidence            33344334456889984  788999999999999987776       444444444456 8999988    8   76665


Q ss_pred             eCCCCeEEEc--CCC-e------EEecCC-----CCCcccEEEc----cCCcE-EEEeCCCccCCcccccccccccCCce
Q 018705          111 DNEKGLLKVT--EEG-V------EAIVPD-----ASFTNDVIAA----SDGTL-YFTVASTKYTPTDFYKDMAEGKPYGQ  171 (351)
Q Consensus       111 d~~~gl~~~~--~~g-~------~~l~~~-----~~~~n~l~~d----~dG~l-y~t~~~~~~~~~~~~~~~~~~~~~g~  171 (351)
                      ....+.+++.  .++ .      ..+...     ...+.++++.    ++|.. +++.+.                 +|.
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------------dg~  149 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----------------KGT  149 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----------------TSC
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-----------------CCc
Confidence            4445544444  122 2      223222     2568889999    88876 665543                 356


Q ss_pred             EEEEeCCC------Ce-EE-----Eee-------cCccccceEEEcCCCCEEEEEecceeEEeecCCCCce-eEEecc--
Q 018705          172 LRKYDPKL------KE-TT-----VLH-------EGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGIL-DAFIEN--  229 (351)
Q Consensus       172 l~~~d~~~------~~-~~-----~~~-------~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~--  229 (351)
                      |..||..+      ++ +.     .+.       ........+++++++ .++++..++.+.+-+...++. ..+. .  
T Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~  227 (397)
T 1sq9_A          150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQH  227 (397)
T ss_dssp             EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC
T ss_pred             EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccc
Confidence            77776544      21 11     221       123456789999999 777776655322222222222 2222 2  


Q ss_pred             -C---CCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705          230 -L---PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF  305 (351)
Q Consensus       230 -~---~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~  305 (351)
                       .   ......++++++|++.++....                                 ...+.|..+|..+++.+..+
T Consensus       228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------------~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          228 SMINNSNSIRSVKFSPQGSLLAIAHDS---------------------------------NSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEE---------------------------------TTEEEEEEEETTTCCEEEEE
T ss_pred             cccccCCccceEEECCCCCEEEEEecC---------------------------------CCCceEEEEECCCCccccee
Confidence             1   2334567889999866654321                                 01146777887577777777


Q ss_pred             ECCCC---------CcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCCC
Q 018705          306 NDPDA---------TYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       306 ~~~~g---------~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      ..+..         .....++++...  +..|+.++ ..+.|..++++..+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKE  324 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTE
T ss_pred             ccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCc
Confidence            54100         012346666654  33455554 46778888886543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.71  E-value=2.7e-06  Score=79.36  Aligned_cols=178  Identities=12%  Similarity=0.032  Sum_probs=111.2

Q ss_pred             CCceEEEee-CCCeEEEEEcCCEEEEEEcCCCe--------EEEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc--
Q 018705           53 HPEDVSVVV-SKGALYTATRDGWVKYFILHNET--------LVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--  120 (351)
Q Consensus        53 ~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--  120 (351)
                      ...+++++| ++..++++..||.|..|+..+++        ...+........ .+++.++| +++++....+.+++.  
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            446889997 66788899999999999987663        233333445566 89999998 566655455555555  


Q ss_pred             CCC--eEEe--cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCc--cccc
Q 018705          121 EEG--VEAI--VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF--YFAN  193 (351)
Q Consensus       121 ~~g--~~~l--~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~--~~~n  193 (351)
                      .++  ...+  ......+.+++++++|.++++.+.                 +|.|..||..+++..... ...  ..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTVVAEKDRPHEGTRPV  224 (402)
T ss_dssp             TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred             CCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCceeeeeccCCCCCcce
Confidence            355  4455  223367889999999976666543                 468999998877754433 222  2367


Q ss_pred             eEEEcCCCCEEEEE---ecceeEEeecCCCCc--eeEEeccCCCCCCceEECCCCCEEEE
Q 018705          194 GIALSKNEDFVVVC---ESWKRYWLKGDRAGI--LDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       194 gi~~~~dg~~lyv~---~~~~~~~i~~~~~~~--~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      .++++++++.++++   ..++.+.+-+...+.  ..............++++++|++.+.
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  284 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL  284 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE
Confidence            89999999866555   334422222211111  11221112223456788999985543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.71  E-value=5.7e-06  Score=76.59  Aligned_cols=243  Identities=13%  Similarity=0.063  Sum_probs=129.5

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEEc----------CCEEEEEEcCCCeEE-EEeec------CCccccceEEcCCC-
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLV-NWKHI------DSQSLLGLTTTKDG-  105 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~~----------~g~I~~~d~~~g~~~-~~~~~------~~~p~~gl~~d~~G-  105 (351)
                      ..+..+  ..| .++++|++..+|++..          ++.|..||..+++.. .+...      +..|. +++++++| 
T Consensus        45 ~~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~  120 (361)
T 2oiz_A           45 GMVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGK  120 (361)
T ss_dssp             EEEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSS
T ss_pred             EEecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCC
Confidence            345554  468 9999988889999863          466999998776653 33221      34689 99999999 


Q ss_pred             CEEEEeCC--CCeEEEcC-CC--eEE-ecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC
Q 018705          106 GVILCDNE--KGLLKVTE-EG--VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (351)
Q Consensus       106 ~L~v~d~~--~gl~~~~~-~g--~~~-l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  178 (351)
                      .||+++..  +.+..++. ++  +.. +...  ....+.+.|+| ..|++.+.                 +|.+..++.+
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~-----------------dg~~~~v~~~  181 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICG-----------------DGGLLTINLG  181 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEET-----------------TSSEEEEEEC
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECC-----------------CCcEEEEEEC
Confidence            48888753  34666663 44  333 3221  11123344444 34443322                 2333333221


Q ss_pred             -CCeEEE------eecCccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEe----------c--cCCCCCCceEE
Q 018705          179 -LKETTV------LHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFI----------E--NLPGGPDNINL  239 (351)
Q Consensus       179 -~~~~~~------~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~----------~--~~~g~pd~i~~  239 (351)
                       +++...      .......|-.+..+++++.+++....+.+.+.+..........          .  ..|+.+..+++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence             122220      1111122333444566655555444332222111111111100          0  01222334888


Q ss_pred             CCCC-CEEEEEe-cCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCccccee
Q 018705          240 APDG-SFWIGLI-KMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT  317 (351)
Q Consensus       240 d~~G-~lwva~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~  317 (351)
                      +++| ++|++.. ......                           .......|..+|.++++.+..+..+.      +.
T Consensus       262 ~~dg~~lyv~~~~~~~~~~---------------------------~~~~~~~v~viD~~t~~~v~~i~~~~------p~  308 (361)
T 2oiz_A          262 HRASGRMYVFMHPDGKEGT---------------------------HKFPAAEIWVMDTKTKQRVARIPGRD------AL  308 (361)
T ss_dssp             ETTTTEEEEEEESSCCTTC---------------------------TTCCCSEEEEEETTTTEEEEEEECTT------CC
T ss_pred             ecCCCeEEEEEccCCCccc---------------------------ccCCCceEEEEECCCCcEEEEEecCC------ee
Confidence            9885 5899865 210000                           00112468899998889998887532      34


Q ss_pred             EEEE--ECCEEEEEecCCCeEEEEeCCCC
Q 018705          318 SAAE--FDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       318 ~~~~--~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ++..  ++..||+++.  +.|.++++.+-
T Consensus       309 ~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          309 SMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             EEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            4444  4568998874  88999998765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.71  E-value=3.3e-06  Score=78.15  Aligned_cols=182  Identities=12%  Similarity=0.060  Sum_probs=115.8

Q ss_pred             CceEEEeeCCCeEEEEE--cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEec
Q 018705           54 PEDVSVVVSKGALYTAT--RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~--~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l~  128 (351)
                      ..+++++|++..+.+++  .++.|..||..+++............ .+++.++|+++++....++..++. ++  .....
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            34789998777777765  57889999998887644334455677 999999999888777777888874 55  22222


Q ss_pred             C--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-----eecCccccceEEEcCCC
Q 018705          129 P--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----LHEGFYFANGIALSKNE  201 (351)
Q Consensus       129 ~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~ngi~~~~dg  201 (351)
                      .  ....++.+++.|||...++.+...             .....++.++...+....     +.......+.++++|||
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKK-------------GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESS-------------SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCC-------------cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            1  125678899999998776654210             001135666654443322     22233446789999999


Q ss_pred             CEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++|..+..++  ++|-  ...++. ..+.....+....++++++|++.++...
T Consensus       282 ~~lasgs~D~~V~iwd--~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          282 ELAVLASNDNSIALVK--LKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             CEEEEEETTSCEEEEE--TTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             CceEEEcCCCEEEEEE--CCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            9777777666  5652  222332 2222222333456899999998887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.70  E-value=3.4e-05  Score=76.36  Aligned_cols=179  Identities=11%  Similarity=0.057  Sum_probs=112.5

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--E-EEEeecCCccccceEEcCCCCEEEEeCCC----CeEEEcCCC--
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET--L-VNWKHIDSQSLLGLTTTKDGGVILCDNEK----GLLKVTEEG--  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~----gl~~~~~~g--  123 (351)
                      .-.+++++|++..+.++..||.|..||..+++  . ..+....+... .++++++|+.+++....    +.+++...+  
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~-~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~  139 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGTS  139 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE-EEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence            34578999877788899999999999975442  2 23333344566 99999999866543321    345555544  


Q ss_pred             eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCC
Q 018705          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg  201 (351)
                      ...+......++++++.|++. ..++.+.                 ++.+..||..+++..... ..-...+.++++|||
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~-----------------D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeC-----------------CCeEEEEECCCCeEeeeeccccCceEEEEECCCC
Confidence            333433336789999999985 4555543                 467888887666543333 333457789999999


Q ss_pred             CEEEEEecce--eEEeecCCCCce-eEEec------cCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWK--RYWLKGDRAGIL-DAFIE------NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~-~~~~~------~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +.|..+..++  ++|-.  ..++. ..+..      ...+....++++++|.+.++...
T Consensus       203 ~~las~s~D~~i~lwd~--~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             SEEEEEETTSCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEECCCcEEEEEC--CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence            9666666665  66632  12222 12211      12223455789999987776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.69  E-value=2.9e-05  Score=72.39  Aligned_cols=234  Identities=9%  Similarity=0.039  Sum_probs=137.8

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--C-CC--eEE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-EG--VEA  126 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~-~g--~~~  126 (351)
                      ...++++++++..++++..+|.|..||..+++.. .+........ .++++  ++++++....+.+++.  . .+  ...
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEEC--CCEEEEEcCCCCEEEEecccCcceeeE
Confidence            3458899977778899999999999998777543 3333334455 77774  4455444445555554  2 23  444


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~ly  205 (351)
                      +......+.+++++++|.++++.+.                 ++.|..||..+++..... ........++++|++..++
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGN-----------------DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeC-----------------CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence            4444467889999999987776543                 467999998776654333 3344567899999887566


Q ss_pred             EEec---ceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          206 VCES---WKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       206 v~~~---~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      ++..   ++.+.+-+...++..... ...+....++++++|++.++...                               
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g-------------------------------  323 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHG-------------------------------  323 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEEC-------------------------------
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEee-------------------------------
Confidence            6543   333222222223322111 12233466788999987766432                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEE--EECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRD--FNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~--~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                         ...+.|..++..+++....  +..+.+    .+..+... ++.+.+.....+.|..+++.+.+
T Consensus       324 ---~~dg~i~v~~~~~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          324 ---FPDNNLSIWSYSSSGLTKQVDIPAHDT----RVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             ---TTTCEEEEEEEETTEEEEEEEEECCSS----CCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             ---cCCCcEEEEecCCccceeEEEecCCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence               1224566666534444433  333332    45666654 34433333446778888887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.69  E-value=3.9e-06  Score=77.55  Aligned_cols=181  Identities=8%  Similarity=0.042  Sum_probs=117.1

Q ss_pred             CCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEee---cCCccccceEEcC-CCCEEEEeCCCCeEEEc-CCC--
Q 018705           52 NHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTK-DGGVILCDNEKGLLKVT-EEG--  123 (351)
Q Consensus        52 ~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~---~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~-~~g--  123 (351)
                      ..-.++++++++ ..++++..+|.|..||..+++......   ...... .+++.+ +++++++....+.+++. ..+  
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            445689999766 688899999999999987766544322   334456 899998 56665555455666665 333  


Q ss_pred             eEEecCCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCC
Q 018705          124 VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN  200 (351)
Q Consensus       124 ~~~l~~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~d  200 (351)
                      ...+....   ..+.+++++++|.+.++.+.                 ++.|..||........+.........++++|+
T Consensus       153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             EEEEECCCCSSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTSCEEEEEECSSSCEEEEEECSS
T ss_pred             eEEEeccCCCCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCCCEEEEeccCCCcEEEEEECCC
Confidence            44443322   56889999999987766543                 56899999865555555544556788999999


Q ss_pred             CC-EEEEEecce--eEEe-ecCC-CCceeEEeccCCCCCCceEECC-CCCEEEEEec
Q 018705          201 ED-FVVVCESWK--RYWL-KGDR-AGILDAFIENLPGGPDNINLAP-DGSFWIGLIK  251 (351)
Q Consensus       201 g~-~lyv~~~~~--~~~i-~~~~-~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~~  251 (351)
                      ++ .++.+..++  ++|- .... .+...... ...+....+++++ +|++.++...
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            98 676666665  4442 2211 12221111 2233456678999 8886665543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.69  E-value=5.5e-06  Score=77.26  Aligned_cols=240  Identities=13%  Similarity=0.029  Sum_probs=140.3

Q ss_pred             CCceEEEeeCCCeEE-EEEcCCEEEEEEcCCC-eE----EEEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--CCC
Q 018705           53 HPEDVSVVVSKGALY-TATRDGWVKYFILHNE-TL----VNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g-~~----~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g  123 (351)
                      ....++++++...+. .+..+|.|..|+..+. +.    ..+........ .+++++ +++++++....+.++++  .++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVL-DIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEE-EEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEE-EEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345678874333232 2567899999997432 22    11222234456 899998 88877766566766665  222


Q ss_pred             ---------eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--c-Ccc
Q 018705          124 ---------VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--E-GFY  190 (351)
Q Consensus       124 ---------~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~-~~~  190 (351)
                               ...+......+.++++.++| +++++.+.                 +|.|..||..+++.....  . ...
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~  177 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----------------DNVILVWDVGTGAAVLTLGPDVHPD  177 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----------------TSCEEEEETTTTEEEEEECTTTCCS
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----------------CCEEEEEECCCCCccEEEecCCCCC
Confidence                     23333333678899999998 67777654                 467999998877665443  2 234


Q ss_pred             ccceEEEcCCCCEEEEEecceeEEeecCCCCce-eEEeccCCC-CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHH
Q 018705          191 FANGIALSKNEDFVVVCESWKRYWLKGDRAGIL-DAFIENLPG-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWE  268 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g-~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~  268 (351)
                      ....++++++++.++.+..++.+.+-+...++. ..+.....+ .+..+.+.++|++.++....                
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~----------------  241 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR----------------  241 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT----------------
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC----------------
Confidence            567899999999777776666333223222332 222112222 25668889999876665321                


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEECCCCeE-EEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCCC
Q 018705          269 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI-IRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                                       ...+.|..+|..+++. +.......   ...+..+...  +..|++++...+.|..+++.+.+
T Consensus       242 -----------------~~d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 -----------------MSERQVALWDTKHLEEPLSLQELDT---SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             -----------------TCCEEEEEEETTBCSSCSEEEECCC---CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             -----------------CCCceEEEEcCccccCCceEEeccC---CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence                             1234677777733332 22222111   1235555544  35677666557778888888776


Q ss_pred             C
Q 018705          346 P  346 (351)
Q Consensus       346 ~  346 (351)
                      |
T Consensus       302 ~  302 (402)
T 2aq5_A          302 P  302 (402)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.68  E-value=9e-06  Score=81.70  Aligned_cols=180  Identities=15%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             CCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCC-----eE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--C
Q 018705           52 NHPEDVSVVVSK-GALYTATRDGWVKYFILHNE-----TL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E  122 (351)
Q Consensus        52 ~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g-----~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~  122 (351)
                      ..-.++++.+++ ..|.++..||.|..|+..++     .. ..+........ .+++.++|++.++....+.++++.  +
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd~~~  461 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWDLAA  461 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            344577887554 46778899999999987543     11 23333334456 899999998877766677777773  5


Q ss_pred             C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----ccccceEE
Q 018705          123 G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FYFANGIA  196 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----~~~~ngi~  196 (351)
                      +  ...+......+.+++++++|+..++.+.                 ++.|..||..+.....+...    .....+++
T Consensus       462 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-----------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred             CcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-----------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence            5  4455444467889999999987777654                 46788888754433333221    12356889


Q ss_pred             EcCCC--CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          197 LSKNE--DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       197 ~~~dg--~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++++  ..+..+..++  ++|-.  ..++.........+....++++++|++.++...
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~--~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeCCCCcceEEEEeCCCeEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            99987  3455555555  55522  222222112122333456789999997776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.67  E-value=3.7e-06  Score=77.85  Aligned_cols=98  Identities=14%  Similarity=0.128  Sum_probs=59.5

Q ss_pred             EEEccCC-cEEEEeC-CCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEE
Q 018705          137 VIAASDG-TLYFTVA-STKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYW  214 (351)
Q Consensus       137 l~~d~dG-~ly~t~~-~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~  214 (351)
                      +++++|| ++|++.. ......        .....+.|+.||.++++......... |.+|+++|||++||++.. +.+.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~  328 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVN  328 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEE
T ss_pred             EEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEE
Confidence            6777774 6777653 100000        00123579999999887655444444 999999999999999876 5222


Q ss_pred             eecCCCC--ceeEEeccCCCCCCceEECCCCC
Q 018705          215 LKGDRAG--ILDAFIENLPGGPDNINLAPDGS  244 (351)
Q Consensus       215 i~~~~~~--~~~~~~~~~~g~pd~i~~d~~G~  244 (351)
                      +-+...+  +....+......|.+++++++|+
T Consensus       329 v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          329 VYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            2233344  32211112344689999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.67  E-value=1.4e-05  Score=71.66  Aligned_cols=185  Identities=17%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe----E-EEEeecCCccccceEEcC--CCCEEEEeCCCCeEE
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET----L-VNWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLK  118 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~----~-~~~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~  118 (351)
                      +..+.-..-.++++++++..+.++..+|.|..|+..++.    . ..+........ .+++.+  +++++++....+.++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEE
Confidence            334444456789999877788999999999999986552    2 22233334556 899987  577666555556555


Q ss_pred             Ec--CCC-----------eEEecCCCCCcccEEEccC--CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          119 VT--EEG-----------VEAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       119 ~~--~~g-----------~~~l~~~~~~~n~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      +.  ..+           ...+......+.++++.++  |.+.++.+.                 +|.|..||..+++..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-----------------DGILRLYDALEPSDL  147 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TCEEEEEECSSTTCT
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-----------------CCcEEEecCCChHHh
Confidence            54  222           2222222367888999998  876666543                 467888886654321


Q ss_pred             E-e-----e--------cCccccceEEEcCC---CCEEEEEecce--eEEeecCCCCceeEEec--cCCCCCCceEECCC
Q 018705          184 V-L-----H--------EGFYFANGIALSKN---EDFVVVCESWK--RYWLKGDRAGILDAFIE--NLPGGPDNINLAPD  242 (351)
Q Consensus       184 ~-~-----~--------~~~~~~ngi~~~~d---g~~lyv~~~~~--~~~i~~~~~~~~~~~~~--~~~g~pd~i~~d~~  242 (351)
                      . +     .        ........++++|+   ++.+.++...+  .++...  .+.......  ...+....++++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--DGKLHVAAKLPGHKSLIRSISWAPS  225 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT--TSCEEEEEECCCCCSCEEEEEECCC
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC--CCceeeeeecCCCCcceeEEEECCC
Confidence            0 0     0        12234567889987   77777777666  333322  222221111  11222345678888


Q ss_pred             C----CEEEEEe
Q 018705          243 G----SFWIGLI  250 (351)
Q Consensus       243 G----~lwva~~  250 (351)
                      |    ++.++..
T Consensus       226 ~~~~~~~l~s~~  237 (351)
T 3f3f_A          226 IGRWYQLIATGC  237 (351)
T ss_dssp             SSCSSEEEEEEE
T ss_pred             CCCcceEEEEEc
Confidence            7    5555543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.67  E-value=5.2e-06  Score=74.99  Aligned_cols=178  Identities=11%  Similarity=0.042  Sum_probs=107.0

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe----EEEEeecCCccccceEEcCCCC-EEE-EeCCCCeEEEcC-CC-
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGG-VIL-CDNEKGLLKVTE-EG-  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~----~~~~~~~~~~p~~gl~~d~~G~-L~v-~d~~~gl~~~~~-~g-  123 (351)
                      ....+++++|++..++++..+|.|..|+..+++    ............ .++++++|+ +++ +...+.+..++. .. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            345689999877889999999999999876665    444444445566 899999998 444 444434444444 43 


Q ss_pred             -eEEecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC---------CeEEEeecCccc
Q 018705          124 -VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---------KETTVLHEGFYF  191 (351)
Q Consensus       124 -~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---------~~~~~~~~~~~~  191 (351)
                       ...+..  ....+.++++.+ +.++++.+.                 ++.|..||..+         ++..........
T Consensus        91 ~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T 1yfq_A           91 SFQALTNNEANLGICRICKYG-DDKLIAASW-----------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             SEEECBSCCCCSCEEEEEEET-TTEEEEEET-----------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             ceEeccccCCCCceEEEEeCC-CCEEEEEcC-----------------CCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence             555544  446788899999 766666543                 46788887553         221111122234


Q ss_pred             cceEEEcCCCCEEEEEecce--eEEe-ecCCCCceeEEeccCCCCCCceEECC-CCCEEEEEe
Q 018705          192 ANGIALSKNEDFVVVCESWK--RYWL-KGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLI  250 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~--~~~i-~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~~  250 (351)
                      ...+++++++  ++++...+  ++|- .....................+.+++ +|++.++..
T Consensus       153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence            6678998887  66666555  3332 21011111112212233345678888 888666554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.66  E-value=0.00012  Score=67.65  Aligned_cols=258  Identities=10%  Similarity=0.079  Sum_probs=140.8

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--C--
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E--  122 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~--  122 (351)
                      .+.-..-.++++.|++..+.++..||.|..||..+++... +........ .++++++|++.++....+.+++..  .  
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~-~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-ECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCC-CCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEE-EEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            3433445689999877889999999999999987776533 333334456 899999998877765555554441  1  


Q ss_pred             ---C----eEEecCCCCCcccEEE-----------ccCCcEEEEeCCCc-----cC----Ccc--c----------cccc
Q 018705          123 ---G----VEAIVPDASFTNDVIA-----------ASDGTLYFTVASTK-----YT----PTD--F----------YKDM  163 (351)
Q Consensus       123 ---g----~~~l~~~~~~~n~l~~-----------d~dG~ly~t~~~~~-----~~----~~~--~----------~~~~  163 (351)
                         +    .+.+......+..+.+           +.||.+.+=|....     +.    ..+  .          ...+
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence               1    1111111112222222           23444333221100     00    000  0          0012


Q ss_pred             ccccCCceEEEEeCCC-Ce-EEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCc-eeEEecc------CCC
Q 018705          164 AEGKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGI-LDAFIEN------LPG  232 (351)
Q Consensus       164 ~~~~~~g~l~~~d~~~-~~-~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~-~~~~~~~------~~g  232 (351)
                      ..+..++.|..||... ++ ...+.......+.++++|+++.+..+..++  ++|-  ...++ ...+...      ...
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd--~~~~~~~~~~~~~~~~~~~~~~  299 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD--MRTGHQLQVYNREPDRNDNELP  299 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE--TTTTEEEEEECCCCSSSCCSSC
T ss_pred             EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE--CCCCcEEEEecccccccccccC
Confidence            2344567788888652 22 233333344578899999999666666555  5552  22222 2222111      011


Q ss_pred             CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCc
Q 018705          233 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY  312 (351)
Q Consensus       233 ~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~  312 (351)
                      ....++++++|++.++...                                    .+.|..+|...++.+..+.......
T Consensus       300 ~v~~~~~s~~g~~l~~g~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h  343 (380)
T 3iz6_a          300 IVTSVAFSISGRLLFAGYS------------------------------------NGDCYVWDTLLAEMVLNLGTLQNSH  343 (380)
T ss_dssp             SCSEEEECSSSSEEEEECT------------------------------------TSCEEEEETTTCCEEEEECCSCSSC
T ss_pred             ceEEEEECCCCCEEEEEEC------------------------------------CCCEEEEECCCCceEEEEecccCCC
Confidence            2356789999987776533                                    2357777875677766663221122


Q ss_pred             ccceeEEEEE-CCEEEEEecCCCeEEEEeCCCC
Q 018705          313 ISFVTSAAEF-DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       313 ~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ...++++... +|.+.++....+.|..+++.+.
T Consensus       344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            3457777764 3444444444667888887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.65  E-value=2.2e-05  Score=74.48  Aligned_cols=143  Identities=11%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             CCceEEEeeCCCeE-EEEEcCCEEEEEEcC--CCeE-EEEe--ecCCccccceEEcCCCCEE-EEeCCCCeEEEc-CCC-
Q 018705           53 HPEDVSVVVSKGAL-YTATRDGWVKYFILH--NETL-VNWK--HIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVT-EEG-  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~--~g~~-~~~~--~~~~~p~~gl~~d~~G~L~-v~d~~~gl~~~~-~~g-  123 (351)
                      ...+++++|++..| +++..+|.|..|+..  +++. ..+.  .....+. .++++++|+.+ +++....++.++ .++ 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            35689999777775 567789999999986  5543 3332  2335567 99999999654 455444455554 233 


Q ss_pred             -eE----EecCCCCCcccEEEccC---CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee-cCccccc
Q 018705          124 -VE----AIVPDASFTNDVIAASD---GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH-EGFYFAN  193 (351)
Q Consensus       124 -~~----~l~~~~~~~n~l~~d~d---G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~-~~~~~~n  193 (351)
                       ..    .+......+++++++++   |.++++.+.                 ++.|..||..+++.. .+. .......
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----------------d~~i~vwd~~~~~~~~~~~~~h~~~v~  245 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----------------DEHIKISHYPQCFIVDKWLFGHKHFVS  245 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----------------TSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----------------CCcEEEEECCCCceeeeeecCCCCceE
Confidence             21    22222257889999999   876666543                 457888887665533 222 2334568


Q ss_pred             eEEEcCCCCEEEEEecce--eEE
Q 018705          194 GIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       194 gi~~~~dg~~lyv~~~~~--~~~  214 (351)
                      .++++ +++.|+.+..++  ++|
T Consensus       246 ~~~~s-d~~~l~s~~~d~~v~vw  267 (450)
T 2vdu_B          246 SICCG-KDYLLLSAGGDDKIFAW  267 (450)
T ss_dssp             EEEEC-STTEEEEEESSSEEEEE
T ss_pred             EEEEC-CCCEEEEEeCCCeEEEE
Confidence            89999 999777776655  444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.65  E-value=2.4e-06  Score=84.00  Aligned_cols=179  Identities=12%  Similarity=0.015  Sum_probs=106.1

Q ss_pred             CCceEEEeeCCCeEEEEEc---CC--EEEEEEc--CCCeEEEEeecCCccccceEEcCCC--CEEEEeCCCCeEEEcC-C
Q 018705           53 HPEDVSVVVSKGALYTATR---DG--WVKYFIL--HNETLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTE-E  122 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~---~g--~I~~~d~--~~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~d~~~gl~~~~~-~  122 (351)
                      ...+++|+|+ ..+|++..   +.  +|+.++.  .++.. .+... .... ..++.++|  .+|++....++..++. +
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~  141 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMR-ILSGVDTGEAVVFTGATEDRVALYALDG  141 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBE-EEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCce-eeeeCCCCCeEEEEecCCCCceEEEccC
Confidence            3457788865 67777664   22  6777876  43333 32221 1122 33444444  5677666666665553 5


Q ss_pred             C-eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCC
Q 018705          123 G-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (351)
Q Consensus       123 g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg  201 (351)
                      | .+.+.....  ++++++|||+.+++.+...             .....|+++|.++++.+.+.......+.+++||||
T Consensus       142 g~~~~l~~~~~--~~~~~spDG~~la~~~~~~-------------~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG  206 (582)
T 3o4h_A          142 GGLRELARLPG--FGFVSDIRGDLIAGLGFFG-------------GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGM  206 (582)
T ss_dssp             TEEEEEEEESS--CEEEEEEETTEEEEEEEEE-------------TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTS
T ss_pred             CcEEEeecCCC--ceEEECCCCCEEEEEEEcC-------------CCCeEEEEEcCCCCCceEeecCCCccccceECCCC
Confidence            6 555543312  8899999997555332200             01246999998888887766554556889999999


Q ss_pred             CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceE--------ECCCCCEEEEEec
Q 018705          202 DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNIN--------LAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~--------~d~~G~lwva~~~  251 (351)
                      +.|+.++..+  .+++-+...++.. ........+.+++        +++||.++++...
T Consensus       207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence            9888666555  5555544444444 2222222233456        9999988777654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.64  E-value=2e-05  Score=71.86  Aligned_cols=177  Identities=12%  Similarity=0.099  Sum_probs=108.3

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      ..-.++++++++..+.++..|+.|..||..+++. ..+........ .++++++|+.+++....+.++++. .+  ....
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence            3446889997777888899999999999877765 34444445566 899999998766655566666663 34  3222


Q ss_pred             cC---CCCCcccEEEccCC----------cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccce
Q 018705          128 VP---DASFTNDVIAASDG----------TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (351)
Q Consensus       128 ~~---~~~~~n~l~~d~dG----------~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  194 (351)
                      ..   ....+..+++++++          .++++.+                 .++.|..||........+.......+.
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTNFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETTTEEEEEEECCSSCEEE
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCCCceeEEEcCccccceE
Confidence            21   11456777887775          3333332                 357889999653323333333445678


Q ss_pred             EEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705          195 IALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       195 i~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      ++++|+|+.|..+..++  ++|-..........+.  .......++++++|.+..+
T Consensus       219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAV  272 (343)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEE
Confidence            99999999777766666  5552211111112221  1122456788888875544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.64  E-value=7.1e-05  Score=70.81  Aligned_cols=170  Identities=10%  Similarity=0.003  Sum_probs=97.2

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~  130 (351)
                      ++.++  ++.++++..||.|..||..+++... +........ .+++.+++.|..+.. .+.+++.  .++  ...+...
T Consensus       127 ~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          127 CLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGST-DRTVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             EEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEET-TSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeC-CCCEEEEECCCCcEEEEECCC
Confidence            55554  6789999999999999988887543 333334456 899988885555554 4555555  355  4455433


Q ss_pred             CCCcccEEEc--cCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-----------------------e
Q 018705          131 ASFTNDVIAA--SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----------------------L  185 (351)
Q Consensus       131 ~~~~n~l~~d--~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----------------------~  185 (351)
                      ...+..+++.  +++.+.++.+.                 ++.|..||..+++...                       .
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            3567777777  46665555543                 3566666655433110                       0


Q ss_pred             ecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          186 HEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       186 ~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      .. .....-.+++++++.++.+..++  ++|  +...++. ..+. ...+....++++++|++.++..
T Consensus       266 ~~-~~~~~v~~~~~~~~~l~~~~~d~~i~vw--d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          266 LR-GHMASVRTVSGHGNIVVSGSYDNTLIVW--DVAQMKCLYILS-GHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EC-CCSSCEEEEEEETTEEEEEETTSCEEEE--ETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEE
T ss_pred             cc-CccceEEEEcCCCCEEEEEeCCCeEEEE--ECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEe
Confidence            11 11122235677888777777666  444  2222222 2222 2222234567888888666554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.63  E-value=0.00014  Score=66.99  Aligned_cols=188  Identities=12%  Similarity=0.088  Sum_probs=113.2

Q ss_pred             ceEEcCCCCE-EEEeC-CCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCce
Q 018705           98 GLTTTKDGGV-ILCDN-EKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (351)
Q Consensus        98 gl~~d~~G~L-~v~d~-~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~  171 (351)
                      .++|.+||++ .++.. ..+.++++  +++  +..+... ..+++++++|||.+.++.+.                  +.
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~~V~~v~fspdg~~l~s~s~------------------~~  198 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-GEVKDLHFSTDGKVVAYITG------------------SS  198 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-SCCCEEEECTTSSEEEEECS------------------SC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-CceEEEEEccCCceEEeccc------------------ee
Confidence            6899999975 45543 35777777  355  3333322 56899999999988776643                  35


Q ss_pred             EEEEeCCCCeEEEeec---CccccceEEEcCCCCEEEEEecce----eEEeecCCCCcee-----EEeccCCCCCCceEE
Q 018705          172 LRKYDPKLKETTVLHE---GFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILD-----AFIENLPGGPDNINL  239 (351)
Q Consensus       172 l~~~d~~~~~~~~~~~---~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~-----~~~~~~~g~pd~i~~  239 (351)
                      +.+|+..+++......   .-.....++++||++.+..+...+    .++.-+.......     .+. ........+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~  277 (365)
T 4h5i_A          199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDV  277 (365)
T ss_dssp             EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEE
T ss_pred             EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEE
Confidence            6666655554432211   123356799999998666655443    2222211111111     111 11122345689


Q ss_pred             CCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEE-CCCCCcccceeE
Q 018705          240 APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-DPDATYISFVTS  318 (351)
Q Consensus       240 d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~g~~~~~~~~  318 (351)
                      +++|++.++...                                    .+.|..+|.++++.+..+. .+.    ..+++
T Consensus       278 Spdg~~lasgs~------------------------------------D~~V~iwd~~~~~~~~~~~~gH~----~~V~~  317 (365)
T 4h5i_A          278 DMKGELAVLASN------------------------------------DNSIALVKLKDLSMSKIFKQAHS----FAITE  317 (365)
T ss_dssp             CTTSCEEEEEET------------------------------------TSCEEEEETTTTEEEEEETTSSS----SCEEE
T ss_pred             CCCCCceEEEcC------------------------------------CCEEEEEECCCCcEEEEecCccc----CCEEE
Confidence            999987766443                                    1347778876788887763 333    35788


Q ss_pred             EEEE-CCEEEEEecCCCeEEEEeCCCCC
Q 018705          319 AAEF-DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       319 ~~~~-~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      +.+. +|++.++....+.|.++++|..-
T Consensus       318 v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            8876 45655555557889999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.62  E-value=1.7e-05  Score=78.57  Aligned_cols=182  Identities=11%  Similarity=0.061  Sum_probs=112.3

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC----
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG----  123 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g----  123 (351)
                      ...+.+++++|+++.+.++. ++.|..++..+++. ..+........ .++++++|++.++....+.++++.  ++    
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~   95 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   95 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCccee
Confidence            34678999998777777766 56899999866644 34444445566 899999999887766677777763  33    


Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCE
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      ...+......+++++++|||...++.+..+             ...+.++.||.. .....+.......+.++|+|++..
T Consensus        96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~-------------~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A           96 KTTIPVFSGPVKDISWDSESKRIAAVGEGR-------------ERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCS-------------SCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             eEeecccCCceEEEEECCCCCEEEEEECCC-------------CceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCe
Confidence            223333336789999999997666554211             012467777743 222222233345678999999873


Q ss_pred             -EEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          204 -VVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       204 -lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                       |..+..++  ++|-.  ..++. ..+. ...+....++++++|++.++...
T Consensus       162 ~l~s~s~D~~v~lwd~--~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEG--PPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEEEEETTSCEEEEET--TTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEeCCCeEEEEEC--CCCeEeeeec-cccCceEEEEECCCCCEEEEEEC
Confidence             55555555  66632  22222 2222 22233456789999997776543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.62  E-value=2.9e-05  Score=73.62  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             cccceEEcCCCCEE-EEeCCCCeEEEc--C--CC--eEEecC--CCCCcccEEEccCCcEEEEeCCCccCCccccccccc
Q 018705           95 SLLGLTTTKDGGVI-LCDNEKGLLKVT--E--EG--VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (351)
Q Consensus        95 p~~gl~~d~~G~L~-v~d~~~gl~~~~--~--~g--~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  165 (351)
                      .. +++++++|+.+ ++....+.++++  .  ++  .+.+..  ....+++++++++|...++.+.              
T Consensus       105 v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------------  169 (450)
T 2vdu_B          105 IR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK--------------  169 (450)
T ss_dssp             EE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--------------
T ss_pred             eE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC--------------
Confidence            45 89999999864 555445555554  3  44  444431  1256889999999975555432              


Q ss_pred             ccCCceEEEEeCCCCeEE-----EeecCccccceEEEcCC---CCEEEEEecce--eEEeecCCCCc-eeEEeccCCCCC
Q 018705          166 GKPYGQLRKYDPKLKETT-----VLHEGFYFANGIALSKN---EDFVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGP  234 (351)
Q Consensus       166 ~~~~g~l~~~d~~~~~~~-----~~~~~~~~~ngi~~~~d---g~~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~p  234 (351)
                         .|.++.|+..+++..     .+.........++++|+   ++.|+.+..++  ++|-..  .+. ...+.....+..
T Consensus       170 ---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          170 ---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP--QCFIVDKWLFGHKHFV  244 (450)
T ss_dssp             ---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES--CTTCEEEECCCCSSCE
T ss_pred             ---CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC--CCceeeeeecCCCCce
Confidence               467888886654432     12222345678999999   87676676665  555321  122 222222233345


Q ss_pred             CceEECCCCCEEEEEe
Q 018705          235 DNINLAPDGSFWIGLI  250 (351)
Q Consensus       235 d~i~~d~~G~lwva~~  250 (351)
                      ..++++ +|++.++..
T Consensus       245 ~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          245 SSICCG-KDYLLLSAG  259 (450)
T ss_dssp             EEEEEC-STTEEEEEE
T ss_pred             EEEEEC-CCCEEEEEe
Confidence            667888 888766654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.61  E-value=1.3e-05  Score=73.66  Aligned_cols=176  Identities=16%  Similarity=0.185  Sum_probs=113.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcC--CCCEEEEeCCCCeEEEc--CCC--eEE
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVT--EEG--VEA  126 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~--~~g--~~~  126 (351)
                      -.++++.+++..+.++..|+.|..||..+++.. .+........ .+.+.+  +|+++++....+.++++  .++  ...
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            357888877778999999999999998887653 3433334445 677764  56666655455555555  355  555


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---ccccceEEEcCCCCE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---FYFANGIALSKNEDF  203 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~ngi~~~~dg~~  203 (351)
                      +......+++++++|+|..+++.+.                 ++.|..||..+++.......   ......++++++++.
T Consensus       236 ~~~h~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  298 (354)
T 2pbi_B          236 FETHESDVNSVRYYPSGDAFASGSD-----------------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL  298 (354)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             ecCCCCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence            5444467899999999988777654                 46788888776644332221   123567899999997


Q ss_pred             EEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          204 VVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      |..+..++  ++|-.  ..++ ...+. ...+....++++++|++.++..
T Consensus       299 l~~g~~d~~i~vwd~--~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          299 LFAGYNDYTINVWDV--LKGSRVSILF-GHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             EEEEETTSCEEEEET--TTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEECCCcEEEEEC--CCCceEEEEE-CCCCcEEEEEECCCCCEEEEEc
Confidence            77776665  55522  1222 22222 2223345678999998776654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.60  E-value=2e-05  Score=71.45  Aligned_cols=153  Identities=12%  Similarity=0.122  Sum_probs=101.1

Q ss_pred             eEecCCCcCCCceEEEeeC----CCeEEEEEcCCEEEEEEcCCCeE-EEEee-----cCCccccceEEcCC----CCEEE
Q 018705           44 TKLGEGCVNHPEDVSVVVS----KGALYTATRDGWVKYFILHNETL-VNWKH-----IDSQSLLGLTTTKD----GGVIL  109 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~----~g~lyv~~~~g~I~~~d~~~g~~-~~~~~-----~~~~p~~gl~~d~~----G~L~v  109 (351)
                      ..+..+.-....+++++|.    +..++++..++.|..|+..+++. ..+..     ...... .+++.++    |++++
T Consensus        11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~   89 (366)
T 3k26_A           11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLA   89 (366)
T ss_dssp             EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEE
T ss_pred             EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEE
Confidence            3455554445568999863    45688888889999999875543 23221     123355 8888877    55555


Q ss_pred             EeCCCCeEEEc--CCC--eEEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          110 CDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       110 ~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      +....+.+++.  .++  ...+......+.++++.+ ++.+.++.+.                 +|.|..||..+++...
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----------------DHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTTTEEEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEEeecCeEEE
Confidence            54455656555  245  455544446789999999 7877776543                 4689999988777655


Q ss_pred             ee----cCccccceEEEcCCCCEEEEEecce--eEE
Q 018705          185 LH----EGFYFANGIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       185 ~~----~~~~~~ngi~~~~dg~~lyv~~~~~--~~~  214 (351)
                      ..    ........++++++++.++.+..++  ++|
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  188 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW  188 (366)
T ss_dssp             EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EecccccccCceeEEEECCCCCEEEEecCCCCEEEE
Confidence            43    2334567899999999777776665  444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.60  E-value=7e-05  Score=68.23  Aligned_cols=177  Identities=11%  Similarity=0.078  Sum_probs=108.3

Q ss_pred             CCceEEE-----ee-CCCeEEEEEcCCEEEEEEcCCCe-------E-EEEeecCCccccceEEcCCCCEEEEeCCCCeEE
Q 018705           53 HPEDVSV-----VV-SKGALYTATRDGWVKYFILHNET-------L-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK  118 (351)
Q Consensus        53 ~pe~i~~-----d~-~~g~lyv~~~~g~I~~~d~~~g~-------~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~  118 (351)
                      .-.++++     .+ ++..|.++..|+.|..||..+++       . ..+........ .+++++++.+.++....+.++
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWDKTLR  101 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETTSEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCCCcEE
Confidence            3457777     43 45678889999999999875432       1 12222233455 899999998877766677777


Q ss_pred             Ec--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee---cCccc
Q 018705          119 VT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYF  191 (351)
Q Consensus       119 ~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~~~  191 (351)
                      ++  .++  ...+......+++++++|+|+..++.+.                 ++.|..||..........   .....
T Consensus       102 lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R          102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----------------EREIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----------------TSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----------------CCEEEEEeccCCceeeeecccCCCce
Confidence            76  355  4555444467889999999987776654                 467888887643332222   11223


Q ss_pred             cceEEEcCCC----------CEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          192 ANGIALSKNE----------DFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       192 ~ngi~~~~dg----------~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ...++++|++          ..+..+..++  ++|-  ........+. ...+....++++++|++.++..
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--TNFQIRYTFK-AHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE--TTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc--CCCceeEEEc-CccccceEEEECCCCCEEEEEc
Confidence            5678888876          4455555555  5552  2211112222 2223345678999998766654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.60  E-value=3.9e-05  Score=82.01  Aligned_cols=230  Identities=14%  Similarity=0.088  Sum_probs=140.8

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCC--CCEEEEeCCCCeEEEc--CCC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      ...+++++|++..+.++..+|.|..||..+++.. .+........ .+++.++  +.++++....+.++++  .++  ..
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~  737 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN-CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN  737 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE-EEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence            4467899987778889999999999999888653 3333344455 8888874  4455555455655555  345  44


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--------------ccc
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------------FYF  191 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------------~~~  191 (351)
                      .+......+++++++++|...++.+.                 +|.|..||..+++.......              ...
T Consensus       738 ~~~~h~~~v~~~~~sp~~~~l~s~s~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          738 TMFGHTNSVNHCRFSPDDELLASCSA-----------------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEES-----------------SSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             eecCCCCCEEEEEEecCCCEEEEEEC-----------------CCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence            45444467899999999987777654                 46788888766544322110              113


Q ss_pred             cceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHH
Q 018705          192 ANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  270 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      ...++++++|+.+.++..+. .+|-. ........+.....+....++++++|++.++...                   
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------------  860 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDI-HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-------------------  860 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEET-TTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-------------------
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEe-cCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-------------------
Confidence            55788999999777776544 33321 1112222222223334567889999987766543                   


Q ss_pred             HhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEEecCCCeEEEEeCC
Q 018705          271 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGILPLD  342 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig~~~~~~i~~~~~~  342 (351)
                                       .+.|..+|..+++.+..+..+.+    .++++... ++ .|..++ ..+.+..+++.
T Consensus       861 -----------------dg~v~vwd~~~~~~~~~~~~h~~----~v~~v~~spdg~~l~s~s-~dg~v~vw~~~  912 (1249)
T 3sfz_A          861 -----------------QYCVELWNIDSRLKVADCRGHLS----WVHGVMFSPDGSSFLTAS-DDQTIRVWETK  912 (1249)
T ss_dssp             -----------------SSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEE-TTSCEEEEEHH
T ss_pred             -----------------CCeEEEEEcCCCceeeecCCCcc----ceEEEEECCCCCEEEEEe-CCCeEEEEEcc
Confidence                             13466667656666666654332    46666654 33 344444 35667666643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.59  E-value=1e-05  Score=73.07  Aligned_cols=218  Identities=14%  Similarity=0.070  Sum_probs=133.2

Q ss_pred             CCCceEEEeeCCC-eEEEEEcCCEEEEEEc-CCCeEEEEee--cCCccccceEEcCCCCEEEEeCCCCeEEEcC--C---
Q 018705           52 NHPEDVSVVVSKG-ALYTATRDGWVKYFIL-HNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--E---  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g-~lyv~~~~g~I~~~d~-~~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~---  122 (351)
                      ....++++++++. .++++..+|.|..|+. .+++...+..  ...... .+++.+ ++++++....+.+++..  .   
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            3467899998777 7999999999999998 8887766654  445566 899999 76666555556555542  2   


Q ss_pred             ------C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-Ce--EEEee-cCcc
Q 018705          123 ------G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KE--TTVLH-EGFY  190 (351)
Q Consensus       123 ------g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~--~~~~~-~~~~  190 (351)
                            +  ...+. ....+.++++++++ ++++..                  .+.|..||..+ ++  ..... ..-.
T Consensus       135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~~  194 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMN------------------NSQVQWFRLPLCEDDNGTIEESGLKY  194 (342)
T ss_dssp             BCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEES------------------TTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred             ccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeC------------------CCeEEEEECCccccccceeeecCCCC
Confidence                  2  11111 12567888888887 554432                  36788898765 32  22222 2233


Q ss_pred             ccceEEEcC-CCCEEEEEecce--eEEeecCC-----CCceeEEeccC--------CCCCCceEECCCCCEEEEEecCCc
Q 018705          191 FANGIALSK-NEDFVVVCESWK--RYWLKGDR-----AGILDAFIENL--------PGGPDNINLAPDGSFWIGLIKMNQ  254 (351)
Q Consensus       191 ~~ngi~~~~-dg~~lyv~~~~~--~~~i~~~~-----~~~~~~~~~~~--------~g~pd~i~~d~~G~lwva~~~~~~  254 (351)
                      ....+++++ +++.++++...+  ++|--...     ......+....        .+....++++++|++.++...   
T Consensus       195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---  271 (342)
T 1yfq_A          195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---  271 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---
T ss_pred             ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC---
Confidence            567899999 999777777666  45433221     11222232111        112345688888875555432   


Q ss_pred             hhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECC-CCCcccceeEEEEECCEEEEEec
Q 018705          255 TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP-DATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                                                       .+.|..+|..+++.+..+... .+    .++++..++..|..++.
T Consensus       272 ---------------------------------dg~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~~~~~l~s~s~  312 (342)
T 1yfq_A          272 ---------------------------------DGIISCWNLQTRKKIKNFAKFNED----SVVKIACSDNILCLATS  312 (342)
T ss_dssp             ---------------------------------TSCEEEEETTTTEEEEECCCCSSS----EEEEEEECSSEEEEEEE
T ss_pred             ---------------------------------CceEEEEcCccHhHhhhhhcccCC----CceEecCCCCeEEEEec
Confidence                                             134777888568877777544 32    35555533445655554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.59  E-value=2.6e-05  Score=73.20  Aligned_cols=179  Identities=13%  Similarity=0.087  Sum_probs=106.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe------------EEEEeecC------------CccccceEEcCCC--C
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET------------LVNWKHID------------SQSLLGLTTTKDG--G  106 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~------------~~~~~~~~------------~~p~~gl~~d~~G--~  106 (351)
                      .-.+++++|++..|.++..+|.|..|+..+++            ...+....            .... .+++.+++  .
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~~  108 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNAA  108 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCcc
Confidence            34688999877888999999999999986654            22333222            3355 89999887  5


Q ss_pred             EEEEeCCCCeEEEcC--CC-eE----------------------------------------Ee-cCCCCCcccEEEccC
Q 018705          107 VILCDNEKGLLKVTE--EG-VE----------------------------------------AI-VPDASFTNDVIAASD  142 (351)
Q Consensus       107 L~v~d~~~gl~~~~~--~g-~~----------------------------------------~l-~~~~~~~n~l~~d~d  142 (351)
                      ++++....+.++++.  ++ ..                                        .+ ......+.+++++++
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence            555545556566552  22 11                                        11 112256888999999


Q ss_pred             CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEee--------cCccccceEEEcCCC-CEEEEEecce-
Q 018705          143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLH--------EGFYFANGIALSKNE-DFVVVCESWK-  211 (351)
Q Consensus       143 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~--------~~~~~~ngi~~~~dg-~~lyv~~~~~-  211 (351)
                      |.++++. .                 ++.|..||..++ +.....        ..-...+.++++|++ +.++.+..++ 
T Consensus       189 ~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          189 YETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT  250 (447)
T ss_dssp             SSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence            9877765 3                 467888887632 222111        122346789999998 7677776666 


Q ss_pred             -eEEee-cCCC--CceeEEeccCC-----------CCCCceEECCCCCEEEEEe
Q 018705          212 -RYWLK-GDRA--GILDAFIENLP-----------GGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       212 -~~~i~-~~~~--~~~~~~~~~~~-----------g~pd~i~~d~~G~lwva~~  250 (351)
                       ++|-. ....  .....+.....           +....++++++|++.++..
T Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  304 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD  304 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence             55522 1110  01233322110           1235678899998777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.59  E-value=1.9e-05  Score=78.60  Aligned_cols=184  Identities=11%  Similarity=-0.024  Sum_probs=105.4

Q ss_pred             eEEEe--eCCCe-EEEE-EcCCEEEEEEcC--C-CeEEEEee-----cCCccccceEEcCCCC-EEEEeCC---------
Q 018705           56 DVSVV--VSKGA-LYTA-TRDGWVKYFILH--N-ETLVNWKH-----IDSQSLLGLTTTKDGG-VILCDNE---------  113 (351)
Q Consensus        56 ~i~~d--~~~g~-lyv~-~~~g~I~~~d~~--~-g~~~~~~~-----~~~~p~~gl~~d~~G~-L~v~d~~---------  113 (351)
                      ++++.  |+++. ++.+ ..+.+|+.++..  + ++.+.+..     ...... .+++++||+ |+.+...         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCc
Confidence            45454  66766 5443 346789999975  3 66555543     233456 889999996 4444322         


Q ss_pred             -CCeEEEcC-C------C-eEEec-CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCC-CC-
Q 018705          114 -KGLLKVTE-E------G-VEAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LK-  180 (351)
Q Consensus       114 -~gl~~~~~-~------g-~~~l~-~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~-  180 (351)
                       ..++.++. +      + .+.+. .......+++++|||+ |+++.....  ...     |   ....|+.+|.+ ++ 
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~--~~~-----~---~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP--RMP-----W---EGTELKTARVTEDGR  229 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT--CCT-----T---TCEEEEEEEECTTSC
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC--CCC-----C---CCcEEEEEEECCCCc
Confidence             24677773 5      7 66665 4445677889999995 555542210  000     0   12469999987 46 


Q ss_pred             --eEEEeecC-ccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCC--------CCceEECCCCCEEE
Q 018705          181 --ETTVLHEG-FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGG--------PDNINLAPDGSFWI  247 (351)
Q Consensus       181 --~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~--------pd~i~~d~~G~lwv  247 (351)
                        +.+.+... ......++++|||+.+|.++..+  +++.-+...++.+.+.......        ...+++.++|++++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence              55555443 34567889999999444444444  5665443233333222110000        23466777888766


Q ss_pred             EEe
Q 018705          248 GLI  250 (351)
Q Consensus       248 a~~  250 (351)
                      ...
T Consensus       310 ~~~  312 (662)
T 3azo_A          310 VHG  312 (662)
T ss_dssp             EEB
T ss_pred             EEE
Confidence            643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.59  E-value=2.1e-05  Score=72.51  Aligned_cols=187  Identities=18%  Similarity=0.254  Sum_probs=105.9

Q ss_pred             EEEeeCCCeEEEEEc-CC--EEEEEEcCCCeEEEEeecCCc-cccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEecC
Q 018705           57 VSVVVSKGALYTATR-DG--WVKYFILHNETLVNWKHIDSQ-SLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIVP  129 (351)
Q Consensus        57 i~~d~~~g~lyv~~~-~g--~I~~~d~~~g~~~~~~~~~~~-p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l~~  129 (351)
                      ++++|++..++.... +|  +|+.+|..+++.+........ .. +.+++++|+ |+++.....++.++. ++ .+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            678877776655554 55  599999988887665443332 34 678999995 666665556888885 55 433322


Q ss_pred             -CCCCcc--cEEEccCCcEEEEeCC--CccCC-ccc--ccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC-C
Q 018705          130 -DASFTN--DVIAASDGTLYFTVAS--TKYTP-TDF--YKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK-N  200 (351)
Q Consensus       130 -~~~~~n--~l~~d~dG~ly~t~~~--~~~~~-~~~--~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~-d  200 (351)
                       ......  ....++||...+....  ..+.. ..+  ....+.......|+++|.++++.+.+.........++++| |
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence             111121  2235788876653211  00100 000  0012223345689999999898877765555567899999 9


Q ss_pred             CCEEEEEecc-----e-eEEeecCCCCceeEEeccCCC-CCCceEECCCCC
Q 018705          201 EDFVVVCESW-----K-RYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS  244 (351)
Q Consensus       201 g~~lyv~~~~-----~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~  244 (351)
                      |+.|.++...     . ++|+-+...+..+.+.....+ ......++++|+
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence            9876654432     2 555543322333333221111 112357899997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.58  E-value=4.9e-05  Score=81.26  Aligned_cols=233  Identities=14%  Similarity=0.098  Sum_probs=142.5

Q ss_pred             cCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eE
Q 018705           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      ...-.+++++|++..+.++..+|.|..||..+++.. .+........ .++++++|++.++....+.++++  .++  ..
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            344568899987788888999999999998777643 3333345566 89999999877766566666666  355  55


Q ss_pred             EecCCCCCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCC
Q 018705          126 AIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNED  202 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~  202 (351)
                      .+......+..+++.+++  .+.++.+.                 ++.|..||..+++..... ......+.++++|+++
T Consensus       694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  756 (1249)
T 3sfz_A          694 TYDEHSEQVNCCHFTNKSNHLLLATGSN-----------------DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE  756 (1249)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEEET-----------------TSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred             EEcCCCCcEEEEEEecCCCceEEEEEeC-----------------CCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence            554444678888998854  45555433                 467999998877654333 3334567899999999


Q ss_pred             EEEEEecce--eEEeecCCCCce-eEEe------------ccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHH
Q 018705          203 FVVVCESWK--RYWLKGDRAGIL-DAFI------------ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  267 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~-~~~~------------~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~  267 (351)
                      .++.+..++  ++|-..  .++. ..+.            .........++++++|...++...                
T Consensus       757 ~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----------------  818 (1249)
T 3sfz_A          757 LLASCSADGTLRLWDVR--SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK----------------  818 (1249)
T ss_dssp             EEEEEESSSEEEEEEGG--GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET----------------
T ss_pred             EEEEEECCCeEEEEeCC--CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC----------------
Confidence            777776665  555221  1111 1110            001112345678899987766543                


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          268 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                                           +.+..+|..+++.+..+....   ...++++... ++.+.+.....+.+..+++.+
T Consensus       819 ---------------------~~v~~~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          819 ---------------------NKVLLFDIHTSGLLAEIHTGH---HSTIQYCDFSPYDHLAVIALSQYCVELWNIDS  871 (1249)
T ss_dssp             ---------------------TEEEEEETTTCCEEEEEECSS---SSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred             ---------------------CcEEEEEecCCCceeEEcCCC---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence                                 246677775666666665322   1234455443 233333333355566666554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.58  E-value=5.7e-06  Score=75.53  Aligned_cols=177  Identities=10%  Similarity=0.001  Sum_probs=108.7

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE---eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~---~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~  124 (351)
                      ....++++++++..++++..+|.|..||..+++....   ......+. .++++++|+.+++....+.+++.  ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            3456899998777888999999999999877764322   22334456 89999999766554444544443  222  1


Q ss_pred             ---EEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeC------------------CCCeE
Q 018705          125 ---EAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP------------------KLKET  182 (351)
Q Consensus       125 ---~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~------------------~~~~~  182 (351)
                         ..+... ...+.+++++++|..+++.+.                 +|.+..||.                  .+++.
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             eeeeeeecccCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccccccccccccccccchhhh
Confidence               222222 267889999999987666543                 456777773                  23333


Q ss_pred             E-EeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          183 T-VLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       183 ~-~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      . .+.........++++++++.++.+..++  ++|-.  ..++ ...+. ........++++++|.+.++.
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA--DKKMAVATLA-SETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG--GGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE
T ss_pred             eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC--CCCceeEEEc-cCCCCeEEEEEecCCCEEEEE
Confidence            2 2323334567899999999777777665  44422  1122 22222 122223567888888766655

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.58  E-value=0.00023  Score=63.83  Aligned_cols=177  Identities=11%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~~l  127 (351)
                      ....++++++++..++++..|+.|..++...+....... ...... ...+.++++.+++....+.+++. ..+  ....
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            445688999777788899999999999986665543322 223344 56677777655554444555555 333  2222


Q ss_pred             cCC--CCCcccEEEccCC--cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCC
Q 018705          128 VPD--ASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNED  202 (351)
Q Consensus       128 ~~~--~~~~n~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~  202 (351)
                      ...  ...++.+++.+++  .++++.+.                 ++.|..||..+++......+ -...+.|+++|+++
T Consensus       166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~-----------------d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          166 QDESHSEWVSCVRFSPNSSNPIIVSCGW-----------------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             CSSSCSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EeccccCcccceEEccCCCCcEEEEEcC-----------------CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence            211  2456677777664  35555433                 45788899887766443332 33467899999999


Q ss_pred             EEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          203 FVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      .|+.+..++  ++|  +....+. ..+.  .......+.+.+++.+..+..
T Consensus       229 ~l~s~s~Dg~i~iw--d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~  275 (340)
T 4aow_A          229 LCASGGKDGQAMLW--DLNEGKHLYTLD--GGDIINALCFSPNRYWLCAAT  275 (340)
T ss_dssp             EEEEEETTCEEEEE--ETTTTEEEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEEeCCCeEEEE--EeccCceeeeec--CCceEEeeecCCCCceeeccC
Confidence            777776666  444  2222221 1221  112234567777777666543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.58  E-value=8.9e-07  Score=81.55  Aligned_cols=144  Identities=7%  Similarity=-0.067  Sum_probs=90.9

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CCe---
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EGV---  124 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g~---  124 (351)
                      .-.+++++|++..+.++..+|.|..|+..++..+.   +........ .+++.++|+++++....+.+++..  ++.   
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence            35689999877778888889999999987764322   222334456 899999997666554556666652  222   


Q ss_pred             --EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe----EEEeec-CccccceEEE
Q 018705          125 --EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHE-GFYFANGIAL  197 (351)
Q Consensus       125 --~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~~~~~~-~~~~~ngi~~  197 (351)
                        ..+......+.+++++++|.+.++.+.                 ++.|..||..+++    ...+.. .-.....+++
T Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           92 QTLVLLRLNRAATFVRWSPNEDKFAVGSG-----------------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             CEEECCCCSSCEEEEECCTTSSCCEEEES-----------------SSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             eeeEecccCCceEEEEECCCCCEEEEEec-----------------CCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence              222222367888999999876555443                 4568888876654    233333 3445678999


Q ss_pred             cCCCCEEEEEecce--eEE
Q 018705          198 SKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       198 ~~dg~~lyv~~~~~--~~~  214 (351)
                      +|+++.++.+..++  ++|
T Consensus       155 ~~~~~~l~~~~~d~~i~iw  173 (377)
T 3dwl_C          155 HPNNVLLAAGCADRKAYVL  173 (377)
T ss_dssp             CTTSSEEEEEESSSCEEEE
T ss_pred             cCCCCEEEEEeCCCEEEEE
Confidence            99999777766665  444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.57  E-value=7.6e-05  Score=67.01  Aligned_cols=185  Identities=14%  Similarity=0.110  Sum_probs=102.3

Q ss_pred             CCCcCCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeE------EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           48 EGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL------VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~------~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      .|.-..-.+|+++|++ ..|.++..||.|..||..+++.      ..+........ .++++++|+++++....+.+++.
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEE
Confidence            3443445689999765 4677889999999999755431      12222234456 89999999877765556666655


Q ss_pred             -C-CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--Cccccce
Q 018705          121 -E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GFYFANG  194 (351)
Q Consensus       121 -~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~ng  194 (351)
                       . .+  .................+++...++.+.                 ++.+..||...........  .......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----------------d~~~~~~d~~~~~~~~~~~~~~~~~v~~  176 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTVQDESHSEWVSC  176 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred             eecccceeeeecCCCCceeEEEEeecCccceeecC-----------------CCeEEEEEeCCCceEEEEeccccCcccc
Confidence             3 33  2222222245556667777765555433                 4567778765443332221  1233456


Q ss_pred             EEEcCCCC-EEEE-EecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          195 IALSKNED-FVVV-CESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       195 i~~~~dg~-~lyv-~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++++++. .+++ +..++.+.+-+...++.........+....++++++|++.++..
T Consensus       177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            77877654 2333 33333222222222222211112223335578899998777654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.57  E-value=0.00011  Score=67.53  Aligned_cols=233  Identities=11%  Similarity=0.026  Sum_probs=132.4

Q ss_pred             CCCceEEEee-CCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC---CCCEEEE-eCCCCeEEEc-CCC--
Q 018705           52 NHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK---DGGVILC-DNEKGLLKVT-EEG--  123 (351)
Q Consensus        52 ~~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~---~G~L~v~-d~~~gl~~~~-~~g--  123 (351)
                      ....++++.+ ++..++++..+|.|..||..+++............ .+.+.+   ++.++++ ...+.+..++ .++  
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            3456888987 44577888889999999998877654444444455 677765   3445544 4443444444 344  


Q ss_pred             eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEe---------------
Q 018705          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVL---------------  185 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~---------------  185 (351)
                      ...+......+.+++++++|. ++++.+.                 +|.|..||..+++  ...+               
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASA-----------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcC-----------------CCcEEEEECCCCCcccccccccccccceeecccc
Confidence            555554446788999999986 5655543                 4568888765443  1111               


Q ss_pred             ecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEecc-----CCCCCCceEECCCCCEEEEEecCCchhh
Q 018705          186 HEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIEN-----LPGGPDNINLAPDGSFWIGLIKMNQTGV  257 (351)
Q Consensus       186 ~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~-----~~g~pd~i~~d~~G~lwva~~~~~~~~~  257 (351)
                      .........++++|+++.++.+..++  ++|-.  ..++. ..+...     .....-....+..+.+.++...      
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  313 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS--SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG------  313 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET------
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEEC--CCCccceeccccccccccccceeEEecCCCceEEEEecC------
Confidence            11123456799999999787777666  44422  11111 111000     0011111122333444444322      


Q ss_pred             hhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCE-EEEEecCCCe
Q 018705          258 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGN-LYLASLQSNF  335 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~-L~ig~~~~~~  335 (351)
                                                     +.+..+|..+++.+..+..+.+    .++++... +++ |+.++. .+.
T Consensus       314 -------------------------------~~i~v~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~-dg~  357 (408)
T 4a11_B          314 -------------------------------STIAVYTVYSGEQITMLKGHYK----TVDCCVFQSNFQELYSGSR-DCN  357 (408)
T ss_dssp             -------------------------------TEEEEEETTTCCEEEEECCCSS----CEEEEEEETTTTEEEEEET-TSC
T ss_pred             -------------------------------CEEEEEECcCCcceeeeccCCC----eEEEEEEcCCCCEEEEECC-CCe
Confidence                                           3577788767888888765443    46666655 344 555544 677


Q ss_pred             EEEEeCCCCCC
Q 018705          336 IGILPLDGPEP  346 (351)
Q Consensus       336 i~~~~~~~~~~  346 (351)
                      |..+++...++
T Consensus       358 i~iw~~~~~~~  368 (408)
T 4a11_B          358 ILAWVPSLYEP  368 (408)
T ss_dssp             EEEEEECC---
T ss_pred             EEEEeCCCCCc
Confidence            88888877655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.56  E-value=8.3e-06  Score=74.66  Aligned_cols=177  Identities=8%  Similarity=0.024  Sum_probs=110.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE--Ee--ecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC----e
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVN--WK--HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG----V  124 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~--~~--~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g----~  124 (351)
                      .+++++|++..|.++..|+.|..|+..+++...  ..  ....... .++++++|+++++....+.+++.  ..+    .
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            478999887888899999999999986665421  11  1223455 89999999877766556666665  233    2


Q ss_pred             EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-E---EEeecCccccceEEEcCC
Q 018705          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-T---TVLHEGFYFANGIALSKN  200 (351)
Q Consensus       125 ~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~---~~~~~~~~~~ngi~~~~d  200 (351)
                      ..+......+++++++|+|++.++.+.                 ++.|..||..+++ .   ..+.........++++|+
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            333333367899999999988877654                 4567777765432 1   122222344678999999


Q ss_pred             CCEEEEEecce--eEEeecCCCCceeEE--eccCCCCCCceEECCCCCEEEEEec
Q 018705          201 EDFVVVCESWK--RYWLKGDRAGILDAF--IENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i~~~~~~~~~~~--~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++.|..+..++  ++|-..  .++....  .....+....++++++|++.++...
T Consensus       162 ~~~l~s~s~d~~i~~w~~~--~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREE--EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEE--TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEeCCCcEEEEEec--CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            99776666665  555321  1221111  1122223355788888887666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.55  E-value=3.5e-06  Score=84.79  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=86.9

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC----ccccceEEcCCCCEEE-EeCC---------CCeEE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVIL-CDNE---------KGLLK  118 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~----~p~~gl~~d~~G~L~v-~d~~---------~gl~~  118 (351)
                      .+.+++|.|++..++. ..+|.|+.||..+++.+.......    .+. .+++++||+..+ +...         ..++.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            3678899976665555 678899999998887654433222    256 899999997444 3322         23444


Q ss_pred             EcC-CC-eEEecCCC---CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc--
Q 018705          119 VTE-EG-VEAIVPDA---SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--  190 (351)
Q Consensus       119 ~~~-~g-~~~l~~~~---~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--  190 (351)
                      .+. +| .+.+....   ..+..++++|||+ |.++..                   +.|+.+|..+++...+.....  
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------------------~~i~~~~~~~g~~~~~~~~~~~~  156 (723)
T 1xfd_A           96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------------------NNIYYCAHVGKQAIRVVSTGKEG  156 (723)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------------------TEEEEESSSSSCCEEEECCCBTT
T ss_pred             EECCCCceEeccCCccccccccccEECCCCCEEEEEEC-------------------CeEEEEECCCCceEEEecCCCCC
Confidence            553 55 55554322   2477899999995 444332                   368999887776655443211  


Q ss_pred             -----------------ccceEEEcCCCCEEEEEe
Q 018705          191 -----------------FANGIALSKNEDFVVVCE  208 (351)
Q Consensus       191 -----------------~~ngi~~~~dg~~lyv~~  208 (351)
                                       ...++++||||+.|+++.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                             225799999999777764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.54  E-value=8.9e-06  Score=74.99  Aligned_cols=142  Identities=14%  Similarity=0.114  Sum_probs=88.5

Q ss_pred             CceEEEeeCCCeEEEEEc------CCEEEEEEcCCCeEE-----EEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705           54 PEDVSVVVSKGALYTATR------DGWVKYFILHNETLV-----NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~------~g~I~~~d~~~g~~~-----~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-  121 (351)
                      -.+++|+|++..|.++..      |+.|+.++..+++..     .......... .+++.++++++++.. .+.++++. 
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~-dg~v~lWd~  122 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASD-SGAVELWEI  122 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEET-TSCEEEC--
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEEC-CCEEEEeec
Confidence            468999987777777765      677888876554321     1111223355 899999998888765 45666652 


Q ss_pred             -CC-eE-E----ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-Cccccc
Q 018705          122 -EG-VE-A----IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFAN  193 (351)
Q Consensus       122 -~g-~~-~----l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~n  193 (351)
                       ++ .. .    .......+++++++|+|+..++.+.                 ++.|..||..+++...... .....+
T Consensus       123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----------------DFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             ------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEE
Confidence             33 11 1    1112257889999999987777654                 4679999988877654433 234567


Q ss_pred             eEEEcCCCCEEEE-Eecce--eEE
Q 018705          194 GIALSKNEDFVVV-CESWK--RYW  214 (351)
Q Consensus       194 gi~~~~dg~~lyv-~~~~~--~~~  214 (351)
                      .++++++++.+++ +..++  ++|
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~w  209 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLW  209 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEEC
T ss_pred             EEEEccCCCceeeeeccCCceEEE
Confidence            8999998864444 44444  444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.54  E-value=1.4e-05  Score=73.72  Aligned_cols=176  Identities=10%  Similarity=-0.017  Sum_probs=103.9

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-Ccc-ccceEEcCCCCEEEEe----------------------
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQS-LLGLTTTKDGGVILCD----------------------  111 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~~p-~~gl~~d~~G~L~v~d----------------------  111 (351)
                      +++++|++..|+....++.|+++|..+++.+...... ... .....++++|+++++.                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            6789988888888888889999999888765443322 211 1023457888877632                      


Q ss_pred             -CCCCeEEEcC-CC-eEEecCCCCCcccEEEcc-CCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          112 -NEKGLLKVTE-EG-VEAIVPDASFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       112 -~~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~-dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                       ....++.++. +| .+.+......+.+++++| ||. |.++.....            ......|+.+|.++++.+.+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~------------~~~~~~l~~~d~~~~~~~~l~  232 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH------------DLVDARMWLINEDGTNMRKVK  232 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT------------TTSSCSEEEEETTSCCCEESC
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC------------CCCcceEEEEeCCCCceEEee
Confidence             1235777774 56 555544335678899999 985 444432200            011347999998777666654


Q ss_pred             cCc--cccceEEEcCCCCEEEE-Eecce----eEEeecCCCCceeEEeccCCC------CCCceEECCCCC
Q 018705          187 EGF--YFANGIALSKNEDFVVV-CESWK----RYWLKGDRAGILDAFIENLPG------GPDNINLAPDGS  244 (351)
Q Consensus       187 ~~~--~~~ngi~~~~dg~~lyv-~~~~~----~~~i~~~~~~~~~~~~~~~~g------~pd~i~~d~~G~  244 (351)
                      ...  ......+++|||+.|++ +...+    .+++-+...++.+.+.. .++      .+++..++++|+
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEEC
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCC
Confidence            432  13446789999996644 44322    25555544444433322 222      145556666665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.54  E-value=0.00013  Score=64.89  Aligned_cols=233  Identities=9%  Similarity=-0.003  Sum_probs=132.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC---eEEec
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG---VEAIV  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g---~~~l~  128 (351)
                      .++++++++..+.++..||.|..|+..+++...... ....   ...+..++.+.++....+..++. . .+   ...+.
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~---~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce---EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            588999877888999999999999998887543322 2222   23344556665555455555554 2 22   33333


Q ss_pred             CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-----EEeecCccccceEEEcCCCC-
Q 018705          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-----TVLHEGFYFANGIALSKNED-  202 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-----~~~~~~~~~~ngi~~~~dg~-  202 (351)
                      ........++..++|...++...                 ++.|..||..+++.     ............+++++++. 
T Consensus       148 ~~~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  210 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN  210 (318)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred             CccCceEEEEEcCCCCEEEEEec-----------------CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence            33356777888888877766543                 46788888765432     11111122345677777665 


Q ss_pred             EEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcc
Q 018705          203 FVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  280 (351)
Q Consensus       203 ~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
                      .++++....  .+.+-+.......... ........+.+.++++..++...                             
T Consensus       211 ~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg-----------------------------  260 (318)
T 4ggc_A          211 VLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHG-----------------------------  260 (318)
T ss_dssp             EEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEEC-----------------------------
T ss_pred             EEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEE-----------------------------
Confidence            333333222  2332222222222111 11112234566677765444321                             


Q ss_pred             cCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          281 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       281 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                           ...+.|..+|..+++.+..+..+.+    .++++... +|++.++....+.|..+++....|
T Consensus       261 -----~~d~~i~iwd~~~~~~~~~l~gH~~----~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          261 -----FAQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             -----TTTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred             -----cCCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence                 1224577788768888888866543    57777765 455444444467788888887776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.53  E-value=2.1e-05  Score=73.08  Aligned_cols=86  Identities=7%  Similarity=-0.161  Sum_probs=61.3

Q ss_pred             CCeEEEEEcC-C----EEEEEEcCCCeEEEEeecCCccccceEEcCCC-CEEEEeC----------CCCeEEEcC-CC--
Q 018705           63 KGALYTATRD-G----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN----------EKGLLKVTE-EG--  123 (351)
Q Consensus        63 ~g~lyv~~~~-g----~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~d~----------~~gl~~~~~-~g--  123 (351)
                      .+.+|+.... +    +|..+|..++++..-...+..|  +++++++| .+||++.          .+.+..+|. ++  
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            4567876653 3    7999999888876544555667  79999998 6999973          234777774 55  


Q ss_pred             eEEecCC-------CCCcccEEEccCC-cEEEEeC
Q 018705          124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVA  150 (351)
Q Consensus       124 ~~~l~~~-------~~~~n~l~~d~dG-~ly~t~~  150 (351)
                      ...+..+       ...|.+++++||| .+|+++.
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~  143 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEcc
Confidence            4444321       1469999999999 6999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.52  E-value=1e-05  Score=76.40  Aligned_cols=183  Identities=9%  Similarity=0.104  Sum_probs=107.0

Q ss_pred             cCCCceEEEeeCCCeEEEEEc-C------CEEEEEEcCCCeEE-EEeec---CCccccceEEcCCCCEEEEeC-------
Q 018705           51 VNHPEDVSVVVSKGALYTATR-D------GWVKYFILHNETLV-NWKHI---DSQSLLGLTTTKDGGVILCDN-------  112 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~~-~------g~I~~~d~~~g~~~-~~~~~---~~~p~~gl~~d~~G~L~v~d~-------  112 (351)
                      ...|..+...| +| +||+.. +      |+|..+|.+++++. ++...   ...++ .+.+.++++.+++..       
T Consensus       137 ~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          137 YSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHH
T ss_pred             CCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCcccc
Confidence            34788889985 45 777432 2      68999999888764 33322   12345 577788887655542       


Q ss_pred             -------------CCCeEEEcC-CC--eEEecCC-C-CCcccEEE--ccCC-cEEEEeC-CCccCCcccccccccccCCc
Q 018705          113 -------------EKGLLKVTE-EG--VEAIVPD-A-SFTNDVIA--ASDG-TLYFTVA-STKYTPTDFYKDMAEGKPYG  170 (351)
Q Consensus       113 -------------~~gl~~~~~-~g--~~~l~~~-~-~~~n~l~~--d~dG-~ly~t~~-~~~~~~~~~~~~~~~~~~~g  170 (351)
                                   .+.+..++- ++  ...+..+ . ..|..|.+  +|+| ..|+++. +.+             .-.+
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~-------------~Lss  280 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK-------------DLSS  280 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT-------------TCCE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc-------------CCCc
Confidence                         345666663 44  4444332 1 46777766  8998 5788764 000             0123


Q ss_pred             eEEEEeCCCCeEEEee-----c-----C-----------ccccceEEEcCCCCEEEEEecce----eEEeecCCCCce--
Q 018705          171 QLRKYDPKLKETTVLH-----E-----G-----------FYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGIL--  223 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~-----~-----~-----------~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~--  223 (351)
                      .|+.|..+.|+.+...     .     .           ...|.+|.+|+||++||++....    .|.+.+....+.  
T Consensus       281 ~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~  360 (462)
T 2ece_A          281 SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG  360 (462)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            4443322224332111     0     0           24578999999999999999876    455543211111  


Q ss_pred             eEEec------------cCCCCCCceEECCCCC-EEEEE
Q 018705          224 DAFIE------------NLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       224 ~~~~~------------~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      .+...            .+.+.|.++.++++|+ ||++.
T Consensus       361 ~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          361 KVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            11111            1224699999999996 88885

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.52  E-value=6.4e-05  Score=71.00  Aligned_cols=187  Identities=9%  Similarity=0.051  Sum_probs=109.7

Q ss_pred             eCCCeEEEEE-cCCEEEEEEcCCC----eEEEEe-------ecC-CccccceEEcCCCCEEEEeCC-------CCeEEEc
Q 018705           61 VSKGALYTAT-RDGWVKYFILHNE----TLVNWK-------HID-SQSLLGLTTTKDGGVILCDNE-------KGLLKVT  120 (351)
Q Consensus        61 ~~~g~lyv~~-~~g~I~~~d~~~g----~~~~~~-------~~~-~~p~~gl~~d~~G~L~v~d~~-------~gl~~~~  120 (351)
                      .+...||+.. .+++|+.+|..+.    ++....       ..+ .+|+ ++...++| +||+..+       ++++.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            3577888855 5788999997543    332222       112 3788 99999999 9996544       3688888


Q ss_pred             C-CC--eEEecCC---CCCcccEEEccCCcEEEEe-CCCc--cCCcccccccccccCCceEEEEeCCCCeEEEeecC---
Q 018705          121 E-EG--VEAIVPD---ASFTNDVIAASDGTLYFTV-ASTK--YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---  188 (351)
Q Consensus       121 ~-~g--~~~l~~~---~~~~n~l~~d~dG~ly~t~-~~~~--~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---  188 (351)
                      . ++  +..+...   ..+++++-+.++++++++. ....  +.. .+....+++....+|..||.++++......-   
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~-g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED-GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT-CCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc-ccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            5 45  5555422   2567788889998755544 2210  100 0111111113356899999887765433222   


Q ss_pred             ccccceEEE--cCCCCEEEEEec------ce---eEEeecCCCCceeEE-------eccC----------CCCCCceEEC
Q 018705          189 FYFANGIAL--SKNEDFVVVCES------WK---RYWLKGDRAGILDAF-------IENL----------PGGPDNINLA  240 (351)
Q Consensus       189 ~~~~ngi~~--~~dg~~lyv~~~------~~---~~~i~~~~~~~~~~~-------~~~~----------~g~pd~i~~d  240 (351)
                      ...|.+|.+  +|+++++|++..      .+   .++.++........+       ...+          +..|.+|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            246778877  999999999654      33   222222100000110       0011          2467889999


Q ss_pred             CCCC-EEEEEe
Q 018705          241 PDGS-FWIGLI  250 (351)
Q Consensus       241 ~~G~-lwva~~  250 (351)
                      +||+ |||+.-
T Consensus       330 ~DGrfLYVSnr  340 (462)
T 2ece_A          330 LDDKFLYLSLW  340 (462)
T ss_dssp             TTSCEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            9996 899864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.52  E-value=7.1e-05  Score=70.22  Aligned_cols=241  Identities=12%  Similarity=0.141  Sum_probs=138.4

Q ss_pred             CCCcCCCceEEEee-CCCeEEEEEcCCEEEEEEcCC---Ce----EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEE
Q 018705           48 EGCVNHPEDVSVVV-SKGALYTATRDGWVKYFILHN---ET----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV  119 (351)
Q Consensus        48 ~~~~~~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~---g~----~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~  119 (351)
                      .+.-..-.++++.+ ++..+.++..||.|..||..+   +.    ...+ ....... .+++.++++++++....+.+++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~-~~~~~~~~~~l~s~s~dg~i~v  137 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT-QITMIPNFDAFAVSSKDGQIIV  137 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE-EEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE-EEEEeCCCCEEEEEeCCCEEEE
Confidence            44334567899997 667888899999999999754   32    1122 2334566 8999999986666555565555


Q ss_pred             cC-----CC--eEEecCC------------CCCcccEE--EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC
Q 018705          120 TE-----EG--VEAIVPD------------ASFTNDVI--AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (351)
Q Consensus       120 ~~-----~g--~~~l~~~------------~~~~n~l~--~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  178 (351)
                      ..     ++  ...+...            ...+..+.  ..+++.+.++.+.                 ++.|..||..
T Consensus       138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~  200 (437)
T 3gre_A          138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----------------LSRVIIFDIR  200 (437)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----------------TSEEEEEETT
T ss_pred             EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----------------CCeEEEEeCC
Confidence            41     33  2211110            01222222  3345555444432                 5789999988


Q ss_pred             CCeEEEeecC---ccccceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCce----EECCCCCEEEE
Q 018705          179 LKETTVLHEG---FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNI----NLAPDGSFWIG  248 (351)
Q Consensus       179 ~~~~~~~~~~---~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i----~~d~~G~lwva  248 (351)
                      +++.......   ......++++|+++.|+.+..++  ++|  +...++. ..+..........+    .++++|.+.++
T Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s  278 (437)
T 3gre_A          201 TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW--DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG  278 (437)
T ss_dssp             TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE--ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred             CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE--EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence            7765443332   34677899999999777777666  455  2222222 11110111111234    23355655554


Q ss_pred             EecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCC-----------------
Q 018705          249 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT-----------------  311 (351)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~-----------------  311 (351)
                      ..                                    ..+.|..+|..+++.+..+....+.                 
T Consensus       279 ~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          279 GS------------------------------------SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             ES------------------------------------TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             Ec------------------------------------CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence            32                                    2345777787567777777643211                 


Q ss_pred             -----cccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          312 -----YISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       312 -----~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                           ....++++...++++.+.....+.|..+++...+
T Consensus       323 ~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          323 FCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             CCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred             ecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence                 1233666666677766666667889999987654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.50  E-value=1.1e-05  Score=79.22  Aligned_cols=173  Identities=15%  Similarity=0.110  Sum_probs=100.0

Q ss_pred             CceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeecC-CccccceEEcCCCCEEEEeC--CC---CeEEEcC--CC-
Q 018705           54 PEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDN--EK---GLLKVTE--EG-  123 (351)
Q Consensus        54 pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~d~--~~---gl~~~~~--~g-  123 (351)
                      -.++++++++..+.. +..+|.+..|+.++++.+.+.... .... .++++++..+|.++.  +.   .++.++.  +| 
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~-~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEEC-EECTTCSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccc-cccCCCCeEEEEeccCCCCcceEEEEEeccCCCc
Confidence            357888887777654 445887766666577766654433 2344 677777733455553  12   3555555  66 


Q ss_pred             eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      ...+... ......++++|| .++++...                 .+.+..||.++++.+.+.....  +.+++||||+
T Consensus       103 ~~~l~~~-~~~~~~~~s~dg~~~~~~s~~-----------------~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~  162 (582)
T 3o4h_A          103 EQRLEAV-KPMRILSGVDTGEAVVFTGAT-----------------EDRVALYALDGGGLRELARLPG--FGFVSDIRGD  162 (582)
T ss_dssp             CEECTTS-CSBEEEEEEECSSCEEEEEEC-----------------SSCEEEEEEETTEEEEEEEESS--CEEEEEEETT
T ss_pred             cccccCC-CCceeeeeCCCCCeEEEEecC-----------------CCCceEEEccCCcEEEeecCCC--ceEEECCCCC
Confidence            4444332 234455777777 34444322                 1345577877787766654322  7899999999


Q ss_pred             EEEEEecc----eeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 018705          203 FVVVCESW----KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       203 ~lyv~~~~----~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      .|+++...    ..+++-+...++.+.+.. ..+....+++++||+..++
T Consensus       163 ~la~~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          163 LIAGLGFFGGGRVSLFTSNLSSGGLRVFDS-GEGSFSSASISPGMKVTAG  211 (582)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCCEEECC-SSCEEEEEEECTTSCEEEE
T ss_pred             EEEEEEEcCCCCeEEEEEcCCCCCceEeec-CCCccccceECCCCCEEEE
Confidence            88765544    244444433444444432 2233356788999975443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.50  E-value=1.3e-05  Score=72.62  Aligned_cols=179  Identities=9%  Similarity=0.027  Sum_probs=104.9

Q ss_pred             CCceEEEeeC---CCeEEEEEcCCEEEEEEcCCCe--EEEEeecCCccccce------EEcCCCCEEEEeCCCCeEEEc-
Q 018705           53 HPEDVSVVVS---KGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGL------TTTKDGGVILCDNEKGLLKVT-  120 (351)
Q Consensus        53 ~pe~i~~d~~---~g~lyv~~~~g~I~~~d~~~g~--~~~~~~~~~~p~~gl------~~d~~G~L~v~d~~~gl~~~~-  120 (351)
                      ...++++.++   +..++++..+|.|..||..+++  ...+........ .+      +++++++++++....+.+++. 
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            3467888866   4778899999999999987665  334333333344 55      346788766655555555554 


Q ss_pred             -CCC---eEEecCCC----CCcccEE----EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC
Q 018705          121 -EEG---VEAIVPDA----SFTNDVI----AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (351)
Q Consensus       121 -~~g---~~~l~~~~----~~~n~l~----~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  188 (351)
                       .++   ...+....    ..+.+++    ++++|.+.++...                 +|.|..||..+++.......
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~  208 (357)
T 3i2n_A          146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------NGDIKLFDLRNMALRWETNI  208 (357)
T ss_dssp             TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------TSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------CCeEEEEECccCceeeecCC
Confidence             222   44443221    2455666    5678876666543                 46899999988876554444


Q ss_pred             ccccceEEEcC---CCCEEEEEecce--eEE-eecC-CCCceeEEe-ccCCCCCCceEECCCCC-EEEEE
Q 018705          189 FYFANGIALSK---NEDFVVVCESWK--RYW-LKGD-RAGILDAFI-ENLPGGPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       189 ~~~~ngi~~~~---dg~~lyv~~~~~--~~~-i~~~-~~~~~~~~~-~~~~g~pd~i~~d~~G~-lwva~  249 (351)
                      ......++++|   +++.++++..++  ++| +... ......... ....+....+++.++|. +.++.
T Consensus       209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            45677899999   888777776665  333 2221 111111110 01222335577888887 44443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.49  E-value=4.2e-05  Score=69.02  Aligned_cols=224  Identities=11%  Similarity=0.093  Sum_probs=133.8

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeE-EEEEcC-------------CEEEEEEcCCCeEEEEeecCCccccceEEcCCC-C
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGAL-YTATRD-------------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-G  106 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~l-yv~~~~-------------g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G-~  106 (351)
                      ..++|..+   .+..|..+  ++.+ |+...+             ..|++++.++++.+.+...   +  +.++..+| .
T Consensus        48 ~~~~l~~~---~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~  117 (302)
T 3s25_A           48 NIHKLSND---TAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNY  117 (302)
T ss_dssp             SCEEEEEE---EEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTE
T ss_pred             CCEEccCC---ceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCE
Confidence            34555443   24455554  6655 455543             4799999866654444321   1  33444444 6


Q ss_pred             EEEEe----CCCCeEEEcCCC--eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC
Q 018705          107 VILCD----NEKGLLKVTEEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       107 L~v~d----~~~gl~~~~~~g--~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                      ||.++    ....|++++.+|  .+.+.....    .+++++| .||+++..                 ...|++.+.++
T Consensus       118 Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g-----------------~~~Iy~~~l~g  176 (302)
T 3s25_A          118 IYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPK-----------------NGQLYRYDTAS  176 (302)
T ss_dssp             EEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTT-----------------TCCEEEEETTT
T ss_pred             EEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCC-----------------CceEEEEECCC
Confidence            88877    234678887666  565654422    3456766 79999863                 34799999887


Q ss_pred             CeEEEeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchh
Q 018705          180 KETTVLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTG  256 (351)
Q Consensus       180 ~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~  256 (351)
                      +..+.+..+   +..+.++|+++.||+++...  ++...+...+..+.+.+.  ..   ..+|++|. ||-+...     
T Consensus       177 ~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~---~~~~~~g~~Iy~~~~~-----  243 (302)
T 3s25_A          177 QSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI---EHYNVYGSLIFYQRGG-----  243 (302)
T ss_dssp             TEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE---EEEEEETTEEEEEECS-----
T ss_pred             CCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc---ceEEECCCEEEEEECC-----
Confidence            776666543   22345778999999988654  444333222333444321  11   23555564 5443221     


Q ss_pred             hhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeE
Q 018705          257 VRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI  336 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i  336 (351)
                                                    ....+.+++. +|...+.+...+      +.++...++.||........|
T Consensus       244 ------------------------------~~~~i~~~~~-DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i  286 (302)
T 3s25_A          244 ------------------------------DNPALCVVKN-DGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKE  286 (302)
T ss_dssp             ------------------------------SSCEEEEEET-TSCCCEEEEESC------EEEEEECSSEEEEEETTTCCE
T ss_pred             ------------------------------CCcEEEEEEC-CCCccEEeeCCc------cceEEEeCCEEEEEECCCCeE
Confidence                                          0136888898 886555554211      335667899999999888889


Q ss_pred             EEEeCCCCCC
Q 018705          337 GILPLDGPEP  346 (351)
Q Consensus       337 ~~~~~~~~~~  346 (351)
                      .++++.++.-
T Consensus       287 ~~~~~dGs~~  296 (302)
T 3s25_A          287 YCTSTQNPDT  296 (302)
T ss_dssp             EEEESSSCCS
T ss_pred             EEEECCCCCc
Confidence            9999888753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.49  E-value=3.4e-06  Score=82.23  Aligned_cols=189  Identities=12%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             CCCeEEEEEc-CCEEEEEEcCCCeEEEEee--cCCccccceEEc--CCC-CEEEEeCC-----------------CC-eE
Q 018705           62 SKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTT--KDG-GVILCDNE-----------------KG-LL  117 (351)
Q Consensus        62 ~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d--~~G-~L~v~d~~-----------------~g-l~  117 (351)
                      ++..+|+... +++|.++|.++.+...+..  .+..|. |+++.  +++ .+|++...                 .+ +-
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4678898664 6789999998887654333  245689 99984  677 56776411                 11 33


Q ss_pred             EEcC-CC--eEEecCCCCCcccEEEccCC-cEEEEeCCCccC---------Ccccc--c------c-ccccc--CCceEE
Q 018705          118 KVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYT---------PTDFY--K------D-MAEGK--PYGQLR  173 (351)
Q Consensus       118 ~~~~-~g--~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~---------~~~~~--~------~-~~~~~--~~g~l~  173 (351)
                      .++. +.  ..++..+ ..|..+++++|| .+|+|+..+.-.         ..++.  .      . +-.+.  .-+.|.
T Consensus       179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            3332 22  2222222 479999999998 577777432110         00000  0      0 00010  024588


Q ss_pred             EEeCCC--CeE-EEeecCccccceEEEcCCCCEEEEEecce----eEEeecC------CCC-ceeEEec-cCCCCCCceE
Q 018705          174 KYDPKL--KET-TVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGD------RAG-ILDAFIE-NLPGGPDNIN  238 (351)
Q Consensus       174 ~~d~~~--~~~-~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~------~~~-~~~~~~~-~~~g~pd~i~  238 (351)
                      .+|..+  ++. .........|.|+.++|||+++|+++...    .|.+...      +.. +..+... .....|..++
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            999886  333 22333346899999999999999988665    3333311      000 1112222 2223588999


Q ss_pred             ECCCCCEEEEEecC
Q 018705          239 LAPDGSFWIGLIKM  252 (351)
Q Consensus       239 ~d~~G~lwva~~~~  252 (351)
                      +|++|++|++....
T Consensus       338 F~~dG~aY~t~~ld  351 (595)
T 1fwx_A          338 FDGRGNAYTSLFLD  351 (595)
T ss_dssp             ECTTSEEEEEETTT
T ss_pred             ECCCCeEEEEEecC
Confidence            99999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.49  E-value=1e-05  Score=76.45  Aligned_cols=179  Identities=10%  Similarity=0.101  Sum_probs=109.8

Q ss_pred             CceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcC-CCCEEEEeCCCCeEEEcC--CC-eE
Q 018705           54 PEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE--EG-VE  125 (351)
Q Consensus        54 pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~~--~g-~~  125 (351)
                      -.+|+|.|.+ ..|.+|..||.|..||..+++.....   ...+... +|++.+ +++++++....+.++++.  .+ .+
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            4589998755 46788999999999998665432222   2234456 999996 677777766677777773  34 44


Q ss_pred             EecCCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705          126 AIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       126 ~l~~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      .+....   .....++++++|.+.++.+.                 +|.|..||..++.+..+...-...++|+++|++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence            443321   45678899999987776554                 5679999987655443333334567899999987


Q ss_pred             EEE-EEecce--eEEe-ecCCCCceeEEe-ccCCCCCCceEECCCCCEEEEEec
Q 018705          203 FVV-VCESWK--RYWL-KGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       203 ~ly-v~~~~~--~~~i-~~~~~~~~~~~~-~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .++ .+..++  ++|- .... ....... .........++++++|++.++...
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVR-GKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCC-SSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             eEEEEecCcceeeEEeccccc-ccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            444 444444  5652 2111 1111111 011112245678888886666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.48  E-value=6.9e-05  Score=67.88  Aligned_cols=110  Identities=10%  Similarity=-0.001  Sum_probs=74.6

Q ss_pred             CCceEEEeeC----CCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcC-CCCEEEEeCCCCeEEEc--CCC-
Q 018705           53 HPEDVSVVVS----KGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG-  123 (351)
Q Consensus        53 ~pe~i~~d~~----~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~~g-  123 (351)
                      ...++++.++    +..++++..+|.|..||..+++.. .+........ .+++.+ +++++++....+.+++.  .++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            3467888876    346888999999999998777653 3333445566 899998 88776665555555555  355 


Q ss_pred             -eEEec---CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705          124 -VEAIV---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (351)
Q Consensus       124 -~~~l~---~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  180 (351)
                       ...+.   .....+.+++++++|...++.+.                 +|.|..||..++
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~  193 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-----------------DHSLKLWRINSK  193 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESCSH
T ss_pred             EEEEecccccccCceeEEEECCCCCEEEEecC-----------------CCCEEEEECCCC
Confidence             44442   22367899999999977666543                 356777776644

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.48  E-value=2.9e-05  Score=73.25  Aligned_cols=180  Identities=12%  Similarity=0.092  Sum_probs=108.1

Q ss_pred             CCCceEEEeeCC-CeEEEEEcCCEEEEEEcCC----------C-eEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEE
Q 018705           52 NHPEDVSVVVSK-GALYTATRDGWVKYFILHN----------E-TLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLK  118 (351)
Q Consensus        52 ~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~----------g-~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~  118 (351)
                      ..+.++++.|++ ..++++..+|.|..|+..+          . ....+......+. ++++++++. ++++....|.++
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEE
Confidence            457899999753 4667788899999999754          1 1233333445567 999999886 666655556555


Q ss_pred             Ec--CCC----e-----EEecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe----E
Q 018705          119 VT--EEG----V-----EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----T  182 (351)
Q Consensus       119 ~~--~~g----~-----~~l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~  182 (351)
                      +.  ..+    .     ..+......++++++++ ++.++++.+.                 .|.|..||..++.    .
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCSCSSSCS
T ss_pred             EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCCCcce
Confidence            54  231    1     12222225688999999 5677777654                 5689999877542    2


Q ss_pred             EEeecCccccceEEEcCCCCE-EEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEe
Q 018705          183 TVLHEGFYFANGIALSKNEDF-VVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       183 ~~~~~~~~~~ngi~~~~dg~~-lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                      ..+......++.|+++|++.. +..+...+  ++|--.........+. ...+....+.+.++|. ++++..
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence            233333456789999999874 44555555  4442111111122232 2223345678888885 555544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.47  E-value=0.00016  Score=65.72  Aligned_cols=180  Identities=15%  Similarity=0.139  Sum_probs=107.3

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCC--CCEEEEeCCCCeEEEc--CCC-
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT--EEG-  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~--~~g-  123 (351)
                      ..-.++++++++..+.++..+|.|..|+..++..+   .+........ .+++.++  ++++++....+.++++  .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            34568899987778888999999999987543332   2222334455 8888765  7766655555655655  244 


Q ss_pred             eEE---ecCCCCCcccEEEccC--CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe---EEEeecCccccceE
Q 018705          124 VEA---IVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFANGI  195 (351)
Q Consensus       124 ~~~---l~~~~~~~n~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~ngi  195 (351)
                      ...   +......+.+++++++  |.+.++.+.                 ++.|..||..+++   ...+.........+
T Consensus        91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~  153 (379)
T 3jrp_A           91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNSA  153 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred             eeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence            222   2222367889999998  876666543                 4678888876552   22222333456788


Q ss_pred             EEcC-------------CCCEEEEEecce--eEE-eecCCCCceeEE--eccCCCCCCceEECCC---CCEEEEEe
Q 018705          196 ALSK-------------NEDFVVVCESWK--RYW-LKGDRAGILDAF--IENLPGGPDNINLAPD---GSFWIGLI  250 (351)
Q Consensus       196 ~~~~-------------dg~~lyv~~~~~--~~~-i~~~~~~~~~~~--~~~~~g~pd~i~~d~~---G~lwva~~  250 (351)
                      +++|             +++.++.+..++  ++| +.... ......  .....+....++++++   |++.++..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EECCCC----------CTTCEEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9998             688777766665  444 22211 111111  1112223456788888   66666554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.46  E-value=3e-05  Score=71.21  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=109.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      -.+++++|++..|.++..||.|..||..+++.. .+........ .+++.+++ .++++....+.++++  .++  ...+
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE-EEEecCCCCCceeeeccccccccccccccceeeee
Confidence            468899987788899999999999999888664 3333344556 89999887 576655555666665  344  4444


Q ss_pred             cCC--CCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCCCCE
Q 018705          128 VPD--ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       128 ~~~--~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      ...  ...++.+++.+++ .++++.+.                 +|.|..||..+++. ..+.......+.++++|++..
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~-----------------dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDE-----------------NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEET-----------------TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC
T ss_pred             ecceeeccceeeeecCCCCcceEEecc-----------------CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe
Confidence            322  1457788998864 66665443                 46789999876654 233333445678999999853


Q ss_pred             -EEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEe
Q 018705          204 -VVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       204 -lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                       |..+..++  ++|  +...++...+. ...+....+++.++|. +.++..
T Consensus       272 ~lasgs~D~~i~vw--d~~~~~~~~~~-~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          272 FLASLSEDCSLAVL--DSSLSELFRSQ-AHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             CEEEEETTSCEEEE--CTTCCEEEEEC-CCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEEEEeCCCeEEEE--ECCCCcEEEEc-CCCCCEEEEEEeCCCCeEEEEEc
Confidence             44455555  565  32333322222 2233345678888886 555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.46  E-value=9.7e-05  Score=68.68  Aligned_cols=195  Identities=16%  Similarity=0.071  Sum_probs=109.6

Q ss_pred             CCCceEEEeeCCCeEEEEEc--CCEEEEEEcCCCeEEEE-eecCCccccceEEcCCC-CEEEEeCCCC-eEEEcCCC-eE
Q 018705           52 NHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDG-GVILCDNEKG-LLKVTEEG-VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~--~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G-~L~v~d~~~g-l~~~~~~g-~~  125 (351)
                      ..|++++++|+++.+|++..  ++.|..+| +++++..- ...   |- ++.+.+++ +.|++....+ ++.++.++ ..
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~-~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~  199 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PT-CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---Cc-eEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence            46899999998899999874  47899999 88876432 222   22 23333333 4555444433 33333333 11


Q ss_pred             -EecC----CCCCc--ccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee----------c
Q 018705          126 -AIVP----DASFT--NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----------E  187 (351)
Q Consensus       126 -~l~~----~~~~~--n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----------~  187 (351)
                       ....    ....|  ....++++ +.+|+...                  .+.++.+|..++..+...          .
T Consensus       200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------------------~~~v~vid~~~~~~~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY------------------SGKILQADISAAGATNKAPIDALSGGRKA  261 (373)
T ss_pred             EEEeccccccCCcceeecceeEecCCEEEEEcC------------------CceEEEEeccCCcceEeeeeeecCCcccc
Confidence             1110    00111  12233443 34555442                  246777777544322211          1


Q ss_pred             Cccccce---EEEcCCCCEEEEEecc----------eeEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCC
Q 018705          188 GFYFANG---IALSKNEDFVVVCESW----------KRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMN  253 (351)
Q Consensus       188 ~~~~~ng---i~~~~dg~~lyv~~~~----------~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~  253 (351)
                      ....|.|   +++++|++.+|++...          +.+++-+...++....+ ..++.|.++++++||+ +++....  
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~--  338 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSA--  338 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcC--
Confidence            1123666   8999999999997531          24555444333332222 3455699999999998 5555432  


Q ss_pred             chhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEE
Q 018705          254 QTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF  305 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~  305 (351)
                                                       ..+.|..||.++++++..+
T Consensus       339 ---------------------------------~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          339 ---------------------------------GTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ---------------------------------CCCeEEEEECCCCCEEeee
Confidence                                             1136889999778888774

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.46  E-value=0.00017  Score=67.55  Aligned_cols=232  Identities=11%  Similarity=0.040  Sum_probs=134.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC---eEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG---VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g---~~~l  127 (351)
                      -.+++|++++..+.++..||.|..||..+++... +........ .+.  .++.+.++....+.+++. . ..   ...+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEE--EETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEe--eCCCEEEEEeCCCceeEeeecccceeeEEe
Confidence            3589999877888999999999999998886533 222223333 444  456666555455555554 2 22   4444


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-----EEeecCccccceEEEcCCCC
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-----TVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-----~~~~~~~~~~ngi~~~~dg~  202 (351)
                      .........+...++|...++...                 ++.+..|+..+++.     ............++++|++.
T Consensus       227 ~~h~~~~~~~~~~~~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~  289 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS  289 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT
T ss_pred             cccccceeeeeecCCCCeeeeeec-----------------cccceEEeeccccccceeeeeecccCCceeeeeeCCCcc
Confidence            443356778888899877666543                 45677777654431     12222223456788888776


Q ss_pred             EEEE-Eec--ce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchh
Q 018705          203 FVVV-CES--WK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  277 (351)
Q Consensus       203 ~lyv-~~~--~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                      .++. +..  ++  ++|  +...+....... .......+.+.++++..++...                          
T Consensus       290 ~~la~~~gs~D~~I~iw--d~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg--------------------------  340 (420)
T 4gga_A          290 NVLATGGGTSDRHIRIW--NVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG--------------------------  340 (420)
T ss_dssp             TEEEEEECTTTCEEEEE--ETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEEC--------------------------
T ss_pred             cEEEEEeecCCCEEEEE--eCCccccceeec-cccceeeeeecCCCCeEEEEEe--------------------------
Confidence            4443 321  23  455  222333222221 1222345667778875555432                          


Q ss_pred             hcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCCC
Q 018705          278 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  346 (351)
Q Consensus       278 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~~  346 (351)
                              ...+.|..+|..+++.+..+..+.+    .++++... +|++.++......|..+++....|
T Consensus       341 --------~~d~~I~iwd~~~~~~v~~l~gH~~----~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          341 --------FAQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             --------TTTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             --------cCCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence                    1224577778768888888876544    47777765 455444444456677778766555

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.45  E-value=0.00052  Score=62.52  Aligned_cols=146  Identities=10%  Similarity=0.094  Sum_probs=97.1

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~  124 (351)
                      ..-.+++++|++..|.++..|+.|..|+..++..+   .+........ .+++.++|+++++....+.+++.  .++  .
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence            34568999987788899999999999987666543   2222334456 89999999877765555655555  222  2


Q ss_pred             ---EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE---EeecCccccceEEEc
Q 018705          125 ---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFANGIALS  198 (351)
Q Consensus       125 ---~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~~~~~ngi~~~  198 (351)
                         ..+......++.++++|+|.+.++.+.                 ++.|..||..+++..   .+.........++++
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s  203 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDDWVCCATLEGHESTVWSLAFD  203 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEecCcCCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCCEEEEEEecCCCCceEEEEEC
Confidence               223333356888999999987766543                 456777776555432   222233456789999


Q ss_pred             CCCCEEEEEecce--eEEe
Q 018705          199 KNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i  215 (351)
                      |+++.|..+..++  ++|-
T Consensus       204 p~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          204 PSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEec
Confidence            9999777776666  6663

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.44  E-value=3.9e-05  Score=76.94  Aligned_cols=130  Identities=12%  Similarity=0.009  Sum_probs=80.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--EEEeecC-----------------CccccceEEcCCCCEEEEeCCC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWKHID-----------------SQSLLGLTTTKDGGVILCDNEK  114 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~-----------------~~p~~gl~~d~~G~L~v~d~~~  114 (351)
                      ..++.|.  ++.++....+| | .+|..+|+.  +.+....                 ..+. .+++++++.+.++. ..
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~-~~~~spd~~~~~~~-~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF-RTLDAGRGLVVLFT-QG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCE-EEEETTTTEEEEEE-TT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce-eEEECCCCeEEEEE-CC
Confidence            3456776  55565555566 8 999888876  4443221                 2355 88999996555554 34


Q ss_pred             CeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-----CeEEEee
Q 018705          115 GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-----KETTVLH  186 (351)
Q Consensus       115 gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-----~~~~~~~  186 (351)
                      .++.++. ++ ...+......+.+++++|||+ |.++.                   .+.|+.+|..+     ++...+.
T Consensus       102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~-------------------~~~i~v~~~~~~~~~~g~~~~~~  162 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR-------------------NHNLYIARGGKLGEGMSRAIAVT  162 (706)
T ss_dssp             EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE-------------------TTEEEEEECBCTTSCCCCCEESC
T ss_pred             EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE-------------------CCeEEEEecCcccccCCCcEEec
Confidence            5666664 55 554443335678899999995 44432                   24799998877     6655543


Q ss_pred             cCccc---------------cceEEEcCCCCEEEEEe
Q 018705          187 EGFYF---------------ANGIALSKNEDFVVVCE  208 (351)
Q Consensus       187 ~~~~~---------------~ngi~~~~dg~~lyv~~  208 (351)
                      .....               +.++++||||+.|+++.
T Consensus       163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~  199 (706)
T 2z3z_A          163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR  199 (706)
T ss_dssp             SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred             cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence            32222               47899999999888765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.42  E-value=1.1e-05  Score=74.08  Aligned_cols=181  Identities=5%  Similarity=-0.091  Sum_probs=103.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe----EEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC---
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG---  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~----~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g---  123 (351)
                      ...++++.+++..+.++..||.|..||..+++    ...+........ .+++.++|+++++....+.+++..  .+   
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            34688999777788899999999999987765    223333344556 899999987555444455566552  22   


Q ss_pred             --eEEecC-CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC------------------CeE
Q 018705          124 --VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL------------------KET  182 (351)
Q Consensus       124 --~~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~------------------~~~  182 (351)
                        .+.+.. ....+++++++++|.+.++.+.                 ++.|..||..+                  ++.
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhhh
Confidence              233433 3367889999999987766543                 35676776532                  111


Q ss_pred             EEeecCccccceEEEcCCCCEEEEEecce--eEEe-ecCCCCc--eeEEeccCCCCCCceEECCCCCEEEEEecC
Q 018705          183 TVLHEGFYFANGIALSKNEDFVVVCESWK--RYWL-KGDRAGI--LDAFIENLPGGPDNINLAPDGSFWIGLIKM  252 (351)
Q Consensus       183 ~~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i-~~~~~~~--~~~~~~~~~g~pd~i~~d~~G~lwva~~~~  252 (351)
                      ............++++|+++.|+.+..++  ++|- .......  ...+. ...+....++++++|++.++....
T Consensus       199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSS
T ss_pred             hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCC
Confidence            11112223467899999999777776665  4442 2211100  11111 112223567888888877665443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.42  E-value=3.9e-05  Score=72.44  Aligned_cols=244  Identities=11%  Similarity=0.061  Sum_probs=136.8

Q ss_pred             CCceEEEeeC-CCeEEEEEcCCEEEEEEcCCCeEEEEeecC---CccccceEEcCCCCEEEEeCCCCeEEEc-CCC--eE
Q 018705           53 HPEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~-~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~---~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~~  125 (351)
                      .-.+|+|.|. +..|+++..||.|..||.+++..+.+....   .... .++++++|+++++....+.+++. .++  +.
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKELW  244 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBCC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCcceeE
Confidence            3468999874 457888899999999998766665543322   2235 78999999887776666666665 344  44


Q ss_pred             EecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee---cCccccceEEEcCC
Q 018705          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH---EGFYFANGIALSKN  200 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~---~~~~~~ngi~~~~d  200 (351)
                      .+......+++++++|++. ++++.+.                 ++.|..||..+.+.. .+.   ......+.++++||
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd  307 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASV-----------------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD  307 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEET-----------------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT
T ss_pred             EEecccceEEeeeecCCCceEEEEecC-----------------cceeeEEecccccccceEEEeeeccccccceeECCC
Confidence            3333336788999999875 5555433                 356677776543211 111   11223567889999


Q ss_pred             CCEEEEEecce--eEEeecCCCCce-eEEeccC-----CCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHh
Q 018705          201 EDFVVVCESWK--RYWLKGDRAGIL-DAFIENL-----PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDA  272 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~-----~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      |+.|+.+..++  ++|-..  .++. ..+....     ...+-...+.+++.+.+..........               
T Consensus       308 g~~l~s~~~D~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------  370 (435)
T 4e54_B          308 GARLLTTDQKSEIRVYSAS--QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK---------------  370 (435)
T ss_dssp             SSEEEEEESSSCEEEEESS--SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC---------------
T ss_pred             CCeeEEEcCCCEEEEEECC--CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE---------------
Confidence            99777776666  555321  1111 1111100     011223456677765554432211100               


Q ss_pred             ccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEE-EE-CCEEEEEecCCCeEEEEeCCCC
Q 018705          273 YPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EF-DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~-~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                          ++     .+.....|..+|.++|+.+..+..+..   ..+.++. .+ +|++.+++. .+.|..+++...
T Consensus       371 ----~~-----~~~~~~~i~iwd~~~g~~~~~l~~~~~---~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          371 ----SC-----TPYELRTIDVFDGNSGKMMCQLYDPES---SGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             ----CS-----STTCCCCEEEECSSSCCEEEEECCSSC---CCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             ----EE-----EecCCCEEEEEECCCCcEEEEEeCCCC---CcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence                00     112223466778768888887765432   2344443 33 455555543 667877776543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.42  E-value=4.6e-06  Score=77.54  Aligned_cols=178  Identities=12%  Similarity=0.068  Sum_probs=103.5

Q ss_pred             CCceEEEeeCCC-eEEEE----------EcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCCCCEEEEeCCCCeEE
Q 018705           53 HPEDVSVVVSKG-ALYTA----------TRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK  118 (351)
Q Consensus        53 ~pe~i~~d~~~g-~lyv~----------~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~  118 (351)
                      ...+++++|++. .++++          ..+|.|..|+..+++..   .......... .+++.++|+++++....+.++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFN-DLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEE-EEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceE-EEEECCCCCeEEEEccCCeEE
Confidence            456788887665 67777          67888999998666421   1112234456 899999997655544445455


Q ss_pred             Ec--CC---C---eEEecCCCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe------EE
Q 018705          119 VT--EE---G---VEAIVPDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------TT  183 (351)
Q Consensus       119 ~~--~~---g---~~~l~~~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~------~~  183 (351)
                      +.  ..   +   ...+......+++++++++ +.++++.+.                 +|.|..||..+++      ..
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----------------NGEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----------------SSCEEBCBTTTTSSCTTTCCC
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----------------CCeEEEEECCCCccccccccc
Confidence            44  23   2   3333333367899999998 677776654                 4678888877654      11


Q ss_pred             Ee----ecCccccceEEEcCC-CCEEEEEecce--eEEeecCCCCcee-EEeccC-----CCCCCceEECCCC-CEEEEE
Q 018705          184 VL----HEGFYFANGIALSKN-EDFVVVCESWK--RYWLKGDRAGILD-AFIENL-----PGGPDNINLAPDG-SFWIGL  249 (351)
Q Consensus       184 ~~----~~~~~~~ngi~~~~d-g~~lyv~~~~~--~~~i~~~~~~~~~-~~~~~~-----~g~pd~i~~d~~G-~lwva~  249 (351)
                      ..    .........++++++ ++.++.+..++  ++|  +...++.. .+....     ......++++++| +++++.
T Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW--DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE--ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE--ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence            11    112235678999999 56555555555  444  22222221 121110     2234557888887 455554


Q ss_pred             e
Q 018705          250 I  250 (351)
Q Consensus       250 ~  250 (351)
                      .
T Consensus       234 ~  234 (416)
T 2pm9_A          234 T  234 (416)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.37  E-value=6.6e-05  Score=70.10  Aligned_cols=170  Identities=10%  Similarity=0.031  Sum_probs=96.5

Q ss_pred             EeeCCCeEEEEEcCCEEEEEEcCC--CeEEEEe--ecCCccccceEEcC--CCCEEEEeCCC----CeEEEcCCC--eEE
Q 018705           59 VVVSKGALYTATRDGWVKYFILHN--ETLVNWK--HIDSQSLLGLTTTK--DGGVILCDNEK----GLLKVTEEG--VEA  126 (351)
Q Consensus        59 ~d~~~g~lyv~~~~g~I~~~d~~~--g~~~~~~--~~~~~p~~gl~~d~--~G~L~v~d~~~----gl~~~~~~g--~~~  126 (351)
                      .| +.+.||+++..| +++++..+  ..++...  ....... .|++|+  +++||++....    ++++....|  .+.
T Consensus        19 ~d-~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~   95 (394)
T 3b7f_A           19 ES-GPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTE   95 (394)
T ss_dssp             CC-SCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEE
T ss_pred             CC-CCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceE
Confidence            45 578999999876 88887644  3565442  2234456 899998  78999987655    688776555  444


Q ss_pred             ecCCC--------------CCcccEEEcc---CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc
Q 018705          127 IVPDA--------------SFTNDVIAAS---DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF  189 (351)
Q Consensus       127 l~~~~--------------~~~n~l~~d~---dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  189 (351)
                      +....              ..+.+|++++   .+.+|+...                  .++|++.+..+...+.+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl~~S~DgG~tW~~~~~~~  157 (394)
T 3b7f_A           96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGLFRSTDHGASWEPVAGFN  157 (394)
T ss_dssp             CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEEEEESSTTSBCEECHHHH
T ss_pred             CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcEEEEcCCCCCeEECcCcc
Confidence            43211              1233577885   568898653                  247888865544444442100


Q ss_pred             -------------------cccceEEEcCC-CCEEEEEecce-eEEeecCCCCceeEEecc-----CC------C-CCCc
Q 018705          190 -------------------YFANGIALSKN-EDFVVVCESWK-RYWLKGDRAGILDAFIEN-----LP------G-GPDN  236 (351)
Q Consensus       190 -------------------~~~ngi~~~~d-g~~lyv~~~~~-~~~i~~~~~~~~~~~~~~-----~~------g-~pd~  236 (351)
                                         .....|++++. .+.+|++...+ .+...+. ..+.+.+...     +|      + ....
T Consensus       158 ~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~  236 (394)
T 3b7f_A          158 DHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHC  236 (394)
T ss_dssp             TCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEE
T ss_pred             CCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeE
Confidence                               11236888873 34588876444 3333322 1223322211     11      0 1134


Q ss_pred             eEECCC--CCEEEEEe
Q 018705          237 INLAPD--GSFWIGLI  250 (351)
Q Consensus       237 i~~d~~--G~lwva~~  250 (351)
                      ++++++  +.+|++..
T Consensus       237 i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          237 VVQHPAAPDILYQQNH  252 (394)
T ss_dssp             EEECSSSTTEEEEEET
T ss_pred             EEECCCCCCEEEEEcC
Confidence            577765  77999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.36  E-value=0.00023  Score=64.42  Aligned_cols=144  Identities=13%  Similarity=0.049  Sum_probs=89.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-------eE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C--
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-------TL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E--  121 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-------~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~--  121 (351)
                      .-.+++++|++..+.++..|+.|..|+..++       +. ..+........ .++++++|+++++-...+.+++. .  
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            4568999987778889999999999987432       11 12222234456 89999999877765556666665 2  


Q ss_pred             CC--e---EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE---EEeecCccccc
Q 018705          122 EG--V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET---TVLHEGFYFAN  193 (351)
Q Consensus       122 ~g--~---~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---~~~~~~~~~~n  193 (351)
                      .+  .   ..+......+++++++|+|.+.++.+.                 ++.|..||..+++.   ..+........
T Consensus       139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~~v~  201 (330)
T 2hes_X          139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEGTVW  201 (330)
T ss_dssp             TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCCcEE
Confidence            22  2   233333367889999999988877654                 45677776544432   22222234456


Q ss_pred             eEEEcCC--CCEEEEEecce--eEE
Q 018705          194 GIALSKN--EDFVVVCESWK--RYW  214 (351)
Q Consensus       194 gi~~~~d--g~~lyv~~~~~--~~~  214 (351)
                      .++++++  +..|..+..++  ++|
T Consensus       202 ~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          202 SSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             EEEecCCCCeeEEEEEeCCCeEEEE
Confidence            7899998  55555555555  665

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.36  E-value=0.00012  Score=67.69  Aligned_cols=177  Identities=14%  Similarity=0.100  Sum_probs=113.4

Q ss_pred             CceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEe------ecCCccccceEEcC-CCCEEEEeCCCCeEEEc--C-C
Q 018705           54 PEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWK------HIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--E-E  122 (351)
Q Consensus        54 pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~------~~~~~p~~gl~~d~-~G~L~v~d~~~gl~~~~--~-~  122 (351)
                      ..++.+.|.+ ..++++..|+.|..||..+++.....      ....... .+++.+ +++++++....+.++++  . .
T Consensus       160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            4456666544 46888999999999998877653321      1112344 677765 77877776666766665  2 3


Q ss_pred             C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--------cccc
Q 018705          123 G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------FYFA  192 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------~~~~  192 (351)
                      +  ...+......+++++++|+|..+++.+.                 +|.|..||..+++.......        ....
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-----------------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEECS-----------------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEcC-----------------CCeEEEEECCCCcEEEEecccccccccccCce
Confidence            3  5555544467999999999988887765                 56789999887765433221        1235


Q ss_pred             ceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEe---ccCCCCCCceEECCCCCEEEEEe
Q 018705          193 NGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFI---ENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~---~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ..++++++|+.++.+..++  ++|-.  ..++. ..+.   ....+....++++++|.+.++..
T Consensus       302 ~~~~~s~~g~~l~~g~~dg~i~vwd~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYSNGDCYVWDT--LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             SEEEECSSSSEEEEECTTSCEEEEET--TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEEC--CCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            6899999999777776666  45521  12221 1111   12223446678999998777654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.35  E-value=8.6e-05  Score=67.06  Aligned_cols=181  Identities=13%  Similarity=0.033  Sum_probs=98.9

Q ss_pred             cCCCceEEEeeCCCeEEE-EEc---CCEEEEEEcCCCeEEEEe--ecCCccccceEEcCC---CCEEEEeCCCCeEEEc-
Q 018705           51 VNHPEDVSVVVSKGALYT-ATR---DGWVKYFILHNETLVNWK--HIDSQSLLGLTTTKD---GGVILCDNEKGLLKVT-  120 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv-~~~---~g~I~~~d~~~g~~~~~~--~~~~~p~~gl~~d~~---G~L~v~d~~~gl~~~~-  120 (351)
                      -....++++.|++..+.+ +..   +|.|..|+..+++.....  ....... .+++.++   |+++++....+.+++. 
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK-CGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE-EEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE-EEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            345678999976656554 444   899999998777654332  2234455 8899887   5544443344545554 


Q ss_pred             C-CC---eEEecCCCCCcccE------EEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeecC
Q 018705          121 E-EG---VEAIVPDASFTNDV------IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEG  188 (351)
Q Consensus       121 ~-~g---~~~l~~~~~~~n~l------~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~  188 (351)
                      . ++   ...+......++++      +++++|...++.+.                 +|.|..||..+++  ...+...
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----------------d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----------------DGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----------------TSCEEEECTTSCSSCSEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----------------CCeEEEEeCCCCCCcceecccc
Confidence            2 22   34444333455555      45678876666543                 4678888877654  2222111


Q ss_pred             c----cccceEE----EcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECC---CCCEEEEEe
Q 018705          189 F----YFANGIA----LSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAP---DGSFWIGLI  250 (351)
Q Consensus       189 ~----~~~ngi~----~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~---~G~lwva~~  250 (351)
                      .    .....++    ++++++.++.+..++.+.+-+...++..... ........+.+++   +|++.++..
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~  231 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-NIKNGVCSLEFDRKDISMNKLVATS  231 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-CCCCceEEEEcCCCCCCCCEEEEEC
Confidence            1    1233455    6789987777766553222222223322222 2233345678887   777555543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.34  E-value=0.00025  Score=66.42  Aligned_cols=143  Identities=10%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             CCceEEEeeCC--CeEEEEEcCCEEEEEEcCCCeEE----------------------------------------EE-e
Q 018705           53 HPEDVSVVVSK--GALYTATRDGWVKYFILHNETLV----------------------------------------NW-K   89 (351)
Q Consensus        53 ~pe~i~~d~~~--g~lyv~~~~g~I~~~d~~~g~~~----------------------------------------~~-~   89 (351)
                      ...++++.+++  ..+.++..||.|..|+..+++..                                        .+ .
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence            35689999766  57888999999999987543321                                        11 1


Q ss_pred             ecCCccccceEEcCCCCEEEEeCCCCeEEEcC-C--C--eEEe-------cCCCCCcccEEEccCC-cEEEEeCCCccCC
Q 018705           90 HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E--G--VEAI-------VPDASFTNDVIAASDG-TLYFTVASTKYTP  156 (351)
Q Consensus        90 ~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~--g--~~~l-------~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~  156 (351)
                      ....... .+++.++|+++++. ..+.+++.. .  +  ...+       ......+++++++|+| .++++.+.     
T Consensus       175 ~h~~~v~-~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----  247 (447)
T 3dw8_B          175 AHTYHIN-SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-----  247 (447)
T ss_dssp             CCSSCCC-EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-----
T ss_pred             CCCcceE-EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-----
Confidence            1223455 89999999887776 567666663 3  2  2222       1112568899999998 77776654     


Q ss_pred             cccccccccccCCceEEEEeCCCCeE-----EEeecCcc------------ccceEEEcCCCCEEEEEecce-eEE
Q 018705          157 TDFYKDMAEGKPYGQLRKYDPKLKET-----TVLHEGFY------------FANGIALSKNEDFVVVCESWK-RYW  214 (351)
Q Consensus       157 ~~~~~~~~~~~~~g~l~~~d~~~~~~-----~~~~~~~~------------~~ngi~~~~dg~~lyv~~~~~-~~~  214 (351)
                                  +|.|..||..+++.     ..+.....            ....++++|+++.|..+..+. ++|
T Consensus       248 ------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iw  311 (447)
T 3dw8_B          248 ------------KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVW  311 (447)
T ss_dssp             ------------TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred             ------------CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEE
Confidence                        46788888776653     33332221            567899999999777766633 555

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.34  E-value=0.00033  Score=63.45  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEee--cCCccccceEEcCCCCEEEEeCCCCeEEEc-CC-----
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-----  122 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~--~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~-----  122 (351)
                      -.++++++  +.+.++..|+.|..|+..++..+   .+..  ...... .+++.++|+++++....+.+++. ..     
T Consensus        17 v~~~~~s~--~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           17 IWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             EEEEEEET--TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             eeeeccCC--CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            34677773  38888999999999998665322   2211  223355 89999999877766566666665 21     


Q ss_pred             ---C--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CC---eE-EEeecCcccc
Q 018705          123 ---G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LK---ET-TVLHEGFYFA  192 (351)
Q Consensus       123 ---g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~---~~-~~~~~~~~~~  192 (351)
                         .  ...+......+++++++|+|...++.+.                 ++.|..||.. .+   +. ..+...-...
T Consensus        94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             -CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence               1  1223323367889999999987777654                 4678888763 22   22 2222333456


Q ss_pred             ceEEEcCCCCEEEEEecce--eEE
Q 018705          193 NGIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~--~~~  214 (351)
                      +.++++|+++.|..+..++  ++|
T Consensus       157 ~~v~~~p~~~~l~s~s~D~~i~iW  180 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDDTVRIW  180 (330)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEE
Confidence            7899999999666666665  666

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.33  E-value=9.6e-05  Score=74.89  Aligned_cols=249  Identities=11%  Similarity=0.016  Sum_probs=132.5

Q ss_pred             ceEEEeeCCCeEEEEEcC---------CEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-CC-
Q 018705           55 EDVSVVVSKGALYTATRD---------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-  123 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~---------g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-  123 (351)
                      .+++++|++..+..+..+         +.++.+|..+|+.+.+........ ..+++|||+..+......|+..+. +| 
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIEPNLP  143 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEEECCeEEEEECCCCc
Confidence            347889877777765543         667899998887765443334445 778889995333333456666664 55 


Q ss_pred             eEEecCCC-------------------CCcccEEEccCCc-EEEEe-CCCccCCccccc--------------cc---cc
Q 018705          124 VEAIVPDA-------------------SFTNDVIAASDGT-LYFTV-ASTKYTPTDFYK--------------DM---AE  165 (351)
Q Consensus       124 ~~~l~~~~-------------------~~~n~l~~d~dG~-ly~t~-~~~~~~~~~~~~--------------~~---~~  165 (351)
                      .+.+....                   .....++++|||. |.+.. ..+.  ...+..              .+   ..
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC--CceEEEEeecCCCCCCCcceeecCCCC
Confidence            55443211                   1123588999995 44432 1110  000000              00   11


Q ss_pred             ccC--CceEEEEeCCC---C---eEEEeec------CccccceEEEcCCCCEEEEE-ecce---eEEeecCCCCc-----
Q 018705          166 GKP--YGQLRKYDPKL---K---ETTVLHE------GFYFANGIALSKNEDFVVVC-ESWK---RYWLKGDRAGI-----  222 (351)
Q Consensus       166 ~~~--~g~l~~~d~~~---~---~~~~~~~------~~~~~ngi~~~~dg~~lyv~-~~~~---~~~i~~~~~~~-----  222 (351)
                      +..  ...|+.+|.++   +   +...+..      .......++++|||+.+++. ....   .+++-+...++     
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~  301 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC  301 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred             cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence            221  23689999987   6   4544432      22334568899999844333 2221   44443322222     


Q ss_pred             ---eeEEeccCCCC-----CCceEECCCCCEEE-EEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEE
Q 018705          223 ---LDAFIENLPGG-----PDNINLAPDGSFWI-GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVK  293 (351)
Q Consensus       223 ---~~~~~~~~~g~-----pd~i~~d~~G~lwv-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  293 (351)
                         .+++.+...+.     +....+.+||+.++ .....                                 .....|..
T Consensus       302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~---------------------------------~G~~~l~~  348 (740)
T 4a5s_A          302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE---------------------------------EGYRHICY  348 (740)
T ss_dssp             CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT---------------------------------TSCEEEEE
T ss_pred             eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC---------------------------------CCceEEEE
Confidence               12222222222     23678899997332 22211                                 12346888


Q ss_pred             EECCCCeEEEEEECCCCCcccceeEEE-EECCEEEEEecC------CCeEEEEeCCCC
Q 018705          294 VDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQ------SNFIGILPLDGP  344 (351)
Q Consensus       294 ~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~ig~~~------~~~i~~~~~~~~  344 (351)
                      +|. +|+....+..  |  .+.+..+. .+++.||+.+..      ...|+++++.+.
T Consensus       349 ~~~-~~~~~~~lT~--g--~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~  401 (740)
T 4a5s_A          349 FQI-DKKDCTFITK--G--TWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDY  401 (740)
T ss_dssp             EET-TCSSCEESCC--S--SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred             EEC-CCCceEeccc--C--CEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence            998 6655544442  2  12344433 457788887754      247888887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.32  E-value=9.8e-05  Score=66.81  Aligned_cols=98  Identities=10%  Similarity=0.023  Sum_probs=64.1

Q ss_pred             cCCCceEEEeeCC---CeEEEEEcCCEEEEEEcCC-CeE--EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CC
Q 018705           51 VNHPEDVSVVVSK---GALYTATRDGWVKYFILHN-ETL--VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~---g~lyv~~~~g~I~~~d~~~-g~~--~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~  122 (351)
                      -..-.+++++|++   ..++++..+|.|..|+..+ ++.  ..+........ .+++.++|+++++....+.+++.  .+
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            3455789999764   6778899999999999865 433  23333445566 89999999866655556666665  24


Q ss_pred             C-eEEecCCCCCcccEEE--ccCCcEEEEe
Q 018705          123 G-VEAIVPDASFTNDVIA--ASDGTLYFTV  149 (351)
Q Consensus       123 g-~~~l~~~~~~~n~l~~--d~dG~ly~t~  149 (351)
                      + ...+......+.++++  +++|.++++.
T Consensus       118 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  147 (368)
T 3mmy_A          118 NQAIQIAQHDAPVKTIHWIKAPNYSCVMTG  147 (368)
T ss_dssp             TEEEEEEECSSCEEEEEEEECSSCEEEEEE
T ss_pred             CCceeeccccCceEEEEEEeCCCCCEEEEc
Confidence            5 3333323356777777  7777644443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.28  E-value=7.5e-06  Score=79.88  Aligned_cols=183  Identities=10%  Similarity=0.056  Sum_probs=108.9

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEcCC--------------------------------------EEEEEEcCC--
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDG--------------------------------------WVKYFILHN--   82 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g--------------------------------------~I~~~d~~~--   82 (351)
                      +..|..+.  .|+.++++++++.+|+.+.+.                                      .|..+|..+  
T Consensus       188 ~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~  265 (595)
T 1fwx_A          188 AWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA  265 (595)
T ss_dssp             EEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG
T ss_pred             EEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC
Confidence            34555553  699999999888999977432                                      366777665  


Q ss_pred             CeE-EEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcCCC-e-----------EEecC-CC-CCcccEEEccCCcE
Q 018705           83 ETL-VNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTEEG-V-----------EAIVP-DA-SFTNDVIAASDGTL  145 (351)
Q Consensus        83 g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~~g-~-----------~~l~~-~~-~~~n~l~~d~dG~l  145 (351)
                      ++. ......+..|+ |+.+++||+ +|+++.... +..++-+. .           ..... .. ..|..+++++||++
T Consensus       266 ~~~~~~~Ipvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~a  344 (595)
T 1fwx_A          266 SSLFTRYIPIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNA  344 (595)
T ss_dssp             CCSSEEEEEEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEE
T ss_pred             CceeEEEEecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeE
Confidence            333 33334456899 999999996 777776544 44444221 1           01111 11 68999999999999


Q ss_pred             EEEeCCCccCCcccccccccccCCceEEEEeCCC----------CeE-EEeecC-----ccccceEEEcCCCCEEEEEec
Q 018705          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL----------KET-TVLHEG-----FYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       146 y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~----------~~~-~~~~~~-----~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      |++...                 ++.|.+||.++          .++ ..+.-+     ...+.|+++++||++||++.-
T Consensus       345 Y~t~~l-----------------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          345 YTSLFL-----------------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEETT-----------------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EEEEec-----------------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            988754                 34566665433          122 222111     223467889999999999875


Q ss_pred             ce--eE-----------EeecCCCCceeEEecc-CCCCCCceEECCCCCE
Q 018705          210 WK--RY-----------WLKGDRAGILDAFIEN-LPGGPDNINLAPDGSF  245 (351)
Q Consensus       210 ~~--~~-----------~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~l  245 (351)
                      ..  ||           .+-+-..++.++..+. ..+.|....+++...|
T Consensus       408 ~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          408 FSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSIL  457 (595)
T ss_dssp             CCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTTT
T ss_pred             CCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHHHc
Confidence            44  44           2221122233333221 1245777777766544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.27  E-value=0.00012  Score=73.45  Aligned_cols=193  Identities=10%  Similarity=0.024  Sum_probs=104.8

Q ss_pred             CceEEEeeCCCeEEEEEcC---------CEEEEEEcCCCeEEEEeecCC---ccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           54 PEDVSVVVSKGALYTATRD---------GWVKYFILHNETLVNWKHIDS---QSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~---------g~I~~~d~~~g~~~~~~~~~~---~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      ..+++++|++..+..+..+         +.|+.+|..+++.+.+.....   .+. .+++++||+.++......++.++.
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEEC
Confidence            6789999877777666542         788999998887655433222   255 788999995443333356777774


Q ss_pred             -CC-eEEecCC-CC------------------CcccEEEccCCc-EEEEeCCCccCCcccc------------ccc-c--
Q 018705          122 -EG-VEAIVPD-AS------------------FTNDVIAASDGT-LYFTVASTKYTPTDFY------------KDM-A--  164 (351)
Q Consensus       122 -~g-~~~l~~~-~~------------------~~n~l~~d~dG~-ly~t~~~~~~~~~~~~------------~~~-~--  164 (351)
                       +| ...+... ..                  ...+++++|||+ |.++.... -....+.            ..+ +  
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccCCC
Confidence             55 4443322 11                  236799999996 44433110 0000000            000 0  


Q ss_pred             cc--cCCceEEEEeCCCCeE-EEeecC------ccccceEEEcCCCCEEEEEecc-e---eEEeecCCCCceeEE-eccC
Q 018705          165 EG--KPYGQLRKYDPKLKET-TVLHEG------FYFANGIALSKNEDFVVVCESW-K---RYWLKGDRAGILDAF-IENL  230 (351)
Q Consensus       165 ~~--~~~g~l~~~d~~~~~~-~~~~~~------~~~~ngi~~~~dg~~lyv~~~~-~---~~~i~~~~~~~~~~~-~~~~  230 (351)
                      .+  .....|+.||..+++. ..+...      ......++++|||+.+++.... .   .+++-+...++.... ....
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  300 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence            01  1123689999887763 333321      1234568999999866444322 1   444444333443322 2212


Q ss_pred             CCC----CCceEECCCCC-EEEE
Q 018705          231 PGG----PDNINLAPDGS-FWIG  248 (351)
Q Consensus       231 ~g~----pd~i~~d~~G~-lwva  248 (351)
                      .+.    +..++++++|+ |++.
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CCEEeccCCCceEcCCCCeEEEE
Confidence            222    23678999997 4443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.25  E-value=0.0002  Score=65.81  Aligned_cols=145  Identities=10%  Similarity=-0.022  Sum_probs=88.8

Q ss_pred             CCCcCCCceEEEee-CCCeEEEEEcCCEEEEEEcCCCeEEEEe--------------ecCCccccceEEcC-CCCEEEEe
Q 018705           48 EGCVNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWK--------------HIDSQSLLGLTTTK-DGGVILCD  111 (351)
Q Consensus        48 ~~~~~~pe~i~~d~-~~g~lyv~~~~g~I~~~d~~~g~~~~~~--------------~~~~~p~~gl~~d~-~G~L~v~d  111 (351)
                      .+.-..-.+++++| ++..++++..+|.|..|+..+++.....              ....... .+++.+ +++++++.
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEE
Confidence            33334556899997 6778889999999999998765331111              1223455 899988 66565554


Q ss_pred             CCCCeEEEc-C-CC--eEEecCCCCCcccEEEccC---CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          112 NEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASD---GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       112 ~~~gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~d---G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      ...+.+++. . ++  ...+.. ...+..+.+.+.   +.+.++...                 +|.|..||..+++...
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAVGTR-----------------GPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEEEES-----------------SSSEEEEESSSSCCCE
T ss_pred             eCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEEEcC-----------------CCeEEEEeCCCcceee
Confidence            455656655 3 44  333322 245566676663   335544432                 4678899877665433


Q ss_pred             -eecCccccceEEEcCCCCE-EEEEecce
Q 018705          185 -LHEGFYFANGIALSKNEDF-VVVCESWK  211 (351)
Q Consensus       185 -~~~~~~~~ngi~~~~dg~~-lyv~~~~~  211 (351)
                       +.........++++|+++. ++.+..++
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg  209 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADS  209 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence             2223345678999999984 55565555

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.24  E-value=8.2e-05  Score=73.96  Aligned_cols=155  Identities=16%  Similarity=0.166  Sum_probs=97.0

Q ss_pred             CCceEEEeeCCCeEEEEEcC----------CEEEEEEcCC------CeEEEEe-ecCCccccceEEcCCCC-EEEEeCC-
Q 018705           53 HPEDVSVVVSKGALYTATRD----------GWVKYFILHN------ETLVNWK-HIDSQSLLGLTTTKDGG-VILCDNE-  113 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~----------g~I~~~d~~~------g~~~~~~-~~~~~p~~gl~~d~~G~-L~v~d~~-  113 (351)
                      ...+++|+|++..|+....+          ..|++++..+      ++.+.+. ....... .+++++||+ |+++... 
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT-GPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC-CCEECTTSSEEEEEEECT
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc-CceECCCCCEEEEEECCC
Confidence            34578999888777766544          5799999877      6666554 3334456 889999996 4444322 


Q ss_pred             -------CCeEEEc-C-CC----eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC
Q 018705          114 -------KGLLKVT-E-EG----VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       114 -------~gl~~~~-~-~g----~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                             ..++.++ . +|    .+.+... ...+..++++|||++|++....               ....|+++|.++
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~---------------~~~~l~~~~~~~  274 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT---------------GWWNLHRVDPAT  274 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT---------------SSCEEEEECTTT
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC---------------CCeEEEEEECCC
Confidence                   2466665 3 34    2223322 2567788999999988776431               123799999877


Q ss_pred             CeEEEeecCc-cc--------cceEEEcCCCCEEEEEecce--eEEeecCCCCcee
Q 018705          180 KETTVLHEGF-YF--------ANGIALSKNEDFVVVCESWK--RYWLKGDRAGILD  224 (351)
Q Consensus       180 ~~~~~~~~~~-~~--------~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~  224 (351)
                      ++.+.+...- ..        ...++++++++.++.+.. +  ++|..+...+..+
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~  329 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELV  329 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEE
T ss_pred             CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEE
Confidence            7776654321 11        346888899986666555 5  6665443333433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.21  E-value=0.004  Score=58.59  Aligned_cols=231  Identities=13%  Similarity=0.083  Sum_probs=122.5

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEc--CCCCEEEEeCCCCeEEEc--CCC--e
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTT--KDGGVILCDNEKGLLKVT--EEG--V  124 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d--~~G~L~v~d~~~gl~~~~--~~g--~  124 (351)
                      ....++++. .++.+.++..||.|..||..+++... +........ .+++.  +++.++++....+.+++.  +++  .
T Consensus       163 ~~V~~l~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          163 GGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             SCEEEEEEC-STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             cCEEEEEEc-CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            445678887 45688899999999999998886543 332334445 67776  566655544444555554  222  1


Q ss_pred             EEecCCC---------------------CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          125 EAIVPDA---------------------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       125 ~~l~~~~---------------------~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      .......                     ....-.+++++|.+.++.+                 .+|.|..||..+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-----------------~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS-----------------YDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE-----------------TTSCEEEEETTTTEEE
T ss_pred             ccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcEE
Confidence            1110000                     0111112344454444332                 2578999998877654


Q ss_pred             Eeec-CccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhh
Q 018705          184 VLHE-GFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAI  260 (351)
Q Consensus       184 ~~~~-~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~  260 (351)
                      .... .......++++++++.++.+..++  ++|  +...++..............+.++  +++.++...         
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---------  370 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIW--DLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA---------  370 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE--ETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET---------
T ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC---------
Confidence            4332 334567899999999787777666  444  222233211111222223445565  455444332         


Q ss_pred             hcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEe
Q 018705          261 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP  340 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~  340 (351)
                                                 .+.|..+|..+++....++....   .....+...+..|..|+  .+.|..++
T Consensus       371 ---------------------------dg~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~--dg~i~iwd  418 (464)
T 3v7d_B          371 ---------------------------DGSIRGWDANDYSRKFSYHHTNL---SAITTFYVSDNILVSGS--ENQFNIYN  418 (464)
T ss_dssp             ---------------------------TSEEEEEETTTCCEEEEEECTTC---CCEEEEEECSSEEEEEE--TTEEEEEE
T ss_pred             ---------------------------CCcEEEEECCCCceeeeecCCCC---ccEEEEEeCCCEEEEec--CCeEEEEE
Confidence                                       23566777755555555543221   11222223344444444  57788888


Q ss_pred             CCCCCC
Q 018705          341 LDGPEP  346 (351)
Q Consensus       341 ~~~~~~  346 (351)
                      +.+.++
T Consensus       419 ~~~g~~  424 (464)
T 3v7d_B          419 LRSGKL  424 (464)
T ss_dssp             TTTCCE
T ss_pred             CCCCcE
Confidence            776543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.20  E-value=0.004  Score=58.11  Aligned_cols=232  Identities=11%  Similarity=0.066  Sum_probs=132.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---cCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~  125 (351)
                      ....|+|+ .++.|-++. |+.|+.||..+|+......   ...... .+++.++|+++++....+.++++  .++  +.
T Consensus       107 y~~~l~wS-~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~-sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWS-SGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEEC-TTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEEC-CCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE-EEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            34568888 567777776 8899999998987754332   223356 89999999877665566666666  355  44


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeecCccccceEEEcCCCCE
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                      .+......+.  +++.++.+.++.+.                 ++.+..+|.....  +..+........++.++++++.
T Consensus       184 ~~~~h~~~v~--~~s~~~~~l~sgs~-----------------d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~  244 (420)
T 4gga_A          184 NMTSHSARVG--SLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH  244 (420)
T ss_dssp             EECCCSSCEE--EEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEeCCCCceE--EEeeCCCEEEEEeC-----------------CCceeEeeecccceeeEEecccccceeeeeecCCCCe
Confidence            4433323333  34455666655443                 4567777755432  2333344456678899999997


Q ss_pred             EEEEecce--eEEeecC-CCCc--eeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchh
Q 018705          204 VVVCESWK--RYWLKGD-RAGI--LDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  277 (351)
Q Consensus       204 lyv~~~~~--~~~i~~~-~~~~--~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (351)
                      +..+..++  ++|-... ....  ..... ...+....+++.+.+. +.+....                          
T Consensus       245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~g--------------------------  297 (420)
T 4gga_A          245 LASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGG--------------------------  297 (420)
T ss_dssp             EEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEEC--------------------------
T ss_pred             eeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEee--------------------------
Confidence            76666665  4543211 1111  11111 1122223456666553 4333221                          


Q ss_pred             hcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEE--ECCEEEEEec-CCCeEEEEeCCCCCC
Q 018705          278 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASL-QSNFIGILPLDGPEP  346 (351)
Q Consensus       278 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~ig~~-~~~~i~~~~~~~~~~  346 (351)
                              ...+.|..+|..+|+....+....     .+.++..  .++.|..++. ..+.|..+++++-++
T Consensus       298 --------s~D~~I~iwd~~t~~~~~~~~~~~-----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          298 --------TSDRHIRIWNVCSGACLSAVDAHS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             --------TTTCEEEEEETTTTEEEEEEECSS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             --------cCCCEEEEEeCCccccceeecccc-----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence                    223456667876777777665432     2444443  3456766653 346688888766543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.20  E-value=0.00012  Score=77.24  Aligned_cols=147  Identities=10%  Similarity=0.095  Sum_probs=94.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEE-EEEcCCCeEEEEeecCCccccceEEcCCCCEE-EEeCCCCeEEEcC-CC-eEEec-
Q 018705           54 PEDVSVVVSKGALYTATRDGWVK-YFILHNETLVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVTE-EG-VEAIV-  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~-~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~-v~d~~~gl~~~~~-~g-~~~l~-  128 (351)
                      ..+++|. ++..++....+++++ .++..+++.+.+......+. .++++++|+.+ ++.....++.++. +| ...+. 
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            3456666 555666656677899 89987777665553335567 89999999754 4554445666664 66 44443 


Q ss_pred             CCCCCcccEEEccCCcEE-EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEE
Q 018705          129 PDASFTNDVIAASDGTLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       129 ~~~~~~n~l~~d~dG~ly-~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      .....+.+++++|||+.. ++.....+..        .....+.|+.||.++++...+.........++++|||+.||+.
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~--------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGET--------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTT--------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccc--------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEE
Confidence            333556889999999743 3322100000        0011347999999888866665555566779999999988887


Q ss_pred             ecc
Q 018705          208 ESW  210 (351)
Q Consensus       208 ~~~  210 (351)
                      ...
T Consensus       490 s~~  492 (1045)
T 1k32_A          490 SYR  492 (1045)
T ss_dssp             ESC
T ss_pred             ecc
Confidence            653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.20  E-value=0.00015  Score=76.49  Aligned_cols=173  Identities=9%  Similarity=0.024  Sum_probs=106.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-----------CCccccceEEc-CCCC-EEEEeCCCCeEEEcC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----------DSQSLLGLTTT-KDGG-VILCDNEKGLLKVTE  121 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-----------~~~p~~gl~~d-~~G~-L~v~d~~~gl~~~~~  121 (351)
                      ..++++|++..+..+ .++.|+.++...+++..+...           ...+. .++++ ++|+ |.++. ...++.++.
T Consensus       248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~-~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          248 YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF-AEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG-EEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             ceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccc-eeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            466888766655554 578899998755555433221           12356 89999 9996 44444 445666664


Q ss_pred             -CC-eEEecCCCC-CcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEE-EEeCCCCeEEEeecCccccceEE
Q 018705          122 -EG-VEAIVPDAS-FTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHEGFYFANGIA  196 (351)
Q Consensus       122 -~g-~~~l~~~~~-~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~~~~~~~~~~~~~~~ngi~  196 (351)
                       ++ ...+..... .+.+++++ ||. +++...                  .+.++ .++..+++.+.+.........++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------------------~~~l~~~~d~~~~~~~~l~~~~~~~~~~~  385 (1045)
T 1k32_A          325 SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------------------EGDFLGIYDYRTGKAEKFEENLGNVFAMG  385 (1045)
T ss_dssp             TSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------------------TEEEEEEEETTTCCEEECCCCCCSEEEEE
T ss_pred             CCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------------------CCceEEEEECCCCCceEecCCccceeeeE
Confidence             45 444433323 56677888 874 443322                  24788 89988777766553335567899


Q ss_pred             EcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          197 LSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       197 ~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ++|||+.|+++...+.+++-+...++.........+....++++++|+..+..
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~  438 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  438 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence            99999988877766544333333444443432333444678999999855443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00063  Score=61.74  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=104.4

Q ss_pred             CCceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEcCC--CCEEEEeCCCCeEEEc--CCC
Q 018705           53 HPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT--EEG  123 (351)
Q Consensus        53 ~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~--~~g  123 (351)
                      ...++++.+.  +..++++..||.|..||..+++...   +........ .+++.++  |+++++....+.+++.  .++
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            3457888755  6788899999999999987776322   222334456 8999988  8766655555555554  222


Q ss_pred             ----eEEecCCCCCcccEEEcc-------------CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EE-
Q 018705          124 ----VEAIVPDASFTNDVIAAS-------------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TT-  183 (351)
Q Consensus       124 ----~~~l~~~~~~~n~l~~d~-------------dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~-  183 (351)
                          ...+......+..+++++             ++.+.++.+.                 +|.|..||..+++  .. 
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-----------------TSCEEEEEEETTTTEEEE
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----------------CCeEEEEEecCCCcceee
Confidence                222222235678888888             5766665543                 4567777754332  11 


Q ss_pred             --EeecCccccceEEEcCC---CCEEEEEecce--eEEeecCCCC--ceeEEec-cCCCCCCceEECCCCCEEEEEe
Q 018705          184 --VLHEGFYFANGIALSKN---EDFVVVCESWK--RYWLKGDRAG--ILDAFIE-NLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       184 --~~~~~~~~~ngi~~~~d---g~~lyv~~~~~--~~~i~~~~~~--~~~~~~~-~~~g~pd~i~~d~~G~lwva~~  250 (351)
                        .+.........++++|+   ++.++.+..++  ++|-......  ....+.. ...+....++++++|++.++..
T Consensus       199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence              11222345678999999   77666666665  5553221111  1111111 1222234568889997555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.17  E-value=5.9e-05  Score=75.87  Aligned_cols=190  Identities=9%  Similarity=0.029  Sum_probs=100.7

Q ss_pred             CceEEEeeCCCeEEEEEc---------CCEEEEEEcCCCeE---EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           54 PEDVSVVVSKGALYTATR---------DGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~---------~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      ..+++++|++..+..+..         ++.|+.+|.++++.   +.+   ..... .+++++||+.++....+.++..+.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            568999987777766544         57899999988876   333   23455 889999996443333445666664


Q ss_pred             -CC-eEEecCCC-------------------CCcccEEEccCCc-EEEEeC-CCccC---C-----ccc--ccc---ccc
Q 018705          122 -EG-VEAIVPDA-------------------SFTNDVIAASDGT-LYFTVA-STKYT---P-----TDF--YKD---MAE  165 (351)
Q Consensus       122 -~g-~~~l~~~~-------------------~~~n~l~~d~dG~-ly~t~~-~~~~~---~-----~~~--~~~---~~~  165 (351)
                       +| ...+....                   ....+++++|||+ |.++.. .....   .     ...  ...   -..
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence             55 44443211                   1125899999995 444321 11000   0     000  000   000


Q ss_pred             cc--CCceEEEEeCCCCeEE---Eee------cCccccceEEEcCCCCEEEEEecc-e---eEEeec----CCCCceeEE
Q 018705          166 GK--PYGQLRKYDPKLKETT---VLH------EGFYFANGIALSKNEDFVVVCESW-K---RYWLKG----DRAGILDAF  226 (351)
Q Consensus       166 ~~--~~g~l~~~d~~~~~~~---~~~------~~~~~~ngi~~~~dg~~lyv~~~~-~---~~~i~~----~~~~~~~~~  226 (351)
                      +.  ....|+.+|.++++..   .+.      ........++++||++.++..... .   ++++-+    ...++....
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~  297 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT  297 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence            11  2236888998876531   211      112234678999998644442211 1   455544    333332222


Q ss_pred             e----ccCCCCCC-----ceEECCCCC-EEE
Q 018705          227 I----ENLPGGPD-----NINLAPDGS-FWI  247 (351)
Q Consensus       227 ~----~~~~g~pd-----~i~~d~~G~-lwv  247 (351)
                      .    ....+..+     .+.++++|+ +++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             GEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             EecccccCCceEccccCCccEECCCCCeEEE
Confidence            2    12223333     678999997 444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.17  E-value=0.0029  Score=56.13  Aligned_cols=179  Identities=13%  Similarity=0.126  Sum_probs=103.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe---EEEEeecCCccccceEEcC--CCCEEEEeCCCCeEEEcC--CC--
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET---LVNWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVTE--EG--  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~---~~~~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~~--~g--  123 (351)
                      .-.++++++++..|.++..|+.|..|+..++.   ...+........ .+++.+  +|+++++....+.++++.  ++  
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence            34588999877888999999999999975432   233333334456 888864  477777666667777762  33  


Q ss_pred             --eEEecCCCCCcccEEEccC--CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe---EEEeecCccccceEE
Q 018705          124 --VEAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFANGIA  196 (351)
Q Consensus       124 --~~~l~~~~~~~n~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~ngi~  196 (351)
                        ...+......++++++.|+  |.+.++.+.                 ++.|..||..++.   ...+.......+.++
T Consensus        90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred             EEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEecCCCceeeeeeecccCccceEe
Confidence              2233323356889999987  766666543                 4677777765432   122222233456788


Q ss_pred             EcCC-------------CCEEEEEecce--eEEeecCCCCceeEE--eccCCCCCCceEECCCC---CEEEEE
Q 018705          197 LSKN-------------EDFVVVCESWK--RYWLKGDRAGILDAF--IENLPGGPDNINLAPDG---SFWIGL  249 (351)
Q Consensus       197 ~~~d-------------g~~lyv~~~~~--~~~i~~~~~~~~~~~--~~~~~g~pd~i~~d~~G---~lwva~  249 (351)
                      ++|+             ++.|..+..++  ++|-...........  .....+....+++++++   ++.++.
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            8886             35565566555  666321111111111  11222233557888875   444444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.17  E-value=0.00026  Score=65.66  Aligned_cols=182  Identities=9%  Similarity=0.064  Sum_probs=112.2

Q ss_pred             CcCCCceEEEeeCCCeEEEEEc----------------CCEEEEEEcCCC--eE-EEEeec------CCccccceEEc-C
Q 018705           50 CVNHPEDVSVVVSKGALYTATR----------------DGWVKYFILHNE--TL-VNWKHI------DSQSLLGLTTT-K  103 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~----------------~g~I~~~d~~~g--~~-~~~~~~------~~~p~~gl~~d-~  103 (351)
                      .+...-++.+| ..++|||-..                .-+|+.+|.+++  ++ +++..+      ..... .+++| .
T Consensus        85 ~lvsV~~v~iD-~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~  162 (381)
T 3q6k_A           85 ELTSIYQPVID-DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVA  162 (381)
T ss_dssp             SSSCEEEEEEC-TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEES
T ss_pred             ceEEeeEEEEc-CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEecc
Confidence            36778899999 6899998321                126999999888  65 344322      12345 78888 2


Q ss_pred             -------CCCEEEEeCC-CCeEEEc-CCC--eEEec-----CCC-------------CCcccEEEccC----C-cEEEEe
Q 018705          104 -------DGGVILCDNE-KGLLKVT-EEG--VEAIV-----PDA-------------SFTNDVIAASD----G-TLYFTV  149 (351)
Q Consensus       104 -------~G~L~v~d~~-~gl~~~~-~~g--~~~l~-----~~~-------------~~~n~l~~d~d----G-~ly~t~  149 (351)
                             ++.+||+|.. .+|+.++ .+|  .+++.     +..             ..+++|+++++    + .+||+.
T Consensus       163 ~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          163 NPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             CTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             cCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence                   3568999965 4788888 455  44432     100             36788899886    4 689987


Q ss_pred             CCCccCCcccccccccccCCceEEEEe------CC-CCeEEEeecCccccc--eEEEc-CCCCEEEEEecce-e--EEee
Q 018705          150 ASTKYTPTDFYKDMAEGKPYGQLRKYD------PK-LKETTVLHEGFYFAN--GIALS-KNEDFVVVCESWK-R--YWLK  216 (351)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~~~d------~~-~~~~~~~~~~~~~~n--gi~~~-~dg~~lyv~~~~~-~--~~i~  216 (351)
                      .++.                 .+|++.      +. ...++.+.+......  +++++ .+| .||+++... .  .|-.
T Consensus       243 lss~-----------------~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~  304 (381)
T 3q6k_A          243 GSAI-----------------KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNT  304 (381)
T ss_dssp             SSCS-----------------EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEET
T ss_pred             CCCC-----------------cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeC
Confidence            6521                 344442      11 234444444332344  45665 566 599999876 2  3322


Q ss_pred             cC-C--CCceeEEec-cCCCCCCceEECCCCCEEEEEec
Q 018705          217 GD-R--AGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       217 ~~-~--~~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      .. .  .++.+++.. ..-.+|+++.+|.+|.||+....
T Consensus       305 ~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          305 QKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             TSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            11 1  133444433 32347999999999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.17  E-value=0.0036  Score=58.71  Aligned_cols=134  Identities=14%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             cCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEECCC
Q 018705          167 KPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPD  242 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~  242 (351)
                      ..+|.|..||..+++....... ......+++  +++.++.+..++  ++|  +...++. ..+. ........+..  +
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~-~~~~~v~~~~~--~  328 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW--DVETGNCIHTLT-GHQSLTSGMEL--K  328 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE--ETTTCCEEEEEC-CCCSCEEEEEE--E
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE--ECCCCCEEEEEc-CCcccEEEEEE--e
Confidence            3457788888776654433322 223445555  677677776666  444  2222221 2221 11112223334  4


Q ss_pred             CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE
Q 018705          243 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF  322 (351)
Q Consensus       243 G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~  322 (351)
                      |++.++...                                    .+.|..+|..+++.+..+..+.. ....++++..+
T Consensus       329 ~~~l~~~~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~  371 (445)
T 2ovr_B          329 DNILVSGNA------------------------------------DSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFN  371 (445)
T ss_dssp             TTEEEEEET------------------------------------TSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEEC
T ss_pred             CCEEEEEeC------------------------------------CCeEEEEECCCCcEEEEEccCCC-CCCCEEEEEEC
Confidence            555554332                                    23477778767888888865332 23456777666


Q ss_pred             CCEEEEEecCCCeEEEEeCCCCC
Q 018705          323 DGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       323 ~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      +..|..|+. .+.|..+++.+.+
T Consensus       372 ~~~l~s~~~-dg~v~iwd~~~~~  393 (445)
T 2ovr_B          372 KNFVITSSD-DGTVKLWDLKTGE  393 (445)
T ss_dssp             SSEEEEEET-TSEEEEEETTTCC
T ss_pred             CCEEEEEeC-CCeEEEEECCCCc
Confidence            666666664 6778888877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.15  E-value=0.003  Score=59.26  Aligned_cols=217  Identities=11%  Similarity=0.073  Sum_probs=122.9

Q ss_pred             EeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCC
Q 018705           59 VVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASF  133 (351)
Q Consensus        59 ~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~  133 (351)
                      +.++++.++++..+|.|..||..+++... +........ .++++  ++++++....+.+++.  .++  ...+......
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~  201 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-SSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST  201 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-EEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE-EEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence            33347889999999999999987776543 322333344 77776  4444444444555555  355  4444433345


Q ss_pred             cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce-
Q 018705          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK-  211 (351)
Q Consensus       134 ~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~-  211 (351)
                      +.++.++  +...++.+.                 +|.|..||..+++..... ........+++  +++.++.+..++ 
T Consensus       202 v~~~~~~--~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~  260 (445)
T 2ovr_B          202 VRCMHLH--EKRVVSGSR-----------------DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM  260 (445)
T ss_dssp             EEEEEEE--TTEEEEEET-----------------TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred             EEEEEec--CCEEEEEeC-----------------CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence            6666664  334444332                 568999998776654332 22334456666  566677776666 


Q ss_pred             -eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCce
Q 018705          212 -RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA  289 (351)
Q Consensus       212 -~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
                       ++|-.  ..++. ..+. ...+....+.+  +|+..++...                                    .+
T Consensus       261 i~iwd~--~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~------------------------------------d~  299 (445)
T 2ovr_B          261 VKVWDP--ETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSL------------------------------------DT  299 (445)
T ss_dssp             EEEEEG--GGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEET------------------------------------TS
T ss_pred             EEEEEC--CCCcEeEEec-CCCCceEEEEE--CCCEEEEEeC------------------------------------CC
Confidence             44421  11221 1111 11122233455  5654444332                                    13


Q ss_pred             EEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          290 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       290 ~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      .+..+|..+++.+..+..+..    .+.++...++.|..|+. .+.|..+++++..
T Consensus       300 ~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~~-dg~i~vwd~~~~~  350 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNA-DSTVKIWDIKTGQ  350 (445)
T ss_dssp             CEEEEETTTCCEEEEECCCCS----CEEEEEEETTEEEEEET-TSCEEEEETTTCC
T ss_pred             eEEEEECCCCCEEEEEcCCcc----cEEEEEEeCCEEEEEeC-CCeEEEEECCCCc
Confidence            477778767787777754432    35566667777777765 6678888876544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.12  E-value=2.1e-05  Score=66.89  Aligned_cols=107  Identities=13%  Similarity=0.014  Sum_probs=74.9

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-------EEeecCCccccceEEcCCCCEEEEeC
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-------NWKHIDSQSLLGLTTTKDGGVILCDN  112 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-------~~~~~~~~p~~gl~~d~~G~L~v~d~  112 (351)
                      +..+.++..+....-.+++++| +|.||.. .+|.++++++.+++.+       .+...+..-...+.+|++|.||++..
T Consensus        29 ~~~a~~iG~~gw~~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~d  106 (236)
T 1tl2_A           29 LARATLIGKGGWSNFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK  106 (236)
T ss_dssp             HHHSEEEESSSCTTCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET
T ss_pred             hhhccccCccccccceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCC
Confidence            3567888886678889999997 8889988 8899999998663322       22211111122789999999999954


Q ss_pred             CCCeEEEcC--CC-e------EEecCC-CCCcccEEEccCCcEEEEe
Q 018705          113 EKGLLKVTE--EG-V------EAIVPD-ASFTNDVIAASDGTLYFTV  149 (351)
Q Consensus       113 ~~gl~~~~~--~g-~------~~l~~~-~~~~n~l~~d~dG~ly~t~  149 (351)
                       ..++|+++  ++ -      ..+... -.....|.++|+|.||..+
T Consensus       107 -G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          107 -DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             -TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             -CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence             67889984  33 2      222221 1455789999999999877

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.0006  Score=61.89  Aligned_cols=142  Identities=9%  Similarity=0.043  Sum_probs=93.3

Q ss_pred             CceEEEee--CCCeEEEEEcCCEEEEEEcCCCeEEEEe-ec-CCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e-
Q 018705           54 PEDVSVVV--SKGALYTATRDGWVKYFILHNETLVNWK-HI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V-  124 (351)
Q Consensus        54 pe~i~~d~--~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~-  124 (351)
                      ..+++++|  .+..+.++..||.|..||..+++..... .. ..... .++++++|.++++....+.+++.  .++  . 
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~  206 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQAS  206 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC-EEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence            46788887  6677888999999999999887764332 22 22355 89999999988875566666665  355  3 


Q ss_pred             EEecC-CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc----ccc--ceEEE
Q 018705          125 EAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF----YFA--NGIAL  197 (351)
Q Consensus       125 ~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~----~~~--ngi~~  197 (351)
                      ..+.. ....+++++++|+|...++.+.                  +.|..||..+++.......+    ...  ..+++
T Consensus       207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~~------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          207 SRFPVDEEAKIKEVKFADNGYWMVVECD------------------QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             EECCCCTTSCEEEEEECTTSSEEEEEES------------------SBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             cEEeccCCCCEEEEEEeCCCCEEEEEeC------------------CeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence            55554 3467899999999987666543                  36888887654321111110    111  34999


Q ss_pred             cCCCCEEEEEec-ce--eEE
Q 018705          198 SKNEDFVVVCES-WK--RYW  214 (351)
Q Consensus       198 ~~dg~~lyv~~~-~~--~~~  214 (351)
                      +|+|++|..+.. ++  ++|
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEecCCCCcEEEE
Confidence            999997776554 33  555

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00024  Score=73.74  Aligned_cols=179  Identities=13%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      ....+++++|++..|.++..||.|..|+..+++............ .++|.+ |++.++-...+.++++  .++  ...+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            456799999888889999999999999986655433222223455 899999 8744444445666666  245  4444


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee------------cCccccceE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH------------EGFYFANGI  195 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~------------~~~~~~ngi  195 (351)
                      ... ..+..++++|+|...++.+.                 +|.|..||..+++...+.            ........|
T Consensus        96 ~~~-~~V~~v~~sp~g~~l~sgs~-----------------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl  157 (902)
T 2oaj_A           96 FVP-GKITSIDTDASLDWMLIGLQ-----------------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI  157 (902)
T ss_dssp             ECS-SCEEEEECCTTCSEEEEEET-----------------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred             cCC-CCEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence            322 56888999999976555433                 467999998877653211            112346789


Q ss_pred             EEcCCC-CEEEEEecceeEEeecCCCCce-eEEeccC-----------------CCCCCceEECCCCCEEEEEec
Q 018705          196 ALSKNE-DFVVVCESWKRYWLKGDRAGIL-DAFIENL-----------------PGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       196 ~~~~dg-~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~-----------------~g~pd~i~~d~~G~lwva~~~  251 (351)
                      +++|++ ..+.++..++.+ +-+...++. ..+....                 .+....+++.++|++.++...
T Consensus       158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence            999964 455555555533 333222221 2221110                 012345678899987776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.10  E-value=0.00072  Score=60.86  Aligned_cols=213  Identities=10%  Similarity=0.159  Sum_probs=115.7

Q ss_pred             CCCeEEEEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCC--------------CCeEEEcCCC--
Q 018705           62 SKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE--------------KGLLKVTEEG--  123 (351)
Q Consensus        62 ~~g~lyv~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~--------------~gl~~~~~~g--  123 (351)
                      +++.+|....  +++|++++.+....+.+...  .+. -|..+ .+.||.+...              ..|++++.+|  
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~   99 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG   99 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence            4788888753  67899999855455544332  223 44433 2346555432              3578888766  


Q ss_pred             eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCC
Q 018705          124 VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~  202 (351)
                      .+.+....    +.+++++| .||+++...              .....|++.+.++.+.+.+.....    .+++++++
T Consensus       100 ~~~l~~~~----~~~~s~~g~~Iy~~~~~~--------------~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~  157 (302)
T 3s25_A          100 STVLDPDP----CIYASLIGNYIYYLHYDT--------------QTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDR  157 (302)
T ss_dssp             CEEEECSC----EEEEEEETTEEEEEEESS--------------SSCEEEEEEETTSCCCEEEESSCC----CCSEEETT
T ss_pred             ceEeecCC----ccEEEEeCCEEEEEeecC--------------CCCceEEEEECCCCCeEEEeCCCc----eEeeEECC
Confidence            55554432    22455555 799987210              013479999988666666655432    45788999


Q ss_pred             EEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcc
Q 018705          203 FVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  280 (351)
Q Consensus       203 ~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
                      .||+++.+. .+.......+..+.+..+    +....++++| .||.+....                            
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~----------------------------  205 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNR----------------------------  205 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGG----------------------------
T ss_pred             EEEEEeCCCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCC----------------------------
Confidence            999998744 333322222233333321    2233444444 444443210                            


Q ss_pred             cCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEe-cCCCeEEEEeCCCCCC
Q 018705          281 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS-LQSNFIGILPLDGPEP  346 (351)
Q Consensus       281 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~-~~~~~i~~~~~~~~~~  346 (351)
                             ...|.+.+. +|.....+.+  ..    +..+...+++||..+ ...+.|.++++.+...
T Consensus       206 -------~~~I~~~~l-dG~~~~~Lt~--~~----~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r  258 (302)
T 3s25_A          206 -------DNAIVHVNI-NNPNPVVLTE--AN----IEHYNVYGSLIFYQRGGDNPALCVVKNDGTGF  258 (302)
T ss_dssp             -------TTEEEEECS-SSCCCEECSC--SC----EEEEEEETTEEEEEECSSSCEEEEEETTSCCC
T ss_pred             -------CcEEEEEEC-CCCCeEEEeC--CC----cceEEECCCEEEEEECCCCcEEEEEECCCCcc
Confidence                   024677777 6654444432  11    123445677777753 2346777777777653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00038  Score=70.73  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             CCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCC--CCEEEEeCCCCeEEEcC--
Q 018705           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVTE--  121 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~~--  121 (351)
                      +.-..-.++++++++..+.++..+|.|..|+..++..+   .+........ .+++.++  |+++++....|.+++..  
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            33334567889877788899999999999987544332   2222334455 8899876  87766655566666652  


Q ss_pred             CC-eEE---ecCCCCCcccEEEccC--CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe---EEEeecCcccc
Q 018705          122 EG-VEA---IVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFA  192 (351)
Q Consensus       122 ~g-~~~---l~~~~~~~n~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~  192 (351)
                      ++ ...   +......+.+++++|+  |.++++.+.                 +|.|..||..++.   ...+.......
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEeecCCCcceeEeecCCCce
Confidence            44 222   2222367889999998  877766544                 4678888876552   22222333456


Q ss_pred             ceEEEcC-------------CCCEEEEEecce--eEE-eecCCCCceeEE--eccCCCCCCceEECCC---CCEEEEEe
Q 018705          193 NGIALSK-------------NEDFVVVCESWK--RYW-LKGDRAGILDAF--IENLPGGPDNINLAPD---GSFWIGLI  250 (351)
Q Consensus       193 ngi~~~~-------------dg~~lyv~~~~~--~~~-i~~~~~~~~~~~--~~~~~g~pd~i~~d~~---G~lwva~~  250 (351)
                      ..++++|             +++.++.+..++  ++| +.... ......  .....+....++++++   |++.++..
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            7788888             477677766666  544 22211 111111  1122233456788888   77666554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.09  E-value=0.00022  Score=65.57  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=97.8

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-C-ccccc------------------eEEcCCCCE-EEE----
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-S-QSLLG------------------LTTTKDGGV-ILC----  110 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~-~p~~g------------------l~~d~~G~L-~v~----  110 (351)
                      +++|+|++..|+....++.|+.++..+++.+.+.... . .|. |                  ..+.++|+. .++    
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGY-GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE-EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCC-CCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            3788987778877777778999999877765443311 1 111 1                  122344431 111    


Q ss_pred             -eCCCCeEEEcC-CC-eEEecCCCCCcccEEEcc-CCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe
Q 018705          111 -DNEKGLLKVTE-EG-VEAIVPDASFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (351)
Q Consensus       111 -d~~~gl~~~~~-~g-~~~l~~~~~~~n~l~~d~-dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  185 (351)
                       .....++.++. +| .+.+......+..++++| ||. |++.... ...           .....|+.+|.++++.+.+
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~-----------~~~~~l~~~d~~~~~~~~l  231 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHD-----------LVDARMWLVNEDGSNVRKI  231 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECS-CSS-----------SCSCCCEEEETTSCCCEES
T ss_pred             CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecC-CCC-----------CCCceEEEEECCCCceeEe
Confidence             12234666663 45 444433324567788999 674 6554322 000           0124699999877665555


Q ss_pred             ecC--ccccceEEEcCCCCEEEEEecc-e--e--EEeecCCCCceeEEeccCCCCCCceEECC-CCCEEEEE
Q 018705          186 HEG--FYFANGIALSKNEDFVVVCESW-K--R--YWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGL  249 (351)
Q Consensus       186 ~~~--~~~~ngi~~~~dg~~lyv~~~~-~--~--~~i~~~~~~~~~~~~~~~~g~pd~i~~d~-~G~lwva~  249 (351)
                      ...  ...+..++++|||+.|++.... .  .  +++-+...++.+.+. ..++.  ...+++ +|++++..
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~--~~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPPC--SHLMSNFDGSLMVGD  300 (396)
T ss_dssp             SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCSE--EEEEECSSSSEEEEE
T ss_pred             eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCCC--CCCccCCCCceEEEe
Confidence            442  2245668999999966665332 1  2  555444344443333 22322  267788 89866654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.07  E-value=0.0026  Score=59.68  Aligned_cols=216  Identities=11%  Similarity=0.117  Sum_probs=120.2

Q ss_pred             EEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCC
Q 018705           58 SVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDAS  132 (351)
Q Consensus        58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~  132 (351)
                      ++..+++.+.++..+|.|..||..+++.... ........ .+++  +++++++....|.+++.  .++  ...+.....
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~  214 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE  214 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC
Confidence            3444577889999999999999877765433 22233344 6666  56655554455555555  355  444543334


Q ss_pred             CcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE----EeecCccccceEEEcCCCCEEEEEe
Q 018705          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT----VLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       133 ~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~----~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      .+.+++++  +...++.+.                 +|.|..||..+++..    .........+.+++  +++.++.+.
T Consensus       215 ~v~~l~~~--~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          215 AVLHLRFN--NGMMVTCSK-----------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             CEEEEECC--TTEEEEEET-----------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             cEEEEEEc--CCEEEEeeC-----------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence            56666664  334444432                 467888887655421    22222233455666  667677777


Q ss_pred             cce--eEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCC
Q 018705          209 SWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  285 (351)
Q Consensus       209 ~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
                      .++  ++|  +...++. ..+. ...+....+.+  +|++.++...                                  
T Consensus       274 ~dg~i~vw--d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~----------------------------------  314 (435)
T 1p22_A          274 GDRTIKVW--NTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSS----------------------------------  314 (435)
T ss_dssp             TTSEEEEE--ETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEET----------------------------------
T ss_pred             CCCeEEEE--ECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeC----------------------------------
Confidence            666  444  2222222 2222 11111223344  3555554332                                  


Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                        .+.|..+|..+++.+..+..+.+    .++++..++..|..|+. .+.|..+++..
T Consensus       315 --dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~l~sg~~-dg~i~vwd~~~  365 (435)
T 1p22_A          315 --DNTIRLWDIECGACLRVLEGHEE----LVRCIRFDNKRIVSGAY-DGKIKVWDLVA  365 (435)
T ss_dssp             --TSCEEEEETTTCCEEEEECCCSS----CEEEEECCSSEEEEEET-TSCEEEEEHHH
T ss_pred             --CCeEEEEECCCCCEEEEEeCCcC----cEEEEEecCCEEEEEeC-CCcEEEEECCC
Confidence              23477788756888877765432    46666666666777765 66788888643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.06  E-value=0.00033  Score=64.32  Aligned_cols=191  Identities=17%  Similarity=0.172  Sum_probs=97.9

Q ss_pred             CceEEEeeCCCeEE-EEEc--CCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC-eEEe
Q 018705           54 PEDVSVVVSKGALY-TATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAI  127 (351)
Q Consensus        54 pe~i~~d~~~g~ly-v~~~--~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g-~~~l  127 (351)
                      ..+++++|++..++ +...  +..|+.++..+++.+.+.........++.+.++|+ |+.+.....++.++. ++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            56778887777654 4433  24799999888877665443333331478899996 545554445787775 45 4443


Q ss_pred             cCCCCCcccEEEccCCc-EEEEeCC---------CccCCcccccccc---cccCCceEEEEeCCCCeEEEeecCccccce
Q 018705          128 VPDASFTNDVIAASDGT-LYFTVAS---------TKYTPTDFYKDMA---EGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~-ly~t~~~---------~~~~~~~~~~~~~---~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng  194 (351)
                      ...   +.+  ..++|. |.++...         ..+.......-+.   .......|+.+|.++++.+.+.........
T Consensus       118 ~~~---~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~  192 (396)
T 3c5m_A          118 YTV---DEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGH  192 (396)
T ss_dssp             EEC---CTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEE
T ss_pred             Eec---ccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccccc
Confidence            321   111  223332 2211100         0000000000000   012345799999988887766654445667


Q ss_pred             EEEcC-CCCEEEEEecc------eeEEeecCCCCceeEEeccCCC-CCCceEECCCCC-EEEEE
Q 018705          195 IALSK-NEDFVVVCESW------KRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS-FWIGL  249 (351)
Q Consensus       195 i~~~~-dg~~lyv~~~~------~~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d~~G~-lwva~  249 (351)
                      ++++| |++.+++....      .++++-+...+....+....++ .+..+.++++|+ |+.+.
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVS  256 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEe
Confidence            89999 77756554322      1344433222232222211111 123458899997 44443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.06  E-value=0.0028  Score=63.69  Aligned_cols=181  Identities=8%  Similarity=-0.016  Sum_probs=97.9

Q ss_pred             ceEEEeeCCCeEEE-EEcCC----EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-------------
Q 018705           55 EDVSVVVSKGALYT-ATRDG----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-------------  115 (351)
Q Consensus        55 e~i~~d~~~g~lyv-~~~~g----~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-------------  115 (351)
                      .+++++|++..+.. ....|    .|+.+|..+|+............ ++++.+||+ |+++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            46789977776644 44344    79999998887754332222345 799999995 555543322             


Q ss_pred             ---eEEEcC-CC-e--EEe-cCC--CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC-----
Q 018705          116 ---LLKVTE-EG-V--EAI-VPD--ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-----  179 (351)
Q Consensus       116 ---l~~~~~-~g-~--~~l-~~~--~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-----  179 (351)
                         ++..+. ++ .  ..+ ...  .....++.+++||+ |+++.....             .....|+.+|.++     
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------------~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC-------------DPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS-------------SSCCEEEEEEGGGSSSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC-------------CCccEEEEEECccccccc
Confidence               565553 33 1  232 221  13456789999995 444432100             0134788888765     


Q ss_pred             -C--eEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCc---eeEEeccCCC-CCCceEECCCCCEEEE
Q 018705          180 -K--ETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGI---LDAFIENLPG-GPDNINLAPDGSFWIG  248 (351)
Q Consensus       180 -~--~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~---~~~~~~~~~g-~pd~i~~d~~G~lwva  248 (351)
                       +  +.+.+....... .-.++++|+.+|+.....    ++++.+...+.   .+.+....+. ...++.+.+++.++++
T Consensus       274 ~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             CSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             CCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence             4  344444332222 235788999888865432    45443322222   2333322211 1234555555666666


Q ss_pred             Ee
Q 018705          249 LI  250 (351)
Q Consensus       249 ~~  250 (351)
                      ..
T Consensus       353 ~~  354 (710)
T 2xdw_A          353 YL  354 (710)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.0069  Score=54.72  Aligned_cols=137  Identities=10%  Similarity=0.071  Sum_probs=81.2

Q ss_pred             ccccceEEcC--CCCEEEEeCCCCeEEEc--CCC-e-EEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccc
Q 018705           94 QSLLGLTTTK--DGGVILCDNEKGLLKVT--EEG-V-EAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (351)
Q Consensus        94 ~p~~gl~~d~--~G~L~v~d~~~gl~~~~--~~g-~-~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  166 (351)
                      ... .+++++  +|+++++....+.+++.  .++ . ...... ...++.++++|+|.+.++.+.               
T Consensus       127 ~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---------------  190 (343)
T 3lrv_A          127 EII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP---------------  190 (343)
T ss_dssp             CEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT---------------
T ss_pred             CEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC---------------
Confidence            355 899999  89887755555655555  355 3 333222 246889999999988777544               


Q ss_pred             cCCceEEEEeCCCCeEE--Eeec-CccccceEEEcCCCCEEEEEecce-eEEe-ecCC-CCceeEEeccCCCCCC---ce
Q 018705          167 KPYGQLRKYDPKLKETT--VLHE-GFYFANGIALSKNEDFVVVCESWK-RYWL-KGDR-AGILDAFIENLPGGPD---NI  237 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~--~~~~-~~~~~ngi~~~~dg~~lyv~~~~~-~~~i-~~~~-~~~~~~~~~~~~g~pd---~i  237 (351)
                        +|.|..||..+++..  .+.. .....+.++++|++..|..+..+. ++|= .... ....+.+..  +..+-   .+
T Consensus       191 --dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~  266 (343)
T 3lrv_A          191 --DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTY  266 (343)
T ss_dssp             --TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-------CCEEE
T ss_pred             --CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeeccccc--ccccccceEE
Confidence              568999998776543  3322 244567899999999777766444 5552 1111 011111100  11222   38


Q ss_pred             EECCCCCEEEEEe
Q 018705          238 NLAPDGSFWIGLI  250 (351)
Q Consensus       238 ~~d~~G~lwva~~  250 (351)
                      +++++|++.++..
T Consensus       267 ~~~~~g~~l~~~s  279 (343)
T 3lrv_A          267 DIDDSGKNMIAYS  279 (343)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCEEEEec
Confidence            9999998776643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.03  E-value=0.0018  Score=58.45  Aligned_cols=176  Identities=7%  Similarity=0.023  Sum_probs=99.6

Q ss_pred             CCceEEEeeCCCeEEEEE-cC--C--EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeC--------------
Q 018705           53 HPEDVSVVVSKGALYTAT-RD--G--WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN--------------  112 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~-~~--g--~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~--------------  112 (351)
                      ...+++++|++..++... ..  +  .|+.++..+++.+....... .. .+++.++|+ |+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            356789998777665433 32  3  49999987887765544434 66 889999996 554431              


Q ss_pred             -------------CCCeEEEcC-CC-e-EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEe
Q 018705          113 -------------EKGLLKVTE-EG-V-EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (351)
Q Consensus       113 -------------~~gl~~~~~-~g-~-~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (351)
                                   ...++.++. +| . +.+.. . .+.++++++|| ++++.....-  ..      ...+...|+.+|
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~--~~------~~~~~~~l~~~d  206 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI--IP------QYFKFWDIYIWE  206 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS--SC------CSSCCEEEEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccc--cc------cccccccEEEeC
Confidence                         134666664 55 5 55544 2 67788999999 7665532100  00      000134799999


Q ss_pred             CCCCeEEEeecCccccceEEEcCCCCEEEEEec-c------e-eEEeecCCCCceeEEeccCCCCCCc-eEECCCCCEEE
Q 018705          177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCES-W------K-RYWLKGDRAGILDAFIENLPGGPDN-INLAPDGSFWI  247 (351)
Q Consensus       177 ~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~-~------~-~~~i~~~~~~~~~~~~~~~~g~pd~-i~~d~~G~lwv  247 (351)
                        +++.+.+... ...  ..++|||+.|++... .      . .+++-+  .++...+.........+ +.++ +| +++
T Consensus       207 --~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          207 --DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             --TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred             --CCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence              5776665543 222  233899997766442 2      1 455543  23333332221222233 6677 77 666


Q ss_pred             EEe
Q 018705          248 GLI  250 (351)
Q Consensus       248 a~~  250 (351)
                      ...
T Consensus       278 ~~~  280 (347)
T 2gop_A          278 TLF  280 (347)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.0012  Score=61.66  Aligned_cols=141  Identities=9%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcC---CCeEEEEee-------------cCCccccceE--EcCCCCEEEEeCCC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILH---NETLVNWKH-------------IDSQSLLGLT--TTKDGGVILCDNEK  114 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~---~g~~~~~~~-------------~~~~p~~gl~--~d~~G~L~v~d~~~  114 (351)
                      ...++++.+++..++++..||.|..||..   +++......             ...... .+.  +.+++.++++....
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            45688999777788999999999988863   333221110             111222 333  44677666555555


Q ss_pred             CeEEEc--CCC--eEEecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--
Q 018705          115 GLLKVT--EEG--VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--  186 (351)
Q Consensus       115 gl~~~~--~~g--~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--  186 (351)
                      +.+++.  .++  ...+..  ....+++++++++|.+.++.+.                 +|.|..||..+++.....  
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~  254 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-----------------RGIIDIWDIRFNVLIRSWSF  254 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEEEBC
T ss_pred             CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEEcCCccEEEEEec
Confidence            655555  345  455544  2367899999999987776654                 467999998777654322  


Q ss_pred             cCccccceEEEc----CCCCEEEEEecce
Q 018705          187 EGFYFANGIALS----KNEDFVVVCESWK  211 (351)
Q Consensus       187 ~~~~~~ngi~~~----~dg~~lyv~~~~~  211 (351)
                      ........++++    +++..+..+..++
T Consensus       255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          255 GDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            222334567444    5665555555555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.03  E-value=0.011  Score=59.26  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             CceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecC-----------------CCeEEEEeCCC
Q 018705          287 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ-----------------SNFIGILPLDG  343 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~-----------------~~~i~~~~~~~  343 (351)
                      ..+.+..+|.++|+++-++..+.+.....  .....+|+.|+....                 ++.+..|.++.
T Consensus       496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          496 ADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CCCcEEEEECCCCceeeeeeCCCCcccCC--EEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            34678999987899999998765532221  222467888886522                 37888888873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.99  E-value=7.3e-05  Score=75.15  Aligned_cols=132  Identities=7%  Similarity=-0.023  Sum_probs=84.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCC----ccccceEEcCCCCEEE-EeC---------CCCeEEE
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVIL-CDN---------EKGLLKV  119 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~----~p~~gl~~d~~G~L~v-~d~---------~~gl~~~  119 (351)
                      +.+++|.+++ .++....++.|+.+|..+++.+.......    ... .+++++||+..+ +..         ...++.+
T Consensus        18 ~~~~~~s~dg-~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           18 TFFPNWISGQ-EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCCEESSSS-EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCccEECCCC-eEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            4478898644 55555578999999998887765543221    245 789999997443 332         1234444


Q ss_pred             cC-CC-e---EEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc----
Q 018705          120 TE-EG-V---EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF----  189 (351)
Q Consensus       120 ~~-~g-~---~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~----  189 (351)
                      +. +| .   +.+.   ..+.+++++|||+ |.++.                   .+.|+.++..+++...+....    
T Consensus        96 d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~~~~~  153 (719)
T 1z68_A           96 DLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNGRENK  153 (719)
T ss_dssp             ETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCCBTTT
T ss_pred             ECCCCccccceecC---cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCCCcCC
Confidence            53 44 3   2222   4578899999995 54442                   247888888777655443221    


Q ss_pred             ---------------cccceEEEcCCCCEEEEEec
Q 018705          190 ---------------YFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       190 ---------------~~~ngi~~~~dg~~lyv~~~  209 (351)
                                     ....++++||||+.|+++..
T Consensus       154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             eEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence                           11247999999998877553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.96  E-value=0.00095  Score=59.36  Aligned_cols=145  Identities=10%  Similarity=0.014  Sum_probs=86.8

Q ss_pred             CCCceEEEeeC--CCeEEEEEcCCEEEEEEcCCCe----------EEEEeecCCccccceEEcCC--CCEEEEeCCCCeE
Q 018705           52 NHPEDVSVVVS--KGALYTATRDGWVKYFILHNET----------LVNWKHIDSQSLLGLTTTKD--GGVILCDNEKGLL  117 (351)
Q Consensus        52 ~~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~----------~~~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~  117 (351)
                      ....++++.+.  +..++++..||.|..||..+++          ...+........ .+++.++  ++++++....+.+
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCEE
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCcE
Confidence            34568899863  6788889999999999986652          223333334556 8999988  8766654455555


Q ss_pred             EEc--CCC--eEEec-------------CCCCCcccEEEccC---CcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705          118 KVT--EEG--VEAIV-------------PDASFTNDVIAASD---GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (351)
Q Consensus       118 ~~~--~~g--~~~l~-------------~~~~~~n~l~~d~d---G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  177 (351)
                      ++.  .++  ...+.             .....+..+++.|+   +.++++...                 .+.+..++.
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----------------~~~~~~~~~  199 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-----------------EQAIIYQRG  199 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-----------------TEEEEEEEC
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-----------------CCcEEEEcc
Confidence            554  232  11110             01146677888886   655554433                 345555555


Q ss_pred             CCCeEEEee---cCccccceEEEcCCC----CEEEEEecce--eEE
Q 018705          178 KLKETTVLH---EGFYFANGIALSKNE----DFVVVCESWK--RYW  214 (351)
Q Consensus       178 ~~~~~~~~~---~~~~~~ngi~~~~dg----~~lyv~~~~~--~~~  214 (351)
                      ..++...+.   ..-.....++++|++    +.++.+..++  ++|
T Consensus       200 ~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          200 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence            555543222   223346789999998    6566666555  444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.96  E-value=0.012  Score=57.73  Aligned_cols=46  Identities=22%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS  333 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~  333 (351)
                      ...+.+..+|.++|+.+-.+..+.+..  ....+...+|++|+++..+
T Consensus       482 ~~dg~l~a~D~~tG~~lw~~~~~~~~~--~~p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          482 TLDGYLKALDNKDGKELWNFKMPSGGI--GSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEEEEEEEEC
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCCcE--eeeEEEEECCEEEEEEECC
Confidence            334679999987999998887654421  1122234789999987533

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.004  Score=60.69  Aligned_cols=100  Identities=7%  Similarity=-0.050  Sum_probs=66.3

Q ss_pred             cccceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEecCCC-----CCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705           95 SLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        95 p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      .. ++++.++|...++....|.+++.. ++ ...+. ..     ....+++++|||++.++.+.                
T Consensus        88 V~-~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~----------------  149 (588)
T 2j04_A           88 PR-VCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE----------------  149 (588)
T ss_dssp             EE-EEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET----------------
T ss_pred             EE-EEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcC----------------
Confidence            45 889999997666555566666664 55 55554 32     24888999999976655543                


Q ss_pred             CCceEEEEeCCCCe--------EEEeecC----ccccceEEEcCCCCEEEEEecce--eEEe
Q 018705          168 PYGQLRKYDPKLKE--------TTVLHEG----FYFANGIALSKNEDFVVVCESWK--RYWL  215 (351)
Q Consensus       168 ~~g~l~~~d~~~~~--------~~~~~~~----~~~~ngi~~~~dg~~lyv~~~~~--~~~i  215 (351)
                       +|.|..||.+++.        +..+...    ......++++|||  +..+..++  ++|-
T Consensus       150 -DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd  208 (588)
T 2j04_A          150 -DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             -TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred             -CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence             5789999987764        2333211    2356789999999  55555566  6663

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.93  E-value=0.02  Score=56.43  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                      ...+.+..||.++|+++-.+..+.+.....  .....+|++|++..
T Consensus       491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P--~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQYVAIY  534 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEeeCCCCcEecc--EEEEeCCEEEEEEE
Confidence            445678999988999998887665532221  22357888888754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.92  E-value=0.00057  Score=64.25  Aligned_cols=145  Identities=9%  Similarity=0.034  Sum_probs=93.3

Q ss_pred             CCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCe----EEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc--CC-
Q 018705           52 NHPEDVSVVVSK-GALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT--EE-  122 (351)
Q Consensus        52 ~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~----~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~--~~-  122 (351)
                      ....+++++|.+ ..+.++..+|.|..||..++.    ...+......+. .+++.+++. ++++....+.+++.  .. 
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            456789999744 456678889999999987652    233333445567 999999885 66655555655555  23 


Q ss_pred             C--eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC---------------CeEEE
Q 018705          123 G--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---------------KETTV  184 (351)
Q Consensus       123 g--~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---------------~~~~~  184 (351)
                      +  +..+......+.+++++|+| .++++.+.                 +|.|..||...               ..+..
T Consensus       311 ~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  373 (430)
T 2xyi_A          311 KLKLHSFESHKDEIFQVQWSPHNETILASSGT-----------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  373 (430)
T ss_dssp             TSCSEEEECCSSCEEEEEECSSCTTEEEEEET-----------------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred             CCCeEEeecCCCCEEEEEECCCCCCEEEEEeC-----------------CCcEEEEeCCCCccccCccccccCCcceEEE
Confidence            2  55554444678899999998 57777654                 35677776543               11222


Q ss_pred             eecCccccceEEEcCCCC-EEEEEecce--eEE
Q 018705          185 LHEGFYFANGIALSKNED-FVVVCESWK--RYW  214 (351)
Q Consensus       185 ~~~~~~~~ngi~~~~dg~-~lyv~~~~~--~~~  214 (351)
                      .......+..++++|++. .+..+..++  ++|
T Consensus       374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             cCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            222234578899999998 454455455  555

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.91  E-value=0.0019  Score=57.99  Aligned_cols=137  Identities=14%  Similarity=0.064  Sum_probs=80.0

Q ss_pred             ecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE---EEEeecCCccccceEEcC--CCCEEEEeCCCCeEEEc
Q 018705           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVT  120 (351)
Q Consensus        46 i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~  120 (351)
                      +..+.-..-.++++++++..|.++..|+.|..||..+++.   ..+........ .+++.+  +|+++++-...+.++++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3333333345889998778889999999999999866643   23333334556 888864  47665555455666666


Q ss_pred             C--CC-e---EEecCCCCCcccEEEccC--CcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEee---cC
Q 018705          121 E--EG-V---EAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLH---EG  188 (351)
Q Consensus       121 ~--~g-~---~~l~~~~~~~n~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~---~~  188 (351)
                      .  ++ .   ..+......+++++++|+  |.+.++.+.                 ++.+..||..++ +.....   ..
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSSCEEECCBTTSS
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCCCcceeeeeccc
Confidence            2  44 2   223333367899999997  666666543                 456777765543 222111   11


Q ss_pred             ccccceEEEcCC
Q 018705          189 FYFANGIALSKN  200 (351)
Q Consensus       189 ~~~~ngi~~~~d  200 (351)
                      ....+.++++|+
T Consensus       150 ~~~v~~~~~~~~  161 (316)
T 3bg1_A          150 TIGCNAVSWAPA  161 (316)
T ss_dssp             SSCBCCCEECCC
T ss_pred             cCCcceEEEccc
Confidence            123456777776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.87  E-value=0.00083  Score=60.57  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEE--cCCCCEEEEeCCCCeEEEc
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT--TKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~--d~~G~L~v~d~~~gl~~~~  120 (351)
                      ....++++++++..++++..+|.|..||..+++............ .+++  +++++++++....+.+++.
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEE
Confidence            345688999777788999999999999998887765554455566 8888  8888755554444544444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.86  E-value=0.0014  Score=59.76  Aligned_cols=176  Identities=16%  Similarity=0.188  Sum_probs=102.0

Q ss_pred             eCCCCeEEEcCCC--eEEecCCCCCcccEEEccC----C----cEEEEeCCCccCCcccccccccccCCce--EEEEeCC
Q 018705          111 DNEKGLLKVTEEG--VEAIVPDASFTNDVIAASD----G----TLYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPK  178 (351)
Q Consensus       111 d~~~gl~~~~~~g--~~~l~~~~~~~n~l~~d~d----G----~ly~t~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~  178 (351)
                      +...|++.++.+|  ++.+..  ..+|.+.+-++    |    .+|+++..               ...++  ++.+||+
T Consensus        47 ~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~---------------~~~n~l~vf~iDp~  109 (355)
T 3amr_A           47 NKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS---------------EGKNTIEIYAIDGK  109 (355)
T ss_dssp             ETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS---------------TTCCEEEEEEECTT
T ss_pred             cCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC---------------CCCCeEEEEEECCC
Confidence            3344677777666  444433  45677766552    1    23555532               00234  4555888


Q ss_pred             CCeEEEee-------cCccccceEEE--cCC-CC-EEEEEecce---eEEeecCCCCc--eeEEec-cCCCCCCceEECC
Q 018705          179 LKETTVLH-------EGFYFANGIAL--SKN-ED-FVVVCESWK---RYWLKGDRAGI--LDAFIE-NLPGGPDNINLAP  241 (351)
Q Consensus       179 ~~~~~~~~-------~~~~~~ngi~~--~~d-g~-~lyv~~~~~---~~~i~~~~~~~--~~~~~~-~~~g~pd~i~~d~  241 (351)
                      +++++.+.       ..+..|.|+|+  ++. ++ ++|+++..+   .|.+.....+.  .+.... .+++.|-++..|+
T Consensus       110 ~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd  189 (355)
T 3amr_A          110 NGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD  189 (355)
T ss_dssp             TCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred             CCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence            88877662       33478999999  774 43 577776655   45554322221  121111 3556788899986


Q ss_pred             -CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECC-C----CeEEEEEECCCCCcccc
Q 018705          242 -DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGN-D----GKIIRDFNDPDATYISF  315 (351)
Q Consensus       242 -~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~----g~~~~~~~~~~g~~~~~  315 (351)
                       .|.||++...                                     .+|.+|+.+ +    ++++..+..  +.....
T Consensus       190 ~~g~Lyv~eEd-------------------------------------~GIw~~da~p~~~~~~~~v~~~~~--g~l~aD  230 (355)
T 3amr_A          190 EYGRLYIAEED-------------------------------------EAIWKFSAEPDGGSNGTVIDRADG--RHLTRD  230 (355)
T ss_dssp             TTTEEEEEETT-------------------------------------TEEEEEECSTTSCSCCEEEEEBSS--SSBCSC
T ss_pred             CCCeEEEeccc-------------------------------------ceEEEEeCCcCCCCCceEEEEecC--CccccC
Confidence             4789999643                                     258999841 2    455544422  221223


Q ss_pred             eeEEEE--EC---CEEEEEecCCCeEEEEeCC
Q 018705          316 VTSAAE--FD---GNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       316 ~~~~~~--~~---g~L~ig~~~~~~i~~~~~~  342 (351)
                      +..+..  ..   |+|++++=.++.+.+|+..
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            555543  22   5788888777889999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.86  E-value=0.0075  Score=53.36  Aligned_cols=179  Identities=13%  Similarity=0.080  Sum_probs=98.7

Q ss_pred             CceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeE---EEEeecCCccccceEEcCC--CCEEEEeCCCCeEEEc--CCC-
Q 018705           54 PEDVSVVVS--KGALYTATRDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT--EEG-  123 (351)
Q Consensus        54 pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~--~~g-  123 (351)
                      -.++++.+.  +..|.++..||.|..||..+++.   ..+........ .+++.++  |.++++....+.+++.  .++ 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            357788643  56788899999999999877643   22222233455 8889876  7666655555655554  222 


Q ss_pred             ---eEEecCCCCCcccEEEccCC-------------cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe----E-
Q 018705          124 ---VEAIVPDASFTNDVIAASDG-------------TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----T-  182 (351)
Q Consensus       124 ---~~~l~~~~~~~n~l~~d~dG-------------~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~-  182 (351)
                         ...+......++.++++|++             +++++.+.                 ++.|..||..+++    . 
T Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-----------------D~~v~lwd~~~~~~~~~~~  197 (297)
T 2pm7_B          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTYVLE  197 (297)
T ss_dssp             CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET-----------------TSCEEEEEEETTTTEEEEE
T ss_pred             ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC-----------------CCcEEEEEEcCCCceEEEE
Confidence               22232223567778888763             34444332                 4567666654432    1 


Q ss_pred             EEeecCccccceEEEcCCC---CEEEEEecce--eEEeecCCCCce--eEEe-ccCCCCCCceEECCCCCEEEEEe
Q 018705          183 TVLHEGFYFANGIALSKNE---DFVVVCESWK--RYWLKGDRAGIL--DAFI-ENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       183 ~~~~~~~~~~ngi~~~~dg---~~lyv~~~~~--~~~i~~~~~~~~--~~~~-~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ..+...-...+.++++|++   +.|..+..++  ++|-.....+..  ..+. ...++....++++++|++.++..
T Consensus       198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence            1222223456789999985   4444444455  666432211111  1111 11222233467889998766654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.84  E-value=0.00076  Score=62.81  Aligned_cols=178  Identities=13%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             CCceEEEee-CCCeEEEEEcCC----EEEEEEcCCCeEEEEeecC--------------CccccceEEcC---CCCEEEE
Q 018705           53 HPEDVSVVV-SKGALYTATRDG----WVKYFILHNETLVNWKHID--------------SQSLLGLTTTK---DGGVILC  110 (351)
Q Consensus        53 ~pe~i~~d~-~~g~lyv~~~~g----~I~~~d~~~g~~~~~~~~~--------------~~p~~gl~~d~---~G~L~v~  110 (351)
                      ...+|++|| +.+.+|++...|    .|++.+.....++.+....              .+.. .|++++   .++||++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            456899996 368899998877    7988764333455443210              1233 578885   6799998


Q ss_pred             eCCCCeEEEcCCC--eEEecCC-------------------CCCcccEEEcc--CCcEEEEeCCCccCCccccccccccc
Q 018705          111 DNEKGLLKVTEEG--VEAIVPD-------------------ASFTNDVIAAS--DGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus       111 d~~~gl~~~~~~g--~~~l~~~-------------------~~~~n~l~~d~--dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      ....++++.+..|  .+.+...                   ...+.+|++++  .+++|+....                
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~----------------  198 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS----------------  198 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC----------------
Confidence            7777888887655  4444210                   01245788887  3579987642                


Q ss_pred             CCceEEEEeCCCCeEEEeecCc-------------cccceEEEcCC-CCEEEEEecceeEEeecCCCCceeEEeccCCC-
Q 018705          168 PYGQLRKYDPKLKETTVLHEGF-------------YFANGIALSKN-EDFVVVCESWKRYWLKGDRAGILDAFIENLPG-  232 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~~~~~~~~-------------~~~ngi~~~~d-g~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g-  232 (351)
                        ++|++.+..+...+.+....             .....|+++++ .+.+|++.....|...+. ..+.+.+...++. 
T Consensus       199 --ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~  275 (394)
T 3b7f_A          199 --GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPRE  275 (394)
T ss_dssp             --BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTT
T ss_pred             --CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCC
Confidence              46777765544454443221             12456888875 356999875554443332 1222222222221 


Q ss_pred             ---CCCceEEC--CCCCEEEEEe
Q 018705          233 ---GPDNINLA--PDGSFWIGLI  250 (351)
Q Consensus       233 ---~pd~i~~d--~~G~lwva~~  250 (351)
                         +...+++|  ..+.+|+++.
T Consensus       276 ~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          276 VGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             TCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CccceEEEEECCCCCCEEEEEec
Confidence               11235666  4578999864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.83  E-value=0.015  Score=52.65  Aligned_cols=175  Identities=13%  Similarity=0.073  Sum_probs=93.3

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeecC---C-ccccceEEcCCCCEEEEeCCCCeEEEcCCC--eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHID---S-QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~~---~-~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~  125 (351)
                      ...+|++. +.+.+|+....|.|++-. +.| .++......   . ... ++++++ +++|++.....+++-...|  .+
T Consensus        37 ~~~~v~~~-~~~~~~~~G~~g~i~~s~-DgG~tW~~~~~~~~~~~~~~~-~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~  112 (327)
T 2xbg_A           37 TILDMSFI-DRHHGWLVGVNATLMETR-DGGQTWEPRTLVLDHSDYRFN-SVSFQG-NEGWIVGEPPIMLHTTDGGQSWS  112 (327)
T ss_dssp             CEEEEEES-SSSCEEEEETTTEEEEES-STTSSCEECCCCCSCCCCEEE-EEEEET-TEEEEEEETTEEEEESSTTSSCE
T ss_pred             cEEEEEEC-CCCcEEEEcCCCeEEEeC-CCCCCCeECCCCCCCCCccEE-EEEecC-CeEEEEECCCeEEEECCCCCCce
Confidence            44577776 566777766778777653 234 344432211   2 234 788875 7888876444455533334  44


Q ss_pred             EecCC--C-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc-cccceEEEcCCC
Q 018705          126 AIVPD--A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE  201 (351)
Q Consensus       126 ~l~~~--~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~ngi~~~~dg  201 (351)
                      .+...  . ..+++|++.+++++|+....                  |.|++-.-.....+.+.... ....++++++++
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITNV------------------GAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEETT------------------CCEEEESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeCC------------------ccEEEEcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence            44322  1 34567777777888876532                  45666543333444443221 234568888888


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      . +|+....+ .|...+......+......+.....+.++++|++|++..
T Consensus       175 ~-~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          175 E-YVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             C-EEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET
T ss_pred             c-EEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC
Confidence            7 55444333 333332111222222211122234567788899998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.82  E-value=0.0036  Score=56.10  Aligned_cols=192  Identities=13%  Similarity=0.065  Sum_probs=99.3

Q ss_pred             CceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeE---EEEeecCCccccceEEcCC--CCEEEEeCCCCeEEEcC--CC-
Q 018705           54 PEDVSVVVS--KGALYTATRDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVTE--EG-  123 (351)
Q Consensus        54 pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~~--~g-  123 (351)
                      -.++++.+.  +..|.++..|+.|..||..+++.   ..+........ .+++.++  |.++++....+.+++..  .+ 
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            457888642  56788899999999999877643   22222334456 8999886  76666655566666652  22 


Q ss_pred             -eEEec---CCCCCcccEEEccCC---cEEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEE---eecCcccc
Q 018705          124 -VEAIV---PDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTV---LHEGFYFA  192 (351)
Q Consensus       124 -~~~l~---~~~~~~n~l~~d~dG---~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~---~~~~~~~~  192 (351)
                       .....   .....++.++++|++   .+...... ..  ......+..+..++.|..||..++ +.+.   +...-...
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V  215 (316)
T 3bg1_A          139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG-QK--PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV  215 (316)
T ss_dssp             CEEECCBTTSSSSCBCCCEECCCCCC------CCS-CC--CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE
T ss_pred             CcceeeeeccccCCcceEEEccccCCccccccccc-cC--ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce
Confidence             22211   112456777887763   11100000 00  000011222333566666665432 2221   22222346


Q ss_pred             ceEEEcCCC----CEEEEEecce--eEEeecC-CCCc--eeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          193 NGIALSKNE----DFVVVCESWK--RYWLKGD-RAGI--LDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       193 ngi~~~~dg----~~lyv~~~~~--~~~i~~~-~~~~--~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +.++++|++    +.|..+..++  ++|-... ..+.  ...+. ...+....++++++|++.++..
T Consensus       216 ~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSG  281 (316)
T ss_dssp             EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEc
Confidence            789999986    5555555555  6663221 1111  11222 1222334578889998666554

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.81  E-value=8.4e-05  Score=72.87  Aligned_cols=71  Identities=17%  Similarity=0.150  Sum_probs=51.8

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--ccccceEEEcCCCCEEEEE
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngi~~~~dg~~lyv~  207 (351)
                      ..|..|++|++|+|||++.+..-..     ..+....++.++.+++.+++++.+...  .....|++|+||+++||++
T Consensus       476 ~~PDNL~fd~~G~LwI~eDg~~~~~-----~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          476 NSPDGLGFDKAGRLWILTDGDSSNA-----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCS-----GGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cCCcceEECCCCCEEEEecCCCccc-----ccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            6899999999999999876421111     111122345789999999998887644  3456799999999988886

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.0016  Score=63.54  Aligned_cols=141  Identities=11%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--------EEEEee----cCCccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--------LVNWKH----IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--------~~~~~~----~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      -.+++|+|++..|+++..||.|..|+.++++        +..+..    ...... .+++.++| +..+...+.+...+.
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEEC
Confidence            5689999999999999999999999987774        233321    123566 89999999 666655544444444


Q ss_pred             CC--e----EEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccc
Q 018705          122 EG--V----EAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFAN  193 (351)
Q Consensus       122 ~g--~----~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~n  193 (351)
                      ++  .    +.+. .....+.++++.  |+..++..                  .+.|..||..+++...+. ......+
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCCceEE
Confidence            33  2    2342 222578899987  45554443                  258999998888775544 4445567


Q ss_pred             eEEE--cCCCCEEEEEecce-eEEee
Q 018705          194 GIAL--SKNEDFVVVCESWK-RYWLK  216 (351)
Q Consensus       194 gi~~--~~dg~~lyv~~~~~-~~~i~  216 (351)
                      +|++  ++|+..+.++..++ ++|..
T Consensus       270 ~va~~~s~d~~~La~a~edG~klw~~  295 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSYKVLLE  295 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEEEEEES
T ss_pred             EEEeeeCCCCCEEEEEcCCCCEEEee
Confidence            8999  99997666666455 56654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.77  E-value=0.0068  Score=56.71  Aligned_cols=135  Identities=14%  Similarity=0.173  Sum_probs=76.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC--e---EEe
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--V---EAI  127 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g--~---~~l  127 (351)
                      .++++  +++.++++..||.|..||..+++... +........ .++++ ++.++.+...+.+...+ .++  .   ..+
T Consensus       177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence            45555  46788999999999999987776533 322333344 67665 23455555443343334 233  2   233


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv  206 (351)
                      ......++.+++  +|...++.+.                 +|.|..||..+++...... .......+++  +++.++.
T Consensus       253 ~~~~~~v~~~~~--~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  311 (435)
T 1p22_A          253 VGHRAAVNVVDF--DDKYIVSASG-----------------DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVS  311 (435)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEE
T ss_pred             cCCCCcEEEEEe--CCCEEEEEeC-----------------CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEE
Confidence            332245566666  5555554433                 4689999988776543332 2233445555  4566777


Q ss_pred             Eecce--eEE
Q 018705          207 CESWK--RYW  214 (351)
Q Consensus       207 ~~~~~--~~~  214 (351)
                      +..++  ++|
T Consensus       312 g~~dg~i~iw  321 (435)
T 1p22_A          312 GSSDNTIRLW  321 (435)
T ss_dssp             EETTSCEEEE
T ss_pred             EeCCCeEEEE
Confidence            76666  444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.77  E-value=0.022  Score=51.85  Aligned_cols=196  Identities=12%  Similarity=0.087  Sum_probs=101.6

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEE-EEeCCCCeEEEc--CCC--eEE
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVT--EEG--VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~-v~d~~~gl~~~~--~~g--~~~  126 (351)
                      ..-.++++++++..+.++..+ ++..|+..+++....... .... .+.+..++++. ++....+.++++  .++  ...
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~   96 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM-RHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR   96 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC-SCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec-CCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence            345699999766666666655 477888765544322221 1233 45666666544 444444566666  355  333


Q ss_pred             ecCCCCCcccEEEcc-------CCcEEEEeCCCc-cCCcccc----------ccc-cc-ccCCceEEEEeCCCCe-----
Q 018705          127 IVPDASFTNDVIAAS-------DGTLYFTVASTK-YTPTDFY----------KDM-AE-GKPYGQLRKYDPKLKE-----  181 (351)
Q Consensus       127 l~~~~~~~n~l~~d~-------dG~ly~t~~~~~-~~~~~~~----------~~~-~~-~~~~g~l~~~d~~~~~-----  181 (351)
                      +... ..+.++.+++       ++.+++=+.... -......          ..+ .. +...|.|..||..+++     
T Consensus        97 ~~~~-~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~  175 (355)
T 3vu4_A           97 IKVD-APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQ  175 (355)
T ss_dssp             EECS-SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------
T ss_pred             EECC-CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccc
Confidence            3322 2344444444       444443332111 0000000          001 11 4567889999987654     


Q ss_pred             ------------EEEeecCccccceEEEcCCCCEEEEEeccee-EEeecCCCCc-eeEEecc-CCCCCCceEECCCCCEE
Q 018705          182 ------------TTVLHEGFYFANGIALSKNEDFVVVCESWKR-YWLKGDRAGI-LDAFIEN-LPGGPDNINLAPDGSFW  246 (351)
Q Consensus       182 ------------~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~-~~i~~~~~~~-~~~~~~~-~~g~pd~i~~d~~G~lw  246 (351)
                                  ...+...-.....++++|||+.|..+..++. +.+-+...++ ...+..+ ..+....++++++|++.
T Consensus       176 ~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          176 DQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKL  255 (355)
T ss_dssp             -----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred             cccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEE
Confidence                        3333333445678999999997766666553 4443333333 2223211 23334567899999877


Q ss_pred             EEEec
Q 018705          247 IGLIK  251 (351)
Q Consensus       247 va~~~  251 (351)
                      ++...
T Consensus       256 ~s~s~  260 (355)
T 3vu4_A          256 AVVSD  260 (355)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            76654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.74  E-value=0.038  Score=54.14  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=35.8

Q ss_pred             CceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          287 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      ..+.+..+|+++|++.-.+.....  . ....+...++.+|+++. .+.+..++.++-
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~--~-~~~~~~t~gg~v~~g~~-dg~l~a~D~~tG  495 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFA--A-WGGTLYTKGGLVWYATL-DGYLKALDNKDG  495 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSC--C-CSBCEEETTTEEEEECT-TSEEEEEETTTC
T ss_pred             CCCeEEEEECCCCCEEEEecCCCC--c-cceeEEECCCEEEEEcC-CCeEEEEECCCC
Confidence            347899999878988777653221  1 11233445789999875 677888886653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.032  Score=55.80  Aligned_cols=54  Identities=7%  Similarity=-0.084  Sum_probs=36.5

Q ss_pred             ceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          288 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       288 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      .+.|..+|+.+|+++-.+....  .. .-..+...++.+|+++. .+.+..+++.+-+
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~--~~-~~g~~~~~g~~v~~g~~-dg~l~a~D~~tG~  509 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVS--PW-NGGTLTTAGNVVFQGTA-DGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS--SC-CCCEEEETTTEEEEECT-TSEEEEEETTTCC
T ss_pred             ccEEEEEeCCCCcEEeecCCCC--CC-cCcceEeCCCEEEEECC-CCcEEEEECCCCc
Confidence            4789999997899877665322  11 11234456788999865 7888888877544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.73  E-value=0.0002  Score=66.37  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEe-CCCCeEEEcC-CC--eEEecCC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD-NEKGLLKVTE-EG--VEAIVPD  130 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d-~~~gl~~~~~-~g--~~~l~~~  130 (351)
                      .+++++  ++.+|+++.+|.|+.+|.++|+..--... +... ...+-.+|.+|++. ..+.++.++. +|  ...+...
T Consensus         3 ssP~v~--~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            3 STVTLP--ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             -----C--TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             CCCeee--CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            455664  79999999999999999989976422222 3333 33333567677763 4456777775 66  3333221


Q ss_pred             C-CCc-ccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEe
Q 018705          131 A-SFT-NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       131 ~-~~~-n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      . ... ...+++.++.+|+...                  ++.|+.+|+++|+.......   ...+..+|+++.+|++.
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~------------------dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~  137 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKK------------------QDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGR  137 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEE------------------EEEEEEECCC-------------------------EEEEE
T ss_pred             CccccccCceEecCCEEEEEeC------------------CCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEe
Confidence            1 000 1112223455655332                  46799999988876432211   11234556777788876


Q ss_pred             cceeE
Q 018705          209 SWKRY  213 (351)
Q Consensus       209 ~~~~~  213 (351)
                      .++.+
T Consensus       138 ~dg~v  142 (369)
T 2hz6_A          138 TEYTI  142 (369)
T ss_dssp             EEEEE
T ss_pred             cCCEE
Confidence            55533

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.0014  Score=66.54  Aligned_cols=179  Identities=13%  Similarity=0.096  Sum_probs=104.3

Q ss_pred             CCceEEEeeC--CCeEEEEEcCCEEEEEEcCCCeEEE---EeecCCccccceEEcCC--CCEEEEeCCCCeEEEc--CCC
Q 018705           53 HPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT--EEG  123 (351)
Q Consensus        53 ~pe~i~~d~~--~g~lyv~~~~g~I~~~d~~~g~~~~---~~~~~~~p~~gl~~d~~--G~L~v~d~~~gl~~~~--~~g  123 (351)
                      .-.++++.++  +..+.++..||.|..||..+++...   +........ .+++.++  |+++++....+.+++.  .++
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            3457888765  6788899999999999987775322   222334455 8999988  8766665555665554  222


Q ss_pred             ----eEEecCCCCCcccEEEcc-------------CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe----E
Q 018705          124 ----VEAIVPDASFTNDVIAAS-------------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----T  182 (351)
Q Consensus       124 ----~~~l~~~~~~~n~l~~d~-------------dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~  182 (351)
                          ...+......+.+++++|             +|.+.++.+.                 +|.|..||..++.    .
T Consensus       134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----------------dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET-----------------TSCEEEEEEETTTTEEEE
T ss_pred             CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-----------------CCeEEEEeccCCccccee
Confidence                222322235677888887             4555544433                 4667777755432    1


Q ss_pred             E-EeecCccccceEEEcCC---CCEEEEEecce--eEEeecCCCCc-e-eEEe-ccCCCCCCceEECCCCCEEEEE
Q 018705          183 T-VLHEGFYFANGIALSKN---EDFVVVCESWK--RYWLKGDRAGI-L-DAFI-ENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       183 ~-~~~~~~~~~ngi~~~~d---g~~lyv~~~~~--~~~i~~~~~~~-~-~~~~-~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      . .+........+++++|+   ++.++.+..++  ++|-....... . .... ....+....++++++|.+.++.
T Consensus       197 ~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            1 11222345678999999   77666666665  55532111111 0 1111 0122334567888888755554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.63  E-value=0.03  Score=50.56  Aligned_cols=173  Identities=6%  Similarity=0.019  Sum_probs=92.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCC-eEEEEeec---CCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eEEec
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV  128 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g-~~~~~~~~---~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~~l~  128 (351)
                      .+|+++ . +.+|+....|.|++- .+.| .++.....   .+.+. .|++..++++|++....++++-...|  .+...
T Consensus        83 ~~i~~~-~-~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~  158 (327)
T 2xbg_A           83 NSVSFQ-G-NEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALV  158 (327)
T ss_dssp             EEEEEE-T-TEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEE
T ss_pred             EEEEec-C-CeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEee
Confidence            367776 3 678877777877774 3334 34443321   23456 78877788899887655666655445  44443


Q ss_pred             CC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEEEeecC-ccccceEEEcCCCCEEE
Q 018705          129 PD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEG-FYFANGIALSKNEDFVV  205 (351)
Q Consensus       129 ~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~~~~-~~~~ngi~~~~dg~~ly  205 (351)
                      .. .....+++++++|.+|+....                  |.+++-+.. ....+.+... -.....++++++++ +|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~g~~------------------G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~  219 (327)
T 2xbg_A          159 QEAIGVMRNLNRSPSGEYVAVSSR------------------GSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LW  219 (327)
T ss_dssp             CSCCCCEEEEEECTTSCEEEEETT------------------SSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EE
T ss_pred             cCCCcceEEEEEcCCCcEEEEECC------------------CcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EE
Confidence            32 245677888888888865532                  456665422 2223332211 12345677888886 67


Q ss_pred             EEecceeEEeecCCCCc-eeEEecc-CCCC--CCceEECCCCCEEEEEe
Q 018705          206 VCESWKRYWLKGDRAGI-LDAFIEN-LPGG--PDNINLAPDGSFWIGLI  250 (351)
Q Consensus       206 v~~~~~~~~i~~~~~~~-~~~~~~~-~~g~--pd~i~~d~~G~lwva~~  250 (351)
                      +....+.+.......+. .+..... ++..  ...+.+++++.+|++..
T Consensus       220 ~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          220 MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            65544433322111111 1111101 1110  12345677888988754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00054  Score=66.66  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=93.5

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE--EEEeecCCccccce--EEcCCC-CEEEEeCCCCeEEEcC--CC--
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGL--TTTKDG-GVILCDNEKGLLKVTE--EG--  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~--~~~~~~~~~p~~gl--~~d~~G-~L~v~d~~~gl~~~~~--~g--  123 (351)
                      ...++++.+ ++.|.++..||.|..||..+++.  ..+........ .+  ++.++| +++++.+..+.++++.  ++  
T Consensus       268 ~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          268 LITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             CEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             CEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            345788874 57899999999999999876532  22333334445 77  456777 7877777778888873  44  


Q ss_pred             eEEecCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE-EEeecCccccceEEEcCC
Q 018705          124 VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKN  200 (351)
Q Consensus       124 ~~~l~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngi~~~~d  200 (351)
                      ...+....  ..+..++++|+|..+++.+.                 ++.|..||..+++. ..+.......+.|+++|+
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            33332211  24678999999988777654                 35688888776543 333444456788999999


Q ss_pred             CCEEEEEecce
Q 018705          201 EDFVVVCESWK  211 (351)
Q Consensus       201 g~~lyv~~~~~  211 (351)
                      |+.|..+..++
T Consensus       409 g~~l~Sgs~Dg  419 (524)
T 2j04_B          409 HPMVLAGSADG  419 (524)
T ss_dssp             CCBCEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            99666666555

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.59  E-value=0.0024  Score=54.32  Aligned_cols=132  Identities=13%  Similarity=0.015  Sum_probs=79.6

Q ss_pred             ccccceEEcCCCCEEEEeCCCCeEEEcC-C-------C-eEEecC-CCCCcccEEEccCCcEEEEeCCCccCCccccccc
Q 018705           94 QSLLGLTTTKDGGVILCDNEKGLLKVTE-E-------G-VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDM  163 (351)
Q Consensus        94 ~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~-------g-~~~l~~-~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~  163 (351)
                      +.. .++++++|.||++ ....++++++ +       + .+.+.. ..+....+.+|++|.||+..              
T Consensus        42 ~~~-~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~--------------  105 (236)
T 1tl2_A           42 NFK-FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--------------  105 (236)
T ss_dssp             TCS-EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--------------
T ss_pred             cce-eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC--------------
Confidence            344 8999999999999 4556999985 5       2 233322 12456889999999999983              


Q ss_pred             ccccCCceEEEEeCCCCe-E------EEeec-CccccceEEEcCCCCEEEEEeccee-EEeecCCCCc------eeEEe-
Q 018705          164 AEGKPYGQLRKYDPKLKE-T------TVLHE-GFYFANGIALSKNEDFVVVCESWKR-YWLKGDRAGI------LDAFI-  227 (351)
Q Consensus       164 ~~~~~~g~l~~~d~~~~~-~------~~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~-~~i~~~~~~~------~~~~~-  227 (351)
                           +|.|+|+++.+.. -      +.+.. +...-.-|.++|+|. ||... +++ |+...+....      .+.+. 
T Consensus       106 -----dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~  178 (236)
T 1tl2_A          106 -----KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQFYKALPPVSNQDNWLARATKIGQ  178 (236)
T ss_dssp             -----TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEEEEECCCSSTTCCHHHHCEEEES
T ss_pred             -----CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcEEecCCCCCCCcccccccceecc
Confidence                 3689999874311 1      12222 223346689999998 98877 553 3333221111      11221 


Q ss_pred             ccCCCCCCceEECCCCCEEEEE
Q 018705          228 ENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       228 ~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      ....-+ .-+.++++|+||...
T Consensus       179 ~g~~~y-r~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          179 GGWDTF-KFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             SSGGGE-EEEEECTTSCEEEEE
T ss_pred             CCcceE-EEEEECCCCcEEEEe
Confidence            110001 114688889888876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0025  Score=66.07  Aligned_cols=140  Identities=11%  Similarity=0.008  Sum_probs=91.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC-eEEec-
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-VEAIV-  128 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g-~~~l~-  128 (351)
                      -.+++|.+ +..|.++..|+.|..||..+++.. .+. ...... .++++++|+..++....|.++++ . .+ ...+. 
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            46889996 666888899999999999777643 332 334566 89999999765544445555555 3 44 32211 


Q ss_pred             -----------CCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc-------
Q 018705          129 -----------PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-------  189 (351)
Q Consensus       129 -----------~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-------  189 (351)
                                 .....+.+++++|++ .+.++...                 +|.+ .||..+++........       
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-----------------dg~v-lWd~~~~~~~~~~~~~~~~g~~~  199 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-----------------YVTL-TYSLVENEIKQSFIYELPPFAPG  199 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS-----------------SCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEeC-----------------CCcE-EEECCCCceEEEEecccCCcCCC
Confidence                       112578899999964 44444332                 4678 9998877654332211       


Q ss_pred             ------------cccceEEEcCCCCEEEEEecce--eEE
Q 018705          190 ------------YFANGIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       190 ------------~~~ngi~~~~dg~~lyv~~~~~--~~~  214 (351)
                                  ...+.++++|||+.|..+..++  ++|
T Consensus       200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence                        3467899999999776666666  566

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0039  Score=60.55  Aligned_cols=176  Identities=14%  Similarity=0.041  Sum_probs=102.6

Q ss_pred             CceEEEeeC------CCeEEEEEcCCEEEEEEcCCCeEE------------EEeecCCccccceEEcCCCCEEEEeCCCC
Q 018705           54 PEDVSVVVS------KGALYTATRDGWVKYFILHNETLV------------NWKHIDSQSLLGLTTTKDGGVILCDNEKG  115 (351)
Q Consensus        54 pe~i~~d~~------~g~lyv~~~~g~I~~~d~~~g~~~------------~~~~~~~~p~~gl~~d~~G~L~v~d~~~g  115 (351)
                      ..+++|.|.      ++.|.++..||.|..||..+++..            .+........ ++++.+++.|..+. ..|
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs-~Dg  287 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGF-KNG  287 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEE-TTS
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEe-CCC
Confidence            467888864      357778889999999998655311            1222223445 78887766555554 456


Q ss_pred             eEEEc-C-CC---eEEecCCCCCcccE--EEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-Eee
Q 018705          116 LLKVT-E-EG---VEAIVPDASFTNDV--IAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH  186 (351)
Q Consensus       116 l~~~~-~-~g---~~~l~~~~~~~n~l--~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~  186 (351)
                      .+++. . ++   ...+......+++|  +..++| .+.+|.+.                 ++.|..||..+++.. .+.
T Consensus       288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----------------D~tvklWD~~~~~~~~~~~  350 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----------------DGYFYIFNPKDIATTKTTV  350 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----------------TSEEEEECGGGHHHHCEEE
T ss_pred             EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-----------------CCeEEEEECCCCCcccccc
Confidence            66665 2 33   33343333567888  457787 78777765                 567888887654321 111


Q ss_pred             cCc--cccceEEEcCCCCEEEEEecce--eEEeecCCCCc-eeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          187 EGF--YFANGIALSKNEDFVVVCESWK--RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       187 ~~~--~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ...  .....++++|+++.+..+..++  ++|-  ...+. ...+. ...+....++++++|.+.++...
T Consensus       351 ~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd--~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          351 SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP--SRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             EECSCCSCCCEEEETTTTEEEEECSSSEEEEEE--TTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEET
T ss_pred             cccccCcccceEeCCCcCeEEEeCCCCcEEEEE--Ccccccceeee-cCCCceEEEEeCCCCCeEEEEEC
Confidence            111  1246799999998554444444  5552  22222 12222 22233456788888886666543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.47  E-value=0.026  Score=56.92  Aligned_cols=140  Identities=11%  Similarity=0.048  Sum_probs=76.6

Q ss_pred             ceEEEeeCCCeE-EEEEcCC----EEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCC--------------
Q 018705           55 EDVSVVVSKGAL-YTATRDG----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG--------------  115 (351)
Q Consensus        55 e~i~~d~~~g~l-yv~~~~g----~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g--------------  115 (351)
                      .+++++|++..+ |.....|    .|+.+|..+|+............ ++++.+|..|+++.....              
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence            356888776665 4444333    49999998887644321112224 788887744555543222              


Q ss_pred             eEEEcC-CC-e--EEecCC-C--CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCC--e-EEE
Q 018705          116 LLKVTE-EG-V--EAIVPD-A--SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--E-TTV  184 (351)
Q Consensus       116 l~~~~~-~g-~--~~l~~~-~--~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~-~~~  184 (351)
                      +++.+. ++ .  ..+... .  .+..++.+++||+ |.++.....             .....|+.+|.+++  + .+.
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-------------~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT-------------DPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT-------------CSCCEEEEEEEETTEECCCEE
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC-------------CCcceEEEEECCCCCCcccEE
Confidence            455443 23 1  222221 1  2456788999995 554432200             01347888887766  4 455


Q ss_pred             eecCccccceEEEcCCCCEEEEEec
Q 018705          185 LHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       185 ~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      +.......... ++++|+.+|+...
T Consensus       312 l~~~~~~~~~~-~~~dg~~l~~~s~  335 (741)
T 1yr2_A          312 LIPDLKAQWDF-VDGVGDQLWFVSG  335 (741)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEEC
T ss_pred             ecCCCCceEEE-EeccCCEEEEEEC
Confidence            54433222223 4588888888654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.40  E-value=0.097  Score=52.25  Aligned_cols=178  Identities=11%  Similarity=0.042  Sum_probs=92.9

Q ss_pred             ceEEEeeCCCeEEEEEcCCE-------------EEEEEcCCCeE---EEEeecC--CccccceEEcCCCC-EEEEeCCC-
Q 018705           55 EDVSVVVSKGALYTATRDGW-------------VKYFILHNETL---VNWKHID--SQSLLGLTTTKDGG-VILCDNEK-  114 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~-------------I~~~d~~~g~~---~~~~~~~--~~p~~gl~~d~~G~-L~v~d~~~-  114 (351)
                      .+++|.|++..|+.+..+..             |++++..+++.   ..+....  .... ++.++++|+ |.++.... 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL-QSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE-EEEECTTSCCEEEEEEETT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE-EEEECCCCCEEEEEEeCCC
Confidence            57899977777766655443             99999866642   2222211  2345 788999995 44433222 


Q ss_pred             ---CeEEEcC-CC-eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe---EEEee
Q 018705          115 ---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLH  186 (351)
Q Consensus       115 ---gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~  186 (351)
                         .++.++. ++ .+.+............ ++|.+|+....              ..+.++|+++|.++++   .+.+.
T Consensus       250 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~--------------~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDE--------------GAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECT--------------TCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECC--------------CCCCCEEEEEeCCCCCccCCeEEe
Confidence               4666654 55 5555443222233333 55557776542              1125689999987665   23333


Q ss_pred             c-C-ccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEe
Q 018705          187 E-G-FYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       187 ~-~-~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                      . . -....+++++ ++ .++++....   ++|+.+...+..+.+.....+...++.++++|. ++++..
T Consensus       315 ~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          315 PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFT  382 (695)
T ss_dssp             CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred             cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEc
Confidence            2 2 2234567777 44 466654332   666554221222222101112223455667775 555543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.37  E-value=0.0054  Score=55.95  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             EEcCCEEEEEEcCCCe-----------------EEEEeecCCccccceEEcCCCCEEEEeCCCCe-EEEc--CCC--eEE
Q 018705           69 ATRDGWVKYFILHNET-----------------LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGL-LKVT--EEG--VEA  126 (351)
Q Consensus        69 ~~~~g~I~~~d~~~g~-----------------~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl-~~~~--~~g--~~~  126 (351)
                      +..+|.|..||..+++                 ...+........ .++++++|+++++....+. ++++  .++  ...
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            4678888888886654                 333433345566 8999999988777666674 7776  355  555


Q ss_pred             ecC--CCCCcccEEEccCCcEEEEeCC
Q 018705          127 IVP--DASFTNDVIAASDGTLYFTVAS  151 (351)
Q Consensus       127 l~~--~~~~~n~l~~d~dG~ly~t~~~  151 (351)
                      +..  ....+++++++|||.+.++.+.
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence            552  3367899999999988777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.37  E-value=0.019  Score=54.20  Aligned_cols=139  Identities=9%  Similarity=0.044  Sum_probs=86.6

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCC-----------CeEEEE-----eecCCccccceEEcCCCCEEE----EeCC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHN-----------ETLVNW-----KHIDSQSLLGLTTTKDGGVIL----CDNE  113 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~-----------g~~~~~-----~~~~~~p~~gl~~d~~G~L~v----~d~~  113 (351)
                      ...+++++.++.++++..++ +..++..+           ......     ......+. .++++++|++++    +...
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH-HLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE-EEEECTTSCEEEEEEEETTT
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc-EEEEcCCCCEEEEEEeccCC
Confidence            45789998888999988777 66654210           111111     11123466 899999998666    3344


Q ss_pred             CCeEEEcC--C---------C-eEEecC---CCCCcccEEEccC-CcEEEEeCCCccCCcccccccccccCCceEEEEeC
Q 018705          114 KGLLKVTE--E---------G-VEAIVP---DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (351)
Q Consensus       114 ~gl~~~~~--~---------g-~~~l~~---~~~~~n~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  177 (351)
                      .+.++++.  +         . +..+..   ....+.++++.|+ +.++++.+.                 +|.|..||.
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~-----------------Dg~v~iwD~  179 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA-----------------DGSIAVLQV  179 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET-----------------TSCEEEEEE
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC-----------------CCeEEEEEc
Confidence            45555541  1         1 111111   1256889999997 677776654                 567899988


Q ss_pred             CCCeEEEee-cCccccceEEEcCCCCEEEEEecce
Q 018705          178 KLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       178 ~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .+++..... .......+++++|+|+.|+.+..++
T Consensus       180 ~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg  214 (434)
T 2oit_A          180 TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG  214 (434)
T ss_dssp             SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC
Confidence            766433222 2234578899999999888877666

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.35  E-value=0.15  Score=50.85  Aligned_cols=58  Identities=17%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecC---------------------CCeEEEEeCCCC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ---------------------SNFIGILPLDGP  344 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~---------------------~~~i~~~~~~~~  344 (351)
                      ...+.+..+|.++|+++..+..+.+.....+  ....+|++|++..+                     .+.|..+.+.+.
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~--~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~  553 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPM--TFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK  553 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred             CCcccchhhhhhcChhheEecCCCCcccCce--EEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCcc
Confidence            3346789999878999998887654322222  22568888887654                     347888887765


Q ss_pred             C
Q 018705          345 E  345 (351)
Q Consensus       345 ~  345 (351)
                      +
T Consensus       554 ~  554 (668)
T 1kv9_A          554 A  554 (668)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.29  E-value=0.015  Score=52.21  Aligned_cols=169  Identities=9%  Similarity=-0.046  Sum_probs=94.1

Q ss_pred             CceEEEeeCCCeEEEEEc---------------------------CCEEEEEEcCCCeE-EEEeecCCccccceEEcCCC
Q 018705           54 PEDVSVVVSKGALYTATR---------------------------DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDG  105 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~---------------------------~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G  105 (351)
                      ..+++|+|++..|+....                           ..+|++++..+++. +.+.. . ... .++++++|
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~-~~~~spdg  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS-SGIWHRDK  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC-EEEEETTE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc-cccCCCCe
Confidence            567889877776765542                           25799999988877 55544 3 555 78899999


Q ss_pred             CEEEEe-C---------CCCeEEEcCCC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEE
Q 018705          106 GVILCD-N---------EKGLLKVTEEG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus       106 ~L~v~d-~---------~~gl~~~~~~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                       ++++. .         ...++.++ ++ .+.+... ....  .++|||+ |++........          ......|+
T Consensus       183 -~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~----------~~~~~~l~  247 (347)
T 2gop_A          183 -IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKY----------MSEHNKLY  247 (347)
T ss_dssp             -EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSC----------CCSSCEEE
T ss_pred             -EEEEEecccccccccccccEEEeC-CCceEEeccC-ccee--eECCCCCEEEEEEccccCC----------ccccceEE
Confidence             55543 2         12467777 66 5555433 2222  3388984 65544321100          01235799


Q ss_pred             EEeCCCCeEEEeecCcc-ccce-EEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          174 KYDPKLKETTVLHEGFY-FANG-IALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       174 ~~d~~~~~~~~~~~~~~-~~ng-i~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      .+|  +++.+.+..... .... ++++ |+ .++.+...+  ++| .+  .++...+... .+....+.+++  .++++.
T Consensus       248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~--~g~~~~~~~~-~~~v~~~~~s~--~~~~~~  317 (347)
T 2gop_A          248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW--DGEIKPIAKG-RHWIMGFDVDE--IVVYLK  317 (347)
T ss_dssp             EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE--SSSEEEEECS-SSEEEEEEESS--SEEEEE
T ss_pred             EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec--CCceEEEecC-CCeEEeeeeeC--cEEEEE
Confidence            999  466665544322 2333 7888 87 444444333  666 43  2443333322 22334566777  555544


Q ss_pred             e
Q 018705          250 I  250 (351)
Q Consensus       250 ~  250 (351)
                      .
T Consensus       318 ~  318 (347)
T 2gop_A          318 E  318 (347)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.26  E-value=0.0035  Score=63.30  Aligned_cols=132  Identities=11%  Similarity=-0.037  Sum_probs=79.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecC-Ccc-----ccceEEcCCCCE-EEEeCC---------CCeEE
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQS-----LLGLTTTKDGGV-ILCDNE---------KGLLK  118 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-~~p-----~~gl~~d~~G~L-~v~d~~---------~gl~~  118 (351)
                      .++.|.+++..++.+  +|.|+.++..+|+.+...... ...     . .+.+++||+. .++...         ..++.
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhccccc-ceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            378898654444444  899999999888765443221 111     2 3678999974 333321         12345


Q ss_pred             EcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc------
Q 018705          119 VTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF------  189 (351)
Q Consensus       119 ~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~------  189 (351)
                      ++. +| .+.+..........+++|||+ |.++..                   +.|+.++..+++.+.+....      
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~-------------------~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN-------------------NDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET-------------------TEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC-------------------CeEEEEECCCCceEEEcCCCCcccee
Confidence            553 55 444433234567789999994 554422                   36888887777655543221      


Q ss_pred             -------------cccceEEEcCCCCEEEEEe
Q 018705          190 -------------YFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       190 -------------~~~ngi~~~~dg~~lyv~~  208 (351)
                                   ....++++||||+.|.+..
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                         1223588999999777654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.25  E-value=0.0064  Score=58.00  Aligned_cols=117  Identities=13%  Similarity=0.085  Sum_probs=65.7

Q ss_pred             EEEEeecCCccccceEEcCCC--CEEEEeCCCCeEEEcCCC-e-----EEe----cCC-----CCCcccEEEccC----C
Q 018705           85 LVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTEEG-V-----EAI----VPD-----ASFTNDVIAASD----G  143 (351)
Q Consensus        85 ~~~~~~~~~~p~~gl~~d~~G--~L~v~d~~~gl~~~~~~g-~-----~~l----~~~-----~~~~n~l~~d~d----G  143 (351)
                      ++.+...-..|. +|++.++|  +|||++....|+.++++| .     ..+    ...     ...+-+|+++|+    |
T Consensus         6 v~~va~gL~~P~-~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~   84 (463)
T 2wg3_C            6 IQEVVSGLRQPV-GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEEEESSEE-EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred             EEEeccCCCCce-EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence            344444446798 99999998  499999876677776544 2     111    111     135677999985    8


Q ss_pred             cEEEEeCCCccCCcccccccccccCCceEEEEeCCCC--------eEEEee-----cCccccceEEEcCCCCEEEEEe
Q 018705          144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--------ETTVLH-----EGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       144 ~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~-----~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      .||++.+...-....-     ......+|.||..+.+        +.+++.     ....+...|+|+|||. |||+-
T Consensus        85 ~lYv~yt~~~~~~~~~-----~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~  156 (463)
T 2wg3_C           85 KLYVSYTTNQERWAIG-----PHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIIL  156 (463)
T ss_dssp             EEEEEEEECCCSSCSS-----SSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEE
T ss_pred             EEEEEEeCCCCCcccC-----CcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEe
Confidence            8998764210000000     0000125666643211        112222     1224456799999997 99973

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.21  E-value=0.024  Score=56.74  Aligned_cols=139  Identities=9%  Similarity=-0.012  Sum_probs=77.9

Q ss_pred             CceEEEeeCCCeE-EEEEcC----CEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCC-EEEEeCCCC-----------
Q 018705           54 PEDVSVVVSKGAL-YTATRD----GWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKG-----------  115 (351)
Q Consensus        54 pe~i~~d~~~g~l-yv~~~~----g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~d~~~g-----------  115 (351)
                      -.+++++|++..+ |.....    ..|+.+|..+|+......... ... ++++.+||+ |+.+.....           
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            3467888777665 444433    469999998887641111111 125 889999996 444443222           


Q ss_pred             --eEEEcC-CC-e--EEecCC-C--CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe
Q 018705          116 --LLKVTE-EG-V--EAIVPD-A--SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (351)
Q Consensus       116 --l~~~~~-~g-~--~~l~~~-~--~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  185 (351)
                        +++.+. ++ .  +.+... .  ....++.+++||+ |.++....              .....|+.++..+++.+.+
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG--------------WSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET--------------TTEEEEEEECTTCSSCEEE
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC--------------CCceEEEEEcCCCCceEEe
Confidence              666653 33 1  222221 1  3556788999995 55443220              0123688888766666665


Q ss_pred             ecCccccceEEEcCCCCEEEEEec
Q 018705          186 HEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       186 ~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      ............ ++|+ +|+...
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~  289 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTD  289 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEEC
T ss_pred             ecCCCceEEEEe-cCCc-EEEEEC
Confidence            544333333444 6777 777544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.20  E-value=0.098  Score=45.71  Aligned_cols=138  Identities=10%  Similarity=0.100  Sum_probs=84.0

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee---cCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI  127 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l  127 (351)
                      ..|+|+ .++.|-++. |+.|..||..+|+......   ...... .+++.++|+++++....+.++++.  ++  ...+
T Consensus        29 ~~l~WS-~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           29 NLVDWS-SGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             BCEEEC-TTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEC-CCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            568998 567666664 8899999998887644322   223355 899999998877766677777773  55  3444


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe--EEEeecCccccceEEEcCCCCEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDFVV  205 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~ngi~~~~dg~~ly  205 (351)
                      ....  ....+++.++.+.++.+.                 .+.+..++..++.  ...+.........++++++++.++
T Consensus       106 ~~h~--~~~~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A          106 TSHS--ARVGSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             ECCS--SCEEEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cCcc--ceEEEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE
Confidence            3322  222344555555555432                 3445555544332  223333344566788899998776


Q ss_pred             EEecce--eEE
Q 018705          206 VCESWK--RYW  214 (351)
Q Consensus       206 v~~~~~--~~~  214 (351)
                      .+..++  ++|
T Consensus       167 s~~~d~~i~iw  177 (318)
T 4ggc_A          167 SGGNDNLVNVW  177 (318)
T ss_dssp             EEETTSCEEEE
T ss_pred             EEecCcceeEE
Confidence            666665  555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.18  E-value=0.1  Score=52.14  Aligned_cols=138  Identities=9%  Similarity=0.040  Sum_probs=73.5

Q ss_pred             ceEEEeeCCCeE-EEEEcCC----EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC-------------C
Q 018705           55 EDVSVVVSKGAL-YTATRDG----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-------------G  115 (351)
Q Consensus        55 e~i~~d~~~g~l-yv~~~~g----~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~-------------g  115 (351)
                      .+++++|++..+ |+....|    .|+.+|..+|+..........-. ++++. ||+ |+.+....             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            466888766654 5544333    58889998887643322111123 67777 774 65554331             2


Q ss_pred             eEEEcC-CC---eEEe-cCCC---CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCC--eEEE
Q 018705          116 LLKVTE-EG---VEAI-VPDA---SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--ETTV  184 (351)
Q Consensus       116 l~~~~~-~g---~~~l-~~~~---~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~~~~  184 (351)
                      +++.+. ++   -+.+ ....   .+..++.+++||+ |+++....              .....|+.+|.+++  +.+.
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--------------~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS--------------TSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS--------------SSCCEEEEEETTSTTCCCEE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC--------------CCCcEEEEEECCCCCCceEE
Confidence            555442 22   1222 2211   2345678999995 55554321              11247889886554  4555


Q ss_pred             eecCccccceEEEcCCCCEEEEEec
Q 018705          185 LHEGFYFANGIALSKNEDFVVVCES  209 (351)
Q Consensus       185 ~~~~~~~~ngi~~~~dg~~lyv~~~  209 (351)
                      +......... .++++|+.+|+...
T Consensus       276 l~~~~~~~~~-~~~~~g~~l~~~t~  299 (693)
T 3iuj_A          276 VQGDLDADVS-LVDNKGSTLYLLTN  299 (693)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEEC
T ss_pred             EeCCCCceEE-EEeccCCEEEEEEC
Confidence            5433322212 26777777877543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.16  E-value=0.18  Score=50.31  Aligned_cols=179  Identities=14%  Similarity=0.099  Sum_probs=95.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCE----------------EEEEEcCCCeE---EEEeec--CCccccceEEcCCCC-EEEEe
Q 018705           54 PEDVSVVVSKGALYTATRDGW----------------VKYFILHNETL---VNWKHI--DSQSLLGLTTTKDGG-VILCD  111 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~----------------I~~~d~~~g~~---~~~~~~--~~~p~~gl~~d~~G~-L~v~d  111 (351)
                      ..+++|.|++..||.+..++.                |++++..+++.   ..+...  ..... ++.++++|+ |+++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~-~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG-GAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE-EEEECTTSCEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE-EEEEcCCCCEEEEEE
Confidence            457899987777777665443                99999866642   222221  12245 788999996 43333


Q ss_pred             C-----CCCeEEEcC-C------C---eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEE
Q 018705          112 N-----EKGLLKVTE-E------G---VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (351)
Q Consensus       112 ~-----~~gl~~~~~-~------g---~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (351)
                      .     ...++.++. +      +   .+.+........ -.++++| .||+....              ..+.+.|+.+
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~--------------~~~~~~l~~~  316 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNR--------------HSPNYRLINI  316 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECT--------------TCTTCEEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECC--------------CCCCCEEEEE
Confidence            2     234666652 3      3   344433322222 2467777 57776542              1124679999


Q ss_pred             eCCCCe---EEEeecCcc--ccceEEEcCCCCEEEEEecce---eEEeecCCCCc-eeEEeccCCCCCCceEECCCCC-E
Q 018705          176 DPKLKE---TTVLHEGFY--FANGIALSKNEDFVVVCESWK---RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGS-F  245 (351)
Q Consensus       176 d~~~~~---~~~~~~~~~--~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~-l  245 (351)
                      |.++++   .+.+.....  ...++++++++. ++++....   ++++-+...++ .+.+... .+...++..+++|. +
T Consensus       317 d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          317 DFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             ETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEE
T ss_pred             eCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEE
Confidence            987653   234433222  456788885554 66654322   56654432333 2222211 22223455667774 6


Q ss_pred             EEEEe
Q 018705          246 WIGLI  250 (351)
Q Consensus       246 wva~~  250 (351)
                      +++..
T Consensus       395 ~~~~s  399 (710)
T 2xdw_A          395 FYQFT  399 (710)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.14  E-value=0.13  Score=46.93  Aligned_cols=130  Identities=11%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             eEEEE-EcCCEEEEEEcCCCeEEEEeecCCccccceEEcCC----C----CEEEEeCC--C---CeEEEcC-CC-eEEec
Q 018705           65 ALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD----G----GVILCDNE--K---GLLKVTE-EG-VEAIV  128 (351)
Q Consensus        65 ~lyv~-~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~----G----~L~v~d~~--~---gl~~~~~-~g-~~~l~  128 (351)
                      .++++ ...++++.+|. +|+...... .++++ ++.+-++    |    .+++++..  .   .++.+++ ++ ++.+.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            34554 45778999999 665544332 25666 6555431    2    24666654  3   2455564 45 65553


Q ss_pred             C-------CCCCcccEEE--ccC-Cc--EEEEeCCCccCCcccccccccccCCceEEEEeC---CCCeEE----EeecCc
Q 018705          129 P-------DASFTNDVIA--ASD-GT--LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP---KLKETT----VLHEGF  189 (351)
Q Consensus       129 ~-------~~~~~n~l~~--d~d-G~--ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~---~~~~~~----~~~~~~  189 (351)
                      .       ....|+++|.  +++ |.  +|+++..                  |++..|..   ..++++    .-..-.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~------------------G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE------------------GEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS------------------SEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC------------------CeEEEEEEEeCCCCcccceEEEEecCC
Confidence            2       2268999999  774 54  5555432                  45544322   223221    111223


Q ss_pred             cccceEEEcCCCCEEEEEecceeEEe
Q 018705          190 YFANGIALSKNEDFVVVCESWKRYWL  215 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~~~~i  215 (351)
                      ..+.|++++++...||+++...-+|.
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             CCcceEEEcCCCCeEEEecccceEEE
Confidence            46889999998889999998764454

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.13  E-value=0.088  Score=48.50  Aligned_cols=99  Identities=18%  Similarity=0.128  Sum_probs=63.1

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEEEEe------ecCCccccceEEcC--------CCCEEEEeCCCCeEEEcC--CC--eEE
Q 018705           65 ALYTATRDGWVKYFILHNETLVNWK------HIDSQSLLGLTTTK--------DGGVILCDNEKGLLKVTE--EG--VEA  126 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~~~~------~~~~~p~~gl~~d~--------~G~L~v~d~~~gl~~~~~--~g--~~~  126 (351)
                      .+..+..|+.|..||.++++.....      ...+..+ .+++.+        +|+++++-...+.++++.  ++  ...
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            4556778999999988777543321      1123456 888875        788888777778888873  44  333


Q ss_pred             ecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe
Q 018705          127 IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE  181 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  181 (351)
                      +......+.++++.|++ ++.++.+.                 ++.|..||..+++
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~-----------------d~~v~~wd~~t~~  220 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGER-----------------NGNIRIFDWTLNL  220 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCCC
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCC-----------------CCEEEEEECCCCc
Confidence            32222567789999987 45555433                 4567777766544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.07  E-value=0.26  Score=48.23  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                      ...+.+..||.++|+++-.+..+.+.....  .....+|++|++..
T Consensus       504 ~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P--~~y~~~G~qYv~~~  547 (582)
T 1flg_A          504 TGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT  547 (582)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCcEEEEECCCCCEEEEecCCCCcccCc--eEEEECCEEEEEEE
Confidence            345678999987999999988766532211  22347899999854

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.04  E-value=0.0031  Score=59.65  Aligned_cols=134  Identities=13%  Similarity=0.090  Sum_probs=81.2

Q ss_pred             CCceEEEeeCCCeEEE----EEcCCEEEEEEcCCC--------e----EEEEeecCCccccceEEcCC-CCEEEEeCCCC
Q 018705           53 HPEDVSVVVSKGALYT----ATRDGWVKYFILHNE--------T----LVNWKHIDSQSLLGLTTTKD-GGVILCDNEKG  115 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv----~~~~g~I~~~d~~~g--------~----~~~~~~~~~~p~~gl~~d~~-G~L~v~d~~~g  115 (351)
                      ...+++|++++..|++    +..++.|..||..++        +    ...+......+. ++++.++ ++++++....+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            3678999977777774    455888999986433        1    111111234566 8999987 67776555556


Q ss_pred             eEEEc--CCC-e-EEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc--
Q 018705          116 LLKVT--EEG-V-EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--  189 (351)
Q Consensus       116 l~~~~--~~g-~-~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--  189 (351)
                      .++++  +++ . .........+.+++++++|...++.+.                 +|.|..||........+....  
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-----------------dg~v~iwd~~~~~~~~~~~~~~~  235 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-----------------NGTVVQYLPTLQEKKVIPCPPFY  235 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTCCEEEEECCCTTC
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-----------------CCcEEEEccCCcccccccCCccc
Confidence            66665  344 2 222222257889999999965555433                 467999998732232222111  


Q ss_pred             -----cccceEEEcCCCCEE
Q 018705          190 -----YFANGIALSKNEDFV  204 (351)
Q Consensus       190 -----~~~ngi~~~~dg~~l  204 (351)
                           .....+++++++.++
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEE
T ss_pred             CCCCceeEEEEEEecCceEE
Confidence                 134568888877543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.04  E-value=0.042  Score=54.89  Aligned_cols=84  Identities=14%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCcee-EEeccCCCCCCceEECCCCCEEE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWI  247 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~-~~~~~~~g~pd~i~~d~~G~lwv  247 (351)
                      .|.|+-+|+.+|+..-.........+..+...+..+|+++..+.+..-+...++.. .+.........-+....+|++|+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv  516 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence            37899999999987543322223344455556667888866553333223334421 12111111112234446799999


Q ss_pred             EEecC
Q 018705          248 GLIKM  252 (351)
Q Consensus       248 a~~~~  252 (351)
                      +...+
T Consensus       517 a~~~G  521 (668)
T 1kv9_A          517 AIMAG  521 (668)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.93  E-value=0.39  Score=48.01  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCC---------------------CeEEEEeCCCC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS---------------------NFIGILPLDGP  344 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~---------------------~~i~~~~~~~~  344 (351)
                      ...+.+..||.++|+++-.+..+.+.....+  ....+|+.|++...+                     ..+..|.+++.
T Consensus       493 t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~--ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~  570 (689)
T 1yiq_A          493 SADGRVIAYAADTGEKLWEQPAASGVMAAPV--TYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGT  570 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCC
T ss_pred             CCCCcEEEEECCCCccceeeeCCCCcccCce--EEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCc
Confidence            4456789999878999988887655322222  225789999886522                     47788887764


Q ss_pred             C
Q 018705          345 E  345 (351)
Q Consensus       345 ~  345 (351)
                      +
T Consensus       571 ~  571 (689)
T 1yiq_A          571 A  571 (689)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.77  E-value=0.12  Score=51.88  Aligned_cols=83  Identities=16%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             ceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCcee-EEeccCCCCCCceEECCCCCEEEE
Q 018705          170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       170 g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~-~~~~~~~g~pd~i~~d~~G~lwva  248 (351)
                      |.|.-+|++||+...........++-.++..+..+|+++.++.+..-+...|+.. .+.........-+.+..+|+.||+
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            7899999999987543322222233355566667888766664444444445432 221111111122555678999999


Q ss_pred             EecC
Q 018705          249 LIKM  252 (351)
Q Consensus       249 ~~~~  252 (351)
                      ...+
T Consensus       535 ~~~G  538 (689)
T 1yiq_A          535 FMAG  538 (689)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.76  E-value=0.12  Score=47.06  Aligned_cols=140  Identities=13%  Similarity=0.007  Sum_probs=74.3

Q ss_pred             eEEEee---CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCC---ccccceEEcCCCCEEEEeCC------------CCe
Q 018705           56 DVSVVV---SKGALYTATRDGWVKYFILHNETL-VNWKHIDS---QSLLGLTTTKDGGVILCDNE------------KGL  116 (351)
Q Consensus        56 ~i~~d~---~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~---~p~~gl~~d~~G~L~v~d~~------------~gl  116 (351)
                      .+++.+   ++..+..+..|+.|..||.++|+. ..+.....   ... .++|.++|.+.++...            .+.
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~-~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC-HKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE-EEEEEETTEEEEEEC------------CCEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE-EEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            445554   334555678899999999988875 44432111   223 4578999987654321            123


Q ss_pred             EEEc-C-CC--eEEec----CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC
Q 018705          117 LKVT-E-EG--VEAIV----PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (351)
Q Consensus       117 ~~~~-~-~g--~~~l~----~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  188 (351)
                      +++. . +|  +.++.    ++ ..-+-+..+.+|.+.++-                 ..++.|..||..+++......+
T Consensus       262 IklWd~~tgk~l~v~~~~~p~G-h~~~~lsg~~sg~~lASg-----------------S~DgTIkIWDl~tGk~l~tL~g  323 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPG-QAGRFLEGDVKDHCAAAI-----------------LTSGTIAIWDLLLGQCTALLPP  323 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTT-CCCCEEEEEEETTEEEEE-----------------ETTSCEEEEETTTCSEEEEECC
T ss_pred             EEEEECCCCEEEEEEEeeccCC-CcceeEccccCCCEEEEE-----------------cCCCcEEEEECCCCcEEEEecC
Confidence            3333 2 33  22211    00 000001111122233332                 2256799999998876544432


Q ss_pred             -ccccc-eEEEcCCCCEEEEEecce--eEE
Q 018705          189 -FYFAN-GIALSKNEDFVVVCESWK--RYW  214 (351)
Q Consensus       189 -~~~~n-gi~~~~dg~~lyv~~~~~--~~~  214 (351)
                       ...+. .++|+|||++|+-+..++  ++|
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence             22334 489999999777666665  565

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.52  E-value=0.27  Score=48.20  Aligned_cols=83  Identities=16%  Similarity=0.087  Sum_probs=43.5

Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCC--CCCceEECCCCCEE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFW  246 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g--~pd~i~~d~~G~lw  246 (351)
                      .|.|+-+|+.+|+..--.......++-.+.-.+..+|+++.++.+..-+...|+..--. .+++  ...-+....+|++|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~-~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF-QTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE-ECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe-cCCCCcccCceEEEECCEEE
Confidence            57899999999886532221111222222233456888776664333333344432111 1221  11225556789999


Q ss_pred             EEEecC
Q 018705          247 IGLIKM  252 (351)
Q Consensus       247 va~~~~  252 (351)
                      |+...+
T Consensus       544 v~~~~G  549 (582)
T 1flg_A          544 LGVTVG  549 (582)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.44  E-value=0.53  Score=43.11  Aligned_cols=66  Identities=9%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             CceEEEee--------CCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc
Q 018705           54 PEDVSVVV--------SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT  120 (351)
Q Consensus        54 pe~i~~d~--------~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~  120 (351)
                      -.+++|.|        ++..|..+..|+.|..||..++.. ........... .+++.+++ +++++....+.+++.
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~w  214 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIF  214 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEE
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEE
Confidence            45788875        345667788899999999755543 33333344556 89999887 455554455666665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.42  E-value=0.81  Score=44.92  Aligned_cols=112  Identities=17%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             eEEEeeCCCeEEEEEc-CCEEEEEEc-CCCeEEEEeecCC-----------c-cccceEEc-CCCC----EEEEeCCCCe
Q 018705           56 DVSVVVSKGALYTATR-DGWVKYFIL-HNETLVNWKHIDS-----------Q-SLLGLTTT-KDGG----VILCDNEKGL  116 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~-~g~I~~~d~-~~g~~~~~~~~~~-----------~-p~~gl~~d-~~G~----L~v~d~~~gl  116 (351)
                      ..++.  ++.+|+.+. ++.|+.+|. ++|+..--.....           . .. ++++. .+|.    +|++.....+
T Consensus        57 tP~v~--~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~dg~l  133 (599)
T 1w6s_A           57 APLVV--DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNV  133 (599)
T ss_dssp             CCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEE
T ss_pred             ccEEE--CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcCCCEE
Confidence            34554  789999998 899999999 8897631111111           1 13 66774 2456    9999877789


Q ss_pred             EEEcC-CCeEEec--CCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          117 LKVTE-EGVEAIV--PDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       117 ~~~~~-~g~~~l~--~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      +.++. +|.....  ...     .....-++ .+|.+|+......+            ...|.|+-||.++|+..
T Consensus       134 ~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          134 AALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEeccccc------------CCCCeEEEEECCCCcEE
Confidence            99995 7722221  110     01111122 25788887643111            12467888998888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.36  E-value=0.94  Score=45.08  Aligned_cols=178  Identities=13%  Similarity=0.133  Sum_probs=89.2

Q ss_pred             ceEEEeeCCCeEEEEEcC-------------CEEEEEEcCCCe---EEEEeecC---CccccceEEcCCCC-EEEEeCC-
Q 018705           55 EDVSVVVSKGALYTATRD-------------GWVKYFILHNET---LVNWKHID---SQSLLGLTTTKDGG-VILCDNE-  113 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~-------------g~I~~~d~~~g~---~~~~~~~~---~~p~~gl~~d~~G~-L~v~d~~-  113 (351)
                      .+++|. ++..||....+             .+|++++..++.   ...+....   ..-. ++.++++|+ |++.... 
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE-EEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE-EEEEcCCCCEEEEEEccC
Confidence            356777 67767665544             348888865543   22332221   1234 778899997 4343221 


Q ss_pred             ---CCeEEEcC---CC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE---
Q 018705          114 ---KGLLKVTE---EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET---  182 (351)
Q Consensus       114 ---~gl~~~~~---~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---  182 (351)
                         ..++.++.   ++ .+.+.......... ++++| .|||.....              .+.++|+.+|.++++.   
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~--------------~~~~~l~~~d~~~~~~~~~  320 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD--------------APNRRLVTVDAANPGPAHW  320 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT--------------CTTCEEEEEETTSCCGGGC
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC--------------CCCCEEEEEeCCCCCcccc
Confidence               24666662   33 45554432222222 55554 677765431              1246899999876543   


Q ss_pred             EEeecCccccceEEEcCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCC-CEEEEEec
Q 018705          183 TVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIK  251 (351)
Q Consensus       183 ~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~  251 (351)
                      +.+...-..  -+.++++++.|+++...+   ++++-+...+..+.+.-...+...++..++++ .++++...
T Consensus       321 ~~l~~~~~~--~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          321 RDLIPERQQ--VLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             EEEECCCSS--CEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             EEEecCCCC--EEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            443322211  127888888777765433   55554433222222211111111233445555 47776543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.08  E-value=0.059  Score=52.78  Aligned_cols=120  Identities=15%  Similarity=0.293  Sum_probs=72.8

Q ss_pred             CCcccEEEcc-CCcEEEEeCCCccCCcc-c-cc--ccccccCCceEEEEeCCCCe-------EEEee-------------
Q 018705          132 SFTNDVIAAS-DGTLYFTVASTKYTPTD-F-YK--DMAEGKPYGQLRKYDPKLKE-------TTVLH-------------  186 (351)
Q Consensus       132 ~~~n~l~~d~-dG~ly~t~~~~~~~~~~-~-~~--~~~~~~~~g~l~~~d~~~~~-------~~~~~-------------  186 (351)
                      .+|.++.+++ +|.+||+.+...-.... . ..  .-......|.|++|+++.++       ...+.             
T Consensus       384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~  463 (592)
T 3zwu_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence            6899999997 78999987641110000 0 00  01112345889999765321       12221             


Q ss_pred             ---------cCccccceEEEcCCCCEEEEEecce-------------eEEeecCCCCceeEEecc-CCCCCCceEECCCC
Q 018705          187 ---------EGFYFANGIALSKNEDFVVVCESWK-------------RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDG  243 (351)
Q Consensus       187 ---------~~~~~~ngi~~~~dg~~lyv~~~~~-------------~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G  243 (351)
                               ..+.+|++|+++++|+ |||++-+.             .+|..++..++...|... ...=.-|+++++||
T Consensus       464 ~~~~~~~~~~~f~~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg  542 (592)
T 3zwu_A          464 GGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ  542 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS
T ss_pred             ccccccCCCCCccCCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCC
Confidence                     1256799999999998 99977542             456555566776666532 11112367899998


Q ss_pred             C-EEEEEecC
Q 018705          244 S-FWIGLIKM  252 (351)
Q Consensus       244 ~-lwva~~~~  252 (351)
                      + |||....+
T Consensus       543 ~tlfvniQHP  552 (592)
T 3zwu_A          543 KTLFVGIQHP  552 (592)
T ss_dssp             SEEEEEEEST
T ss_pred             CEEEEEEECC
Confidence            5 89987665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.74  E-value=0.32  Score=48.88  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             ceEEEeeCCCeEEEEEcC-----CEEEEEEcCCC--e-EEEEeecCCccccceEEcCCC-CEEEEeCCC----CeEEEcC
Q 018705           55 EDVSVVVSKGALYTATRD-----GWVKYFILHNE--T-LVNWKHIDSQSLLGLTTTKDG-GVILCDNEK----GLLKVTE  121 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~-----g~I~~~d~~~g--~-~~~~~~~~~~p~~gl~~d~~G-~L~v~d~~~----gl~~~~~  121 (351)
                      .++.+++++..+++...+     ..|+.+|..++  + ++.+........ .. ++++| .|++.....    .|+.++.
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~-~~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DF-VDGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EE-EEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence            477888766666655533     48999998766  5 555543322222 23 23566 466655432    3777763


Q ss_pred             -C--C-eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceE
Q 018705          122 -E--G-VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGI  195 (351)
Q Consensus       122 -~--g-~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi  195 (351)
                       +  + .+.+... ...+.+++++ ++.++++...               ....+|+.++.+++..+.+.. ......++
T Consensus       349 ~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          349 SGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH---------------DAKSQVLAFDLDGKPAGAVSLPGIGSASGL  412 (741)
T ss_dssp             SSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE---------------TTEEEEEEEETTSCEEEECBCSSSCEEEEE
T ss_pred             CCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCceeeccCCCCeEEEEe
Confidence             3  3 3333322 2334555665 5567766532               012368889876555554432 23345678


Q ss_pred             EEcCCCCEEEEE
Q 018705          196 ALSKNEDFVVVC  207 (351)
Q Consensus       196 ~~~~dg~~lyv~  207 (351)
                      ++++|++.++++
T Consensus       413 ~~s~d~~~l~~~  424 (741)
T 1yr2_A          413 SGRPGDRHAYLS  424 (741)
T ss_dssp             ECCBTCSCEEEE
T ss_pred             ecCCCCCEEEEE
Confidence            888998866654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.96  E-value=2.1  Score=38.94  Aligned_cols=106  Identities=13%  Similarity=0.062  Sum_probs=58.2

Q ss_pred             CCEEEEEEc-CCCeEEE-EeecCCccccceEEcC---CCCEEEEeCCCCeEEEc--CCC--eEEecCCC---CCcccEEE
Q 018705           72 DGWVKYFIL-HNETLVN-WKHIDSQSLLGLTTTK---DGGVILCDNEKGLLKVT--EEG--VEAIVPDA---SFTNDVIA  139 (351)
Q Consensus        72 ~g~I~~~d~-~~g~~~~-~~~~~~~p~~gl~~d~---~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~---~~~n~l~~  139 (351)
                      ++.|..++. .+|+... ......... .++|.+   ++.++++.+..+.++++  ++|  ++.+....   .....+++
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            555666655 2343321 111112222 445554   67889887788899987  367  56664321   35566789


Q ss_pred             ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       140 d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      +|||.+.++.+....     ...+..+..++.+..||+++++..
T Consensus       235 SpdG~~lvs~s~~~~-----~w~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          235 SEMGLLFIVLSHPCA-----KESESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             EETTEEEEEEC-----------------CCEEEEEEETTTTEEE
T ss_pred             CCCCCEEEEeccCCC-----cceeeccCCCcEEEEEECCCCEEE
Confidence            999987765442100     112334455677888999888653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=94.67  E-value=0.061  Score=52.15  Aligned_cols=59  Identities=12%  Similarity=0.156  Sum_probs=39.6

Q ss_pred             CcCCCceEEEeeCCCeEEEEEc-------------CCEEEEEEcCCCeEEEEeec--CCccccceEEcCCC-CEEEE
Q 018705           50 CVNHPEDVSVVVSKGALYTATR-------------DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDG-GVILC  110 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~~-------------~g~I~~~d~~~g~~~~~~~~--~~~p~~gl~~d~~G-~L~v~  110 (351)
                      .+.+|.+|++| ..|.||+.+.             ++.++++++.+|+++.+...  ...|+ |+++++|+ .|||+
T Consensus       474 ~fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn-GiafSPD~ktLfV~  548 (592)
T 4a9v_A          474 MFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEE
T ss_pred             ccCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCcccc-CCEECCCCCEEEEE
Confidence            37889999999 5788888432             22677777767777665432  24567 77777776 35554

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=93.86  E-value=6.3  Score=39.91  Aligned_cols=96  Identities=6%  Similarity=0.035  Sum_probs=59.0

Q ss_pred             CCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecC-------CccccceEEcCC--CCEEEEeCC------CCe
Q 018705           53 HPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID-------SQSLLGLTTTKD--GGVILCDNE------KGL  116 (351)
Q Consensus        53 ~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~-------~~p~~gl~~d~~--G~L~v~d~~------~gl  116 (351)
                      ...+|+++|.+ +.+|++...|.|+|-+.....++.+....       .... .|++|+.  +.+|++...      .++
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccEE
Confidence            45688898754 78999998888999886444566543311       1245 7889874  478988643      345


Q ss_pred             EEEcCCC--eEEecCCC---------CCcccEEEccC--CcEEEEe
Q 018705          117 LKVTEEG--VEAIVPDA---------SFTNDVIAASD--GTLYFTV  149 (351)
Q Consensus       117 ~~~~~~g--~~~l~~~~---------~~~n~l~~d~d--G~ly~t~  149 (351)
                      ++-...|  .+.+....         .....+++++.  +.+|+..
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~  140 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  140 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence            5444445  44433211         12356888874  4677754

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.53  E-value=13  Score=37.50  Aligned_cols=96  Identities=8%  Similarity=0.040  Sum_probs=58.7

Q ss_pred             CCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeecC------------CccccceEEcC--CCCEEEEeC-----
Q 018705           53 HPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID------------SQSLLGLTTTK--DGGVILCDN-----  112 (351)
Q Consensus        53 ~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~~------------~~p~~gl~~d~--~G~L~v~d~-----  112 (351)
                      .-.+|+++|.+ +.+|++...|.|+|-+-....++......            .... .|++|+  .+.+|++..     
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~~~~~  100 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGDYVQW  100 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECSCTTT
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEecccccC
Confidence            45689999766 68999998888999875344555543311            1234 688887  358999764     


Q ss_pred             --CCCeEEEcCCC--eEEecCCC-------C--CcccEEEccC--CcEEEEe
Q 018705          113 --EKGLLKVTEEG--VEAIVPDA-------S--FTNDVIAASD--GTLYFTV  149 (351)
Q Consensus       113 --~~gl~~~~~~g--~~~l~~~~-------~--~~n~l~~d~d--G~ly~t~  149 (351)
                        ..++++=...|  .+.+....       .  ....|++++.  +.+|+..
T Consensus       101 ~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~  152 (763)
T 3a0f_A          101 DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS  152 (763)
T ss_dssp             CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC
T ss_pred             CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe
Confidence              23455444444  44433211       1  1146888874  5788764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=90.79  E-value=6.5  Score=39.47  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=36.9

Q ss_pred             CcccEEEc-cCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCC-eEEEeecCcc-ccceEEEcCCCCEEEEEe
Q 018705          133 FTNDVIAA-SDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFY-FANGIALSKNEDFVVVCE  208 (351)
Q Consensus       133 ~~n~l~~d-~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~-~~ngi~~~~dg~~lyv~~  208 (351)
                      ...+.+++ |||+ |.++....             +.....|+++|.+++ +.  +...+. ...+++++|||+.|+++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~-------------G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMS-------------GNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESS-------------SSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCC-------------CCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence            34567899 9995 54443320             111235999998887 52  111111 134689999998777765


Q ss_pred             c
Q 018705          209 S  209 (351)
Q Consensus       209 ~  209 (351)
                      .
T Consensus       240 ~  240 (751)
T 2xe4_A          240 K  240 (751)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.01  E-value=0.9  Score=41.15  Aligned_cols=105  Identities=8%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecC--CccccceEE---cCCCCEEEEe--CCCCeEEEcC-CCeEEecCCC---
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTT---TKDGGVILCD--NEKGLLKVTE-EGVEAIVPDA---  131 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~---d~~G~L~v~d--~~~gl~~~~~-~g~~~l~~~~---  131 (351)
                      ++.+|+++.||.|+-+|.++|+..--....  ..+. ...-   ..+|.+|+..  ..+.++.++. +|...+....   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            578999999999999999899764222221  1122 2110   0144566654  3445677774 5522222111   


Q ss_pred             --CCccc----EEE------ccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          132 --SFTND----VIA------ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       132 --~~~n~----l~~------d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                        ..|--    .++      +.+|.+|+...                  +|+++-+|..+|+.....
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------------------~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM------------------RTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEE------------------EEEEEEEETTTCCEEEEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEec------------------CCEEEEEECCCCcEEEEE
Confidence              11111    112      25667777543                  468999998888875543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=89.94  E-value=7.6  Score=35.68  Aligned_cols=126  Identities=8%  Similarity=0.081  Sum_probs=72.9

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc-CCC-eEEecC
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEAIVP  129 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~~g-~~~l~~  129 (351)
                      .+..+++  ++..|+++ .++.|..||..+-.. ........... .+..-+. ++.+++..+.++..+ +++ ...+. 
T Consensus        89 ~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~-  162 (388)
T 1xip_A           89 DVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA-  162 (388)
T ss_dssp             TEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             CeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc-
Confidence            3778888  47899998 778899998643221 11111112222 4433322 366666555555555 344 33322 


Q ss_pred             CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeE--E-Eee------c---CccccceEEE
Q 018705          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--T-VLH------E---GFYFANGIAL  197 (351)
Q Consensus       130 ~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~-~~~------~---~~~~~ngi~~  197 (351)
                        ..+.+++++++| +.+...                  +|.+..|++++++.  . .+.      +   .-.....|++
T Consensus       163 --~~Vs~v~WSpkG-~~vg~~------------------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w  221 (388)
T 1xip_A          163 --QNVTSFDVTNSQ-LAVLLK------------------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI  221 (388)
T ss_dssp             --ESEEEEEECSSE-EEEEET------------------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred             --CCceEEEEcCCc-eEEEEc------------------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence              367899999999 444332                  46678888877774  2 231      1   1244667888


Q ss_pred             cCCCCEEE
Q 018705          198 SKNEDFVV  205 (351)
Q Consensus       198 ~~dg~~ly  205 (351)
                      .+++.++.
T Consensus       222 l~~~~flv  229 (388)
T 1xip_A          222 LSPQDFLA  229 (388)
T ss_dssp             SSSSEEEE
T ss_pred             ecCCeEEE
Confidence            88877443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=85.82  E-value=0.21  Score=45.73  Aligned_cols=98  Identities=9%  Similarity=-0.026  Sum_probs=46.6

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEc-CCCCEEEEeCCCCeEEEcC-CC-e-EEecCCCCCcccE
Q 018705           62 SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE-EG-V-EAIVPDASFTNDV  137 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~~-~g-~-~~l~~~~~~~n~l  137 (351)
                      .++.+|++..+|.|+.+|.++|+.. |......   ..... .++.+|++.....++.++. +| . -.+...  .....
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~  164 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF--DYAAS  164 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--EECCB
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEE-EEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc--cccCc
Confidence            3678899888999999999888763 2211111   11122 3457888776556777774 66 2 111110  01222


Q ss_pred             EEcc----CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE
Q 018705          138 IAAS----DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (351)
Q Consensus       138 ~~d~----dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  183 (351)
                      +++.    ++.+|++..                  +|.|+.+|.++|+..
T Consensus       165 ~~~~~~~~~~~v~~~~~------------------dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          165 LPEDDVDYKMSHFVSNG------------------DGLVVTVDSESGDVL  196 (369)
T ss_dssp             CCCCCTTCCCCEEEEET------------------SCEEEEECTTTCCEE
T ss_pred             cccCCccccceEEEECC------------------CCEEEEEECCCCcEE
Confidence            3333    256777653                  367888888877753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=85.38  E-value=14  Score=33.95  Aligned_cols=129  Identities=15%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe---------EEE--EeecCCccccceEEcCCC-CEEEEeCCCCeEEEc
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET---------LVN--WKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT  120 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~---------~~~--~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~  120 (351)
                      ....+++.+..|.++++..++ +..++.++.+         ++.  ...... ++ .+++  +| .|+++ ...++..++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE--CCCEEEEE-cCCcEEEEE
Confidence            456789998888999988876 6667643222         211  112334 77 8999  55 57777 344555555


Q ss_pred             CCC---eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705          121 EEG---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (351)
Q Consensus       121 ~~g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~  197 (351)
                      -..   ...........+++..-+. ++.+..                  .+|.|++||.++++...+.   .....+++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~------------------~dG~L~v~dl~~~~~~~~~---~~Vs~v~W  170 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN-TLVILN------------------SVNDLSALDLRTKSTKQLA---QNVTSFDV  170 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS-EEEEEE------------------TTSEEEEEETTTCCEEEEE---ESEEEEEE
T ss_pred             chhhhccCccceeecceeeEEecCC-CEEEEE------------------CCCCEEEEEccCCcccccc---CCceEEEE
Confidence            211   1111111112333332222 132222                  2578999998766654433   35668999


Q ss_pred             cCCCCEEEEEecce
Q 018705          198 SKNEDFVVVCESWK  211 (351)
Q Consensus       198 ~~dg~~lyv~~~~~  211 (351)
                      ||+|  ++++..++
T Consensus       171 SpkG--~~vg~~dg  182 (388)
T 1xip_A          171 TNSQ--LAVLLKDR  182 (388)
T ss_dssp             CSSE--EEEEETTS
T ss_pred             cCCc--eEEEEcCC
Confidence            9999  45555444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=82.90  E-value=40  Score=33.60  Aligned_cols=106  Identities=6%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             ceEEc-CCCCE--EEEeCCC----CeEEEcC-CCeEEecCCC-CCcccEEEccCC-cEEEEeCCCccCCccccccccccc
Q 018705           98 GLTTT-KDGGV--ILCDNEK----GLLKVTE-EGVEAIVPDA-SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        98 gl~~d-~~G~L--~v~d~~~----gl~~~~~-~g~~~l~~~~-~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      +.+++ +||+.  |..+..+    .++.++. +|.+.+.... ....++++++|| .|+++.....             .
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~-------------~  244 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDET-------------L  244 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTT-------------C
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCC-------------C
Confidence            67889 99963  3344321    2666663 3312222211 224578899998 5666642100             0


Q ss_pred             CCceEEEEeCCCCe---EEEee-cCccccceEEEcCCCCEEEEEecce---eEEee
Q 018705          168 PYGQLRKYDPKLKE---TTVLH-EGFYFANGIALSKNEDFVVVCESWK---RYWLK  216 (351)
Q Consensus       168 ~~g~l~~~d~~~~~---~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~  216 (351)
                      ....|++++..+++   ..++. ....+-.++.+|+||++|+++....   .+++.
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEE
Confidence            01368888877653   22222 1112334678999999888765332   45543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=82.28  E-value=24  Score=30.57  Aligned_cols=104  Identities=8%  Similarity=-0.070  Sum_probs=54.7

Q ss_pred             CEEEEEEcCCCeEEEEeecC--CccccceEEcCCCCEEEEeCC-----C-------CeEEEcC-CC-eEEecCCC-CCcc
Q 018705           73 GWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNE-----K-------GLLKVTE-EG-VEAIVPDA-SFTN  135 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~d~~-----~-------gl~~~~~-~g-~~~l~~~~-~~~n  135 (351)
                      ..++++|+.++++.....+.  .+-. .-+.--++.||+....     .       .++++++ ++ .+.+.... ..-.
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNH-VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSE-EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccc-eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            56999999999886522221  2222 1222357788885431     1       1566775 44 44443221 1111


Q ss_pred             cEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       136 ~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      .-++.-++.||+--......         .......+++||+.+++.+.+.
T Consensus        92 ~~~~~~~~~lyv~GG~~~~~---------~~~~~~~~~~~d~~~~~W~~~~  133 (315)
T 4asc_A           92 FGLGEALNSIYVVGGREIKD---------GERCLDSVMCYDRLSFKWGESD  133 (315)
T ss_dssp             CEEEEETTEEEEECCEESST---------TCCBCCCEEEEETTTTEEEECC
T ss_pred             eeEEEECCEEEEEeCCcCCC---------CCcccceEEEECCCCCcEeECC
Confidence            22223367888765421000         0112356999999988877654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.08  E-value=2.2  Score=38.53  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCEEEEEEcCCCeEE
Q 018705           62 SKGALYTATRDGWVKYFILHNETLV   86 (351)
Q Consensus        62 ~~g~lyv~~~~g~I~~~d~~~g~~~   86 (351)
                      .++.+|++..+|+++.+|..+|+..
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEE
Confidence            4789999999999999999999774

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=80.58  E-value=27  Score=30.11  Aligned_cols=101  Identities=14%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CEEEEEEcCCCeEEEEeecCC-ccccceEEcCCCCEEEEeCC----------CCeEEEcC-CC-eEEecCCC-CCcccEE
Q 018705           73 GWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNE----------KGLLKVTE-EG-VEAIVPDA-SFTNDVI  138 (351)
Q Consensus        73 g~I~~~d~~~g~~~~~~~~~~-~p~~gl~~d~~G~L~v~d~~----------~gl~~~~~-~g-~~~l~~~~-~~~n~l~  138 (351)
                      ..++++|+.+++++....... +-..+++. -++.||+....          ..+++++. +. .+.+.... ......+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            458999998888876643221 11102222 36788886432          24677775 44 45443221 2222223


Q ss_pred             EccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       139 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      +.-+|.||+--....            ......+++||+.+++.+.+.
T Consensus       118 ~~~~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~  153 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHG------------CIHHNSVERYEPERDEWHLVA  153 (308)
T ss_dssp             EEETTEEEEECCEET------------TEECCCEEEEETTTTEEEECC
T ss_pred             EEECCEEEEEcCCCC------------CcccccEEEECCCCCeEeECC
Confidence            334778887643210            011246999999988877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	4e-31
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-05

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  118 bits (296), Expect = 4e-31
 Identities = 59/359 (16%), Positives = 113/359 (31%), Gaps = 64/359 (17%)

Query: 19  FFSLSVSSLASLLSISKESSSMKGLT-KLGEGCVNHPEDVSVVVSKGALYTATRDGW--- 74
            F    SS  +  ++ +E + ++     L +G  N  ED+  ++  G  + ++   +   
Sbjct: 1   LFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDL-EILPNGLAFISSGLKYPGI 59

Query: 75  --------VKYFILHNETL--------VNWKHIDSQSL----LGLTTTKDG-GVILCDNE 113
                    K  ++             +    +D  S     +      D    +L  N 
Sbjct: 60  MSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 119

Query: 114 KG------LLKVTEEGVEAI------VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK 161
            G      + K  EE    +             ND++A      Y T       P     
Sbjct: 120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW 179

Query: 162 DMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKG 217
           +M  G  +  +  Y P   +  V+ EGF FANGI +S +  +V + E        Y    
Sbjct: 180 EMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237

Query: 218 DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI 277
           +        + +     DNI++ P                        +    DA     
Sbjct: 238 NWTLTPLRVL-SFDTLVDNISVDPVTGDLWV----------GCHPNGMRIFFYDAENPPG 286

Query: 278 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI 336
           S +L        R+  +   + K+   + + + T +   T AA + G L + ++    +
Sbjct: 287 SEVL--------RIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 30/245 (12%), Positives = 63/245 (25%), Gaps = 35/245 (14%)

Query: 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183
           +    P  +F  ++ +A DGT++ T                     G++    P      
Sbjct: 20  IITSFPVNTFLENLASAPDGTIFVT-----------------NHEVGEIVSITPD-GNQQ 61

Query: 184 VLHEGFYFANGIALSKNEDFVVVC-ESWKRYWLKGDRAGILDAFIENLPGG--PDNINLA 240
           +        +G+A + N D V     +     +   ++      +  LP     + I   
Sbjct: 62  IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL 121

Query: 241 PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS----LLLPMGSDAGARVVKVDG 296
            D  +           +  + +      L        +         G       + V  
Sbjct: 122 SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN 181

Query: 297 NDGKIIRDFNDPDATYISFVTSAAEF----------DGNLYLASLQSNFIGILPLDGPEP 346
            +  ++                  E           +GNLY A+   N +  +  D    
Sbjct: 182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT 241

Query: 347 QLATI 351
            +A  
Sbjct: 242 IIAQA 246

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.86
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.76
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.74
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.29
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.15
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.06
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.04
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.88
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.78
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.71
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.66
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.66
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.63
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.62
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.6
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.53
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.5
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.48
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.4
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.39
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.37
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.33
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.27
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.24
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.22
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.16
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.04
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.01
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.0
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.89
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.79
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.67
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.54
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.33
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.33
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.28
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.24
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.46
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.33
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.93
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.32
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.07
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.11
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	93.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.58
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.23
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.04
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	88.67
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.15
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.89

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=5e-27  Score=213.66  Aligned_cols=258  Identities=18%  Similarity=0.260  Sum_probs=186.7

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEc--------CCEEEEEEcCCCeEEEEee-----cCCccccceEEcCCCC-E
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATR--------DGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKDGG-V  107 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~--------~g~I~~~d~~~g~~~~~~~-----~~~~p~~gl~~d~~G~-L  107 (351)
                      ..+++.++ +.+||++++| .+|++|+...        +|+|+++|+.+++...+..     ..+.|. ||+++++|+ |
T Consensus         9 ~~~~v~~~-~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l   85 (314)
T d1pjxa_           9 LFTKVTED-IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQL   85 (314)
T ss_dssp             CCEEEECC-CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEE
T ss_pred             ceEEeecC-CCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEE
Confidence            34677777 8999999999 5777887542        5789999998887665532     235699 999999985 8


Q ss_pred             EEEeCCCCeEEEcCCC-eEEec-CC-----CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705          108 ILCDNEKGLLKVTEEG-VEAIV-PD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (351)
Q Consensus       108 ~v~d~~~gl~~~~~~g-~~~l~-~~-----~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  180 (351)
                      |+++..+++++++++| ...+. ..     ...||++++|++|+||||++.........  ........|+||+++++ +
T Consensus        86 ~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~--~~~~~~~~G~v~~~~~d-g  162 (314)
T d1pjxa_          86 FVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-S
T ss_pred             EEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccc--cceeccCCceEEEEeec-C
Confidence            9999888999999877 54432 21     15799999999999999997643322111  11122456899999987 5


Q ss_pred             eEEEeecCccccceEEEcCCCC----EEEEEecce----eEEeecC-CCCceeEEec---cCCCCCCceEECCCCCEEEE
Q 018705          181 ETTVLHEGFYFANGIALSKNED----FVVVCESWK----RYWLKGD-RAGILDAFIE---NLPGGPDNINLAPDGSFWIG  248 (351)
Q Consensus       181 ~~~~~~~~~~~~ngi~~~~dg~----~lyv~~~~~----~~~i~~~-~~~~~~~~~~---~~~g~pd~i~~d~~G~lwva  248 (351)
                      +...+...+..||||+++++++    .||++++..    +|++... .....+.+..   ...+.|||+++|++|+|||+
T Consensus       163 ~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence            6777778889999999998875    799999876    4555432 2223344432   12346899999999999999


Q ss_pred             EecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC--CEE
Q 018705          249 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD--GNL  326 (351)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~--g~L  326 (351)
                      ....                                    +.|.+|||+.|+....+..|.    ..+++++..+  .+|
T Consensus       243 ~~~~------------------------------------g~I~~~dp~~g~~~~~i~~p~----~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         243 NWGS------------------------------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EETT------------------------------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEE
T ss_pred             EcCC------------------------------------CEEEEEeCCCCEEEEEEECCC----CCEEEEEEeCCCCEE
Confidence            7642                                    469999993355556676553    2467777653  479


Q ss_pred             EEEecCCCeEEEEeCCCCC
Q 018705          327 YLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       327 ~ig~~~~~~i~~~~~~~~~  345 (351)
                      ||++..+++|.+++++...
T Consensus       283 yVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         283 FVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEETTTTEEEEEECSSCB
T ss_pred             EEEECCCCcEEEEECCCCC
Confidence            9999999999999976653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=1.4e-23  Score=191.01  Aligned_cols=242  Identities=21%  Similarity=0.281  Sum_probs=171.3

Q ss_pred             CCCceEEEeeCCCeEE-EEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCC-----CCeEEEcCCC-
Q 018705           52 NHPEDVSVVVSKGALY-TATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNE-----KGLLKVTEEG-  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~ly-v~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~-----~gl~~~~~~g-  123 (351)
                      ...|++++|++ |+|| ++..+|+|+|+++++++... +......|. ||+++++|+|||++..     .+++.++.++ 
T Consensus        40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34699999954 5555 56678999999997665544 345557899 9999999999999753     2467777543 


Q ss_pred             -eEEecCC---CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcC
Q 018705          124 -VEAIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (351)
Q Consensus       124 -~~~l~~~---~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~  199 (351)
                       ...+...   ...||+++++++|++|+++....           .....+.+++++++++.++.+..++..||||++++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence             4444332   27899999999999999987421           01235789999998778888888889999999999


Q ss_pred             CCCEEEEEecce----eEEeecC-CCCce---e-EEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHH
Q 018705          200 NEDFVVVCESWK----RYWLKGD-RAGIL---D-AFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  270 (351)
Q Consensus       200 dg~~lyv~~~~~----~~~i~~~-~~~~~---~-~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~  270 (351)
                      |++.||++++..    +|.+... .....   . .......+.|||+++|++|+|||+....                  
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~------------------  248 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------------------  248 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------------------
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC------------------
Confidence            999999999876    4444422 11111   1 1111223459999999999999998642                  


Q ss_pred             HhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCc--ccceeEEEEEC--CEEEEEec-----CCCeEEEEeC
Q 018705          271 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY--ISFVTSAAEFD--GNLYLASL-----QSNFIGILPL  341 (351)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~--~~~~~~~~~~~--g~L~ig~~-----~~~~i~~~~~  341 (351)
                                        +.|.+||| +|+.+..+.-|....  ...++++...+  ..||+.+.     .+..|++++.
T Consensus       249 ------------------g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         249 ------------------GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             ------------------TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             ------------------CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence                              47999999 999999998765311  22455666543  56777753     2356777775


Q ss_pred             CC
Q 018705          342 DG  343 (351)
Q Consensus       342 ~~  343 (351)
                      ..
T Consensus       310 ~~  311 (319)
T d2dg1a1         310 FA  311 (319)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.93  E-value=9e-24  Score=190.23  Aligned_cols=243  Identities=17%  Similarity=0.183  Sum_probs=182.2

Q ss_pred             eEecCCCcCCCceEEEeeCCCeE-EEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGAL-YTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~l-yv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-  121 (351)
                      +++..-+..-.|+..||++++.| |++...++|+++|+++++.+.+.. ...|. +++.+++|+||++.. +|++++++ 
T Consensus        10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~   86 (295)
T d2ghsa1          10 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIASD-DGLFLRDTA   86 (295)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEET-TEEEEEETT
T ss_pred             EEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-CCCcE-EEEEecCCCEEEEEe-CccEEeecc
Confidence            34444434445999999766755 677789999999998888876643 45677 899999999999975 68999996 


Q ss_pred             CC-eEEecCCC-----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceE
Q 018705          122 EG-VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI  195 (351)
Q Consensus       122 ~g-~~~l~~~~-----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi  195 (351)
                      +| .+.+....     +.+|++.+|++|++|++++....           ....+.+++++.  ++++.+...+..|||+
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-----------~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~  153 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-----------ETGAGSIYHVAK--GKVTKLFADISIPNSI  153 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-----------CTTCEEEEEEET--TEEEEEEEEESSEEEE
T ss_pred             cceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc-----------cccceeEeeecC--CcEEEEeeccCCccee
Confidence            66 66665421     67999999999999999864110           122456777764  6777778888999999


Q ss_pred             EEcCCCCEEEEEecce----eEEeecC---CCCceeEEec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhH
Q 018705          196 ALSKNEDFVVVCESWK----RYWLKGD---RAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREK  266 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~----~~~i~~~---~~~~~~~~~~--~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~  266 (351)
                      +++++++.+|++++..    +|.++..   ..++...+.+  ...+.|||+++|++|+||+|....              
T Consensus       154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~--------------  219 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--------------  219 (295)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--------------
T ss_pred             eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC--------------
Confidence            9999999999999866    3444321   1233344443  345679999999999999998652              


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEEC---CEEEEEecC-----------
Q 018705          267 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQ-----------  332 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~ig~~~-----------  332 (351)
                                            +.|.+||| +|+.+..+.-|.    ..+|++++.+   ++|||+|..           
T Consensus       220 ----------------------g~V~~~dp-~G~~~~~i~lP~----~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~  272 (295)
T d2ghsa1         220 ----------------------GAVDRYDT-DGNHIARYEVPG----KQTTCPAFIGPDASRLLVTSAREHLDDDAITAN  272 (295)
T ss_dssp             ----------------------TEEEEECT-TCCEEEEEECSC----SBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHC
T ss_pred             ----------------------CceEEecC-CCcEeeEecCCC----CceEEEEEeCCCCCEEEEEECCcCCChhHhccC
Confidence                                  47999999 999999998764    2578888753   689999875           


Q ss_pred             --CCeEEEEeCCC
Q 018705          333 --SNFIGILPLDG  343 (351)
Q Consensus       333 --~~~i~~~~~~~  343 (351)
                        ++.|.++++..
T Consensus       273 p~~G~l~~~~~~~  285 (295)
T d2ghsa1         273 PQHGLTFELGIEV  285 (295)
T ss_dssp             TTTTCEEECSSCC
T ss_pred             CCCceEEEEcCCC
Confidence              35788777653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=2e-23  Score=191.10  Aligned_cols=272  Identities=20%  Similarity=0.311  Sum_probs=184.6

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEEc-------------CCEEEEEEcCCCe--EEEEeec-------CCcccc
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-------------DGWVKYFILHNET--LVNWKHI-------DSQSLL   97 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-------------~g~I~~~d~~~g~--~~~~~~~-------~~~p~~   97 (351)
                      +..++.+. +...+||+|+.+ .+|.+|+++.             .|+|+.+|.++.+  ...+...       .-.|+ 
T Consensus        24 ~~~C~~i~-g~~~G~EDi~~~-~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-  100 (340)
T d1v04a_          24 LPNCNLVK-GIDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-  100 (340)
T ss_dssp             CSSCEECT-TCCSCCCEEEEC-TTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-
T ss_pred             CCCceEcC-CCCCCcceEEEC-CCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-
Confidence            44566663 546799999999 5788887663             3889999975542  3222211       13688 


Q ss_pred             ceEE--cCCC--CEEEEeCCC-----CeEEEcCCC--eE---EecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccc
Q 018705           98 GLTT--TKDG--GVILCDNEK-----GLLKVTEEG--VE---AIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKD  162 (351)
Q Consensus        98 gl~~--d~~G--~L~v~d~~~-----gl~~~~~~g--~~---~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~  162 (351)
                      ||.+  +.+|  +|+|.++..     .++.++.++  .+   .+... ...||+|++..+|.+|+|+............+
T Consensus       101 Gi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e  180 (340)
T d1v04a_         101 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWE  180 (340)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHH
T ss_pred             ceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhh
Confidence            9876  4566  588888632     245555444  22   22233 27899999999999999986522111111123


Q ss_pred             cccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeEEeccCCCCCCceE
Q 018705          163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDAFIENLPGGPDNIN  238 (351)
Q Consensus       163 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~~~~~~~g~pd~i~  238 (351)
                      .+.+.+.+.++.||++  +.+.+.+++.+||||++++|+++|||+++..    +|++.+........+. .+++.|||+.
T Consensus       181 ~~~~~~~g~v~~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~  257 (340)
T d1v04a_         181 MHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNIS  257 (340)
T ss_dssp             HHTTCCCEEEEEECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEE
T ss_pred             HhhcCCceeEEEEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccE
Confidence            3446678889999874  5677788899999999999999999999887    5777654333333333 5889999999


Q ss_pred             ECC-CCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE---CCCCeEEEEEECCCCCccc
Q 018705          239 LAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD---GNDGKIIRDFNDPDATYIS  314 (351)
Q Consensus       239 ~d~-~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~g~~~~~~~~~~g~~~~  314 (351)
                      +|+ +|.+|++........+             ...+..         .....++++.   .+++++.+.|++ +|....
T Consensus       258 ~d~~~g~lwva~~p~~~~~~-------------~~~~~~---------~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~  314 (340)
T d1v04a_         258 VDPVTGDLWVGCHPNGMRIF-------------FYDAEN---------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQ  314 (340)
T ss_dssp             ECTTTCCEEEEEESCHHHHH-------------SCCTTS---------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSSC
T ss_pred             EecCCCEEEEEECCcccchh-------------hhcccC---------CCCceeEEEEeccCCCCeEEEEEeC-CCcEee
Confidence            995 7899999875322111             110110         1223566663   337888888877 466788


Q ss_pred             ceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          315 FVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       315 ~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                      .+|.+.+++|+||+|+...++| .|++
T Consensus       315 ~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         315 GSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             SEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             ceEEEEEECCEEEEEeeeCCce-EecC
Confidence            8899999999999999988877 6875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=6.1e-20  Score=161.67  Aligned_cols=233  Identities=17%  Similarity=0.157  Sum_probs=163.5

Q ss_pred             cCCCceEEEeeCCCeEEEEE--cCCEEEEEEcCCCeEEEEe-ecCCccccceEEcCCCCEEEEeCCCCeEEEcCCC--eE
Q 018705           51 VNHPEDVSVVVSKGALYTAT--RDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~~--~~g~I~~~d~~~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~~g--~~  125 (351)
                      ..+|.+|++| .+|++|+..  ..++|.+++..+.....+. .....|. ++++|++|+||+++...+++++..++  ..
T Consensus        13 ~~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          13 RLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CCCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             cCCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4689999999 678888754  3578888876333222222 2235799 99999999999999988888887644  44


Q ss_pred             EecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe-ecCccccceEEEcCCCCE
Q 018705          126 AIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDF  203 (351)
Q Consensus       126 ~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~ngi~~~~dg~~  203 (351)
                      ..... ...|++++++++|++|+++..                 ..+++++++.+...... ..++..|+||+++++++ 
T Consensus        91 ~~~~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-  152 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-  152 (260)
T ss_dssp             ECCCCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-
T ss_pred             eeeeeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-
Confidence            33322 378999999999999999864                 35788888775554443 35578899999999998 


Q ss_pred             EEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          204 VVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      +|+++..+ ++..-+........+.....+.|.++++|++|+||++....                              
T Consensus       153 ~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~------------------------------  202 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------------------------------  202 (260)
T ss_dssp             EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT------------------------------
T ss_pred             EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCC------------------------------
Confidence            89998776 44433322222223322223468999999999999997542                              


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                            +.++++++ +++....+.. .+  ...+++++.+ +|.||++...+++|.++....
T Consensus       203 ------~~i~~~~~-~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         203 ------NQVVKLLA-GSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             ------TEEEEECT-TCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ------CEEEEEeC-CCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence                  36899999 7765444422 22  3456777765 579999999999999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.85  E-value=4.6e-19  Score=159.39  Aligned_cols=224  Identities=18%  Similarity=0.222  Sum_probs=157.9

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCC-CeEEEc-
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-  120 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~-gl~~~~-  120 (351)
                      ..++.+  ..+|++++++ +|+||++. .+++|+++++ +|+.+.+....+.|. +++++++|+||+++... .+.+++ 
T Consensus        22 ~~~p~~--~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p-~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          22 TSFPVN--TFLENLASAP-DGTIFVTNHEVGEIVSITP-DGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEECTT--CCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EECCCC--CCcCCEEECC-CCCEEEEeCCCCEEEEEeC-CCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEe
Confidence            344444  3589999995 56677655 5889999998 677777777778899 99999999999998654 345554 


Q ss_pred             -C-CC-eEEecC--CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--------
Q 018705          121 -E-EG-VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--------  187 (351)
Q Consensus       121 -~-~g-~~~l~~--~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------  187 (351)
                       . ++ .+.+..  ....+|+++++++|++|++++.                 .+.++++++.++.......        
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceee
Confidence             2 45 444433  2378999999999999999875                 4689999988776655432        


Q ss_pred             ---CccccceEEEcCCCCEEEEEecce----eEEeecC-CCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhh
Q 018705          188 ---GFYFANGIALSKNEDFVVVCESWK----RYWLKGD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRA  259 (351)
Q Consensus       188 ---~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~-~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~  259 (351)
                         ....+|||.++.  +.+|++++..    ++++... .....+.+.+  ...||++++|++|+||++....       
T Consensus       160 ~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l~va~~~~-------  228 (302)
T d2p4oa1         160 SESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIY-------  228 (302)
T ss_dssp             TTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTT-------
T ss_pred             ccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCEEEEEcCC-------
Confidence               134678887764  4699998876    3333322 1222233332  2469999999999999997542       


Q ss_pred             hhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-----CCEEEEEecC
Q 018705          260 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-----DGNLYLASLQ  332 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-----~g~L~ig~~~  332 (351)
                                                   +.|.+++| +|+.........+  ....+++.+.     ++.||+++..
T Consensus       229 -----------------------------~~V~~i~p-~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         229 -----------------------------NSVVRIAP-DRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----------------------------CCEEEECT-TCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----------------------------CcEEEECC-CCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCC
Confidence                                         35999999 9987666654433  4467777763     2579998753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=9e-16  Score=135.95  Aligned_cols=238  Identities=13%  Similarity=0.189  Sum_probs=164.3

Q ss_pred             CCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEE-EEeec------CCccccceEEcCC-CCEEEEe-CCC-CeE
Q 018705           49 GCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLV-NWKHI------DSQSLLGLTTTKD-GGVILCD-NEK-GLL  117 (351)
Q Consensus        49 ~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~-~~~~~------~~~p~~gl~~d~~-G~L~v~d-~~~-gl~  117 (351)
                      |++..|.+|++| .+|++||+. .+++|.++|+ +|++. .+...      ...|. +++++.+ +..+++. ... .+.
T Consensus        20 g~f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          20 GQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             TCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEE
T ss_pred             CeECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccc-cccccccccccceeccCCccccc
Confidence            568899999999 567788865 5789999998 56543 33221      12477 7877654 4555543 333 455


Q ss_pred             EEcCCC--eEEecCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCcccc
Q 018705          118 KVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFA  192 (351)
Q Consensus       118 ~~~~~g--~~~l~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~  192 (351)
                      .++++|  ...+... ...|.+++++++|++|+++..                 .+++.+++++...+..+.  ..+..|
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred             cccccccceeecCCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeeccccccccccc
Confidence            555677  4444333 378999999999999999875                 357889998754444432  346789


Q ss_pred             ceEEEcCCCCEEEEEecce-eEEeecCCCCc-eeEEec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHH
Q 018705          193 NGIALSKNEDFVVVCESWK-RYWLKGDRAGI-LDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  269 (351)
Q Consensus       193 ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~-~~~~~~-~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~  269 (351)
                      .+|+++++++ +|+++... ++++-+.. ++ ...+.. .....|.++++|++|++||+....                 
T Consensus       160 ~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-----------------  220 (279)
T d1q7fa_         160 NGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-----------------  220 (279)
T ss_dssp             EEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-----------------
T ss_pred             ceeeecccee-EEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCC-----------------
Confidence            9999999986 99998876 55443322 22 222321 223368999999999999996431                 


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeCCCCCCC
Q 018705          270 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEPQ  347 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~~~~~~~  347 (351)
                                        ...|.+|++ +|+.+.++..+..  ....+.++.. +|+||+.+. +++|.+|+.-..+|-
T Consensus       221 ------------------~~~v~~f~~-~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~~-n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         221 ------------------NFNLTIFTQ-DGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQLAPV  277 (279)
T ss_dssp             ------------------SCEEEEECT-TSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSCCCCT
T ss_pred             ------------------CcEEEEECC-CCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEeC-CCeEEEEEeeeecCC
Confidence                              235888999 9998888864322  2346666654 689999985 789999999888873

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.6e-16  Score=139.36  Aligned_cols=184  Identities=14%  Similarity=0.147  Sum_probs=129.8

Q ss_pred             CCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCC-eEEEcCCC--
Q 018705           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--  123 (351)
Q Consensus        48 ~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~~g--  123 (351)
                      .+.+..|++++++ .++.+|++...+.+.++...+.....+.. ....|. ++++|++|++|+++.... +++++..+  
T Consensus        53 ~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~  130 (260)
T d1rwia_          53 FNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKT  130 (260)
T ss_dssp             CCSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSS
T ss_pred             cCCccCceEEEEc-CCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccce
Confidence            3446789999999 57788998887777777653333323222 235689 999999999999986654 55666544  


Q ss_pred             eEEec-CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCC
Q 018705          124 VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (351)
Q Consensus       124 ~~~l~-~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg  201 (351)
                      ..... .....|++|+++++|++|+++..                 .++++++++++.....+. ..+..|+||+++++|
T Consensus       131 ~~~~~~~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g  193 (260)
T d1rwia_         131 QTVLPFTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG  193 (260)
T ss_dssp             CEECCCCSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred             eeeeeecccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeeeee
Confidence            33332 23478999999999999999875                 468999998865555443 567889999999999


Q ss_pred             CEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEec
Q 018705          202 DFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       202 ~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      + ||+++..+ ++..-.........+....-..|.+|++|++|+|||+...
T Consensus       194 ~-l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         194 T-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             C-EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             e-eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            7 99999876 4332222222223332222236899999999999999654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.65  E-value=5.5e-15  Score=133.22  Aligned_cols=179  Identities=14%  Similarity=0.133  Sum_probs=125.7

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cC----CccccceEEcCCCCEEEEeCCC-------------
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-ID----SQSLLGLTTTKDGGVILCDNEK-------------  114 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~----~~p~~gl~~d~~G~L~v~d~~~-------------  114 (351)
                      .|.+++++++++.+|++...++|++++++++..+.... ..    ..|+ .+++|++|+||+++...             
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pn-dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCc-EEEECCCCCEEEecCccCcccccccceecc
Confidence            48899999777789999888889999995444333221 11    2478 89999999999998531             


Q ss_pred             ---CeEEEcCCC-eEEecCCCCCcccEEEccCC-----cEEEEeCCCccCCcccccccccccCCceEEEEeCC-CCeEE-
Q 018705          115 ---GLLKVTEEG-VEAIVPDASFTNDVIAASDG-----TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETT-  183 (351)
Q Consensus       115 ---gl~~~~~~g-~~~l~~~~~~~n~l~~d~dG-----~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~-  183 (351)
                         .+++++++| ...+......||++++++++     .||++++.                 .++|++|+.. .+.+. 
T Consensus       151 ~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~-----------------~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEETTEEEE
T ss_pred             CCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec-----------------ccceEEeeccCccccce
Confidence               477888877 55555555789999998875     49999976                 4689888632 23332 


Q ss_pred             --Eee----cCccccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCC-CCCCceEECCCCC-EEEEEec
Q 018705          184 --VLH----EGFYFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP-GGPDNINLAPDGS-FWIGLIK  251 (351)
Q Consensus       184 --~~~----~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~-g~pd~i~~d~~G~-lwva~~~  251 (351)
                        .+.    .....|+||+++++|+ ||+++... +++.-++..+...... ..| ..|.+++++++|+ |||+...
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i-~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEEEE-ECCCCCEEEEEEeCCCCEEEEEECC
Confidence              121    1234699999999998 99998765 6655554444433222 123 2578899999985 9998753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1e-12  Score=115.09  Aligned_cols=200  Identities=11%  Similarity=0.081  Sum_probs=141.6

Q ss_pred             CCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEeec-CCccccceEEcC-CCCEEEEeCCC-CeEEEcCCC--eEE
Q 018705           53 HPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--VEA  126 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~~-~~~p~~gl~~d~-~G~L~v~d~~~-gl~~~~~~g--~~~  126 (351)
                      .+.+|++|..++.+|. ....+.|++.+..++..+.+... ...|. +|++|. .++||+++... .+.+.+.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            3567899987787765 45678899999865555555433 35799 999995 66899999765 455556666  455


Q ss_pred             ec-CCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccceEEEcCCCCE
Q 018705          127 IV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       127 l~-~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~dg~~  203 (351)
                      +. .....|.++++|| .|.+|+++...               ...+|++.++++...+ .+..++..|+||++++.++.
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~  180 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCceeeeeecccccceEEEeecCcE
Confidence            44 3347899999998 56899998641               1357999988754433 34467889999999998889


Q ss_pred             EEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccC
Q 018705          204 VVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  282 (351)
Q Consensus       204 lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
                      ||+++... ++...+......+....+++ .|.+++++ +++||++...                               
T Consensus       181 lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~-------------------------------  227 (263)
T d1npea_         181 LCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWK-------------------------------  227 (263)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETT-------------------------------
T ss_pred             EEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECC-------------------------------
Confidence            99999766 55444332233344444443 57899998 5789998643                               


Q ss_pred             CCCCCceEEEEEECCCCeEEEEEE
Q 018705          283 MGSDAGARVVKVDGNDGKIIRDFN  306 (351)
Q Consensus       283 ~~~~~~~~v~~~~~~~g~~~~~~~  306 (351)
                           ...|.++|.++|+.+..+.
T Consensus       228 -----~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         228 -----TNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             -----TTEEEEEETTTTEEEEEEC
T ss_pred             -----CCEEEEEECCCCccceEEC
Confidence                 1369999996788777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=7.1e-13  Score=119.35  Aligned_cols=192  Identities=17%  Similarity=0.228  Sum_probs=129.0

Q ss_pred             ceEEcCCCCEEEEeCCC-CeEEEcCCC---eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEE
Q 018705           98 GLTTTKDGGVILCDNEK-GLLKVTEEG---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~-gl~~~~~~g---~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~  173 (351)
                      |+++|++|+||++|... .++++++++   ...+......|+++++++||++|+++....             ...+.++
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~-------------~~~~~i~  110 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF-------------KSTGGIF  110 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS-------------SSCCEEE
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC-------------ccceeEE
Confidence            99999999999999665 588888755   333444447899999999999999975411             1245799


Q ss_pred             EEeCCCCeEEEeec---CccccceEEEcCCCCEEEEEecce-------eEEeecCCCCceeEEeccCCCCCCceEECCCC
Q 018705          174 KYDPKLKETTVLHE---GFYFANGIALSKNEDFVVVCESWK-------RYWLKGDRAGILDAFIENLPGGPDNINLAPDG  243 (351)
Q Consensus       174 ~~d~~~~~~~~~~~---~~~~~ngi~~~~dg~~lyv~~~~~-------~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G  243 (351)
                      .+++++++......   ....||.++++++|+ +|+++...       .++..+...+..+.+.+.+. .|+|+++|++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~-~pnGia~s~dg  188 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-VANGIALSTDE  188 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-SEEEEEECTTS
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccc-eeeeeeecccc
Confidence            99988777665543   345799999999998 99998653       23322232333444443333 58999999999


Q ss_pred             C-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEE--CCCCeEEE----EE-ECCCCCcccc
Q 018705          244 S-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD--GNDGKIIR----DF-NDPDATYISF  315 (351)
Q Consensus       244 ~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~g~~~~----~~-~~~~g~~~~~  315 (351)
                      + ||++....                                    ..|.+|+  . +|....    .. ....+  ...
T Consensus       189 ~~lyvad~~~------------------------------------~~I~~~d~~~-~g~~~~~~~~~~~~~~~~--~~~  229 (319)
T d2dg1a1         189 KVLWVTETTA------------------------------------NRLHRIALED-DGVTIQPFGATIPYYFTG--HEG  229 (319)
T ss_dssp             SEEEEEEGGG------------------------------------TEEEEEEECT-TSSSEEEEEEEEEEECCS--SSE
T ss_pred             ceEEEecccC------------------------------------CceEEEEEcC-CCceeccccceeeeccCC--ccc
Confidence            6 99997542                                    2455554  3 443221    11 11111  123


Q ss_pred             eeEEEEE-CCEEEEEecCCCeEEEEeCCC
Q 018705          316 VTSAAEF-DGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       316 ~~~~~~~-~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      ...++.+ +|+||++...++.|.+++..+
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             eeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            4556654 689999999999999998554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=6.8e-13  Score=117.04  Aligned_cols=181  Identities=13%  Similarity=0.208  Sum_probs=128.2

Q ss_pred             CcCCCceEEEeeCCCeEEEEE--cCCEEEEEEcCCCeE-EEEee-cCCccccceEEcCCCCEEEEeCCCC-eEEEcCCC-
Q 018705           50 CVNHPEDVSVVVSKGALYTAT--RDGWVKYFILHNETL-VNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG-  123 (351)
Q Consensus        50 ~~~~pe~i~~d~~~g~lyv~~--~~g~I~~~d~~~g~~-~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~~g-  123 (351)
                      ....|.+++++.+.+..++..  .+++|.+++. +|+. ..+.. ....|. ++++|++|++|+++.... +..++++| 
T Consensus        68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g~  145 (279)
T d1q7fa_          68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGN  145 (279)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             cccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCCc
Confidence            355788898875666665533  4568888887 5554 33322 235688 999999999999987754 66667777 


Q ss_pred             -eEEecCC--CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEc
Q 018705          124 -VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALS  198 (351)
Q Consensus       124 -~~~l~~~--~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~  198 (351)
                       +..+...  ...|.+++++++|++|+++..                 .++|++||+++..+..+.  ..+..|.||+++
T Consensus       146 ~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD  208 (279)
T d1q7fa_         146 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGIN  208 (279)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEEC
T ss_pred             eeecccccccccccceeeeccceeEEeeecc-----------------ccceeeeecCCceeeeecccccccCCcccccc
Confidence             4554322  378999999999999999875                 468999998755444443  246789999999


Q ss_pred             CCCCEEEEEecce--eEEeecCCCCce-eEEecc-CCCCCCceEECCCCCEEEEEec
Q 018705          199 KNEDFVVVCESWK--RYWLKGDRAGIL-DAFIEN-LPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       199 ~dg~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~-~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++|+ +||++..+  ++.+.+. .|+. ..+... ....|.+++++++|+|||+...
T Consensus       209 ~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n  263 (279)
T d1q7fa_         209 SNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKD  263 (279)
T ss_dssp             TTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             cCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCC
Confidence            9998 99998754  6666543 3442 223222 2236889999999999998643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.52  E-value=3.7e-11  Score=104.72  Aligned_cols=241  Identities=15%  Similarity=0.142  Sum_probs=163.0

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT  120 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~  120 (351)
                      .+.+..+  ..|.+++++|++..+|++. .+++|..||..+++..........|. +++++++|. ++++........+.
T Consensus        25 ~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
T d1l0qa2          25 TATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVI  101 (301)
T ss_dssp             EEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeec
Confidence            3445554  4689999998778888765 57899999998887654444556788 999999996 56666555555554


Q ss_pred             -C-CC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceE
Q 018705          121 -E-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI  195 (351)
Q Consensus       121 -~-~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi  195 (351)
                       . ++  ...+.. ...+..+++++||. ++++...                 .+.+..++..+++..........|..+
T Consensus       102 ~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (301)
T d1l0qa2         102 DTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGI  163 (301)
T ss_dssp             ETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             ccccceeeeeccc-cccceEEEeecCCCeeeeeecc-----------------ccceeeeeccccceeeecccCCCceEE
Confidence             3 44  333332 25788899999996 4555443                 346788888877766555666778999


Q ss_pred             EEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhc
Q 018705          196 ALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAY  273 (351)
Q Consensus       196 ~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      +++++++.+|++.... ...+............ .....|.+++++++|+ +|++...                      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~----------------------  220 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVD----------------------  220 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEEC----------------------
T ss_pred             Eeeccccceeeecccccccccccccceeeeecc-cccCCcceeecccccccccccccc----------------------
Confidence            9999999899987665 3332222222221111 2234578889999996 6666543                      


Q ss_pred             cchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 018705          274 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       274 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                  ...+.|..+|..+++.+..+....     .+..+...  +.+||++....+.|.++++.+-
T Consensus       221 ------------~~~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         221 ------------KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             ------------SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ------------ceeeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence                        122468888987788888776422     35666654  4579999888899999998654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-11  Score=105.62  Aligned_cols=222  Identities=13%  Similarity=0.102  Sum_probs=149.7

Q ss_pred             EEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcC-CCCEEEEeCCCC-eEEEcCCC------eEE-ecCCCCCccc
Q 018705           66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG------VEA-IVPDASFTND  136 (351)
Q Consensus        66 lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~-~G~L~v~d~~~g-l~~~~~~g------~~~-l~~~~~~~n~  136 (351)
                      |+.+... .|.+++.++.....+.....++. +|.+|. ++.||++|...+ +++.+.++      .+. +......|.+
T Consensus         4 Ll~s~~~-~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           4 LFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEECBS-SEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEECCC-eEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            3344433 49999987766666555556788 999995 567999997655 55554322      223 3344478999


Q ss_pred             EEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEEEecce--e
Q 018705          137 VIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK--R  212 (351)
Q Consensus       137 l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv~~~~~--~  212 (351)
                      |++|. .++||+++..                 .++|.+++.++...+. +......|.+|+++|....||+++.+.  +
T Consensus        82 lAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~  144 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK  144 (266)
T ss_dssp             EEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcc
Confidence            99997 5689999975                 4579999887655444 455678899999999777899998665  4


Q ss_pred             EEeecCCCCceeEEeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEE
Q 018705          213 YWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  291 (351)
Q Consensus       213 ~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  291 (351)
                      +..........+.+....-..|.++++|..+ +||.+...                                    .+.|
T Consensus       145 I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~------------------------------------~~~I  188 (266)
T d1ijqa1         145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------------LHSI  188 (266)
T ss_dssp             EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------------TTEE
T ss_pred             eeEeccCCCceecccccccceeeEEEeeccccEEEEecCC------------------------------------cCEE
Confidence            4333222222333433222468999999765 58887543                                    1368


Q ss_pred             EEEECCCCeEEEEE-ECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          292 VKVDGNDGKIIRDF-NDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       292 ~~~~~~~g~~~~~~-~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                      .+++. +|.-...+ ....+  ...+.++...++.||++....+.|.+++..+-.
T Consensus       189 ~~~~~-dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         189 SSIDV-NGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEET-TSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEC-CCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEECCCCc
Confidence            88898 88543333 33322  335667778899999999999999999866543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.8e-11  Score=104.84  Aligned_cols=214  Identities=13%  Similarity=0.106  Sum_probs=144.5

Q ss_pred             CCEEEEEEcCCCeEE------EEeecCCccccceEEc-CCCCEEEEeCCCC-eEEEcCCC--eEEec-CCCCCcccEEEc
Q 018705           72 DGWVKYFILHNETLV------NWKHIDSQSLLGLTTT-KDGGVILCDNEKG-LLKVTEEG--VEAIV-PDASFTNDVIAA  140 (351)
Q Consensus        72 ~g~I~~~d~~~g~~~------~~~~~~~~p~~gl~~d-~~G~L~v~d~~~g-l~~~~~~g--~~~l~-~~~~~~n~l~~d  140 (351)
                      .+.|.+++.+.....      ........+. +|++| .+++||++|...+ +++.+.+|  .+.+. .....|.+|++|
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEe
Confidence            357988887443221      1222334567 89999 4568999997765 56666554  44443 344789999999


Q ss_pred             c-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEEcCCCCEEEEEecce---eEEe
Q 018705          141 S-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK---RYWL  215 (351)
Q Consensus       141 ~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i  215 (351)
                      . .++||+++..                 .++|.++++++...+.+. .++..|.+|+++|....+|+++.+.   +++.
T Consensus        88 ~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          88 HLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             TTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            7 5689999865                 458999988765544443 5578899999999888999998764   4443


Q ss_pred             ecCCCCceeEEeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018705          216 KGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV  294 (351)
Q Consensus       216 ~~~~~~~~~~~~~~~~g~pd~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  294 (351)
                      .+......+.+....-..|.++++|..+ +||++...                                    .+.|.++
T Consensus       151 ~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~------------------------------------~~~I~~~  194 (263)
T d1npea_         151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG------------------------------------THRAECL  194 (263)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT------------------------------------TTEEEEE
T ss_pred             ecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC------------------------------------CCEEEEE
Confidence            3221122233332222368999999665 58887543                                    1368899


Q ss_pred             ECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          295 DGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       295 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                      +. +|...+.+-.  +.  ..+.++..++++||++....+.|.+++..+.
T Consensus       195 ~~-~g~~~~~v~~--~~--~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         195 NP-AQPGRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             ET-TEEEEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             EC-CCCCeEEEEC--CC--CCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            99 8876555432  22  2345777789999999999999999997643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-11  Score=105.21  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=123.2

Q ss_pred             cCCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCC----eEEE-EeecCCccccceEEcC-CCCEEEEeCCCCeE-EEcCC
Q 018705           51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNE----TLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLL-KVTEE  122 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g----~~~~-~~~~~~~p~~gl~~d~-~G~L~v~d~~~gl~-~~~~~  122 (351)
                      +..+.+|.+|..++.+|. ....+.|++.+.+..    ..+. .......|. ||++|. .++||+++...+.+ ..+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            567889999987887765 456788998876321    1222 223335788 999996 56899999876644 44456


Q ss_pred             C--eEE-ecCCCCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee-cCccccceEEE
Q 018705          123 G--VEA-IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (351)
Q Consensus       123 g--~~~-l~~~~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngi~~  197 (351)
                      |  .+. +......|.+|++|+ +|.+|+++...                .++|++.++++...+.+. ..+..|+||++
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~~dGs~~~~l~~~~~~~p~gl~i  171 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCC----------------CcceeEeccCCCceecccccccceeeEEEe
Confidence            6  333 333347899999998 67999998641                357999998865555544 56789999999


Q ss_pred             cCCCCEEEEEecce-eEEeecCCCCceeEEeccCC--CCCCceEECCCCCEEEEEec
Q 018705          198 SKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLP--GGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       198 ~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~--g~pd~i~~d~~G~lwva~~~  251 (351)
                      ++.++.||+++... ++...+......+.+.....  ..|.+++++ +++||++...
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~  227 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             eccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECC
Confidence            99888999999876 44433221122233322211  247789998 5789998643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.36  E-value=2.9e-11  Score=107.35  Aligned_cols=175  Identities=15%  Similarity=0.111  Sum_probs=120.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeec-----CCccccceEEcCCCCEEEEeCCC-------CeEEEc
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNEK-------GLLKVT  120 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~d~~~-------gl~~~~  120 (351)
                      .|.+++.+ ++|.+|+++.+ +|+++|+.+++++.+...     ..+++ .+.+|++|++|+++...       .++++.
T Consensus        60 ~~~~i~~~-~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          60 MGSALAKI-SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             CEEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcEEEEEe-cCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccce-eeEECCCCCEEEEeccccccccceeEeeec
Confidence            57789998 67899998875 599999999988876532     23578 89999999999997431       244443


Q ss_pred             CCC-eEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCC--C----CeEEEee---cCc
Q 018705          121 EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--L----KETTVLH---EGF  189 (351)
Q Consensus       121 ~~g-~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~----~~~~~~~---~~~  189 (351)
                       +| .+.+......+|++++++++ .+|++++.                 .+.|++|+.+  .    ++...+.   ...
T Consensus       137 -~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-----------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~  198 (295)
T d2ghsa1         137 -KGKVTKLFADISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK  198 (295)
T ss_dssp             -TTEEEEEEEEESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS
T ss_pred             -CCcEEEEeeccCCcceeeecCCCceEEEeecc-----------------cceeeEeeecccccccccceEEEeccCccc
Confidence             45 55555555789999999998 59999976                 4578887532  2    1222222   234


Q ss_pred             cccceEEEcCCCCEEEEEecce-eEEeecCCCCceeEEeccCCC-CCCceEEC-CCC-CEEEEEec
Q 018705          190 YFANGIALSKNEDFVVVCESWK-RYWLKGDRAGILDAFIENLPG-GPDNINLA-PDG-SFWIGLIK  251 (351)
Q Consensus       190 ~~~ngi~~~~dg~~lyv~~~~~-~~~i~~~~~~~~~~~~~~~~g-~pd~i~~d-~~G-~lwva~~~  251 (351)
                      ..|+|++++++|+ ||++.... ++..-++. |+....+ .+|. .|.++++. +++ .|||++..
T Consensus       199 g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~-G~~~~~i-~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         199 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SEEEEEEECTTSC-EEEEEETTTEEEEECTT-CCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ccccceEEcCCCC-EEeeeeCCCceEEecCC-CcEeeEe-cCCCCceEEEEEeCCCCCEEEEEECC
Confidence            5799999999998 99998665 55444332 3332222 2442 46778885 454 59999764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.29  E-value=1.6e-10  Score=102.65  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=109.6

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .++.++++++||+||+++..                 .++|++++++ ++.+.+......|+|+++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            57889999999999999975                 5689999997 56666666677899999999998 89987654


Q ss_pred             ----eEEeecCCCCceeEEecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705          212 ----RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  286 (351)
Q Consensus       212 ----~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
                          ++.... ..+....+.+. ....+.++++|++|++|++...                                   
T Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~-----------------------------------  132 (302)
T d2p4oa1          89 DSIPVVSLVK-SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----------------------------------  132 (302)
T ss_dssp             TSCEEEEEEC-TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----------------------------------
T ss_pred             ceEEEEEecc-cccceeeccccCCccccceeEEccCCCEEeeccc-----------------------------------
Confidence                333332 23444444331 1235788999999999998643                                   


Q ss_pred             CceEEEEEECCCCeEEEE-EECCCC------CcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          287 AGARVVKVDGNDGKIIRD-FNDPDA------TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~-~~~~~g------~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                       .+.+.++++ ++..... ..++..      ........+..+++.||++....+.|.+++....
T Consensus       133 -~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         133 -RGAIWLIDV-VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             -TTEEEEEET-TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTT
T ss_pred             -cccceeeec-cCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccc
Confidence             236788888 5433332 232211      1122334556678999999999999999997654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.15  E-value=4.8e-08  Score=84.33  Aligned_cols=166  Identities=15%  Similarity=0.205  Sum_probs=111.4

Q ss_pred             eEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eEEecCCCCCcccEE
Q 018705           65 ALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VEAIVPDASFTNDVI  138 (351)
Q Consensus        65 ~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~~l~~~~~~~n~l~  138 (351)
                      .+||+. .++.|..+|.+++++..-...+..|. +++++++|+ ||++....+ +..++. ++  +..+... ..|.+++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~   80 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-ccccccc
Confidence            467764 57899999999998765555667899 999999996 778876554 555553 55  4444433 5789999


Q ss_pred             EccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce-eEEee
Q 018705          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-RYWLK  216 (351)
Q Consensus       139 ~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~-~~~i~  216 (351)
                      ++++|. ++++...                 .+.+..++..+++..........+..+++++|++.++++.... .+.+.
T Consensus        81 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~  143 (301)
T d1l0qa2          81 VSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (301)
T ss_dssp             ECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccccccccccc-----------------cceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeee
Confidence            999986 5555543                 3468888888887666666667788999999999887776544 33322


Q ss_pred             cCCCCceeEEeccCCCCCCceEECCCCC-EEEEEe
Q 018705          217 GDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                      +........... ....|..+.++++++ +|++..
T Consensus       144 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         144 NTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             ETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEET
T ss_pred             eccccceeeecc-cCCCceEEEeeccccceeeecc
Confidence            222222221111 122466788888876 666643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=9.3e-08  Score=83.83  Aligned_cols=153  Identities=13%  Similarity=0.115  Sum_probs=95.3

Q ss_pred             CccCceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCC--CeEEEE--eecCCccccceEEcCCCC-EEEEeC
Q 018705           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHN--ETLVNW--KHIDSQSLLGLTTTKDGG-VILCDN  112 (351)
Q Consensus        39 ~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~--g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~d~  112 (351)
                      .|..++.+..+  ..|.+|+++|++..||++.. ++.|..|+...  ...+..  ......|. ++++++||+ ||+++.
T Consensus        26 ~l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          26 ALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CEEEEEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEET
T ss_pred             CeEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeeccc
Confidence            34445555554  46899999988888998876 78887776533  333322  33456788 999999996 788876


Q ss_pred             CCCeEEEc-C-CC--eEE--ecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-EE-
Q 018705          113 EKGLLKVT-E-EG--VEA--IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TT-  183 (351)
Q Consensus       113 ~~gl~~~~-~-~g--~~~--l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~-  183 (351)
                      ..+.+.+. . ..  ...  .......+.++++++||+ ++.++..                 ...+..|+..+.. .. 
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEE
T ss_pred             CCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCccee
Confidence            66555444 2 22  211  122226788999999996 5555533                 2345555533221 11 


Q ss_pred             E-----eecCccccceEEEcCCCCEEEEEecce
Q 018705          184 V-----LHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       184 ~-----~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .     .......|..+++++++..+|+.....
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~  198 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN  198 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeecccc
Confidence            1     112345678999999999888776544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.04  E-value=5.2e-07  Score=79.46  Aligned_cols=233  Identities=9%  Similarity=-0.005  Sum_probs=145.2

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE---EEEeecCCccccceEEcCCCCEEEEeCC--CCeEEEc--CCC-
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKDGGVILCDNE--KGLLKVT--EEG-  123 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~---~~~~~~~~~p~~gl~~d~~G~L~v~d~~--~gl~~~~--~~g-  123 (351)
                      ..-.++++.|++..+.++..||.|..||..+++.   ..+........ .++++++|+++++...  ....++.  +.+ 
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccccccc
Confidence            4457888998777888899999999999866532   22222334556 8999999986654432  2334443  334 


Q ss_pred             -eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCC
Q 018705          124 -VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKN  200 (351)
Q Consensus       124 -~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~d  200 (351)
                       ...+......+++++++++|. ++++.+.                 ++.|..||..+++....... -...+.++++|+
T Consensus       138 ~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~-----------------d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         138 SNGNLTGQARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccceeeeccccc-----------------ccccccccccccccccccccccccccccccCcc
Confidence             333333335688899999986 4554433                 46788999887766554433 334578999999


Q ss_pred             CCEEEEEecce--eEEeecCCCCceeEEec---cCCC---CCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHh
Q 018705          201 EDFVVVCESWK--RYWLKGDRAGILDAFIE---NLPG---GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDA  272 (351)
Q Consensus       201 g~~lyv~~~~~--~~~i~~~~~~~~~~~~~---~~~g---~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      ++.++.+...+  ++|-... ......+..   ...+   ....++++++|++.++...                     
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~---------------------  258 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA---------------------  258 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET---------------------
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccCCCCCEEEEEeC---------------------
Confidence            99777776655  4442211 111111211   1111   1234688899987666432                     


Q ss_pred             ccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeC
Q 018705          273 YPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~  341 (351)
                                     .+.|..+|.++++.+..+...... .....++...++.|+.++. .+.|..+++
T Consensus       259 ---------------Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~-dG~i~~wd~  310 (311)
T d1nr0a1         259 ---------------DKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISA-NGFINFVNP  310 (311)
T ss_dssp             ---------------TSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEET-TCCEEEEET
T ss_pred             ---------------CCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEEC-CCEEEEEeC
Confidence                           235777787789988888754322 2344556666778888876 677877775

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=4.6e-07  Score=79.03  Aligned_cols=140  Identities=10%  Similarity=-0.005  Sum_probs=95.0

Q ss_pred             eEEEEEcCCEEEEEEcCCCeEEEEee---cCCccccceEEcCCCC-EEEEeCCCC-eEEEc-CCC--eEEecCC-----C
Q 018705           65 ALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGG-VILCDNEKG-LLKVT-EEG--VEAIVPD-----A  131 (351)
Q Consensus        65 ~lyv~~~~g~I~~~d~~~g~~~~~~~---~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~-~~g--~~~l~~~-----~  131 (351)
                      .++++..+++|..||.++++......   .+..|. ++++++||+ ||++....+ +..++ .++  ...+...     .
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            56778889999999998887654322   245688 999999996 678765555 55555 356  3333221     1


Q ss_pred             CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705          132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       132 ~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      ..+.++++++||. +|++......      ...........+..+|..+++..........+.++++++||+++|++...
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC
Confidence            5788999999984 6666542110      00011123457888999888876655556778999999999988887644


Q ss_pred             e
Q 018705          211 K  211 (351)
Q Consensus       211 ~  211 (351)
                      .
T Consensus       156 ~  156 (337)
T d1pbyb_         156 L  156 (337)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-06  Score=76.15  Aligned_cols=227  Identities=11%  Similarity=0.015  Sum_probs=136.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEeecCCccccceEEcCCCCEEEEeCCCC-eEEEc-CCC--eEE
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEA  126 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~-~~g--~~~  126 (351)
                      -.++++.|++..|.++..+|.|..||....+.+   .+........ .+++++++.++++....+ +...+ .++  ...
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            358899977778888999999999997543322   2222223345 778889987766544444 44444 345  333


Q ss_pred             ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEE
Q 018705          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       127 l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      .......+++++++++|...++...                 ++.+..||..+++.............++++++++.+++
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccc-----------------cccccccccccceeecccccccceEEEEEcccccccce
Confidence            3322356788899999865555432                 46788999887765443333445678999999997777


Q ss_pred             EecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCC
Q 018705          207 CESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  286 (351)
Q Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
                      +..++.+.+-+...+...... ...+....++++++|++.++...                                   
T Consensus       242 ~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~v~~s~~g~~l~s~s~-----------------------------------  285 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVSTGK-----------------------------------  285 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred             ecccccccccccccccccccc-ccccccceEEECCCCCEEEEEeC-----------------------------------
Confidence            766662222222222221111 12223456788999987776543                                   


Q ss_pred             CceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEEecCCCeEEEEeC
Q 018705          287 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGILPL  341 (351)
Q Consensus       287 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig~~~~~~i~~~~~  341 (351)
                       .+.|..+|..+++.+..+.. .    ..++++... ++ .|..|+. .+.|..+++
T Consensus       286 -Dg~i~iwd~~~~~~~~~~~~-~----~~v~~~~~s~d~~~l~t~s~-D~~I~vWdl  335 (337)
T d1gxra_         286 -DNLLNAWRTPYGASIFQSKE-S----SSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             -TSEEEEEETTTCCEEEEEEC-S----SCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             -CCeEEEEECCCCCEEEEccC-C----CCEEEEEEeCCCCEEEEEeC-CCeEEEEEE
Confidence             13566778767777766642 2    246666654 34 4544443 566777664

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.91  E-value=2.5e-07  Score=80.08  Aligned_cols=207  Identities=14%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             cCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe-ec-CCccccceEEcCCCCEEEEeCCCCeEE
Q 018705           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HI-DSQSLLGLTTTKDGGVILCDNEKGLLK  118 (351)
Q Consensus        41 ~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~-~~-~~~p~~gl~~d~~G~L~v~d~~~gl~~  118 (351)
                      ..+.++..|.-..-.+++++|++..|+++..||.|..||..+++..... .. ..... .+++.++|+++++.....+..
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDLFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCEEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeeccceeecccceeeEEE
Confidence            3456677776666678999987778889999999999998887654332 22 23345 899999999998876655555


Q ss_pred             EcCCC--eEE---e-cCCCCCcccEEEccCCcEEEEeCCCc---cCCccc-----------------ccccccccCCceE
Q 018705          119 VTEEG--VEA---I-VPDASFTNDVIAASDGTLYFTVASTK---YTPTDF-----------------YKDMAEGKPYGQL  172 (351)
Q Consensus       119 ~~~~g--~~~---l-~~~~~~~n~l~~d~dG~ly~t~~~~~---~~~~~~-----------------~~~~~~~~~~g~l  172 (351)
                      ++..+  ...   . ......+.+++++++|.+.++.....   +.....                 ...+..+..+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44221  111   1 11114567788888886554432211   100000                 0112344556788


Q ss_pred             EEEeCCCCeEEEee--cCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCC---CCCceEECCCCCE
Q 018705          173 RKYDPKLKETTVLH--EGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPG---GPDNINLAPDGSF  245 (351)
Q Consensus       173 ~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g---~pd~i~~d~~G~l  245 (351)
                      ..||..+++.....  ..-.....++++++++.++.+..++  ++|-..  .+........+.+   ....++++++|.+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA--NNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG--GTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            88887766654322  2233467899999999777776665  444211  1111101111111   2244678899986


Q ss_pred             EEEEe
Q 018705          246 WIGLI  250 (351)
Q Consensus       246 wva~~  250 (351)
                      .++..
T Consensus       239 l~sgs  243 (299)
T d1nr0a2         239 LATGS  243 (299)
T ss_dssp             EEEEE
T ss_pred             eEEEc
Confidence            66543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.88  E-value=2.3e-06  Score=77.16  Aligned_cols=255  Identities=10%  Similarity=0.038  Sum_probs=137.8

Q ss_pred             cCccCceEecCCCcCCCceEEEeeCCCeEEEEEcCC-EEEEEEcCCCeEEEE-eecCCccccceEEcCCCC-EEEEeCC-
Q 018705           38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILCDNE-  113 (351)
Q Consensus        38 ~~l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g-~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~-L~v~d~~-  113 (351)
                      .+|.-++.........|..++++++++.||+...++ ..+.++.+++..... ...+..|. .++++++|+ +|++... 
T Consensus        26 ~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          26 LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSS
T ss_pred             CeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecC
Confidence            344444433222234567899998888999976533 234556544433222 23456788 999999985 5665532 


Q ss_pred             -CC-eEEE--cCCC--eEEec----------------CCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCc
Q 018705          114 -KG-LLKV--TEEG--VEAIV----------------PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYG  170 (351)
Q Consensus       114 -~g-l~~~--~~~g--~~~l~----------------~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g  170 (351)
                       .+ +..+  ..++  ...+.                .....+-+++++|||+ +|+++..                 .+
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d  167 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------AN  167 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TT
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CC
Confidence             12 2221  1222  11110                0114577899999995 8888764                 34


Q ss_pred             eEEEEe-CCCCeEEEee-----cCccccceEEEcCCCCEEEEEecce----eEEeecCCCCceeE---E--ec-cCC---
Q 018705          171 QLRKYD-PKLKETTVLH-----EGFYFANGIALSKNEDFVVVCESWK----RYWLKGDRAGILDA---F--IE-NLP---  231 (351)
Q Consensus       171 ~l~~~d-~~~~~~~~~~-----~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~~~~~~~~~---~--~~-~~~---  231 (351)
                      .|++|+ ..++......     .....|.+++++||++.+|++....    .|.+...+......   .  .. ..+   
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (365)
T d1jofa_         168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccc
Confidence            666663 2234433221     2245789999999999999977544    34444322111110   0  00 000   


Q ss_pred             -------CCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEE
Q 018705          232 -------GGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR  303 (351)
Q Consensus       232 -------g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~  303 (351)
                             ..+..+.++++|+ ||++.......                             ....-..++++. +|.+..
T Consensus       248 ~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~-----------------------------~~~~i~~~~~~~-~g~~~~  297 (365)
T d1jofa_         248 PETGKGLYRADVCALTFSGKYMFASSRANKFE-----------------------------LQGYIAGFKLRD-CGSIEK  297 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTT-----------------------------SCCEEEEEEECT-TSCEEE
T ss_pred             cccccccCCccceEECCCCCEEEEEcccCCCc-----------------------------cceEEEEEEecC-CCceee
Confidence                   0134578999997 77775321110                             011123466676 775433


Q ss_pred             E--E-ECC-CCCcccceeEEEE---ECCEEEEEecCCCeEEEEeCCC
Q 018705          304 D--F-NDP-DATYISFVTSAAE---FDGNLYLASLQSNFIGILPLDG  343 (351)
Q Consensus       304 ~--~-~~~-~g~~~~~~~~~~~---~~g~L~ig~~~~~~i~~~~~~~  343 (351)
                      .  + ..+ .|.   ....+..   ++..||++...++.|.+++...
T Consensus       298 ~~~~~~~~~~G~---~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         298 QLFLSPTPTSGG---HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEECSSCCT---TCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EeEeeEEEcCCC---CccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            2  2 222 232   2223332   3456999998889898887644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-05  Score=70.54  Aligned_cols=178  Identities=14%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             CCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE----EEEee--cCCccccceEEcCCCCEEEEeCCCCeEEEc-C---
Q 018705           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL----VNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E---  121 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~----~~~~~--~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~---  121 (351)
                      ..-.++++++++..|+++. +|.|..||..++..    .....  ...... .+++.++|+++++....+.+++. .   
T Consensus        52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-~v~~s~dg~~l~s~~~dg~i~iwd~~~~  129 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEE-EEEEcCCCCEEEEeeccccccccccccc
Confidence            4457899997666777775 88999999754421    22211  123345 89999999877655555666654 2   


Q ss_pred             CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEc
Q 018705          122 EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALS  198 (351)
Q Consensus       122 ~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~  198 (351)
                      .+  ...+.........+++++++.+.++.+.                 .+.+..++..+++....... ......++++
T Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         130 TPRIKAELTSSAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccc
Confidence            22  2223222355677889999977776543                 45788888877766544433 3445688999


Q ss_pred             CCCCEEEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          199 KNEDFVVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       199 ~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      ++++.++++...+.+.+-+...++. ..+  ...+....++++++|++.++..
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccccceeeccc--ccccceEEEEEcccccccceec
Confidence            9999887777666222222222222 222  2233345577888888666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.77  E-value=1.7e-05  Score=68.67  Aligned_cols=252  Identities=13%  Similarity=0.074  Sum_probs=135.1

Q ss_pred             EecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-
Q 018705           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-  121 (351)
Q Consensus        45 ~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-  121 (351)
                      +...|.-..-.+++|+|++..|.++..||.|..||..+++... +........ .+++.++|+++++....+.+++. . 
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeeccccc
Confidence            3444544455789999877788899999999999998886643 333334456 89999999876655444444443 1 


Q ss_pred             CC------eEEecCCCCCcccEE---------EccCCcEEEEeCCCccCC------c-c--------cccccccccCCce
Q 018705          122 EG------VEAIVPDASFTNDVI---------AASDGTLYFTVASTKYTP------T-D--------FYKDMAEGKPYGQ  171 (351)
Q Consensus       122 ~g------~~~l~~~~~~~n~l~---------~d~dG~ly~t~~~~~~~~------~-~--------~~~~~~~~~~~g~  171 (351)
                      ..      ...+...........         ...++.............      . .        ....+..+..++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            11      112211111111111         111111111111000000      0 0        0001223455678


Q ss_pred             EEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEecc-CCCCCCceEECCCCCEEE
Q 018705          172 LRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWI  247 (351)
Q Consensus       172 l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~-~~g~pd~i~~d~~G~lwv  247 (351)
                      +..||..+++....... -...+.++++|+++.++.+..++  ++|-.. .......+... .......+.++++|++.+
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec-ccccccccccccccCceEEEEECCCCCEEE
Confidence            99999887765443332 34567899999999777776665  444221 11112222111 111124567899998766


Q ss_pred             EEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-E
Q 018705          248 GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-N  325 (351)
Q Consensus       248 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~  325 (351)
                      +...                                    .+.|..+|..+++.+..+..+.+    .++++... ++ .
T Consensus       287 ~g~~------------------------------------dg~i~iwd~~~~~~~~~~~~H~~----~V~~l~~s~d~~~  326 (340)
T d1tbga_         287 AGYD------------------------------------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMA  326 (340)
T ss_dssp             EEET------------------------------------TSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSC
T ss_pred             EEEC------------------------------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEeCCCCE
Confidence            6443                                    13477788767888888865443    46777665 34 4


Q ss_pred             EEEEecCCCeEEEE
Q 018705          326 LYLASLQSNFIGIL  339 (351)
Q Consensus       326 L~ig~~~~~~i~~~  339 (351)
                      |..|+. .+.|..+
T Consensus       327 l~s~s~-Dg~v~iW  339 (340)
T d1tbga_         327 VATGSW-DSFLKIW  339 (340)
T ss_dssp             EEEEET-TSCEEEE
T ss_pred             EEEEcc-CCEEEEe
Confidence            544443 4445443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=6.3e-07  Score=78.44  Aligned_cols=93  Identities=10%  Similarity=0.035  Sum_probs=65.4

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-Ee-ecCCccccceEEcCCCC-EEEEeCCCC-eEEEcC-CC--eEEec
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WK-HIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-EG--VEAIV  128 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~-~~~~~p~~gl~~d~~G~-L~v~d~~~g-l~~~~~-~g--~~~l~  128 (351)
                      ++++++++..++++..++.|..||.+++++.. +. .....|. ++++++||+ +|++....+ +..++. ++  ...+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc-eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            35677555667788999999999999998743 32 2245688 999999996 678876555 556663 55  33332


Q ss_pred             CCC------CCcccEEEccCC-cEEEEe
Q 018705          129 PDA------SFTNDVIAASDG-TLYFTV  149 (351)
Q Consensus       129 ~~~------~~~n~l~~d~dG-~ly~t~  149 (351)
                      ...      ..|.++++++|| .+|++.
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEe
Confidence            211      578999999999 477765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.76  E-value=4.7e-06  Score=73.06  Aligned_cols=179  Identities=9%  Similarity=0.011  Sum_probs=105.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeE-EEEeecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--e--E
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--V--E  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~--~  125 (351)
                      .|..++++|+++.++.+. ++.|+.++.++++. ..+........ .+++.++|+++++....+.++++  ..+  .  .
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence            456789998777776664 56799999877654 33433334456 89999999887766566767776  222  2  2


Q ss_pred             EecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+......+.+++++++|..+++.+...               ...+..++.++++.. .+.......+.++++|+++.+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGR---------------ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCS---------------SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             ccccccCccccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccceee
Confidence            3333335788999999998776654311               112344444444332 222222346789999999855


Q ss_pred             EEE-ecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEe
Q 018705          205 VVC-ESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       205 yv~-~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                      +++ ..++  ++|  +...++..............+.++++|++.++..
T Consensus       162 l~sgs~d~~i~i~--d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         162 IISGSDDNTVAIF--EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             EEEEETTSCEEEE--ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ecccccccccccc--cccccccccccccccccccccccCcccccccccc
Confidence            554 3334  444  2222232222212122235678899998777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=7.1e-06  Score=75.59  Aligned_cols=168  Identities=8%  Similarity=-0.112  Sum_probs=102.5

Q ss_pred             CeEEEE-EcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc-CCC-e---EEecCCCCCccc
Q 018705           64 GALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-V---EAIVPDASFTND  136 (351)
Q Consensus        64 g~lyv~-~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~-~~g-~---~~l~~~~~~~n~  136 (351)
                      +.+++. ..+|.|..||.++++...-...+..|+ +++|++||+ +|++...+.+..++ .++ .   ..+... ..+.+
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-~~~~~  109 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARS  109 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-CCCCC
Confidence            344454 458899999999988765445556799 999999996 66666544444555 233 2   222222 34555


Q ss_pred             EEE----ccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC------------ccccceEEEcC
Q 018705          137 VIA----ASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------FYFANGIALSK  199 (351)
Q Consensus       137 l~~----d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~ngi~~~~  199 (351)
                      ++.    ++||+ +|++...                 .+.+..||..+++.......            .....+|++++
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             eEEecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            554    56895 7777654                 46788999888876543221            12344688899


Q ss_pred             CCCEEEEEecce-eEEeecCCCCc-eeEEeccCCCCCCceEECCCCC-EEEEEe
Q 018705          200 NEDFVVVCESWK-RYWLKGDRAGI-LDAFIENLPGGPDNINLAPDGS-FWIGLI  250 (351)
Q Consensus       200 dg~~lyv~~~~~-~~~i~~~~~~~-~~~~~~~~~g~pd~i~~d~~G~-lwva~~  250 (351)
                      +|..++++.... .+++-+....+ .++..-.....|.+++++++|+ ++++..
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            999888876544 44443322222 1111101223578899999998 555543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=6.3e-06  Score=73.77  Aligned_cols=144  Identities=8%  Similarity=-0.049  Sum_probs=90.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEEe
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAI  127 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~l  127 (351)
                      .+++++|++..+.++..+|.|..|+..+++.+...   ...+... .++++++|+++++-...+.++++.  ++  ...+
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            58999977777778888999999998777654332   2223455 899999998776554556666652  44  2222


Q ss_pred             c--CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe--ecC-ccccceEEEcCCCC
Q 018705          128 V--PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEG-FYFANGIALSKNED  202 (351)
Q Consensus       128 ~--~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~-~~~~ngi~~~~dg~  202 (351)
                      .  .....+.+++++|+|+..++.+..               ..-+++.++.........  ... -.....++++|+++
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGS---------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETT---------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccceeeccc---------------Ccceeeeeeccccccccccccccccccccccccccccc
Confidence            2  222568889999999766655431               012456666544332221  111 12346789999999


Q ss_pred             EEEEEecce--eEE
Q 018705          203 FVVVCESWK--RYW  214 (351)
Q Consensus       203 ~lyv~~~~~--~~~  214 (351)
                      .+..+..++  ++|
T Consensus       155 ~l~s~s~D~~v~v~  168 (371)
T d1k8kc_         155 LLAAGSCDFKCRIF  168 (371)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             ceeccccCcEEEEE
Confidence            776666555  555

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=1.6e-05  Score=68.73  Aligned_cols=217  Identities=14%  Similarity=0.088  Sum_probs=126.5

Q ss_pred             cCCCceEEEeeCCCeEEEE-EcCCEEEEEEcCCCeEEEEeec------CCccccceEEcCCCC-EEEEeCC---------
Q 018705           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGG-VILCDNE---------  113 (351)
Q Consensus        51 ~~~pe~i~~d~~~g~lyv~-~~~g~I~~~d~~~g~~~~~~~~------~~~p~~gl~~d~~G~-L~v~d~~---------  113 (351)
                      ...|.+++++|++..+|+. ..++.|..||..+++.......      ...+. +++++++|+ +|++...         
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee-eEEEcCCCcEEEEeecCCcceeeecc
Confidence            3568999999877788875 4689999999988876433211      23567 999999985 5555422         


Q ss_pred             ---CCeEEEcC-CC--eEEecCCCCCcccEEEccCCc-EEEEeCCCc-cCCc-----------cc----c-----cc---
Q 018705          114 ---KGLLKVTE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTK-YTPT-----------DF----Y-----KD---  162 (351)
Q Consensus       114 ---~gl~~~~~-~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~-~~~~-----------~~----~-----~~---  162 (351)
                         ..+..++. ++  ...+... ..+.++++++||. +|++..... +...           ..    .     ..   
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence               11222332 33  2222222 5788999999995 665442100 0000           00    0     00   


Q ss_pred             ---------------------cccccCCceEEEEeCCCCeEEEe--ecCccccceEEEcCCCCEEEEEecceeEEeecCC
Q 018705          163 ---------------------MAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCESWKRYWLKGDR  219 (351)
Q Consensus       163 ---------------------~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~  219 (351)
                                           .......+.+..++..+++....  ......+..+++++++..+|..+..-++|  +..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~--d~~  268 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF--DLE  268 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEE--ETT
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEE--ECC
Confidence                                 00011123467777766655432  22233455678889998777765221333  222


Q ss_pred             CCceeEEeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC
Q 018705          220 AGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND  298 (351)
Q Consensus       220 ~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  298 (351)
                      .++..... ..+..+..++++++|+ ||++...                                     +.|..+|.++
T Consensus       269 ~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~-------------------------------------~~i~v~D~~t  310 (337)
T d1pbyb_         269 KNASIKRV-PLPHSYYSVNVSTDGSTVWLGGAL-------------------------------------GDLAAYDAET  310 (337)
T ss_dssp             TTEEEEEE-ECSSCCCEEEECTTSCEEEEESBS-------------------------------------SEEEEEETTT
T ss_pred             CCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCC-------------------------------------CcEEEEECCC
Confidence            23322222 2345678899999997 7776432                                     3588899878


Q ss_pred             CeEEEEEECCC
Q 018705          299 GKIIRDFNDPD  309 (351)
Q Consensus       299 g~~~~~~~~~~  309 (351)
                      ++.+..+..+.
T Consensus       311 ~~~v~~i~~~g  321 (337)
T d1pbyb_         311 LEKKGQVDLPG  321 (337)
T ss_dssp             CCEEEEEECGG
T ss_pred             CcEEEEEECCC
Confidence            89998887653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=8e-06  Score=70.95  Aligned_cols=168  Identities=10%  Similarity=0.102  Sum_probs=99.5

Q ss_pred             CeEEEEE-cCCEEEEEEcCC-CeEEEE--eecCCccccceEEcCCCC-EEEEeCCCCeE---EEcCCC--eEEecC--CC
Q 018705           64 GALYTAT-RDGWVKYFILHN-ETLVNW--KHIDSQSLLGLTTTKDGG-VILCDNEKGLL---KVTEEG--VEAIVP--DA  131 (351)
Q Consensus        64 g~lyv~~-~~g~I~~~d~~~-g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~---~~~~~g--~~~l~~--~~  131 (351)
                      ..+||+. .++.|..|+.+. +..+..  ....+.|. +|++++||+ ||++....+.+   .++..+  .+....  ..
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            4678876 578888888643 333322  34557788 999999996 78888655433   333333  333221  12


Q ss_pred             CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE---eecCccccceEEEcCCCCEEEEE
Q 018705          132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV---LHEGFYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       132 ~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~ngi~~~~dg~~lyv~  207 (351)
                      ..|.+++++|||+ +|+++..                 .+.+..++........   .......+.++++++|++.++++
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~  145 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP  145 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence            6789999999995 6776543                 2355555443333322   23344568899999999988888


Q ss_pred             ecce-eEE---eecCCCCce---eEEeccCCCCCCceEECCCCCEEEEE
Q 018705          208 ESWK-RYW---LKGDRAGIL---DAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       208 ~~~~-~~~---i~~~~~~~~---~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                      +... .+.   .........   ..........|..+++++++......
T Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            7665 332   222111110   01111122346778999888754433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.63  E-value=1.6e-06  Score=78.29  Aligned_cols=179  Identities=16%  Similarity=0.176  Sum_probs=101.6

Q ss_pred             CCCceEEEeeCCCeEEEEEc---CCEEEEEEc--C-----------CCeEEEE----e-ecCCccccceEEcCCCC-EEE
Q 018705           52 NHPEDVSVVVSKGALYTATR---DGWVKYFIL--H-----------NETLVNW----K-HIDSQSLLGLTTTKDGG-VIL  109 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~---~g~I~~~d~--~-----------~g~~~~~----~-~~~~~p~~gl~~d~~G~-L~v  109 (351)
                      ..|..+++++++..+|+...   .+.++.+..  .           +++....    . .....|+ +++++++|+ +|+
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEE
Confidence            46889999876667787653   344544321  1           1111110    0 1223578 999999996 899


Q ss_pred             EeCCCC-eEEEc--CCC-eEEec----C-CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC
Q 018705          110 CDNEKG-LLKVT--EEG-VEAIV----P-DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       110 ~d~~~g-l~~~~--~~g-~~~l~----~-~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                      ++.+.. ++.++  .+| .....    . ....|..++++|||+ +|++...                 .+.|..|+.++
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------------~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------------GNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------------CCEEEEEEecC
Confidence            987654 44443  355 33221    1 126899999999995 7777754                 34555554332


Q ss_pred             Ce--E-EEee-----------------cCccccceEEEcCCCCEEEEEecce---------eEEeecCCCCcee---EEe
Q 018705          180 KE--T-TVLH-----------------EGFYFANGIALSKNEDFVVVCESWK---------RYWLKGDRAGILD---AFI  227 (351)
Q Consensus       180 ~~--~-~~~~-----------------~~~~~~ngi~~~~dg~~lyv~~~~~---------~~~i~~~~~~~~~---~~~  227 (351)
                      +.  . ....                 .....+..|+++|||++||++....         .+.+.  ..+...   .+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~--~~g~~~~~~~~~  302 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR--DCGSIEKQLFLS  302 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC--TTSCEEEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec--CCCceeeEeEee
Confidence            21  1 1110                 0112356799999999999986432         12222  222221   111


Q ss_pred             c--cCCCCCCceEECC-CCC-EEEEEe
Q 018705          228 E--NLPGGPDNINLAP-DGS-FWIGLI  250 (351)
Q Consensus       228 ~--~~~g~pd~i~~d~-~G~-lwva~~  250 (351)
                      .  .....|.++++++ +|+ |||+..
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeC
Confidence            1  1224789999986 787 777754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.62  E-value=9e-06  Score=74.36  Aligned_cols=179  Identities=8%  Similarity=-0.048  Sum_probs=101.3

Q ss_pred             CCCceEEEeeC-CCeEEEEE-cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEc-CCC-eEE
Q 018705           52 NHPEDVSVVVS-KGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEA  126 (351)
Q Consensus        52 ~~pe~i~~d~~-~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~-~~g-~~~  126 (351)
                      ..|..+.++.+ .+.++|.. .+|.|..||..+++...-...+..|. +++|++||+ ||++...+.+..++ .++ ...
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            44555555533 34555644 58999999998887744334456789 999999996 56666544444444 344 222


Q ss_pred             ---ecCCCCCcccEE----EccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-c--------
Q 018705          127 ---IVPDASFTNDVI----AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F--------  189 (351)
Q Consensus       127 ---l~~~~~~~n~l~----~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~--------  189 (351)
                         +... ..+.+++    ++|||+ +|++...                 .+.+..+|.++++....... .        
T Consensus        98 ~~~i~~~-~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  159 (426)
T d1hzua2          98 VAEIKIG-IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTY  159 (426)
T ss_dssp             EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EEEEeCC-CCCcceEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccceee
Confidence               2222 3344444    456885 6776543                 35678888877765443221 1        


Q ss_pred             ---cccceEEEcCCCCEEEEEecce-eEEee-cCCCCcee-EEeccCCCCCCceEECCCCCEEEEEe
Q 018705          190 ---YFANGIALSKNEDFVVVCESWK-RYWLK-GDRAGILD-AFIENLPGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       190 ---~~~ngi~~~~dg~~lyv~~~~~-~~~i~-~~~~~~~~-~~~~~~~g~pd~i~~d~~G~lwva~~  250 (351)
                         .....++.++++..++++.... .+++. ........ ... .....+.++.++++|+++....
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~  225 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAA  225 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEE
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-ccCCccEeeeECCCCcEEEeee
Confidence               1123466777777666665544 33322 11111111 111 1223467789999998666554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=5e-06  Score=76.64  Aligned_cols=149  Identities=13%  Similarity=0.056  Sum_probs=97.8

Q ss_pred             ceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE--eecCCccccceEEc----CCCC-EEEEeCCCC
Q 018705           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW--KHIDSQSLLGLTTT----KDGG-VILCDNEKG  115 (351)
Q Consensus        43 ~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~--~~~~~~p~~gl~~d----~~G~-L~v~d~~~g  115 (351)
                      +..+..+  ..|.+++++|++..+|++..+|.|..||..+++.+..  ......|. ++++.    +||+ ||++....+
T Consensus        55 ~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          55 KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCC
Confidence            3455555  4699999999889999999999999999877653222  23334565 66654    5896 677766555


Q ss_pred             eEEEc-C-CC--eEEecCCC-----------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCC
Q 018705          116 LLKVT-E-EG--VEAIVPDA-----------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (351)
Q Consensus       116 l~~~~-~-~g--~~~l~~~~-----------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  179 (351)
                      .+++. . ++  +..+....           ..+..++.+++|. ++++...                 .+.++.+|..+
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-----------------~~~i~~~d~~~  194 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----------------TGKILLVDYTD  194 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEETTC
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----------------CCeEEEEEccC
Confidence            55544 3 44  33332211           3445577788874 4455433                 56888888766


Q ss_pred             CeEEEe--ecCccccceEEEcCCCCEEEEEecce
Q 018705          180 KETTVL--HEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       180 ~~~~~~--~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .+...+  ......|.+++++|||+++|++....
T Consensus       195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             CCcceEEEEcccCccccceECCCCCEEEEecccc
Confidence            543221  23346789999999999898887655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=5.2e-05  Score=64.23  Aligned_cols=141  Identities=6%  Similarity=0.033  Sum_probs=91.4

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCe-EEEcC-CC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGL-LKVTE-EG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl-~~~~~-~g--~~~l  127 (351)
                      .-.+++++|++..|.++..||.|..||..+++.. .+........ .+++++++.+.+.....+. ...+. ..  ...+
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRTM   97 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeeccccccccccccccccccccccccccccc
Confidence            3468999987788888999999999998777653 3333334456 8999999987665544433 33332 22  2222


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE-eecCccccceEEEcCCCCEEEE
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVV  206 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngi~~~~dg~~lyv  206 (351)
                      .........+.+.+++...++...                 ++.+..||..+++... +.........++++++++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          98 HGHDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccceeeeccCCCceEEeecc-----------------CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence            222256677888888876665543                 4577888877665433 3333345677899999986666


Q ss_pred             Eecce
Q 018705          207 CESWK  211 (351)
Q Consensus       207 ~~~~~  211 (351)
                      +..++
T Consensus       161 ~~~d~  165 (317)
T d1vyhc1         161 CSNDQ  165 (317)
T ss_dssp             EETTS
T ss_pred             EeCCC
Confidence            66555

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=8.1e-05  Score=65.86  Aligned_cols=230  Identities=12%  Similarity=0.101  Sum_probs=129.8

Q ss_pred             ceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEee-cCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC-eEEecCC
Q 018705           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-VEAIVPD  130 (351)
Q Consensus        55 e~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g-~~~l~~~  130 (351)
                      .+++++|++..+.++..+|.|..++...++...... ...... .+.+.+++...+.....+.+++. . .. .......
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            468999777788899999999999987776644332 233445 78888888655544455555555 3 33 2221111


Q ss_pred             CCCcccEEEcc-CCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC--------ccccceEEEcCCC
Q 018705          131 ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------FYFANGIALSKNE  201 (351)
Q Consensus       131 ~~~~n~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------~~~~ngi~~~~dg  201 (351)
                      ......+.+.+ +|.+.++.+.                 ++.+..|+..+++.......        ......+++++++
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             SSCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             ccccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence            12333444444 5666555432                 45677787766554322211        1234678999999


Q ss_pred             CEEEEEecce--eEE-eecCC---------CCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChhHHHH
Q 018705          202 DFVVVCESWK--RYW-LKGDR---------AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  269 (351)
Q Consensus       202 ~~lyv~~~~~--~~~-i~~~~---------~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~~~~  269 (351)
                      +.|+.+..++  ++| +....         .+...............++++++|++.++...                  
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------------------  328 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------------------  328 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------------------
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC------------------
Confidence            9777766655  444 22110         00001111011122344677888876555432                  


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-------CCEEEEEecCCCeEEEEeCC
Q 018705          270 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-------DGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-------~g~L~ig~~~~~~i~~~~~~  342 (351)
                                        .+.|..+|..+++.+..+..+.+    .++++...       ++.+.++....+.|..++++
T Consensus       329 ------------------dg~i~vwd~~~~~~~~~l~~H~~----~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 ------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ------------------CCEEEEEECCCCcEEEEEeCCCC----CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                              24577888768898888876554    35555432       35555555546667766653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.50  E-value=4.2e-06  Score=73.46  Aligned_cols=131  Identities=11%  Similarity=0.062  Sum_probs=90.1

Q ss_pred             EeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCE-EEEeCCC-CeEEEc-C-CC-eEEecCCCCC
Q 018705           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEK-GLLKVT-E-EG-VEAIVPDASF  133 (351)
Q Consensus        59 ~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~d~~~-gl~~~~-~-~g-~~~l~~~~~~  133 (351)
                      |+|.+|.+++....|+|+.++..+++.+.+. ...+.. .+++.+||+. +++.... ..+++. . +| .+.+......
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~   87 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN   87 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence            6665666666566789999999888776653 345677 9999999964 4443333 344444 3 55 6655554467


Q ss_pred             cccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-CccccceEEEcCCCCEEEEEe
Q 018705          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       134 ~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngi~~~~dg~~lyv~~  208 (351)
                      +..++++|||+..++...                 .+.++.|+..+++...... .......++++|||+.|.++.
T Consensus        88 v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             EEeeeecccccccceecc-----------------ccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence            889999999976655543                 3578899988777655443 334566799999999776654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.48  E-value=5.9e-07  Score=83.64  Aligned_cols=166  Identities=10%  Similarity=0.132  Sum_probs=104.6

Q ss_pred             CceEecCCCcCCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecC---------CccccceEEcCC----CCE
Q 018705           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHID---------SQSLLGLTTTKD----GGV  107 (351)
Q Consensus        42 ~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~---------~~p~~gl~~d~~----G~L  107 (351)
                      .+|+++++ +..|.+|++. .++.+||+.. .|+|++++.++++.+.+....         +-.. +|+++++    +.+
T Consensus        18 ~~~~ia~~-L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~i   94 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYI   94 (450)
T ss_dssp             CEEEEECC-CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEE
T ss_pred             EEEEEECC-CCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEE
Confidence            35778777 8999999999 5788898886 799999998788766543211         1234 7999874    678


Q ss_pred             EEEeCC------------C-CeEEEc--CCC--e---EEecCC-----CCCcccEEEccCCcEEEEeCCCccC-Ccc---
Q 018705          108 ILCDNE------------K-GLLKVT--EEG--V---EAIVPD-----ASFTNDVIAASDGTLYFTVASTKYT-PTD---  158 (351)
Q Consensus       108 ~v~d~~------------~-gl~~~~--~~g--~---~~l~~~-----~~~~n~l~~d~dG~ly~t~~~~~~~-~~~---  158 (351)
                      |++-..            . .+.+..  .+.  .   +.+...     ...-..|++++||.|||+....... ...   
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~  174 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFL  174 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTS
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccccccccc
Confidence            885310            0 122222  211  1   111111     1456679999999999987642110 000   


Q ss_pred             -cccc----------cccccCCceEEEEeCCCCe-----------EEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          159 -FYKD----------MAEGKPYGQLRKYDPKLKE-----------TTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       159 -~~~~----------~~~~~~~g~l~~~d~~~~~-----------~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                       ....          --.....|.|+|++++...           .++++.++.+|.|++++++|+ ||++|.+.
T Consensus       175 ~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G~  248 (450)
T d1crua_         175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGP  248 (450)
T ss_dssp             CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECS
T ss_pred             ccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeeccccc
Confidence             0000          0011235889999876432           145788899999999999887 99998753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.40  E-value=1.3e-05  Score=70.09  Aligned_cols=151  Identities=8%  Similarity=0.089  Sum_probs=99.9

Q ss_pred             CCCceEEEeeCCCeEEEEE-cCC-EEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCC-eEEEcC-CC--eE
Q 018705           52 NHPEDVSVVVSKGALYTAT-RDG-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VE  125 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~-~~g-~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~  125 (351)
                      ....+++|+|++..|+++. .+| .|+.+|..+++.+.+......+. .++++++|+.+++....+ ++.++. ++  ..
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEE-eeeecccccccceeccccccccccccccceee
Confidence            4567999998776776544 443 57888988888877766666677 999999997666544444 555554 44  33


Q ss_pred             EecCCCCCcccEEEccCCcEE-EEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccccceEEEcCCCCEE
Q 018705          126 AIVPDASFTNDVIAASDGTLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (351)
Q Consensus       126 ~l~~~~~~~n~l~~d~dG~ly-~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~l  204 (351)
                      .+........++++++||... ++......        ...+...+.+..+|..+++...+........++++++||+.|
T Consensus       122 ~~~~~~~~~~~~~~spdg~~la~~~~~~~~--------~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l  193 (360)
T d1k32a3         122 IERSREAMITDFTISDNSRFIAYGFPLKHG--------ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL  193 (360)
T ss_dssp             EEECSSSCCCCEEECTTSCEEEEEEEECSS--------TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred             eeecccccccchhhccceeeeeeecccccc--------ceeeccccceeeeccccCceeeecccccccccccccCCCCEE
Confidence            333333677889999999643 33321110        011222346888998888776665555556778999999988


Q ss_pred             EEEecce
Q 018705          205 VVCESWK  211 (351)
Q Consensus       205 yv~~~~~  211 (351)
                      ++.....
T Consensus       194 ~~~s~~~  200 (360)
T d1k32a3         194 YYLSYRS  200 (360)
T ss_dssp             EEEESCC
T ss_pred             EEEeCCC
Confidence            8766544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=0.00052  Score=59.63  Aligned_cols=230  Identities=11%  Similarity=0.091  Sum_probs=125.1

Q ss_pred             CceEEEeeC-C-CeEEEEEcCCEEEEEEcCCCe----EE-----EEeecCCccccceEEcCCCCEEEE-eCC-CCeEEEc
Q 018705           54 PEDVSVVVS-K-GALYTATRDGWVKYFILHNET----LV-----NWKHIDSQSLLGLTTTKDGGVILC-DNE-KGLLKVT  120 (351)
Q Consensus        54 pe~i~~d~~-~-g~lyv~~~~g~I~~~d~~~g~----~~-----~~~~~~~~p~~gl~~d~~G~L~v~-d~~-~gl~~~~  120 (351)
                      -.++++.|. + ..+..+..||.|..||...++    .+     .+....+... .+++.++|+.+++ ..+ .+..++.
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            347888763 3 345568889999888764331    11     1112223345 8899999975543 322 2333332


Q ss_pred             --CCC--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC----ccc
Q 018705          121 --EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FYF  191 (351)
Q Consensus       121 --~~g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----~~~  191 (351)
                        .++  ...+......++++++.+++. +.++.+.                 ++.+..|+..+.+.......    ...
T Consensus       145 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----------------d~~v~~~d~~~~~~~~~~~~~~~~~~~  207 (325)
T d1pgua1         145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHHKQGSF  207 (325)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             eecccccceeeeecccccccccccccccceEEEeec-----------------ccccccccccccccceecccccCCCCc
Confidence              344  455544346778899999874 4454433                 46788888766554332222    233


Q ss_pred             cceEEEcCCC-CEEEEEecce--eEEeecCCCCce-eEEeccCCCCCCceEEC---CCCCEEEEEecCCchhhhhhhcCh
Q 018705          192 ANGIALSKNE-DFVVVCESWK--RYWLKGDRAGIL-DAFIENLPGGPDNINLA---PDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       192 ~ngi~~~~dg-~~lyv~~~~~--~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d---~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      ...++++||+ +.+..+..++  ++|  +...++. ..+. .......++.+.   ++|.+.++...             
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iw--d~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~-------------  271 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCF--DGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGA-------------  271 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEE--ETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEET-------------
T ss_pred             cEEeeeccccceeccccccccceeee--eecccccccccc-ccccccccceeeeeccCCCEEEEEeC-------------
Confidence            5679999975 4444444455  454  2222222 2222 111112333333   67776666443             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CCEEEEEecCCCeEEEEeC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  341 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~ig~~~~~~i~~~~~  341 (351)
                                             .+.|..+|.++++.+..+............++... ++.|.-++. .+.|.++++
T Consensus       272 -----------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vwdl  325 (325)
T d1pgua1         272 -----------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYEL  325 (325)
T ss_dssp             -----------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEET
T ss_pred             -----------------------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEEEC
Confidence                                   23566778767888888865332222222344433 456655554 577887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=0.0003  Score=61.99  Aligned_cols=178  Identities=11%  Similarity=0.049  Sum_probs=100.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-Eee------------------cCCccccceEEcCCCCEEEEeCCC
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKH------------------IDSQSLLGLTTTKDGGVILCDNEK  114 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~------------------~~~~p~~gl~~d~~G~L~v~d~~~  114 (351)
                      -.+++|++++..|.+|. |+.|..|+..+++... +..                  ...... .+++.++|+++++....
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            46899997666666664 8889999987775422 110                  011234 78999999877765566


Q ss_pred             CeEEEc-C-CC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCcc
Q 018705          115 GLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (351)
Q Consensus       115 gl~~~~-~-~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~  190 (351)
                      +.+++. . .+  ...+......+..++..+++...++.+.                 .+.+..||..+...........
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~  205 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTLSIED  205 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-----------------ceeeeeeecccccccccccccc
Confidence            666666 2 44  3333322356778888888865554433                 4678888887766544443333


Q ss_pred             ccceEEEcC-CCCEEEEEecceeEEeecCCCCc-eeEEec---cC---CCCCCceEECCCCCEEEEEe
Q 018705          191 FANGIALSK-NEDFVVVCESWKRYWLKGDRAGI-LDAFIE---NL---PGGPDNINLAPDGSFWIGLI  250 (351)
Q Consensus       191 ~~ngi~~~~-dg~~lyv~~~~~~~~i~~~~~~~-~~~~~~---~~---~g~pd~i~~d~~G~lwva~~  250 (351)
                      ....+++.+ +++.++.+..++.+.+-+...+. ...+..   ..   .+....+.++++|++.++..
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            444455554 66666666555522222211111 111110   01   11223467888888666554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.34  E-value=1.2e-05  Score=70.00  Aligned_cols=97  Identities=15%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             ceEEcCCCCEEEE-eCCCCeEEEcC-CC--eEEecC-CCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCce
Q 018705           98 GLTTTKDGGVILC-DNEKGLLKVTE-EG--VEAIVP-DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (351)
Q Consensus        98 gl~~d~~G~L~v~-d~~~gl~~~~~-~g--~~~l~~-~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~  171 (351)
                      |++++++|+.+++ ...+.+..+|. ++  ++.+.. ....|.+++++|||+ +|++...                 .+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~-----------------~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----------------YGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----------------TTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC-----------------CCc
Confidence            5678888876664 44455666663 55  444432 225799999999995 7888754                 468


Q ss_pred             EEEEeCCCCeEEEeecC-------ccccceEEEcCCCCEEEEEecce
Q 018705          172 LRKYDPKLKETTVLHEG-------FYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       172 l~~~d~~~~~~~~~~~~-------~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      |..||..+++.......       ...|.++++++||+.+|++....
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~  110 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT  110 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCC
Confidence            99999998876433221       23588999999999999987543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=8.7e-05  Score=64.85  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=122.6

Q ss_pred             eEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEEEe--------ecCCccccceEEcCCCC-EEEEeCCC-C
Q 018705           56 DVSVVVSKGALYTAT----------RDGWVKYFILHNETLVNWK--------HIDSQSLLGLTTTKDGG-VILCDNEK-G  115 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~~~--------~~~~~p~~gl~~d~~G~-L~v~d~~~-g  115 (351)
                      +++++|++..+|+..          .+|.|..||..+++.....        .....|. +++++++|+ +++++... .
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSC
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCc-eEEEecCCCeeEEecCCCCc
Confidence            799998888899854          3678999999888764321        1234678 999999985 67776443 3


Q ss_pred             eEEE-cC-CC--eEEecCCC-------CCcccEEEccCCc-EEEEeCCCc---------cCCcc--c---------cccc
Q 018705          116 LLKV-TE-EG--VEAIVPDA-------SFTNDVIAASDGT-LYFTVASTK---------YTPTD--F---------YKDM  163 (351)
Q Consensus       116 l~~~-~~-~g--~~~l~~~~-------~~~n~l~~d~dG~-ly~t~~~~~---------~~~~~--~---------~~~~  163 (351)
                      ...+ +. ++  .+.+....       .....+++.+||. +++......         .....  .         ...+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  209 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence            3333 33 44  33332221       3344577888874 454432110         00000  0         0011


Q ss_pred             ccccCCceEEEEeCCCCeEEEeecC----------c---cccceEEEcCCCCEEEEEecce----------eEEeecCCC
Q 018705          164 AEGKPYGQLRKYDPKLKETTVLHEG----------F---YFANGIALSKNEDFVVVCESWK----------RYWLKGDRA  220 (351)
Q Consensus       164 ~~~~~~g~l~~~d~~~~~~~~~~~~----------~---~~~ngi~~~~dg~~lyv~~~~~----------~~~i~~~~~  220 (351)
                      ......+.++.++..+++...+...          .   .....++++++++.+|+.....          .+++-+...
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence            2223456788888776665443210          0   1223589999999888865432          334433322


Q ss_pred             CceeEEeccCCCCCCceEECCCCC--EEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCC
Q 018705          221 GILDAFIENLPGGPDNINLAPDGS--FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND  298 (351)
Q Consensus       221 ~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  298 (351)
                      ++..... .....|..+++++||+  ++++...                                    .+.|..+|.++
T Consensus       290 ~~~~~~~-~~~~~~~~~a~spDG~~~l~v~~~~------------------------------------d~~i~v~D~~t  332 (355)
T d2bbkh_         290 GERLAKF-EMGHEIDSINVSQDEKPLLYALSTG------------------------------------DKTLYIHDAES  332 (355)
T ss_dssp             CCEEEEE-EEEEEECEEEECCSSSCEEEEEETT------------------------------------TTEEEEEETTT
T ss_pred             CcEEEEe-cCCCCEEEEEEcCCCCeEEEEEECC------------------------------------CCEEEEEECCC
Confidence            3321111 1123467899999997  4554321                                    24688899889


Q ss_pred             CeEEEEEEC
Q 018705          299 GKIIRDFND  307 (351)
Q Consensus       299 g~~~~~~~~  307 (351)
                      |+.+.++..
T Consensus       333 g~~~~~i~~  341 (355)
T d2bbkh_         333 GEELRSVNQ  341 (355)
T ss_dssp             CCEEEEECC
T ss_pred             CCEEEEEeC
Confidence            999998854

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=4.1e-05  Score=68.28  Aligned_cols=177  Identities=10%  Similarity=-0.015  Sum_probs=100.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe---ecCCccccceEEcCCCCEEEEeCCCCeEEEc---CCC-eE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VE  125 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~---~~g-~~  125 (351)
                      .-.+++|+|+++.|.++..|+.|..||..++..+...   .....+. .++++++|+.+++....+.+++.   ... ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            3478999987788888899999999998777654322   2233456 89999999866655455554443   222 22


Q ss_pred             Ee---cCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCC------------------eEE
Q 018705          126 AI---VPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK------------------ETT  183 (351)
Q Consensus       126 ~l---~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~------------------~~~  183 (351)
                      ..   ... ...+.+++++|+|.++++.+.                 ++.+..|+...+                  +..
T Consensus       132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             cccccccccccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceeee
Confidence            21   111 256778899999987776543                 233444443211                  111


Q ss_pred             -EeecCccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEE
Q 018705          184 -VLHEGFYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  249 (351)
Q Consensus       184 -~~~~~~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~  249 (351)
                       .........++++++|+++.|+.+..++  ++|-.. .......+.. .......+++.++|.+.++.
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KKMAVATLAS-ETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-GTTEEEEEEC-SSCCEEEEEEEETTEEEEEE
T ss_pred             eeccCccCcEEEEEeecccccccccccCCcceEEeee-cccceeeeec-ccccceeeeecCCCCEEEEE
Confidence             1111223457899999999777766555  444221 1111222221 11112446777777766554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=5.2e-05  Score=65.35  Aligned_cols=141  Identities=9%  Similarity=0.065  Sum_probs=93.1

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc-C-CC--eEEecCC
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPD  130 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~-~-~g--~~~l~~~  130 (351)
                      .....+....+.++..++.|..||..+++... +........ .++++++|+++++....+.+++. . ..  ...+...
T Consensus       189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence            34444445566778889999999987776543 333334456 89999999877665555655555 2 33  3333222


Q ss_pred             --CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEE
Q 018705          131 --ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVC  207 (351)
Q Consensus       131 --~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~  207 (351)
                        ...+..++++++|.+.++.+.                 +|.|..||..+++......+ ....++++++||++.|+.+
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence              255788999999987776543                 46799999877765443332 3456789999999867666


Q ss_pred             ecce--eEE
Q 018705          208 ESWK--RYW  214 (351)
Q Consensus       208 ~~~~--~~~  214 (351)
                      ..++  ++|
T Consensus       331 s~Dg~v~iW  339 (340)
T d1tbga_         331 SWDSFLKIW  339 (340)
T ss_dssp             ETTSCEEEE
T ss_pred             ccCCEEEEe
Confidence            6555  555

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=0.00073  Score=61.09  Aligned_cols=148  Identities=10%  Similarity=0.050  Sum_probs=89.1

Q ss_pred             eEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE--eecCCccccceEEc----CCCC-EEEEeCCCCe
Q 018705           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW--KHIDSQSLLGLTTT----KDGG-VILCDNEKGL  116 (351)
Q Consensus        44 ~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~--~~~~~~p~~gl~~d----~~G~-L~v~d~~~gl  116 (351)
                      ..+..+  ..|.+++++|++..+|++..+|.|..||.++++....  ......|. +++++    +||+ |+++....+.
T Consensus        56 ~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          56 KVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             EEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCe
Confidence            344444  4699999999889999999999999999887764322  12233455 55554    6886 6777655566


Q ss_pred             EEEc-C-CC--eEEecCCC-----------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCC
Q 018705          117 LKVT-E-EG--VEAIVPDA-----------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (351)
Q Consensus       117 ~~~~-~-~g--~~~l~~~~-----------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  180 (351)
                      +++. . .+  ...+....           .....++.++++. +|++...                 .+.+..++....
T Consensus       133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~  195 (426)
T d1hzua2         133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDI  195 (426)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECSSS
T ss_pred             EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-----------------CCeEEEEEeccc
Confidence            6654 2 44  33332211           1223345555553 3333322                 345555543322


Q ss_pred             e--EEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          181 E--TTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       181 ~--~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .  ..........+.++++++++++++++....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~  228 (426)
T d1hzua2         196 DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNS  228 (426)
T ss_dssp             SSCEEEEEECCSSEEEEEECTTSCEEEEEETTC
T ss_pred             cceeeEEeccCCccEeeeECCCCcEEEeeeecc
Confidence            2  112233456789999999999888887655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.22  E-value=3.3e-05  Score=70.91  Aligned_cols=200  Identities=15%  Similarity=0.081  Sum_probs=112.4

Q ss_pred             CCcCCCceEEE--eeCCCeEEEEE-cCCEEEEEEcCCCeEEEEee--cCCccccceEEcCCCC-EEEEeCCCCeEE----
Q 018705           49 GCVNHPEDVSV--VVSKGALYTAT-RDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGG-VILCDNEKGLLK----  118 (351)
Q Consensus        49 ~~~~~pe~i~~--d~~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~--~~~~p~~gl~~d~~G~-L~v~d~~~gl~~----  118 (351)
                      +....|.-...  .+++..+|+.. .+++|.++|.++++...+..  .+..|+ |+++.++|+ +||+........    
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCc
Confidence            33445654443  35577899876 57899999999988765443  356799 999999994 688654332221    


Q ss_pred             ---------------EcCC-C--eEEecCCCCCcccEEEccCCc-EEEEeCCCccCC---------cccc----------
Q 018705          119 ---------------VTEE-G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTP---------TDFY----------  160 (351)
Q Consensus       119 ---------------~~~~-g--~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~---------~~~~----------  160 (351)
                                     ++.. .  ..++... ..|.++++++||. +|+++....-..         .++.          
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                           2221 1  1111111 5799999999995 788764321000         0000          


Q ss_pred             ----cccccccCCceEEEEeC-CCCeEEEeecCccccceEEEcCCCCEEEEEecce----eEEeec------CCCCc-ee
Q 018705          161 ----KDMAEGKPYGQLRKYDP-KLKETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLKG------DRAGI-LD  224 (351)
Q Consensus       161 ----~~~~~~~~~g~l~~~d~-~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~~------~~~~~-~~  224 (351)
                          ..... ....++..++. .+.++.........|.|++++|||+++|++....    .+.+..      .+... ..
T Consensus       225 ~~~dGk~~~-v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         225 AVKAGNFKT-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             HHHTTCCBC-CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             EecCCCEEE-eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                00111 11123444443 3333333445567899999999999999986544    344321      11111 11


Q ss_pred             EEeccCCC-CCCceEECCCCCEEEEEec
Q 018705          225 AFIENLPG-GPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       225 ~~~~~~~g-~pd~i~~d~~G~lwva~~~  251 (351)
                      +..+...| .|-...+|.+|+.|.+.+.
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeecccccCcccceecCCceEEEcccc
Confidence            22211111 2344589999999998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0012  Score=55.19  Aligned_cols=227  Identities=15%  Similarity=0.154  Sum_probs=120.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEE-eecCCccccceEEcCCCCEEEEeCCCCeEEEc--CCC--eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l  127 (351)
                      ...++++++++..+..+..++.+..++....+.... ........ .+.+.++++..++....+.+++.  .++  ...+
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  139 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  139 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEeeecccccccccccccccccccccccccccccccccccce-eeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence            345778886666666777777677777654444322 12223344 67888888766655555666555  344  4444


Q ss_pred             cCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC-ccccceEEEc--------
Q 018705          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALS--------  198 (351)
Q Consensus       128 ~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~--------  198 (351)
                      .........++++++|.+.++.+.                 ++.+..++..+++....... ......++++        
T Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  202 (317)
T d1vyhc1         140 TGHREWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI  202 (317)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred             ccCCCcceeeecccCCCEEEEEeC-----------------CCeEEEEeeccceeeEEEecCCCCceEEEEeecccccee
Confidence            443356778889999987776543                 34566665554443222111 1112222222        


Q ss_pred             ------------CCCCEEEEEecceeEEeecCCCCce-eEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcChh
Q 018705          199 ------------KNEDFVVVCESWKRYWLKGDRAGIL-DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  265 (351)
Q Consensus       199 ------------~dg~~lyv~~~~~~~~i~~~~~~~~-~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~~  265 (351)
                                  .++..++.+..++.+.+-+...++. ..+. ........+++.++|++.++...              
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~--------------  267 (317)
T d1vyhc1         203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCAD--------------  267 (317)
T ss_dssp             GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEET--------------
T ss_pred             eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEECCCCCEEEEEEC--------------
Confidence                        3344444444444222212222221 1222 22223355788888887665433              


Q ss_pred             HHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-EEEEEecCCCeEEEE
Q 018705          266 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGIL  339 (351)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~ig~~~~~~i~~~  339 (351)
                                            .+.|..+|..+++.+..+..+.+    .++++... ++ .|..|+. .+.|..+
T Consensus       268 ----------------------dg~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~-Dg~i~iW  316 (317)
T d1vyhc1         268 ----------------------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSV-DQTVKVW  316 (317)
T ss_dssp             ----------------------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEET-TSEEEEE
T ss_pred             ----------------------CCeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCeEEEe
Confidence                                  23577778767888888876543    46777654 34 4554443 4445444

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=0.0006  Score=59.24  Aligned_cols=240  Identities=11%  Similarity=0.049  Sum_probs=126.2

Q ss_pred             CCceEEEeeCCCeEEEEEcCCE-EEEEEcCCCe---EEEEeecCCccccceEEcC--CCCEEEEeCCCCeEEEcC--CC-
Q 018705           53 HPEDVSVVVSKGALYTATRDGW-VKYFILHNET---LVNWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKVTE--EG-  123 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~-I~~~d~~~g~---~~~~~~~~~~p~~gl~~d~--~G~L~v~d~~~gl~~~~~--~g-  123 (351)
                      .|.+++++|++..+-++..+.. |..++....+   ...+......+...+++.|  +|+++++....|.++++.  .+ 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            4678999987777766655543 3334432222   2233222223333888975  566666555567777752  11 


Q ss_pred             -e---EE-----ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCccccc
Q 018705          124 -V---EA-----IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFAN  193 (351)
Q Consensus       124 -~---~~-----l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~n  193 (351)
                       .   +.     +......+++++++++|...++.+..               ..+.+..++.++++.. .+...-...+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG---------------RDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC---------------SSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeecc---------------ccceEEEEeecccccceeeeecccccc
Confidence             1   11     11112457889999999766554321               1234555555555433 3322234457


Q ss_pred             eEEEcCCCCEEEE-Eecce--eEEeecCCCCce-eEEec--cCCCCCCceEECCC-CCEEEEEecCCchhhhhhhcChhH
Q 018705          194 GIALSKNEDFVVV-CESWK--RYWLKGDRAGIL-DAFIE--NLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREK  266 (351)
Q Consensus       194 gi~~~~dg~~lyv-~~~~~--~~~i~~~~~~~~-~~~~~--~~~g~pd~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~  266 (351)
                      ++++++++..+.+ +..++  ++|-  ....+. .....  ...+....++++++ |.+.++...               
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d--~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~---------------  226 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQ--GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---------------  226 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEE--TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---------------
T ss_pred             cccccccccceEEEeeccccccccc--ccccccceecccccCCCCccEEeeeccccceecccccc---------------
Confidence            7999999875444 44344  4442  111221 11111  11122345678876 455554432               


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCCC
Q 018705          267 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  345 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~~  345 (351)
                                           .+.|..+|..+++.+..+..+...+...+.+....+|++.+.......|..+++.+..
T Consensus       227 ---------------------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         227 ---------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             ---------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ---------------------ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence                                 1347777876788888886554443333444444455444444446678888876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00012  Score=64.89  Aligned_cols=192  Identities=13%  Similarity=-0.023  Sum_probs=106.5

Q ss_pred             CCCceEEEeeCCCeEEEEEc-CCEEEEEEcCCCeEEEEeecCC--------ccccceEEcCCCCEEEEeCCCCeEEEcCC
Q 018705           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDS--------QSLLGLTTTKDGGVILCDNEKGLLKVTEE  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv~~~-~g~I~~~d~~~g~~~~~~~~~~--------~p~~gl~~d~~G~L~v~d~~~gl~~~~~~  122 (351)
                      ..|.++++++++..+|++.. ++.+..+|..+++.........        ... .+++.++|.+++.+...       .
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Dg~~~~~~~~~-------~  195 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT-HYLGSCPASLAASDLAA-------A  195 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE-EECCCCTTSCEEEECCS-------S
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce-EEEEcCCCCEEEEEecC-------C
Confidence            45889999988888998874 6889999998887654332221        112 23334455433332211       1


Q ss_pred             C--eEEecC-----CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec--------
Q 018705          123 G--VEAIVP-----DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--------  187 (351)
Q Consensus       123 g--~~~l~~-----~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------  187 (351)
                      +  ......     ....+.....+++|..+++...                   +++.++...++...+..        
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-------------------SILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-------------------CCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             ceeeeeeecccccccccceeecccccCcEEEEecCC-------------------CEEEEeecCCceEEEeeccccccee
Confidence            1  111110     1134455666667655554432                   33333333332222110        


Q ss_pred             ---C--ccccceEEEcCCCCEEEEEecce---------eEEeecCCCCceeEEeccCCCCCCceEECCCCC--EEEEEec
Q 018705          188 ---G--FYFANGIALSKNEDFVVVCESWK---------RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS--FWIGLIK  251 (351)
Q Consensus       188 ---~--~~~~ngi~~~~dg~~lyv~~~~~---------~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~--lwva~~~  251 (351)
                         .  ...+..++++++++.+|+.....         ++++.+...++..... .....+..+++++||+  +|++...
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEEETT
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEEeCC
Confidence               0  11245689999999888864332         4665544434322111 1223577899999996  5776432


Q ss_pred             CCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEEC
Q 018705          252 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  307 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  307 (351)
                                                          .+.|..+|.++||.+.++..
T Consensus       336 ------------------------------------~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         336 ------------------------------------TEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ------------------------------------TTEEEEEESSSCEEEEECCC
T ss_pred             ------------------------------------CCeEEEEECCCCCEEEEEEC
Confidence                                                13588899888999988854

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=0.0013  Score=57.00  Aligned_cols=135  Identities=9%  Similarity=-0.067  Sum_probs=82.3

Q ss_pred             EeeCCCeEEEEE-----cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCC----------CCeEEEcC-
Q 018705           59 VVVSKGALYTAT-----RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE----------KGLLKVTE-  121 (351)
Q Consensus        59 ~d~~~g~lyv~~-----~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~----------~gl~~~~~-  121 (351)
                      ..|++.++|+..     ..+.|+.+|..+++...-... +... ++++++||+ ||+++..          +.+..++. 
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            456678889865     345799999988876443333 3344 799999995 7887532          12444553 


Q ss_pred             CC--eEEecCC-------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---
Q 018705          122 EG--VEAIVPD-------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---  188 (351)
Q Consensus       122 ~g--~~~l~~~-------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---  188 (351)
                      ++  ...+...       ...|+.+++++||+ +|+.+...                ...+..++..+++.......   
T Consensus        87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP----------------APAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS----------------SCEEEEEETTTTEEEEEEECCSE
T ss_pred             CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC----------------CceeeeeecCCCcEeeEEecCCc
Confidence            45  3332211       15688999999984 67765431                23566667666654322111   


Q ss_pred             -----ccccceEEEcCCCCEEEEEecce
Q 018705          189 -----FYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       189 -----~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                           ......+++++|++.+++.....
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~  178 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTE  178 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCC
Confidence                 11234578899999887765544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.04  E-value=9.8e-05  Score=68.17  Aligned_cols=112  Identities=12%  Similarity=0.258  Sum_probs=72.0

Q ss_pred             eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCc---------cccce
Q 018705          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF---------YFANG  194 (351)
Q Consensus       124 ~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---------~~~ng  194 (351)
                      ++++++.+..|.+|++.+||+|||++..                 .|+|+++++++++.+.+..-.         ..--|
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLg   81 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLG   81 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEE
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceee
Confidence            6777777789999999999999999843                 478999998888776654321         11236


Q ss_pred             EEEcCC---CCEEEEEecc-----------e-----eEEeecCC--CCceeEEeccCCC----CCCceEECCCCCEEEEE
Q 018705          195 IALSKN---EDFVVVCESW-----------K-----RYWLKGDR--AGILDAFIENLPG----GPDNINLAPDGSFWIGL  249 (351)
Q Consensus       195 i~~~~d---g~~lyv~~~~-----------~-----~~~i~~~~--~~~~~~~~~~~~g----~pd~i~~d~~G~lwva~  249 (351)
                      |+++|+   ..++|++.+.           +     ++......  ....+.+...++.    .-..|.+++||+||++.
T Consensus        82 ia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~  161 (450)
T d1crua_          82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (450)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEe
Confidence            999985   3479987541           1     22222211  1112222222221    12358999999999998


Q ss_pred             ecC
Q 018705          250 IKM  252 (351)
Q Consensus       250 ~~~  252 (351)
                      +..
T Consensus       162 Gd~  164 (450)
T d1crua_         162 GDQ  164 (450)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=0.0032  Score=53.59  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      ++.+|  ++.|+++..||.|..||..+++.. .+........ ++++.+++.|+.+.. .+.+++.
T Consensus        18 c~~~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~-D~~i~iw   79 (355)
T d1nexb2          18 CLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGST-DRTVRVW   79 (355)
T ss_dssp             EEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEET-TCCEEEE
T ss_pred             EEEEC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEec-ccccccc
Confidence            45554  678999999999999999888753 3333345556 899987766555554 4555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.00  E-value=0.0039  Score=54.28  Aligned_cols=240  Identities=14%  Similarity=0.059  Sum_probs=122.0

Q ss_pred             CceEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEEEee--------cCCccccceEEcCCCC-EEEEeCC-
Q 018705           54 PEDVSVVVSKGALYTAT----------RDGWVKYFILHNETLVNWKH--------IDSQSLLGLTTTKDGG-VILCDNE-  113 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~~~~--------~~~~p~~gl~~d~~G~-L~v~d~~-  113 (351)
                      +.+++++|++..+|++.          .++.|..||..+++......        ....|. ++++.++|+ +++.... 
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCC-cEEEEeCCCcEEEEEEcC
Confidence            33799999888999864          35678899988887643211        123466 788888774 5554422 


Q ss_pred             CCeEEEc-CCCeEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---
Q 018705          114 KGLLKVT-EEGVEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---  188 (351)
Q Consensus       114 ~gl~~~~-~~g~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---  188 (351)
                      ...+.+. ....+.... ...+..+.+.++| .+|++...                 ++.+..++..+++.......   
T Consensus       147 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~~v~~~~-----------------dg~~~~~~~~~~~~~~~~~~~~~  208 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQL-LSSPTCYHIHPGAPSTFYLLCA-----------------QGGLAKTDHAGGAAGAGLVGAML  208 (373)
T ss_pred             CCceEEeeccCCeEEEE-eccceeEEEecCCCcEEEEEcC-----------------CCeEEEEEcCCceeeEEEeeecc
Confidence            2233332 221111111 1457788899988 46666654                 46788887766554432211   


Q ss_pred             ----ccccceEEEcCCCCEEEEEecce-e-EEeecC----------CCCceeEEeccCCCCCCceEECCCCC-EEEEEec
Q 018705          189 ----FYFANGIALSKNEDFVVVCESWK-R-YWLKGD----------RAGILDAFIENLPGGPDNINLAPDGS-FWIGLIK  251 (351)
Q Consensus       189 ----~~~~ngi~~~~dg~~lyv~~~~~-~-~~i~~~----------~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~  251 (351)
                          ...+..+..++++..++++.... . +.....          .... .......++....++..++|. +|+....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  287 (373)
T d2madh_         209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG-RKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCc-EEeeeeccCcceeeEEecCCCeEEEecCC
Confidence                11233445555554444433222 1 111110          0000 011111222334456666664 4443322


Q ss_pred             CCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEE-CC-E-EEE
Q 018705          252 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-N-LYL  328 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~-L~i  328 (351)
                      .. ...                          .......+..+|..+++.+..+....     .+..+... +| + ||+
T Consensus       288 ~~-~~~--------------------------~~~~~~~v~~~d~~t~~~~~~~~~~~-----~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         288 QS-AWK--------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPDLYA  335 (373)
T ss_pred             Cc-eEE--------------------------eecCCCeEEEEECCCCcEEEEecCCC-----CeeEEEECCCCCEEEEE
Confidence            10 000                          01222357778876777777664222     24455543 33 3 566


Q ss_pred             EecCCCeEEEEeCCCCC
Q 018705          329 ASLQSNFIGILPLDGPE  345 (351)
Q Consensus       329 g~~~~~~i~~~~~~~~~  345 (351)
                      .....+.|.++++.+-+
T Consensus       336 t~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EeCCCCeEEEEECCCCC
Confidence            66667788888876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.97  E-value=0.00085  Score=58.81  Aligned_cols=182  Identities=9%  Similarity=0.003  Sum_probs=94.3

Q ss_pred             CCCceEEEeeCCCeEEE-EEcCCEEEEEEcCCCeEEEEee-----cCCc--cccceEEcCCCCEEEEeCCCCeEEEcC-C
Q 018705           52 NHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKH-----IDSQ--SLLGLTTTKDGGVILCDNEKGLLKVTE-E  122 (351)
Q Consensus        52 ~~pe~i~~d~~~g~lyv-~~~~g~I~~~d~~~g~~~~~~~-----~~~~--p~~gl~~d~~G~L~v~d~~~gl~~~~~-~  122 (351)
                      ..|.++++.+++..+|+ ...+|.+..++..+++......     ....  +. .+..+.++.+........++.++. .
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcCC
Confidence            45778888876666664 5568888888876665433211     1111  22 344445554333333333444442 2


Q ss_pred             C-eEEecC---C----------CCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec
Q 018705          123 G-VEAIVP---D----------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE  187 (351)
Q Consensus       123 g-~~~l~~---~----------~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  187 (351)
                      + ......   .          ......++.+++|. +|+......        .+......+.+..+|..+++......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~d~~t~~~~~~~~  315 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCeEEEEECCCCcEEEEec
Confidence            2 111110   0          02344567777773 554432210        11112234578999988887655555


Q ss_pred             CccccceEEEcCCCCEE-EEEecce-eEEeecCCCCceeEEeccCCCCCCceEECCC
Q 018705          188 GFYFANGIALSKNEDFV-VVCESWK-RYWLKGDRAGILDAFIENLPGGPDNINLAPD  242 (351)
Q Consensus       188 ~~~~~ngi~~~~dg~~l-yv~~~~~-~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~  242 (351)
                      ....+++++|+|||+.+ |++.... .+.+-+...++...-.......|..+++.++
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            55678999999999864 5554333 3333232334432222223345777877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.89  E-value=0.00056  Score=60.50  Aligned_cols=141  Identities=12%  Similarity=0.102  Sum_probs=85.8

Q ss_pred             CCCceEEEee-CCC--eEEEEEc---CCE--EEEEEcCCCeEEEEee----cCCccccceEEcCCCCEEEEeCCC-----
Q 018705           52 NHPEDVSVVV-SKG--ALYTATR---DGW--VKYFILHNETLVNWKH----IDSQSLLGLTTTKDGGVILCDNEK-----  114 (351)
Q Consensus        52 ~~pe~i~~d~-~~g--~lyv~~~---~g~--I~~~d~~~g~~~~~~~----~~~~p~~gl~~d~~G~L~v~d~~~-----  114 (351)
                      ..|.+|..-. ++|  .||+-.+   ..+  |++++..+.+.+....    ....|+ .+++..+|.+|+++...     
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pN-Dv~~~~~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHFYATNDHYFIDPY  175 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEEEEEESCSCCSHH
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCcc-ceEEecCCCEEEecCccCcChh
Confidence            4688876532 234  4666554   223  4455554444443321    124588 99999999999996321     


Q ss_pred             -------------CeEEEcCCCeEEecCCCCCcccEEEccCC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCC-
Q 018705          115 -------------GLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-  179 (351)
Q Consensus       115 -------------gl~~~~~~g~~~l~~~~~~~n~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-  179 (351)
                                   .++.++....+++.+...+||+|++++|+ .+|++++.                 .++|++|+.+. 
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~-----------------~~~i~~y~~~~~  238 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL-----------------AHKIHVYEKHAN  238 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTT
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC-----------------CCeEEEEEeCCC
Confidence                         12333332255555556899999999998 69999976                 35787775432 


Q ss_pred             CeEE--EeecCccccceEEEcCCCCEEEEEecc
Q 018705          180 KETT--VLHEGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       180 ~~~~--~~~~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      +..+  ....-...|+.|.+++++..+|++...
T Consensus       239 ~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         239 WTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             SCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             cccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            2222  222334569999998644348887543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.82  E-value=0.00048  Score=60.92  Aligned_cols=67  Identities=7%  Similarity=-0.061  Sum_probs=47.6

Q ss_pred             eEEEeeCCCeEEEEE----------cCCEEEEEEcCCCeEEEEe--------ecCCccccceEEcCCC-CEEEEeCC-CC
Q 018705           56 DVSVVVSKGALYTAT----------RDGWVKYFILHNETLVNWK--------HIDSQSLLGLTTTKDG-GVILCDNE-KG  115 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~----------~~g~I~~~d~~~g~~~~~~--------~~~~~p~~gl~~d~~G-~L~v~d~~-~g  115 (351)
                      .+++.|++..+|+..          .++.|..||..+++.....        ..+..|. ++++.+|| .||+++.. +.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~-~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEECSSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc-ceEECCCCCEEEEEeCCCCe
Confidence            689998888899865          2567999999888764322        1234688 99999999 58888755 34


Q ss_pred             eEEEcC-CC
Q 018705          116 LLKVTE-EG  123 (351)
Q Consensus       116 l~~~~~-~g  123 (351)
                      +..++. ++
T Consensus       148 v~~~d~~~~  156 (368)
T d1mdah_         148 AAGLSVPGA  156 (368)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEECCCC
Confidence            555663 44

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=0.00033  Score=59.54  Aligned_cols=144  Identities=10%  Similarity=0.121  Sum_probs=86.6

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEe--ecCCccccceEEcCCCCEEEEeCCCC-eEEEcC-CC--eEE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK--HIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VEA  126 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~d~~~g-l~~~~~-~g--~~~  126 (351)
                      ...++++.+++..+.++..+|.|..+|..+++.....  .....+. .++++++++.+++....+ +..++. ++  ...
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT-SVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            4567888877778889999999999998777654332  2234556 899999997665443444 444442 33  111


Q ss_pred             ec---CCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEE-EeecCc--cccceEEEcCC
Q 018705          127 IV---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGF--YFANGIALSKN  200 (351)
Q Consensus       127 l~---~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~--~~~ngi~~~~d  200 (351)
                      ..   .....+++++++++|.+.++.+.                 +|.|..||..+++.. ......  ..+-...++++
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSL-----------------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  279 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             cccccccccccccccccccccceEEEcC-----------------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC
Confidence            11   11256788999999987776543                 467888886654321 122111  11222234456


Q ss_pred             CCEEEEEecce--eEE
Q 018705          201 EDFVVVCESWK--RYW  214 (351)
Q Consensus       201 g~~lyv~~~~~--~~~  214 (351)
                      ++.|+.+..++  ++|
T Consensus       280 ~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         280 ETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             TTEEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCEEEEE
Confidence            66565555444  666

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.79  E-value=0.0038  Score=56.71  Aligned_cols=107  Identities=7%  Similarity=-0.045  Sum_probs=64.5

Q ss_pred             CCC-CEEEEeCCC-CeEEEcC-CC--eEEecCC-CCCcccEEEccCC-cEEEEeCCCccCCcc--cccccccccCCceEE
Q 018705          103 KDG-GVILCDNEK-GLLKVTE-EG--VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTD--FYKDMAEGKPYGQLR  173 (351)
Q Consensus       103 ~~G-~L~v~d~~~-gl~~~~~-~g--~~~l~~~-~~~~n~l~~d~dG-~ly~t~~~~~~~~~~--~~~~~~~~~~~g~l~  173 (351)
                      +|| .|||++... .+.+++. ++  .+++.-+ ...|.++++++|| +.|+..... +....  ....+........+.
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEE
Confidence            678 589998765 4566664 55  3333222 2689999999999 578876431 11100  000000111122456


Q ss_pred             EEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecc
Q 018705          174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (351)
Q Consensus       174 ~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~  210 (351)
                      .+|+.+.++.........|.++++++||+++|++..+
T Consensus       160 ~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         160 AIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             eecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence            6888877664433334578999999999999998754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.00067  Score=60.50  Aligned_cols=131  Identities=17%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE-EEee------cCCccccceEEcCCCCEEEEeCCC---CeEEEc--C
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKH------IDSQSLLGLTTTKDGGVILCDNEK---GLLKVT--E  121 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~-~~~~------~~~~p~~gl~~d~~G~L~v~d~~~---gl~~~~--~  121 (351)
                      ..++++. .++.+.++..||.|..||..+++.. .+..      ...... .+++.++|+++++....   +++++.  .
T Consensus       187 ~~~v~~s-~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         187 ATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCEEEEC-TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEEC-CCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeecccc
Confidence            5678998 4678889999999999999877643 2221      122345 89999999877764332   345654  3


Q ss_pred             CC--eEEecCC-------------CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee
Q 018705          122 EG--VEAIVPD-------------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (351)
Q Consensus       122 ~g--~~~l~~~-------------~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  186 (351)
                      +|  +..+...             ...+++++++|||++.++.+.                 ++.|..||.++|+.....
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----------------D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----------------CCEEEEEECCCCCEEEEE
Confidence            45  4444211             146888999999998888765                 578999999888765443


Q ss_pred             cCc-----cccceEEEcCCCCE
Q 018705          187 EGF-----YFANGIALSKNEDF  203 (351)
Q Consensus       187 ~~~-----~~~ngi~~~~dg~~  203 (351)
                      .+-     .....++++++++.
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCB
T ss_pred             CCcCCcccCCccEEEECCCCCE
Confidence            321     12345778888873

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.35  E-value=0.029  Score=46.28  Aligned_cols=86  Identities=15%  Similarity=-0.018  Sum_probs=53.8

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-E-EEEeCCC-----CeEEEcC-CC-eEEecCCC--
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDNEK-----GLLKVTE-EG-VEAIVPDA--  131 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L-~v~d~~~-----gl~~~~~-~g-~~~l~~~~--  131 (351)
                      +..+.. +.+|.||.+|..+|+.+.+....+... +.++.+||+ | |+.....     .++.++. .| .+.+....  
T Consensus        12 G~~v~f-~~~~dl~~~d~~~g~~~~Lt~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~   89 (281)
T d1k32a2          12 GDRIIF-VCCDDLWEHDLKSGSTRKIVSNLGVIN-NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK   89 (281)
T ss_dssp             TTEEEE-EETTEEEEEETTTCCEEEEECSSSEEE-EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             CCEEEE-EeCCcEEEEECCCCCEEEEecCCCccc-CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence            554422 245679999998888877766555556 788999996 4 3333221     3667775 45 55553321  


Q ss_pred             -----CCcccEEEccCCc-EEEEeC
Q 018705          132 -----SFTNDVIAASDGT-LYFTVA  150 (351)
Q Consensus       132 -----~~~n~l~~d~dG~-ly~t~~  150 (351)
                           .......+++||+ |+++..
T Consensus        90 ~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          90 STGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECT
T ss_pred             ccCccccccccccCCCCCEEEEEEc
Confidence                 3456678999995 666654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.046  Score=44.86  Aligned_cols=168  Identities=13%  Similarity=0.045  Sum_probs=81.6

Q ss_pred             EEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCC---CeEEEcCC-C-eEEecCCCCCcccEEEccCCcEE-
Q 018705           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTEE-G-VEAIVPDASFTNDVIAASDGTLY-  146 (351)
Q Consensus        74 ~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~---gl~~~~~~-g-~~~l~~~~~~~n~l~~d~dG~ly-  146 (351)
                      +|+.+|.+++..+.+........ ..++.|||+ |.++....   .++.++.+ + .+.+............++||..+ 
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~-sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCcee-eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777764444444443333334 677889995 43333222   35555543 3 44444433455666788888533 


Q ss_pred             EEeC-CCccCC-------cc---------c-cc---------ccccc--cCCceEEEEeCCCCeEEEeecCccccceEEE
Q 018705          147 FTVA-STKYTP-------TD---------F-YK---------DMAEG--KPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (351)
Q Consensus       147 ~t~~-~~~~~~-------~~---------~-~~---------~~~~~--~~~g~l~~~d~~~~~~~~~~~~~~~~ngi~~  197 (351)
                      +... ......       ..         . ..         ..+..  .....++.++.+++....+...........+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  178 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccc
Confidence            2211 100000       00         0 00         00111  1122567777666554444333333345678


Q ss_pred             cCCCCEEEEEecce---eEEeecCCCCceeEEeccCCCCCCceEECCCCC
Q 018705          198 SKNEDFVVVCESWK---RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  244 (351)
Q Consensus       198 ~~dg~~lyv~~~~~---~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~  244 (351)
                      +|+++.+++....+   .+++.+...+..+....  .+.-....+++||+
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS--TFLDETPSLAPNGT  226 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC--SSSCEEEEECTTSS
T ss_pred             ccccceeEEEeecCCceeeeEeecccccceEeec--CccccceEECCCCC
Confidence            99999666654433   45544433333333321  22223458899997

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.76  E-value=0.03  Score=50.02  Aligned_cols=201  Identities=13%  Similarity=0.080  Sum_probs=109.5

Q ss_pred             cCCCcCCCceEEEee---CCCeEEEEE-cCCEEEEEEcCCCeEEEEeec--CCccccceEEcCCC-CEEEEeCCCC----
Q 018705           47 GEGCVNHPEDVSVVV---SKGALYTAT-RDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDG-GVILCDNEKG----  115 (351)
Q Consensus        47 ~~~~~~~pe~i~~d~---~~g~lyv~~-~~g~I~~~d~~~g~~~~~~~~--~~~p~~gl~~d~~G-~L~v~d~~~g----  115 (351)
                      .-|....| .+.+..   ++..+|+.. .++||.++|.++-+...+...  ...++ |++..+++ ..||.....-    
T Consensus        81 ~~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~  158 (459)
T d1fwxa2          81 DNGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPL  158 (459)
T ss_dssp             CCCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEES
T ss_pred             cCCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCcccccc
Confidence            34566777 454441   355688866 588999999988887655433  34577 88887665 4566542221    


Q ss_pred             ----------------eEEEcC-CC---eEEecCCCCCcccEEEccCCc-EEEEeCCCccCC---------cccc--cc-
Q 018705          116 ----------------LLKVTE-EG---VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTP---------TDFY--KD-  162 (351)
Q Consensus       116 ----------------l~~~~~-~g---~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~---------~~~~--~~-  162 (351)
                                      +..++. +.   .++...  ..+.++.+++||+ +|+|+..+.-..         .++.  +. 
T Consensus       159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             CCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence                            122332 12   111112  5688999999996 566542211000         0000  00 


Q ss_pred             -----cc-cc--cCCceEEEEeCCCC---eEEEeecCccccceEEEcCCCCEEEEEecce----eEEee-------cCCC
Q 018705          163 -----MA-EG--KPYGQLRKYDPKLK---ETTVLHEGFYFANGIALSKNEDFVVVCESWK----RYWLK-------GDRA  220 (351)
Q Consensus       163 -----~~-~~--~~~g~l~~~d~~~~---~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~----~~~i~-------~~~~  220 (351)
                           .. .+  ...+++-..|+...   .+..+......|+|+.++|||+++|++.-..    .|.+.       +...
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~  316 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  316 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCC
Confidence                 00 00  01134556665421   2222333446799999999999999987544    45543       1111


Q ss_pred             CceeEEec-cCCCCCCceEECCCCCEEEEEec
Q 018705          221 GILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  251 (351)
Q Consensus       221 ~~~~~~~~-~~~g~pd~i~~d~~G~lwva~~~  251 (351)
                      -+..+..+ ++.-.|--.++|.+|+.|.+.+.
T Consensus       317 ~~~~~~~e~elglgPLht~fd~~g~aytslfi  348 (459)
T d1fwxa2         317 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  348 (459)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             ccccEEeecccCcCccccccCCCceEEEEeec
Confidence            11112222 12223555689999999999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.11  Score=42.69  Aligned_cols=128  Identities=14%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCC-EEEEeCCCCeEEEcC-CC---eEEe
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG---VEAI  127 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~d~~~gl~~~~~-~g---~~~l  127 (351)
                      .|..+++. .++.+++...++.+..++..+++.........  . ..++.++++ +.++....+.+++.. ..   ...+
T Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          82 QPKVASAN-NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS--P-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             CEEEEEEC-SSSEEEEEETTSEEEEEETTTCCEEEEEECSS--C-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             ceeeeeec-cCCceEEEeecccceeeeccceeeeeeccccc--e-eeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence            46677777 56777777777888888877766543322222  2 344455554 455554445555552 32   2222


Q ss_pred             cCC-CCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEcCCC
Q 018705          128 VPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (351)
Q Consensus       128 ~~~-~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg  201 (351)
                      ... ...+.+++++++|...++...                 +|.|..||..+++.....  ......+.++++|++
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~~-----------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~  217 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGDV-----------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE  217 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred             eeccCCceeEEEeccCccccccccc-----------------cccccceeecccccccccccccccccceeeecccc
Confidence            222 256788999999976555443                 467889998777653321  112234567776644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.16  Score=41.96  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             cCCceEEEEeCCCCeEEEeecC-ccccceEEEcCCCCEEEEEecce--eEEeecCCCCceeEEeccCCCCCCc-eEECCC
Q 018705          167 KPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWK--RYWLKGDRAGILDAFIENLPGGPDN-INLAPD  242 (351)
Q Consensus       167 ~~~g~l~~~d~~~~~~~~~~~~-~~~~ngi~~~~dg~~lyv~~~~~--~~~i~~~~~~~~~~~~~~~~g~pd~-i~~d~~  242 (351)
                      ..+|.|..||..+++....... .....  +++++++.++.+..++  ++|-.. .......+. ........ .++..+
T Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         194 SLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVKIWDIK-TGQCLQTLQ-GPNKHQSAVTCLQFN  269 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCSCEE--EEEEETTEEEEEETTSCEEEEETT-TCCEEEEEC-STTSCSSCEEEEEEC
T ss_pred             eCCCeEEEeecccceeeeEeccccccee--EEecCCCEEEEEcCCCEEEEEecc-ccccccccc-ccceeeeceeecccC
Confidence            3467788998876664332222 22233  3444556666666655  444221 111222222 11111122 234445


Q ss_pred             CCEEEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEEC-CCCCcccceeEEEE
Q 018705          243 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAE  321 (351)
Q Consensus       243 G~lwva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~  321 (351)
                      +++.++...                                    .+.|..+|.++|+.+..+.. ..+.....++++..
T Consensus       270 ~~~~~s~s~------------------------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         270 KNFVITSSD------------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             SSEEEEEET------------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CCeeEEEcC------------------------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            666665432                                    24677788768898888753 22223345777777


Q ss_pred             ECCEEEEEecCCC-----eEEEEeCCC
Q 018705          322 FDGNLYLASLQSN-----FIGILPLDG  343 (351)
Q Consensus       322 ~~g~L~ig~~~~~-----~i~~~~~~~  343 (351)
                      ..+..++.+...+     +|..+++..
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            6655554443333     478877754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.091  Score=43.22  Aligned_cols=152  Identities=13%  Similarity=0.029  Sum_probs=78.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCE-EEEEEcCCCeEEEEe--ecCCccccceEEcCCCCEEE-EeCCCCeEEEcC-CC-eEE-
Q 018705           54 PEDVSVVVSKGALYTATRDGW-VKYFILHNETLVNWK--HIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVTE-EG-VEA-  126 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~-I~~~d~~~g~~~~~~--~~~~~p~~gl~~d~~G~L~v-~d~~~gl~~~~~-~g-~~~-  126 (351)
                      ....++.+.+..+.++..+++ +..++..+.+.....  .....+. .++++++|..++ ++..+.+..++. ++ ... 
T Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS-YISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCcee-EEEeccCccccccccccccccceeecccccccc
Confidence            344566666778888888764 666665333322211  1223455 899999997554 554444444443 44 222 


Q ss_pred             -ecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCC-Ce-EEEeecCccccceEEEcCCCCE
Q 018705          127 -IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDF  203 (351)
Q Consensus       127 -l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~-~~~~~~~~~~~ngi~~~~dg~~  203 (351)
                       +......++++++.|++.........       ..-+..+..++.|+.||..+ ++ ++.+.......+++++++++. 
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~-------~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-  271 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIE-------EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-  271 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCS-------CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred             cccccccccceeeecccccccccccCC-------CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-
Confidence             11112557778887766432221110       00112233467788898654 32 222222234567889998874 


Q ss_pred             EEEEecce--eEE
Q 018705          204 VVVCESWK--RYW  214 (351)
Q Consensus       204 lyv~~~~~--~~~  214 (351)
                      ++-+..++  ++|
T Consensus       272 l~s~g~D~~v~iW  284 (287)
T d1pgua2         272 LVSSGADACIKRW  284 (287)
T ss_dssp             EEEEETTSCEEEE
T ss_pred             EEEEECCCeEEEE
Confidence            55555554  666

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.33  E-value=0.33  Score=43.22  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=43.9

Q ss_pred             CCceEEEeeCCCeEEEEE---------cCCEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEEEeCCCCeEEEcC
Q 018705           53 HPEDVSVVVSKGALYTAT---------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~---------~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~  121 (351)
                      ...++.++|++..|..+.         ..+.++.+|.++++...+........ ...+.+||..++......++..+.
T Consensus        63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~-~~~~SPDG~~ia~~~~~~l~~~~~  139 (470)
T d2bgra1          63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIE  139 (470)
T ss_dssp             CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESS
T ss_pred             ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccc-ccccccCcceeeEeecccceEEEC
Confidence            456889998777665543         24668889998887766554444445 677788886444433445666653

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.33  E-value=0.07  Score=41.94  Aligned_cols=146  Identities=14%  Similarity=0.070  Sum_probs=87.8

Q ss_pred             ccCceEecCCCcCCCceEEEeeCCCeEEEEEcCCEEEEEEcCCCe-------EEEEeecCCccccceEEcCCCCEEEEeC
Q 018705           40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-------LVNWKHIDSQSLLGLTTTKDGGVILCDN  112 (351)
Q Consensus        40 l~~~~~i~~~~~~~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~-------~~~~~~~~~~p~~gl~~d~~G~L~v~d~  112 (351)
                      +..+.++..+.+..-.-|+++ .+|.||.-.. +++|+=.+.+-.       .+.+.....+-..-+.|||+|-||++..
T Consensus        28 ~~rA~~lGk~g~~n~~~i~fs-P~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~  105 (235)
T d1tl2a_          28 LARATLIGKGGWSNFKFLFLS-PGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK  105 (235)
T ss_dssp             HHHSEEEESSSCTTCSEEEEC-TTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET
T ss_pred             cchhhhcCcccccceeEEEEC-CCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecC
Confidence            455677777656666679999 4788887554 467765432221       1222222222221578999999999985


Q ss_pred             CCCeEEEcC-CC--------eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCe-
Q 018705          113 EKGLLKVTE-EG--------VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-  181 (351)
Q Consensus       113 ~~gl~~~~~-~g--------~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-  181 (351)
                       ..+++-.+ +.        ...+.... +...-|.+||+|.||...+.                   ++++-.|.++. 
T Consensus       106 -~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-------------------~l~k~~pP~~~~  165 (235)
T d1tl2a_         106 -DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-------------------QFYKALPPVSNQ  165 (235)
T ss_dssp             -TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-------------------EEEEECCCSSTT
T ss_pred             -cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-------------------cEEEcCCCCCCC
Confidence             57888773 32        22222221 45557889999999977543                   46666554332 


Q ss_pred             ------EEEee-cCccccceEEEcCCCCEEEEEe
Q 018705          182 ------TTVLH-EGFYFANGIALSKNEDFVVVCE  208 (351)
Q Consensus       182 ------~~~~~-~~~~~~ngi~~~~dg~~lyv~~  208 (351)
                            -+.+. ..-..+..|.|+|||+ ||-..
T Consensus       166 d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~  198 (235)
T d1tl2a_         166 DNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ  198 (235)
T ss_dssp             CCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE
T ss_pred             chhhhhhhhhccCcccCceEEEECCCCc-EEEEe
Confidence                  12233 2334567899999998 65553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.23  Score=40.97  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             EeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           59 VVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        59 ~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      ++++++.|.++..||.|..||..+++... +........ .+++.++  ++++....+.+++.
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~-~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-SSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-EEEEETT--EEEEEETTSCEEEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEE-EEEeCCC--ccccceeccccccc
Confidence            44457888999999999999998887643 333334455 7777643  44444445566665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.11  Score=45.36  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=40.5

Q ss_pred             CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeec-------CccccceEEEcCCCCEE
Q 018705          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-------GFYFANGIALSKNEDFV  204 (351)
Q Consensus       132 ~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------~~~~~ngi~~~~dg~~l  204 (351)
                      ..++.+++++||.| ++.+.                 ++.|..||..+++......       .....+.++++|||+.|
T Consensus       185 ~~~~~v~~s~dg~l-asgs~-----------------Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         185 QFATSVDISERGLI-ATGFN-----------------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCCCEEEECTTSEE-EEECT-----------------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             CcEEEEEECCCCEE-EEEeC-----------------CCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence            45778999999833 44433                 5679999988776432221       12245789999999977


Q ss_pred             EEEecc
Q 018705          205 VVCESW  210 (351)
Q Consensus       205 yv~~~~  210 (351)
                      ..+..+
T Consensus       247 ~sgs~D  252 (393)
T d1sq9a_         247 AIAHDS  252 (393)
T ss_dssp             EEEEEE
T ss_pred             eeecCC
Confidence            766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.073  Score=44.08  Aligned_cols=138  Identities=13%  Similarity=0.101  Sum_probs=75.2

Q ss_pred             eEEEeeCCCeEEEEEcCCEEEEEEcCCCeEE---EEe-ecCCccccceEEc-CCCCEEEEeCCCCeEEEc---CCC----
Q 018705           56 DVSVVVSKGALYTATRDGWVKYFILHNETLV---NWK-HIDSQSLLGLTTT-KDGGVILCDNEKGLLKVT---EEG----  123 (351)
Q Consensus        56 ~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~---~~~-~~~~~p~~gl~~d-~~G~L~v~d~~~gl~~~~---~~g----  123 (351)
                      ...+.+....+.++..+|.|..++...++..   ... ....... ..... .++..+++....+.+.+.   ...    
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccccccee-eeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            4455556778888999999999987544321   111 1111111 22222 233333333333333322   100    


Q ss_pred             ---eEEecC---------CCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecCccc
Q 018705          124 ---VEAIVP---------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF  191 (351)
Q Consensus       124 ---~~~l~~---------~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  191 (351)
                         ...+..         ....+++++++|+|.+++|.+.                 +|.|..||..+++..........
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~  294 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNE  294 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSS
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCC
Confidence               111100         0145678999999987777654                 57899999887764332222333


Q ss_pred             cceEEEcCCCCEEEEEecce
Q 018705          192 ANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       192 ~ngi~~~~dg~~lyv~~~~~  211 (351)
                      ..-++++++++.+.++....
T Consensus       295 ~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         295 DSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             SEEEEEEECSSEEEEEEECT
T ss_pred             CEEEEEEeCCCEEEEEEcCC
Confidence            44588999999777765443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.86  E-value=0.098  Score=46.87  Aligned_cols=104  Identities=12%  Similarity=0.042  Sum_probs=62.1

Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEcC-CC-eEEecCCC------CCcccEEEccCCc-EEEEeCCCccCCcccccccccccC
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDA------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP  168 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~~-~g-~~~l~~~~------~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~  168 (351)
                      .+..-+++.++..+ .+.++.++. +| .+.+....      ..+.++.++|||+ |.++....         .++....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~---------~~~r~s~   90 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV---------KQWRHSY   90 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE---------ECSSSCE
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc---------ceeeecc
Confidence            45555666654444 456777774 56 44443321      4578899999996 44332110         1111122


Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      .+.++.||.++++...+...-.....+.+||||+.+.+....+
T Consensus        91 ~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~  133 (470)
T d2bgra1          91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNND  133 (470)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTE
T ss_pred             CceEEEEECCCCcccccccCCccccccccccCcceeeEeeccc
Confidence            4679999999988765544334455678999999666654343

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.70  E-value=0.44  Score=39.33  Aligned_cols=233  Identities=11%  Similarity=0.060  Sum_probs=115.1

Q ss_pred             CCceEEEeeCCCeEEEEEcCCEEEEEEcCCCeEEEEeecCCcc--ccceEEcCCCCEEEEeCCCCeEEEcC--CC--eEE
Q 018705           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQS--LLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEA  126 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p--~~gl~~d~~G~L~v~d~~~gl~~~~~--~g--~~~  126 (351)
                      .-.++++. .++.++++..||.|..++....+...........  .......+++...++....+.+++..  ++  ...
T Consensus        55 ~V~~l~~s-~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEE-TTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEc-CCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            34688998 5788899999999999998666543322211111  10233445665555444445555541  22  111


Q ss_pred             ecCC----------CCC----------ccc-EEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe
Q 018705          127 IVPD----------ASF----------TND-VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (351)
Q Consensus       127 l~~~----------~~~----------~n~-l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  185 (351)
                      ....          ...          ... ....++|++.++                 +..++.+..||..+++....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS-----------------GSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE-----------------EETTSCEEEEETTTTEEEEE
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeee-----------------ecccceeeeeecccccceee
Confidence            1000          000          000 112223332222                 22346788888877665433


Q ss_pred             ec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCceeEEeccCCCCCCceEECCCCCEEEEEecCCchhhhhhhcCh
Q 018705          186 HE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  264 (351)
Q Consensus       186 ~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~lwva~~~~~~~~~~~~~~~~  264 (351)
                      .. .......+.++++++.++.+..++.+.+-+...+..........+....+.++  +++.++...             
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~-------------  261 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA-------------  261 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECT-------------
T ss_pred             eeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeec-------------
Confidence            32 33445678899999977777666622222222222221111222223345554  454444322             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEecCCCeEEEEeCCCC
Q 018705          265 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  344 (351)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~~~~~i~~~~~~~~  344 (351)
                                             .+.|..+|..+++....++....   ..+ .....++++.+++. .+.|..+++++-
T Consensus       262 -----------------------dg~i~iwd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~l~~g~-d~~i~vwd~~tg  313 (355)
T d1nexb2         262 -----------------------DGSIRGWDANDYSRKFSYHHTNL---SAI-TTFYVSDNILVSGS-ENQFNIYNLRSG  313 (355)
T ss_dssp             -----------------------TSEEEEEETTTCCEEEEEECTTC---CCC-CEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             -----------------------ccccccccccccceecccccCCc---eEE-EEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence                                   24567778755555555554221   112 22334566666654 677888888764


Q ss_pred             CC
Q 018705          345 EP  346 (351)
Q Consensus       345 ~~  346 (351)
                      +.
T Consensus       314 ~~  315 (355)
T d1nexb2         314 KL  315 (355)
T ss_dssp             CB
T ss_pred             CE
Confidence            43

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.46  E-value=0.49  Score=38.23  Aligned_cols=85  Identities=14%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             CeEEEcC-CC-eEEecCCCCCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEeecC---
Q 018705          115 GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---  188 (351)
Q Consensus       115 gl~~~~~-~g-~~~l~~~~~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---  188 (351)
                      .|+.++. .| .+.+........+.+++|||. |.++.....            ......|+.++..+++.+.+...   
T Consensus        22 dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~------------~~~~~~i~~~~~~~g~~~~lt~~~~~   89 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS------------SLNTADLYFYNGENGEIKRITYFSGK   89 (281)
T ss_dssp             EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST------------TCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC------------CCCceEEEEEEecCCceEEeeecCCC
Confidence            4555553 34 555654434556678999994 655432100            01124699999988887766422   


Q ss_pred             ----ccccceEEEcCCCCEEEEEecce
Q 018705          189 ----FYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       189 ----~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                          .......+++|||+.++++....
T Consensus        90 ~~~~~~~~~~~~~spdg~~l~~~~~~~  116 (281)
T d1k32a2          90 STGRRMFTDVAGFDPDGNLIISTDAMQ  116 (281)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTS
T ss_pred             ccCccccccccccCCCCCEEEEEEccC
Confidence                12345678999999888876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.57  Score=38.21  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             CceEEEeeCCCeEEEEEcCCEEEEEEcCCCe--EE--EEeecCCccccceEEcCCC-CEEEEeCCCCeEEEc
Q 018705           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--LV--NWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT  120 (351)
Q Consensus        54 pe~i~~d~~~g~lyv~~~~g~I~~~d~~~g~--~~--~~~~~~~~p~~gl~~d~~G-~L~v~d~~~gl~~~~  120 (351)
                      -.+|+|+|++..|.+++.||.|..||..+++  .+  .......... .+++.+++ .++++....+.+++.
T Consensus        14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeee
Confidence            3689999888889999999999888864432  11  1112233445 88887665 444443344555555

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.93  E-value=0.32  Score=38.10  Aligned_cols=130  Identities=12%  Similarity=0.032  Sum_probs=73.5

Q ss_pred             ceEEcCCCCEEEEeCCCCeEEEcC-C----C----eEEecCCC-CCcccEEEccCCcEEEEeCCCccCCccccccccccc
Q 018705           98 GLTTTKDGGVILCDNEKGLLKVTE-E----G----VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (351)
Q Consensus        98 gl~~d~~G~L~v~d~~~gl~~~~~-~----g----~~~l~~~~-~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  167 (351)
                      -|+++++|+||....+ .+|+=.. .    .    .+.+.... +...-+.+||+|-||...++                
T Consensus        44 ~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~~----------------  106 (235)
T d1tl2a_          44 FLFLSPGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKD----------------  106 (235)
T ss_dssp             EEEECTTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETT----------------
T ss_pred             EEEECCCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecCc----------------
Confidence            4889999999988755 4554332 1    1    12233332 56677899999999976643                


Q ss_pred             CCceEEEEeCCCCeEE-------Eeec-CccccceEEEcCCCCEEEEEecceeEEeecCCCCc-------eeEEeccCCC
Q 018705          168 PYGQLRKYDPKLKETT-------VLHE-GFYFANGIALSKNEDFVVVCESWKRYWLKGDRAGI-------LDAFIENLPG  232 (351)
Q Consensus       168 ~~g~l~~~d~~~~~~~-------~~~~-~~~~~ngi~~~~dg~~lyv~~~~~~~~i~~~~~~~-------~~~~~~~~~g  232 (351)
                         .||+=.|-+.+.+       .+.. +...-.-+-|+|+|. ||..+.++ +....+..++       .+.+....-.
T Consensus       107 ---~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~~~-l~k~~pP~~~~d~WL~~st~igr~~w~  181 (235)
T d1tl2a_         107 ---KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHGQQ-FYKALPPVSNQDNWLARATKIGQGGWD  181 (235)
T ss_dssp             ---EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEETTE-EEEECCCSSTTCCHHHHCEEEESSSGG
T ss_pred             ---ceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEECCc-EEEcCCCCCCCchhhhhhhhhccCccc
Confidence               5666655443321       1211 112223477899997 88876665 2211111111       1222211112


Q ss_pred             CCCceEECCCCCEEEEE
Q 018705          233 GPDNINLAPDGSFWIGL  249 (351)
Q Consensus       233 ~pd~i~~d~~G~lwva~  249 (351)
                      .+..+.+.++|+||-..
T Consensus       182 ~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         182 TFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             GEEEEEECTTSCEEEEE
T ss_pred             CceEEEECCCCcEEEEe
Confidence            34568899999998874

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.89  E-value=0.7  Score=36.91  Aligned_cols=120  Identities=21%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             CceEEEEeCCCCeEEEeecCccccceEEEcCCCCEEEEEecce---eEEee-cCCCCceeEEeccCCC------CCCceE
Q 018705          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK---RYWLK-GDRAGILDAFIENLPG------GPDNIN  238 (351)
Q Consensus       169 ~g~l~~~d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~---~~~i~-~~~~~~~~~~~~~~~g------~pd~i~  238 (351)
                      .|.+-.++|+.|.+...          ...++.+ + +++..+   .||+. +...++.+..  ++|+      -|-.|.
T Consensus       176 SG~lri~tpkeGS~~~a----------y~~~gnK-V-~sdyEt~gEsywit~D~~s~~yerv--e~P~kd~~sy~p~~I~  241 (313)
T d2hu7a1         176 SGGLRVFDSGEGSFSSA----------SISPGMK-V-TAGLETAREARLVTVDPRDGSVEDL--ELPSKDFSSYRPTAIT  241 (313)
T ss_dssp             TEEEEEECCSSEEEEEE----------EECTTSC-E-EEEEEESSCEEEEEECTTTCCEEEC--CCSSCHHHHHCCSEEE
T ss_pred             cCCEEEecCCCCcccce----------eEccCce-e-eeccCCCCceEEEEEecccCceeee--ecCcccceeecceEEE
Confidence            46788888876655432          2345555 3 555444   68874 3333343322  2332      244554


Q ss_pred             ---ECCCCCE-EEEEecCCchhhhhhhcChhHHHHHHhccchhhcccCCCCCCceEEEEEECCCCeEEEEEECCCCCccc
Q 018705          239 ---LAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYIS  314 (351)
Q Consensus       239 ---~d~~G~l-wva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~  314 (351)
                         .|+|++| .++--.++                                     --.|.  +|+.+.   .|.|    
T Consensus       242 ~~~Y~Pdd~L~iiakrdG~-------------------------------------s~lF~--nGk~in---~p~G----  275 (313)
T d2hu7a1         242 WLGYLPDGRLAVVARREGR-------------------------------------SAVFI--DGERVE---APQG----  275 (313)
T ss_dssp             EEEECTTSCEEEEEEETTE-------------------------------------EEEEE--TTEEEC---CCSS----
T ss_pred             eeeeCCCCcEEEEEecCCc-------------------------------------hheee--cceEec---CCCC----
Confidence               7899987 55543322                                     22233  677653   4554    


Q ss_pred             ceeEEEEECCEEEEEecCCCeEE-EEeCCCCCCCC
Q 018705          315 FVTSAAEFDGNLYLASLQSNFIG-ILPLDGPEPQL  348 (351)
Q Consensus       315 ~~~~~~~~~g~L~ig~~~~~~i~-~~~~~~~~~~~  348 (351)
                      .++.+..-++++|++...-..=. ...++.-+|++
T Consensus       276 ~~~gat~i~~~iyfshsSL~tP~kI~~~~~~~~~~  310 (313)
T d2hu7a1         276 NHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLL  310 (313)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             cccceEEECCEEEEeecccCCCceeEEcCCCCccc
Confidence            46677778899998754332222 23466667654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.89  E-value=1.4  Score=40.40  Aligned_cols=108  Identities=12%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeec------------CCccccceEEcCCCCEEEEeCCCCeEEEcC-CC--eEEe
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHI------------DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~------------~~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g--~~~l  127 (351)
                      +|.+|+++.+++|+.+|.++|+.. |...            ......+++.. ++++|+.+....++.++. +|  +-..
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~l-W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEE-EEECCCCCccccccccccccccCccee-CCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            789999999999999999999763 3210            00011133332 457888888888999995 77  2222


Q ss_pred             cCC-C---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          128 VPD-A---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       128 ~~~-~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      ... .   .....--+-.+|.+++......            ....|.|.-||..||+..-
T Consensus       144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred             CccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEEe
Confidence            211 1   1111111112555666543311            1224678888888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.99  Score=36.16  Aligned_cols=53  Identities=11%  Similarity=0.058  Sum_probs=36.2

Q ss_pred             eEEEeeCCCeE-EEEEcC--CEEEEEEcCCCeEEEEeecCCccccceEEcCCCCEEE
Q 018705           56 DVSVVVSKGAL-YTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVIL  109 (351)
Q Consensus        56 ~i~~d~~~g~l-yv~~~~--g~I~~~d~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v  109 (351)
                      +.+|+|++..| |+....  ..++.++..++..+.......... ...++++|..++
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~i~   98 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLA   98 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-cceecCCCCeee
Confidence            77899888776 554433  357888877776666665556666 777888886443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.12  E-value=1.5  Score=37.63  Aligned_cols=81  Identities=16%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             eEEEEeCCCCeEEEeec-------CccccceEEE--cCC-CC-EEEEEecce---eEEeecCCCCce--eEEe-ccCCCC
Q 018705          171 QLRKYDPKLKETTVLHE-------GFYFANGIAL--SKN-ED-FVVVCESWK---RYWLKGDRAGIL--DAFI-ENLPGG  233 (351)
Q Consensus       171 ~l~~~d~~~~~~~~~~~-------~~~~~ngi~~--~~d-g~-~lyv~~~~~---~~~i~~~~~~~~--~~~~-~~~~g~  233 (351)
                      .+|.+|+..+.++.+..       .+..+.|+|+  +++ |. .+++++..+   .|++.....+..  +... -.++..
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            36777777666654432       2345789999  554 44 344455444   455643222222  1111 134555


Q ss_pred             CCceEECCC-CCEEEEEec
Q 018705          234 PDNINLAPD-GSFWIGLIK  251 (351)
Q Consensus       234 pd~i~~d~~-G~lwva~~~  251 (351)
                      +-|+++|++ ++||++...
T Consensus       182 ~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             EEEEEEETTTTEEEEEETT
T ss_pred             cceEEEeCCCCcEEEecCc
Confidence            678888876 579999654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.07  E-value=2.2  Score=39.15  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecC------------C-ccccceEEcCCCCEEEEeCCCCeEEEcC-CCeEEe-
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHID------------S-QSLLGLTTTKDGGVILCDNEKGLLKVTE-EGVEAI-  127 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~------------~-~p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g~~~l-  127 (351)
                      +|.+|+++.+++|+.+|.++|+.. |....            . ... ++++. ++++|+++....++.++. +|.... 
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~-W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeE-EEeCCCCCcccccccccccccc-cceEE-CCcEEEEecccceeeeccccccceec
Confidence            689999999999999999999763 32110            0 012 44443 668899888888999995 772221 


Q ss_pred             ---cCCC---CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          128 ---VPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       128 ---~~~~---~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                         ....   ....+--+-.++.+++......            ....|.|.-||.+||+..-
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred             ccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCcccee
Confidence               1111   1111111223566776554311            1234678888888887643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.11  E-value=3.1  Score=37.93  Aligned_cols=62  Identities=16%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec---------------------CCCeEEEEeCCCC
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL---------------------QSNFIGILPLDGP  344 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~---------------------~~~~i~~~~~~~~  344 (351)
                      ...+.+..||.++||++=++..+.+.....  .....+|+-||.-.                     .++.|..|.|++.
T Consensus       476 ~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~  553 (560)
T d1kv9a2         476 TAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK  553 (560)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred             CCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCC
Confidence            445678999999999998888766532222  23356888887532                     2357999999999


Q ss_pred             CCCCC
Q 018705          345 EPQLA  349 (351)
Q Consensus       345 ~~~~~  349 (351)
                      ++..+
T Consensus       554 ~~~~~  558 (560)
T d1kv9a2         554 AQLPP  558 (560)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=93.00  E-value=2.1  Score=37.29  Aligned_cols=98  Identities=6%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             CCCceEEEeeCC-CeEEEEEcCCEEEEEEcCCCeEEEEeec-------CCccccceEEcCC--CCEEEEeCC------CC
Q 018705           52 NHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHI-------DSQSLLGLTTTKD--GGVILCDNE------KG  115 (351)
Q Consensus        52 ~~pe~i~~d~~~-g~lyv~~~~g~I~~~d~~~g~~~~~~~~-------~~~p~~gl~~d~~--G~L~v~d~~------~g  115 (351)
                      ..-.+|+++|.+ +.+|++...|+|+|-+-....++.+...       ..... .|++|++  .++|++...      .+
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            345689999865 6789999888899877533345543211       11234 6889976  378887632      24


Q ss_pred             eEEEcCCC--eEEecCCC---------CCcccEEEccCC--cEEEEeC
Q 018705          116 LLKVTEEG--VEAIVPDA---------SFTNDVIAASDG--TLYFTVA  150 (351)
Q Consensus       116 l~~~~~~g--~~~l~~~~---------~~~n~l~~d~dG--~ly~t~~  150 (351)
                      +++=...|  .+.+....         .....|+++|..  .+|+...
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~  138 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR  138 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc
Confidence            44433344  33332211         234568888853  6787653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.66  Score=41.65  Aligned_cols=87  Identities=5%  Similarity=-0.108  Sum_probs=47.2

Q ss_pred             CCCeEEEcC-CC-eEEecCCC----CCcccEEEccCCc-EEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEe
Q 018705          113 EKGLLKVTE-EG-VEAIVPDA----SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (351)
Q Consensus       113 ~~gl~~~~~-~g-~~~l~~~~----~~~n~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  185 (351)
                      .+.++.++. ++ .+.+.+..    ..+.+..++|||+ +++.....+         +|.....+..+.||..+++.+.+
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~---------~~r~s~~~~~~i~d~~~~~~~~l  106 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP---------IYQHSYTGYYVLSKIPHGDPQSL  106 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC---------CSSSCCCSEEEEEESSSCCCEEC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccc---------eeEeeccccEEEEEccCCceeec
Confidence            334555553 44 44433321    3466678999995 555432211         12222356899999988877665


Q ss_pred             ecCcc---ccceEEEcCCCCEEEEEe
Q 018705          186 HEGFY---FANGIALSKNEDFVVVCE  208 (351)
Q Consensus       186 ~~~~~---~~ngi~~~~dg~~lyv~~  208 (351)
                      .....   ...-..+||||+.+.+..
T Consensus       107 ~~~~~~~~~l~~~~wSPDG~~iafv~  132 (465)
T d1xfda1         107 DPPEVSNAKLQYAGWGPKGQQLIFIF  132 (465)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred             cCccCCccccceeeeccCCceEEEEe
Confidence            32211   112256889998654444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=3.5  Score=36.54  Aligned_cols=37  Identities=3%  Similarity=-0.056  Sum_probs=25.5

Q ss_pred             CCceEEEeeCCCeEEEEE---------cCCEEEEEEcCCCeEEEEe
Q 018705           53 HPEDVSVVVSKGALYTAT---------RDGWVKYFILHNETLVNWK   89 (351)
Q Consensus        53 ~pe~i~~d~~~g~lyv~~---------~~g~I~~~d~~~g~~~~~~   89 (351)
                      .+.+..++|++..+++..         ..+.++.+|..+++.+.+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~  107 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD  107 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeecc
Confidence            567778887777666543         2466788888888776653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.45  E-value=5  Score=36.57  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             EEEeeCCCeEEEEEc-CCEEEEEEcC-CCeEEEEeec-----C-------CccccceEEcCCCCEEEEeCCCCeEEEcC-
Q 018705           57 VSVVVSKGALYTATR-DGWVKYFILH-NETLVNWKHI-----D-------SQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (351)
Q Consensus        57 i~~d~~~g~lyv~~~-~g~I~~~d~~-~g~~~~~~~~-----~-------~~p~~gl~~d~~G~L~v~d~~~gl~~~~~-  121 (351)
                      ..+  .+|.+|+++. +++|+.+|.. +|+.. |...     .       .....|+++. ++++|+.+....++.++. 
T Consensus        58 P~v--~~g~vyv~t~~~~~v~Alda~~tG~~~-W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~~~~g~l~alda~  133 (571)
T d2ad6a1          58 PLV--IGDMMYVHSAFPNNTYALNLNDPGKIV-WQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQANGHLLALDAK  133 (571)
T ss_dssp             CEE--ETTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETT
T ss_pred             CEE--ECCEEEEecCCCCeEEEEeCCCCCceE-EEecCCCCcccccccccCcCCCcceee-CCeEEEEeCCCcEEeeehh
Confidence            445  3799999886 6889999974 68653 2110     0       0111156664 678999988888999995 


Q ss_pred             CCeEE----ecCCC--CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          122 EGVEA----IVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       122 ~g~~~----l~~~~--~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      +|...    +.+..  .....--+-.++.+|+..+...+            ...|.|..||..||+..-
T Consensus       134 tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         134 TGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL------------GVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred             hhhhhccccccccccccceeecCeEeCCeEEEeeccccc------------cccCcEEEEECCCCcEEE
Confidence            77222    11110  11111111124677776654211            235778899988887754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.23  E-value=0.87  Score=40.31  Aligned_cols=171  Identities=13%  Similarity=0.023  Sum_probs=90.3

Q ss_pred             CC-cEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEEee--cCccccceEEEcCCCCEEEEEecce-e-----
Q 018705          142 DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNEDFVVVCESWK-R-----  212 (351)
Q Consensus       142 dG-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngi~~~~dg~~lyv~~~~~-~-----  212 (351)
                      || .+|++|..                 ++||-++|.++-++....  .....+.|+...+++++.||.+... +     
T Consensus        98 DGrylFVNDka-----------------n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          98 DGRFLFMNDKA-----------------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             ceeEEEEEcCC-----------------CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCC
Confidence            77 47888765                 579999999988775533  4456788999988888888865333 2     


Q ss_pred             --------------EEeecCCCCceeEEeccCCCCCCceEECCCCC-EEEEEecCCc--hhhhhhhcC------hhHHHH
Q 018705          213 --------------YWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQ--TGVRAIQKC------REKWEL  269 (351)
Q Consensus       213 --------------~~i~~~~~~~~~~~~~~~~g~pd~i~~d~~G~-lwva~~~~~~--~~~~~~~~~------~~~~~~  269 (351)
                                    ++..+....+...-+ ..++.++++.++.+|+ +|+++.....  ...+.....      ....+.
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV-~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri  239 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQV-LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  239 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEe-eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh
Confidence                          222222222211111 2345689999999998 5555543211  122211110      001111


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEECCC--C-eEEEEEECCCCCcccceeEEE--EECCEEEEEecCCCeEEEEeCC
Q 018705          270 LDAYPGLISLLLPMGSDAGARVVKVDGND--G-KIIRDFNDPDATYISFVTSAA--EFDGNLYLASLQSNFIGILPLD  342 (351)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--g-~~~~~~~~~~g~~~~~~~~~~--~~~g~L~ig~~~~~~i~~~~~~  342 (351)
                      ..-.+..-       ....+++-.+|..+  + +.+..+..+.+     .+.+.  .++..+|+++.-++.+.+++++
T Consensus       240 e~av~~Gk-------~~eingV~VVD~~~~~~~~v~~yIPVpKs-----PHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         240 EKAIAAGD-------YQELNGVKVVDGRKEASSLFTRYIPIANN-----PHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             HHHHHHTC-------SEEETTEEEEECSGG--CSSEEEEEEESS-----CCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             HHhhhcCC-------cEEeCCceeecccccCCcceeEEEecCCC-----CCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            11111100       01112345566521  1 23334443322     22333  4567899988888989988875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.04  E-value=5  Score=34.20  Aligned_cols=134  Identities=12%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeecCCccccceEE------cCCC-CEEEEeCC-C---C--eEEEcC-CC-eEEe
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT------TKDG-GVILCDNE-K---G--LLKVTE-EG-VEAI  127 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~~~~p~~gl~~------d~~G-~L~v~d~~-~---g--l~~~~~-~g-~~~l  127 (351)
                      .-.++.+..+++|+.+|.+ |+...+. ..++++ .+.+      +.+. .+.++... .   .  ++.+++ .+ .+.+
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~-~~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSY-HTGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEEC-CSSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEec-ccCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            3445555566679999984 5443332 234554 3332      2222 23333322 1   2  344554 33 4444


Q ss_pred             cCC-------CCCcccEEE--cc-CCcEEEEeCCCccCCcccccccccccCCceEEEE--e-CCCCeEEE-e---ecCcc
Q 018705          128 VPD-------ASFTNDVIA--AS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY--D-PKLKETTV-L---HEGFY  190 (351)
Q Consensus       128 ~~~-------~~~~n~l~~--d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~--d-~~~~~~~~-~---~~~~~  190 (351)
                      ...       ...++++|.  ++ +|.+|+-...                ..|.+.+|  . .+.+.+.. .   .....
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~  180 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMNS  180 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECSS
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCCC
Confidence            322       146889998  55 4655543321                12444333  2 22333321 1   12223


Q ss_pred             ccceEEEcCCCCEEEEEecceeEEe
Q 018705          191 FANGIALSKNEDFVVVCESWKRYWL  215 (351)
Q Consensus       191 ~~ngi~~~~dg~~lyv~~~~~~~~i  215 (351)
                      .+.|++++.+.++||+++....+|.
T Consensus       181 q~EGCVvDde~~~LyisEE~~Giw~  205 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEEDEAIWK  205 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             ccceEEEeCCCCcEEEecCccceEE
Confidence            5679999999889999998765554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.77  E-value=6.8  Score=35.71  Aligned_cols=58  Identities=12%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CCeEEEEEcCCEEEEEEcCCCeEEEEeec-----CCc------cccceEEcCCCCEEEEeCCCCeEEEcC-CC
Q 018705           63 KGALYTATRDGWVKYFILHNETLVNWKHI-----DSQ------SLLGLTTTKDGGVILCDNEKGLLKVTE-EG  123 (351)
Q Consensus        63 ~g~lyv~~~~g~I~~~d~~~g~~~~~~~~-----~~~------p~~gl~~d~~G~L~v~d~~~gl~~~~~-~g  123 (351)
                      +|.+|+.+.+++|+.+|.++|+.. |...     ..+      .. |+++. ++++|+++....++.++. +|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~l-W~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeE-EEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            789999999999999999999763 3211     011      12 45553 568999988888999995 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=4.3  Score=31.60  Aligned_cols=60  Identities=15%  Similarity=0.136  Sum_probs=39.0

Q ss_pred             EEeeCCCeEEEEEcCCEEEEEEcCCCeEEE-EeecCCccccceEEcCCCCEEEEeCCCCeEEEc
Q 018705           58 SVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (351)
Q Consensus        58 ~~d~~~g~lyv~~~~g~I~~~d~~~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~d~~~gl~~~~  120 (351)
                      +++++++.|.++..||.|..||..+++... +........ .+++  +++++++....+.+++.
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe-eeec--ccceeeccccccccccc
Confidence            345557788999999999999988776643 332233344 5655  56666655455655555

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.15  E-value=9.2  Score=34.71  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             CCceEEEEEECCCCeEEEEEECCCCCcccceeEEEEECCEEEEEec
Q 018705          286 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  331 (351)
Q Consensus       286 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~ig~~  331 (351)
                      ...+.+..||.++||++=++..+.+....-+  ....+|+.||+..
T Consensus       482 ~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~--ty~~dGkqYi~v~  525 (571)
T d2ad6a1         482 TLDGYLKALDNKDGKELWNFKMPSGGIGSPM--TYSFKGKQYIGSM  525 (571)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCCceecce--EEEECCEEEEEEE
Confidence            4556788999989999988876654322222  2245899999553

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=5  Score=31.20  Aligned_cols=92  Identities=14%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             EEcCCCCEEEEeCCCCeEEEc--CCC--eEEecCCCCCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEE
Q 018705          100 TTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (351)
Q Consensus       100 ~~d~~G~L~v~d~~~gl~~~~--~~g--~~~l~~~~~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (351)
                      +++.+|+++++....+.++++  .++  ...+......+.++.  .++++.++.+.                 ++.+..|
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~--~~~~~l~s~s~-----------------D~~i~~~   80 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--YDERVIITGSS-----------------DSTVRVW   80 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--CCSSEEEEEET-----------------TSCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee--cccceeecccc-----------------ccccccc
Confidence            456678877766667777776  345  555544334454444  46666666543                 4678888


Q ss_pred             eCCCCeEEEeecCccccceEEEcCCCCEEEEEecce
Q 018705          176 DPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (351)
Q Consensus       176 d~~~~~~~~~~~~~~~~ngi~~~~dg~~lyv~~~~~  211 (351)
                      +..++.......... ............+..+...+
T Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  115 (293)
T d1p22a2          81 DVNTGEMLNTLIHHC-EAVLHLRFNNGMMVTCSKDR  115 (293)
T ss_dssp             ESSSCCEEEEECCCC-SCEEEEECCTTEEEEEETTS
T ss_pred             ccccccccccccccc-cccccccccccceeeccccc
Confidence            776665544332222 22223333444454444444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.89  E-value=8.1  Score=35.33  Aligned_cols=109  Identities=16%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CCeEEEEEc-CCEEEEEEc-CCCeEEEEeec------------CCccccceEEcCC-----CCEEEEeCCCCeEEEcC-C
Q 018705           63 KGALYTATR-DGWVKYFIL-HNETLVNWKHI------------DSQSLLGLTTTKD-----GGVILCDNEKGLLKVTE-E  122 (351)
Q Consensus        63 ~g~lyv~~~-~g~I~~~d~-~~g~~~~~~~~------------~~~p~~gl~~d~~-----G~L~v~d~~~gl~~~~~-~  122 (351)
                      +|.+|+.+. .++++.+|. ++|+.. |...            +...+.|+++-.+     .++|+++....++.++. +
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~-W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTIL-WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEE-EEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            689998765 578999996 578653 3211            0111226666432     14888887778999995 7


Q ss_pred             C--eEEecCCC----CCcccEEEccCCcEEEEeCCCccCCcccccccccccCCceEEEEeCCCCeEEE
Q 018705          123 G--VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (351)
Q Consensus       123 g--~~~l~~~~----~~~n~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  184 (351)
                      |  +-.+....    .....--.--++.+|+..+...            ....|.|.-||..||+..-
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e------------~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE------------LGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG------------GTCCCEEEEEETTTCCEEE
T ss_pred             CceeccccccccccccccccCCcEECCeEEEeecccc------------ccccCceEEEECCCCcEEE
Confidence            7  22222111    1111101112566777665422            1235788899988888753