Citrus Sinensis ID: 018709

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
ccccccccccccccHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccccEEEEEcccccEEEEEEccccccccHHHHHHccccccHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccHEEEcccHHHHHHHHEccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHEEEEEHHcccccccHHHHHHHcHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcc
MYGFEAMTFNIHGGYLEAIVRGYRAGLLTaadynnlcqcetldDIKMHLsateygpylqnepsplhtttIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEkchplgmfdSIATLAVAQNMRELYRLVLVdtplapyfsecitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSigteltrddRRKLYSNFgllypygheelavcEDIDQvrgvmekyppyqsifsklsygesqmlDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVaqnqksrvhdsVVFIF
MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECitsedlddmnIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITinsigteltrddrRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECvaqnqksrvhdsvvfif
MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
**GFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVF**
**GFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL****SQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
*YGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
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MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query351 2.2.26 [Sep-21-2011]
Q9LHA4351 V-type proton ATPase subu yes no 1.0 1.0 0.940 0.0
Q9LJI5351 V-type proton ATPase subu yes no 1.0 1.0 0.940 0.0
Q8RU33351 Probable V-type proton AT yes no 1.0 1.0 0.923 0.0
P54641356 V-type proton ATPase subu yes no 0.957 0.943 0.603 1e-125
Q9W4P5350 V-type proton ATPase subu yes no 0.971 0.974 0.562 1e-113
Q25531348 V-type proton ATPase subu N/A no 0.971 0.979 0.544 1e-109
Q5ZHL0351 V-type proton ATPase subu yes no 0.988 0.988 0.514 1e-108
P51863351 V-type proton ATPase subu yes no 0.997 0.997 0.528 1e-108
Q5R6I1351 V-type proton ATPase subu yes no 0.997 0.997 0.525 1e-107
P61421351 V-type proton ATPase subu yes no 0.997 0.997 0.525 1e-107
>sp|Q9LHA4|VA0D2_ARATH V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1 Back     alignment and function desciption
 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/351 (94%), Positives = 346/351 (98%)

Query: 1   MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
           MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YGPYLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct: 121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR+DR+KL
Sbjct: 181 MRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKR 300
           YSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYGESQMLDKAFYEEEV+R
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300

Query: 301 LCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351
           LCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 301 LCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LJI5|VA0D1_ARATH V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RU33|VA0D_ORYSJ Probable V-type proton ATPase subunit d OS=Oryza sativa subsp. japonica GN=Os01g0587000 PE=2 SV=1 Back     alignment and function description
>sp|P54641|VA0D_DICDI V-type proton ATPase subunit d OS=Dictyostelium discoideum GN=vatD-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39-1 PE=2 SV=1 Back     alignment and function description
>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|Q5ZHL0|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2 SV=1 Back     alignment and function description
>sp|P51863|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R6I1|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2 SV=1 Back     alignment and function description
>sp|P61421|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
449459460351 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.985 0.0
225452712351 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.974 0.0
357501685351 V-type proton ATPase subunit d2 [Medicag 1.0 1.0 0.971 0.0
356531794351 PREDICTED: V-type proton ATPase subunit 1.0 1.0 0.971 0.0
209981405351 vacuolar ATPase subunit d [Vigna radiata 1.0 1.0 0.965 0.0
217072440351 unknown [Medicago truncatula] gi|3885009 1.0 1.0 0.965 0.0
148907059351 unknown [Picea sitchensis] 1.0 1.0 0.960 0.0
255561094351 vacuolar ATP synthase subunit ac39, puta 1.0 1.0 0.962 0.0
224141359351 predicted protein [Populus trichocarpa] 1.0 1.0 0.957 0.0
363814316351 uncharacterized protein LOC100780773 [Gl 1.0 1.0 0.962 0.0
>gi|449459460|ref|XP_004147464.1| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus] gi|449518539|ref|XP_004166299.1| PREDICTED: V-type proton ATPase subunit d2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/351 (98%), Positives = 350/351 (99%)

Query: 1   MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
           MYGFEA+TFNIHGGYLEAIVRG+RAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN
Sbjct: 1   MYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60

Query: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
           EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER
Sbjct: 61  EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120

Query: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
           DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI
Sbjct: 121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180

Query: 181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
           MRNTLYKAYLEDFY+FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL
Sbjct: 181 MRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240

Query: 241 YSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKR 300
           YSNFGLLYPYGHEELA+CEDIDQVRG MEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKR
Sbjct: 241 YSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKR 300

Query: 301 LCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351
           LCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF
Sbjct: 301 LCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452712|ref|XP_002282568.1| PREDICTED: V-type proton ATPase subunit d2 [Vitis vinifera] gi|147866282|emb|CAN79922.1| hypothetical protein VITISV_042442 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357501685|ref|XP_003621131.1| V-type proton ATPase subunit d2 [Medicago truncatula] gi|124360985|gb|ABN08957.1| H+-transporting two-sector ATPase, C (AC39) subunit [Medicago truncatula] gi|355496146|gb|AES77349.1| V-type proton ATPase subunit d2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531794|ref|XP_003534461.1| PREDICTED: V-type proton ATPase subunit d2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|209981405|gb|ACJ05375.1| vacuolar ATPase subunit d [Vigna radiata] Back     alignment and taxonomy information
>gi|217072440|gb|ACJ84580.1| unknown [Medicago truncatula] gi|388500930|gb|AFK38531.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|148907059|gb|ABR16673.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|255561094|ref|XP_002521559.1| vacuolar ATP synthase subunit ac39, putative [Ricinus communis] gi|223539237|gb|EEF40830.1| vacuolar ATP synthase subunit ac39, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224141359|ref|XP_002324040.1| predicted protein [Populus trichocarpa] gi|222867042|gb|EEF04173.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363814316|ref|NP_001242797.1| uncharacterized protein LOC100780773 [Glycine max] gi|255640110|gb|ACU20346.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2095492351 AT3G28715 [Arabidopsis thalian 1.0 1.0 0.940 4.7e-183
TAIR|locus:2095482351 AT3G28710 [Arabidopsis thalian 1.0 1.0 0.940 9.7e-183
DICTYBASE|DDB_G0273657356 vatD-2 "vacuolar ATPase subuni 0.965 0.952 0.598 3.1e-115
DICTYBASE|DDB_G0273071356 vatD-1 "vacuolar ATPase subuni 0.965 0.952 0.598 3.1e-115
FB|FBgn0028665350 VhaAC39-1 "Vacuolar H[+] ATPas 0.971 0.974 0.562 4.6e-105
ZFIN|ZDB-GENE-030131-1531350 atp6v0d1 "ATPase, H+ transport 0.988 0.991 0.530 3e-101
UNIPROTKB|Q5ZHL0351 ATP6V0D2 "V-type proton ATPase 0.988 0.988 0.514 3.8e-101
MGI|MGI:1201778351 Atp6v0d1 "ATPase, H+ transport 0.988 0.988 0.530 1.3e-100
RGD|1306159351 Atp6v0d1 "ATPase, H+ transport 0.988 0.988 0.530 1.3e-100
UNIPROTKB|E1BVF8351 LOC100857345 "Uncharacterized 0.988 0.988 0.524 2.1e-100
TAIR|locus:2095492 AT3G28715 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
 Identities = 330/351 (94%), Positives = 346/351 (98%)

Query:     1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN 60
             MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YGPYLQN
Sbjct:     1 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQN 60

Query:    61 EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER 120
             EPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTLHER
Sbjct:    61 EPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHER 120

Query:   121 DVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEI 180
             DVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEI
Sbjct:   121 DVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEI 180

Query:   181 MRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240
             MRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTR+DR+KL
Sbjct:   181 MRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKL 240

Query:   241 YSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKR 300
             YSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYGESQMLDKAFYEEEV+R
Sbjct:   241 YSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300

Query:   301 LCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF 351
             LCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+HDSVV++F
Sbjct:   301 LCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA
GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA
GO:0015992 "proton transport" evidence=ISS
GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA
GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2095482 AT3G28710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273657 vatD-2 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273071 vatD-1 "vacuolar ATPase subunit D" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0028665 VhaAC39-1 "Vacuolar H[+] ATPase AC39 subunit 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1531 atp6v0d1 "ATPase, H+ transporting, V0 subunit D isoform 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHL0 ATP6V0D2 "V-type proton ATPase subunit d 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1201778 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306159 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVF8 LOC100857345 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHA4VA0D2_ARATHNo assigned EC number0.94011.01.0yesno
Q9LJI5VA0D1_ARATHNo assigned EC number0.94011.01.0yesno
O13753VA0D_SCHPONo assigned EC number0.50720.96580.9883yesno
P61421VA0D1_HUMANNo assigned EC number0.52550.99710.9971yesno
P54641VA0D_DICDINo assigned EC number0.60350.95720.9438yesno
Q9W4P5VA0D1_DROMENo assigned EC number0.56230.97150.9742yesno
P51863VA0D1_MOUSENo assigned EC number0.52840.99710.9971yesno
Q8RU33VA0D_ORYSJNo assigned EC number0.92301.01.0yesno
Q5ZHL0VA0D2_CHICKNo assigned EC number0.51430.98860.9886yesno
Q25531VA0D_MANSENo assigned EC number0.54490.97150.9798N/Ano
P61420VA0D1_BOVINNo assigned EC number0.52550.99710.9971yesno
P32366VA0D_YEASTNo assigned EC number0.45240.96010.9768yesno
Q5R6I1VA0D1_PONABNo assigned EC number0.52550.99710.9971yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
pfam01992335 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) s 1e-95
COG1527346 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase su 4e-66
PRK01198352 PRK01198, PRK01198, V-type ATP synthase subunit C; 1e-10
TIGR02923343 TIGR02923, AhaC, ATP synthase A1, C subunit 3e-10
>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit Back     alignment and domain information 
 Score =  287 bits (736), Expect = 1e-95
 Identities = 104/331 (31%), Positives = 166/331 (50%), Gaps = 8/331 (2%)

Query: 15  YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKC 74
           Y  A VR  R+ LL   DY  L + E+L+ +++ L   +YG  L    S    + I +  
Sbjct: 1   YPNARVRAMRSRLLKEEDYRELLEMESLEILRLLLE-DDYGDELAELGSKFSVSLIEKAL 59

Query: 75  TLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG- 133
              L   Y+ +   A   L   ++ +     I N+  ++ G L  R  +E+LE   PLG 
Sbjct: 60  NRNLAKTYELLRRIAPGSLRKLIDLLLKRWDIWNIKTLIRGKLAGRPAEEVLELLIPLGE 119

Query: 134 MFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDF 193
           +F+ +  LA A+ + E+   VL  TP AP   + +   + D+ NIEI+ NTLYK Y E+ 
Sbjct: 120 VFEKMKELADAKTIEEVVN-VLEGTPYAPPLQKAL--SEYDETNIEIIENTLYKRYYEEL 176

Query: 194 YKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHE 253
            KF +  GG  A+I+ + LA E DRR + I +   G+ L+ D+ +KLY   G L P G E
Sbjct: 177 LKFAKSRGGKEAKILREFLALEIDRRNLKIALRLKGSGLSPDEIKKLYPEGGQLVPEGLE 236

Query: 254 ELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQM--LDKAFYEEEVKRLC-LAFEQQFH 310
           +LA  +D D+V   +E     +++          +  L++A  +  ++R+  LAF     
Sbjct: 237 KLARADDYDEVLSELEGTAYGEALSEAAGEYGGSLKALERALDKVLLERISKLAFVYPLS 296

Query: 311 YGVFFAYMRLREQEIRNLMWISECVAQNQKS 341
            G   +Y++L+EQE+RNL  I+    Q  K 
Sbjct: 297 VGPVLSYIKLKEQEVRNLRAIARGKEQGLKP 327

This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae. Length = 335
>gnl|CDD|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|234917 PRK01198, PRK01198, V-type ATP synthase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|234061 TIGR02923, AhaC, ATP synthase A1, C subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 351
TIGR02923343 AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn 100.0
PF01992337 vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int 100.0
PRK01198352 V-type ATP synthase subunit C; Provisional 100.0
COG1527346 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E 100.0
KOG2957350 consensus Vacuolar H+-ATPase V0 sector, subunit d 100.0
PRK01198352 V-type ATP synthase subunit C; Provisional 99.94
TIGR02923 343 AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn 99.92
COG1527346 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E 99.78
PF01992337 vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int 99.75
PF10962271 DUF2764: Protein of unknown function (DUF2764); In 98.65
KOG2957 350 consensus Vacuolar H+-ATPase V0 sector, subunit d 92.16
>TIGR02923 AhaC ATP synthase A1, C subunit Back     alignment and domain information 
Probab=100.00  E-value=1.1e-60  Score=454.29  Aligned_cols=333  Identities=20%  Similarity=0.257  Sum_probs=308.1

Q ss_pred             CCcchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhc
Q 018709           11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS-PLHTTTIVEKCTLKLVDEYKHMLCQA   89 (351)
Q Consensus        11 ~~y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~-~~~~~~lE~~L~~~l~~~~~~l~~~~   89 (351)
                      .+|+|+|||||+|++++|++++|++|++++|++|++++|++|+|++.+.++.. ..++.++|.+|++++++.|..+.+++
T Consensus         3 ~~Y~~~~arvr~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~   82 (343)
T TIGR02923         3 SPYAYPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRIS   82 (343)
T ss_pred             CCcchHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            57999999999999999999999999999999999999999999999988643 46899999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhh
Q 018709           90 TEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSEC  167 (351)
Q Consensus        90 ~~~~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~  167 (351)
                      |++.+++++.+..+||+||||+++|++..|++.+++.+.++|.|.++  .++.+++++|++++++.| .+|+|+++++++
T Consensus        83 ~~~~~~~~~~~~~~~di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~L-~~t~y~~~l~~~  161 (343)
T TIGR02923        83 PGASRDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEAL-EGTPYYGPLQEA  161 (343)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHHc-CCCccHHHHHHH
Confidence            99989999999999999999999999999999999988899999988  599999999999999999 999999999998


Q ss_pred             hcccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCc-c
Q 018709          168 ITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-L  246 (351)
Q Consensus       168 ~~~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g-~  246 (351)
                      + .   ++++++.+|.+||++||+++++.++..++.+.+.+.++++.+||+.||+|++|+|++|++++++.++++||| .
T Consensus       162 ~-~---~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~  237 (343)
T TIGR02923       162 L-A---GNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYE  237 (343)
T ss_pred             H-h---cCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccc
Confidence            7 2   458999999999999999999998865556678999999999999999999999999999999999999999 7


Q ss_pred             cChhhHHhcccCCCHHHHHHHhhcCcchhHhhhhhc--cCCcchHHHHHHHHHHHHHH-HHhhcCCchHHHHHHHHHHHH
Q 018709          247 LYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS--YGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQ  323 (351)
Q Consensus       247 l~~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~--~~~~~~lE~~~~~~~~~~~~-~~~~~~~~~~~i~aYl~~ke~  323 (351)
                      ++++.+.+|+++++.+++.+.|++|+|+..+.++.+  .++...+|+.++++++..++ .++..|||++|+++|+++||+
T Consensus       238 l~~~~l~~l~~~~~~~~~~~~l~~t~y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~  317 (343)
T TIGR02923       238 LDEEKLAPLAHIESIDEVVSALDGTKYGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKER  317 (343)
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHhcCcchHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            799999999999999999999999998765554432  34567999999999999997 589999999999999999999


Q ss_pred             HHHhHHHHHHHHhhchh-hhhccccc
Q 018709          324 EIRNLMWISECVAQNQK-SRVHDSVV  348 (351)
Q Consensus       324 Ei~nLr~I~eg~~~~~~-~~i~~~~~  348 (351)
                      ||+|||+|++|+++|++ ++|++.++
T Consensus       318 Ei~nlr~I~~gk~~~l~~e~I~~~l~  343 (343)
T TIGR02923       318 EVRNLRAIARGKEEGLPPEEIKEQLV  343 (343)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            99999999999999986 99988764

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK01198 V-type ATP synthase subunit C; Provisional Back     alignment and domain information
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion] Back     alignment and domain information
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion] Back     alignment and domain information
>PRK01198 V-type ATP synthase subunit C; Provisional Back     alignment and domain information
>TIGR02923 AhaC ATP synthase A1, C subunit Back     alignment and domain information
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion] Back     alignment and domain information
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function Back     alignment and domain information
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
1v9m_A323 V-type ATP synthase subunit C; VOV1-ATPase, V-type 1e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Length = 323 Back     alignment and structure
 Score =  191 bits (486), Expect = 1e-58
 Identities = 53/326 (16%), Positives = 101/326 (30%), Gaps = 22/326 (6%)

Query: 14  GYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEK 73
            YL A VR  R  LL  + +         D +++ LS T YG  L  +  P     +   
Sbjct: 6   AYLNARVRVRRGTLLKESFFQEALDLSFADFLRL-LSETVYGGELAGQGLPD----VDRA 60

Query: 74  CTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG 133
                      +    T      +  +   + + N+  ++      R  +E+L     L 
Sbjct: 61  VLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTL- 119

Query: 134 MFDSIATLAVAQNMRELYRLVLVD-TPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLED 192
             +       AQ+   + +++ V   PLA      +     +  ++  +   L K + ED
Sbjct: 120 REEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVL----RETQDLARVEALLAKRFFED 175

Query: 193 FYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 252
             K  + L       + D LA E D   +       G+ L        +   G       
Sbjct: 176 VAKAAKGL---DQPALRDYLALEVDAENLRTAFKLQGSGL---APDAFFLKGGRFVDRVR 229

Query: 253 EELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYG 312
               +  D   +  +     P+  +           L++      +K      +     G
Sbjct: 230 FARLMEGDYAVLDEL--SGTPFSGLSGVRDLKA---LERGLRCVLLKEAKKGVQDPLGVG 284

Query: 313 VFFAYMRLREQEIRNLMWISECVAQN 338
           +  AY++ RE E   L  ++      
Sbjct: 285 LVLAYVKEREWEAVRLRLLARRAYFG 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
1v9m_A323 V-type ATP synthase subunit C; VOV1-ATPase, V-type 100.0
1v9m_A323 V-type ATP synthase subunit C; VOV1-ATPase, V-type 99.68
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Back     alignment and structure
Probab=100.00  E-value=8.2e-58  Score=429.81  Aligned_cols=313  Identities=17%  Similarity=0.166  Sum_probs=283.2

Q ss_pred             cchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018709           13 GGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEP   92 (351)
Q Consensus        13 y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~   92 (351)
                      |+|++||||||++++|++++|++|++ +|++|++.+|++|+|++.+.+++    ..++|.+|++++.++|+.+.+++|++
T Consensus         5 y~y~~arvR~~~~~lL~~~~~~~L~~-~sl~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~~   79 (323)
T 1v9m_A            5 FAYLNARVRVRRGTLLKESFFQEALD-LSFADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTGE   79 (323)
T ss_dssp             CHHHHHHHHHHHTTSCCHHHHHHHTT-CCHHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCHH
T ss_pred             chhHhHHHHHHHHhccCHHHHHHHHh-CCHHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999999999999 99999999999999999987763    78999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhhhCCCChhhhhhhhcc
Q 018709           93 LSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITS  170 (351)
Q Consensus        93 ~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~~~t~y~~~l~~~~~~  170 (351)
                      .+.|+++++.+||+||||+++|++..|++.+++.  ++| |.++  .++.|+.++|++|+++.| .+|||+.++.++...
T Consensus        80 ~~~~~~~~~~~~di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~~L-~~t~y~~~l~~~~~~  155 (323)
T 1v9m_A           80 AREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQVL-AVPGHPLARALRAVL  155 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHHHH-HTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHHHH-hccccchHHHHHHHH
Confidence            8999999999999999999999999999999875  799 9999  599999999999999999 999999999988766


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCcc-cCh
Q 018709          171 EDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LYP  249 (351)
Q Consensus       171 ~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~-l~~  249 (351)
                      +  ++.+++.+|+.||++||+++++.++++++   +.+.++++.+||+.||+|++|+++++.+   +.++++|||+ |++
T Consensus       156 ~--~~~~~~~~e~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~---i~~~li~~G~~l~~  227 (323)
T 1v9m_A          156 R--ETQDLARVEALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA---PDAFFLKGGRFVDR  227 (323)
T ss_dssp             T--TCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC---GGGTCCSSCSSCCH
T ss_pred             H--HcCCcHHHHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHhccCCCCccCH
Confidence            5  33499999999999999999999988765   6899999999999999999999999886   7889999997 999


Q ss_pred             hhHHhcccCCCHHHHHHHhhcCcchhHhhhhhccCCcchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhHH
Q 018709          250 YGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLM  329 (351)
Q Consensus       250 ~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~~~~~~~lE~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nLr  329 (351)
                      +.+.+++.+++  ++.+.+++|+|. .+++..   +...+|+.+++++++.++.++++|||++|++||+++||+||+|||
T Consensus       228 ~~l~~l~~~~~--~~~~~l~~t~Y~-~~~~~~---~~~~~E~~~~~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl~  301 (323)
T 1v9m_A          228 VRFARLMEGDY--AVLDELSGTPFS-GLSGVR---DLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLR  301 (323)
T ss_dssp             HHHHHHHTTCG--GGGGSCTTSTTG-GGTTCC---SHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcH--HHHHHHcCCCHH-HHhccC---CHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            99999998887  889999998864 444332   356899999999999998899999999999999999999999999


Q ss_pred             HHHHHHhhchh-hhhccccc
Q 018709          330 WISECVAQNQK-SRVHDSVV  348 (351)
Q Consensus       330 ~I~eg~~~~~~-~~i~~~~~  348 (351)
                      ||++||++|++ ++|+++++
T Consensus       302 ~I~~~~~~~l~~e~i~~~l~  321 (323)
T 1v9m_A          302 LLARRAYFGLPRAQVEEEVV  321 (323)
T ss_dssp             HHHHHHHHTCCHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHc
Confidence            99999999976 99998875
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 351
d1v9ma_319 f.40.1.1 (A:) V-type ATP synthase subunit C {Therm 2e-61
>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Length = 319 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

 Score =  197 bits (502), Expect = 2e-61
 Identities = 54/328 (16%), Positives = 94/328 (28%), Gaps = 26/328 (7%)

Query: 14  GYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEK 73
            YL A VR  R  LL  + +          D    LS T YG  L  +  P     +   
Sbjct: 2   AYLNARVRVRRGTLLKESFFQEALDLS-FADFLRLLSETVYGGELAGQGLPD----VDRA 56

Query: 74  CTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLG 133
                      +    T      +  +   + + N+  ++      R  +E+L      G
Sbjct: 57  VLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL---LLPG 113

Query: 134 MFD--SIATLAVAQNMRELYR-LVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYL 190
                       AQ+   + + L +   PLA            +  ++  +   L K + 
Sbjct: 114 TLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAV----LRETQDLARVEALLAKRFF 169

Query: 191 EDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPY 250
           ED  K      G     + D LA E D   +       G+ L        +   G     
Sbjct: 170 EDVAKAA---KGLDQPALRDYLALEVDAENLRTAFKLQGSGL---APDAFFLKGGRFVDR 223

Query: 251 GHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFH 310
                 + E    V   +   P            + + L++      +K      +    
Sbjct: 224 -VRFARLMEGDYAVLDELSGTP----FSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLG 278

Query: 311 YGVFFAYMRLREQEIRNLMWISECVAQN 338
            G+  AY++ RE E   L  ++      
Sbjct: 279 VGLVLAYVKEREWEAVRLRLLARRAYFG 306

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
d1v9ma_319 V-type ATP synthase subunit C {Thermus thermophilu 100.0
d1v9ma_319 V-type ATP synthase subunit C {Thermus thermophilu 99.57
>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-55  Score=410.28  Aligned_cols=313  Identities=18%  Similarity=0.193  Sum_probs=274.1

Q ss_pred             cchHHHHHHHHHhcCCCHHhHHHHHcCCChHHHHHhcCCCCChhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018709           13 GGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEP   92 (351)
Q Consensus        13 y~~~~arvra~~~~lL~~~~~~~L~~~~s~~e~~~~L~~T~Y~~~l~~~~~~~~~~~lE~~L~~~l~~~~~~l~~~~~~~   92 (351)
                      |+|++||||||++++|++++|++|++| |++|++++|++|+|++.+.+.    ++.++|.+|.+++.++|..+.+++|++
T Consensus         1 Y~y~~arir~~~~~lL~~~~~~~L~~~-s~~e~~~~L~~t~Y~~~l~~~----~~~~ie~~L~~~l~~~~~~l~~~~~~~   75 (319)
T d1v9ma_           1 FAYLNARVRVRRGTLLKESFFQEALDL-SFADFLRLLSETVYGGELAGQ----GLPDVDRAVLRTQAKLVGDLPRLVTGE   75 (319)
T ss_dssp             CHHHHHHHHHHHTTSCCHHHHHHHTTC-CHHHHHHHHHTSGGGGGCCCS----SHHHHHHHHHHHHHHHTTTHHHHCCHH
T ss_pred             CccHHHHHHHHHHcCCCHHHHHHHHcC-CHHHHHHHHHhCCchhhhhcc----ChHHHHHHHHHHHHHHHHHHHHHCCch
Confidence            799999999999999999999999998 899999999999999988654    688999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhccCCCCc--chhHHHhcCCHHHHHHHhh-hCCCChhhhhhhhc
Q 018709           93 LSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVL-VDTPLAPYFSECIT  169 (351)
Q Consensus        93 ~~~~~~~~~~~~di~NlK~llr~~~~g~~~~~i~~~l~~~G~~~--~l~~L~~~~~~~el~~~l~-~~t~y~~~l~~~~~  169 (351)
                      .+.|+++++.+||+||||+++|++.+|++.+++   ++|.|.++  .+..++.+++++++.+.+. .+|||++.+.+...
T Consensus        76 ~k~~~~~~~~~~~i~Nik~llr~~~~g~~~~~l---l~~~g~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  152 (319)
T d1v9ma_          76 AREAVRLLLLRNDLHNLQALLRAKATGRPFEEV---LLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLR  152 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGC---CCCSCSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHh---ccCCCccCHHHHHHHHhCCCHHHHHHHhcccCchHHHHHHHHhh
Confidence            999999999999999999999999999998876   68999988  6889999999999999882 57888888877642


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHhhhccccCCccc-C
Q 018709          170 SEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLL-Y  248 (351)
Q Consensus       170 ~~~~~~~~~~~~E~~LD~~y~~~l~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~i~R~k~~~~~~e~~~~~l~~~g~l-~  248 (351)
                          +++|++.+|+.||++||+++++.+++.   +.+.+.++++.+||+.||+|++|+|+++++++.   +++|||.+ +
T Consensus       153 ----~~~d~~~ie~~Ld~~y~~~l~~~~~~~---~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~---~li~~g~~~~  222 (319)
T d1v9ma_         153 ----ETQDLARVEALLAKRFFEDVAKAAKGL---DQPALRDYLALEVDAENLRTAFKLQGSGLAPDA---FFLKGGRFVD  222 (319)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCCGGG---TCCSSCSSCC
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH---hcCCCCCCCc
Confidence                348999999999999999999887654   346999999999999999999999999998875   58999965 5


Q ss_pred             hhhHHhcccCCCHHHHHHHhhcCcchhHhhhhhccCCcchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhH
Q 018709          249 PYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNL  328 (351)
Q Consensus       249 ~~~l~~l~~~~~~~~~~~~l~~t~~~~~l~~~~~~~~~~~lE~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL  328 (351)
                      .+.+..++  ++.+++.+.|.+|+|. .+.+   .++...+|+.+++++++.++.++..|||++|+++|+++||+|++||
T Consensus       223 ~~~~~~~~--~~~~~~~~~L~~t~y~-~~~~---~~~~~~~e~~~~~~~~~~~~~~~~~~~s~~~i~aYl~~ke~Ei~nL  296 (319)
T d1v9ma_         223 RVRFARLM--EGDYAVLDELSGTPFS-GLSG---VRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRL  296 (319)
T ss_dssp             HHHHHHHH--TTCGGGGGSCTTSTTG-GGTT---CCSHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh--cCHHHHHHHHHhchhh-hhhc---cccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Confidence            56666664  3568889999998864 3332   2446789999999999999888999999999999999999999999


Q ss_pred             HHHHHHHhhchh-hhhcccccc
Q 018709          329 MWISECVAQNQK-SRVHDSVVF  349 (351)
Q Consensus       329 r~I~eg~~~~~~-~~i~~~~~~  349 (351)
                      |+|++||++|+| ++|++++|.
T Consensus       297 ~~I~~gk~~~l~~e~I~~~li~  318 (319)
T d1v9ma_         297 RLLARRAYFGLPRAQVEEEVVC  318 (319)
T ss_dssp             HHHHHHHHHTCCHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHcCC
Confidence            999999999987 999999874
>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure