Citrus Sinensis ID: 018721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msterhassstsaspeenAMFLDILheapllghrkshsifGSVVYCFVLAGYAILAAgttwifhpihylippllcSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQynslnsqpdvmkslysplqpsssleglryhdggrlSDEQMALLQYQRENLHFLSEEILRLQECLSKyeqsddgstpqVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTrrnqhgpaesnehdta
Flexible Loop (DISEMBL)
msterhassstsaspeeNAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVrntnnqyveeneRLRAILGEWSTRAAKLERalevermsnielqkkistrrnqhgpaesnehdta
Low Complexity Region (SEG)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHisilsistllriimliEAICAASFMSVYIGYVHQYNSLNSQPDVMKslysplqpssslEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Disordered region (IsUnstruct)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSL***********************************MALLQYQRENLHFLSEEILRLQECLSK***************HLL*******************ELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKL************************************
Disordered Region (DISOPRED)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYS***********************MALLQYQRENLHFLSEEIL*************************************************************************************************************************
Disordered Region (DISEMBL)
***************EENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY*********QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI******************
Disordered Region (DISPRO)
****************ENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQ**DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLxxxxxxxxxxxxxxxxxxxxxLRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRxxxxxxxxxxxxxxxxxxxxxISTRRNQHGPAESNEHDTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q6NYE7	271	Transmembrane protein 192	yes	no	0.427	0.553	0.3	6e-06
Q5U1Y0	266	Transmembrane protein 192	yes	no	0.299	0.394	0.293	7e-06
Q9CXT7	266	Transmembrane protein 192	yes	no	0.435	0.575	0.262	1e-05

>sp|Q6NYE7|TM192_DANRE Transmembrane protein 192 OS=Danio rerio GN=tmem192 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)

Query: 79  VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
           V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct: 99  VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query: 133 I----VWRPHISILSISTLLRII---MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS 185
           I    +   ++  LS+  LL II   +L+  IC    +  Y  +V ++N     PDV + 
Sbjct: 159 IAPSSLLDANVKNLSVYLLLAIICLELLLTIIC----LLRYTVHVVKFNRKKPHPDVTEE 214

Query: 186 LYSPLQPSSSLEGLRYHDGGRLSD---EQMALLQYQRENLHFLSEEILRL 232
             S    S +     + DG  L D   +Q  L+ Y +++   LS  IL L
Sbjct: 215 ERSYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264

Danio rerio (taxid: 7955)

>sp|Q5U1Y0|TM192_RAT Transmembrane protein 192 OS=Rattus norvegicus GN=Tmem192 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184
            P  + L +  +L ++ L E IC+ S + +Y   + ++N    QPDV++
Sbjct: 161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLE 208

Rattus norvegicus (taxid: 10116)

>sp|Q9CXT7|TM192_MOUSE Transmembrane protein 192 OS=Mus musculus GN=Tmem192 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           +IL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 LILWILHLLFERYVQYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQHS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVM--KSLYSPLQPS 193
            P  S L +  +L ++ L E IC+ S + +YI  + ++N     PDV+  + +Y+    +
Sbjct: 161 FPEPSKLYLELILAVLAL-ELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNT 219

Query: 194 SSLEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
           +S  G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct: 220 ASETGFRTVSSLEEIVEKQEDIIVYLKRHNALLSKRLLEL 259

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
297738563	353	unnamed protein product [Vitis vinifera]	0.968	0.963	0.813	1e-164
118482875	356	unknown [Populus trichocarpa]	0.985	0.971	0.805	1e-163
224141619	356	predicted protein [Populus trichocarpa]	0.985	0.971	0.802	1e-163
356556392	356	PREDICTED: uncharacterized protein LOC10	0.985	0.971	0.761	1e-155
449452570	357	PREDICTED: uncharacterized protein LOC10	0.985	0.969	0.759	1e-154
356530429	356	PREDICTED: uncharacterized protein LOC10	0.982	0.969	0.769	1e-154
255550447	356	conserved hypothetical protein [Ricinus	0.991	0.977	0.763	1e-153
18396221	355	FRIGIDA interacting protein 1 [Arabidops	0.960	0.949	0.783	1e-151
297831684	355	hypothetical protein ARALYDRAFT_319341 [	0.960	0.949	0.778	1e-149
297812241	348	hypothetical protein ARALYDRAFT_488961 [	0.971	0.979	0.714	1e-141

>gi|297738563|emb|CBI27808.3| unnamed protein product [Vitis vinifera]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/348 (81%), Positives = 308/348 (88%), Gaps = 8/348 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH SS+TS SPEEN +FLD+LHEAPL GHRK  SI GSV YCF+LA YAILA    
Sbjct: 1   MSTERH-SSATSTSPEENTLFLDVLHEAPLFGHRKPTSIIGSVFYCFLLASYAILAVAAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FHPI  L P LLCSC V  L +TG FQQY VYQVQKIRLQGYY FSQKLKHIVRLPFA
Sbjct: 60  WMFHPIKSLGPSLLCSCDVAFLMITGAFQQYLVYQVQKIRLQGYYMFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
            TAYGTAAMLLV+VW+PHISILSIST+LRIIML+EA+CAASFMSVYIGYV+QYNSLNSQP
Sbjct: 120 TTAYGTAAMLLVMVWKPHISILSISTILRIIMLVEAVCAASFMSVYIGYVYQYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRY++GGRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYYEGGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVL-------RVRNTNNQ 293
           +S+DGSTPQVDLAHLLAARDQELRT+SAEMNQ+QSEL LARS +        +VR TNNQ
Sbjct: 240 RSNDGSTPQVDLAHLLAARDQELRTVSAEMNQIQSELSLARSLIAERDSEIQQVRTTNNQ 299

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG 341
           Y+EENERLRAILGEWS RAAKLERALEVERMSN+ELQKKI+T RNQ  
Sbjct: 300 YIEENERLRAILGEWSNRAAKLERALEVERMSNLELQKKITTLRNQQN 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482875|gb|ABK93352.1| unknown [Populus trichocarpa]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 314/355 (88%), Gaps = 9/355 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LAGYA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLAGYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVL-------RVRNTNNQ 293
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +        +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNE 347
           YVEENERLRAILGEWS RAAKLERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141619|ref|XP_002324164.1| predicted protein [Populus trichocarpa] gi|222865598|gb|EEF02729.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/355 (80%), Positives = 313/355 (88%), Gaps = 9/355 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LA YA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLASYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVL-------RVRNTNNQ 293
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +        +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNE 347
           YVEENERLRAILGEWS RAAKLERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556392|ref|XP_003546510.1| PREDICTED: uncharacterized protein LOC100810116 [Glycine max]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/356 (76%), Positives = 307/356 (86%), Gaps = 10/356 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HR++  + GSV+YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRQAARVIGSVLYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVRGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+CA  FMS++IGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVCAGCFMSLFIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLR-------VRNTNNQ 293
           ++DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +         VR TNNQ
Sbjct: 239 RTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQ 298

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ-HGPAESNEH 348
           YVEENERLRAILGEWSTRAAKLERALE ERMS +ELQ+K+ST R+Q +   E+N+H
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQH 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452570|ref|XP_004144032.1| PREDICTED: uncharacterized protein LOC101208802 [Cucumis sativus] gi|449500496|ref|XP_004161113.1| PREDICTED: uncharacterized protein LOC101230501 [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/354 (75%), Positives = 299/354 (84%), Gaps = 8/354 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ ERHASS  ++S E+NAMFLDILHEAPL GHRK     GS++YCFVL GYA LA G  
Sbjct: 1   MAAERHASSRATSS-EDNAMFLDILHEAPLFGHRKPARTVGSIIYCFVLVGYAALAIGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIFHPI + + PLLCSC V+LL LTGIFQQY VYQV KIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  WIFHPIKHFVEPLLCSCHVVLLMLTGIFQQYLVYQVHKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           +TAYGTAA+LLV+ W P IS LSI  +LR+IMLIEA+CA SFM +YI YV +YNSLNSQP
Sbjct: 120 VTAYGTAALLLVMAWEPQISALSIPIILRLIMLIEAVCAGSFMIIYISYVQKYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQ SSSLE LRYHD GRLSD+QMALLQYQRENLHFL+EEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQQSSSLEDLRYHDVGRLSDQQMALLQYQRENLHFLNEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVL-------RVRNTNNQ 293
           +S DGSTPQVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS +        ++  TN Q
Sbjct: 240 RSSDGSTPQVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIQKLLTTNKQ 299

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPAESNE 347
           YVEENERLRAILGEWSTRAAKLERALE ERMSNIELQKKIST + Q   +E++E
Sbjct: 300 YVEENERLRAILGEWSTRAAKLERALEAERMSNIELQKKISTLKKQPHASETSE 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530429|ref|XP_003533784.1| PREDICTED: uncharacterized protein LOC100795952 [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/355 (76%), Positives = 303/355 (85%), Gaps = 10/355 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HRK+  + GSV YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRKAARVIGSVFYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVQGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+ A  FMS+YIGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVSAVCFMSLYIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLR-------VRNTNNQ 293
            +DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +         VR TNNQ
Sbjct: 239 GTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRTTNNQ 298

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPA-ESNE 347
           YVEENERLRAILGEWSTRAAKLERALE ERMS +ELQ+K+ST R+Q   A E+NE
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTLRSQSYTADEANE 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550447|ref|XP_002516274.1| conserved hypothetical protein [Ricinus communis] gi|223544760|gb|EEF46276.1| conserved hypothetical protein [Ricinus communis]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/359 (76%), Positives = 302/359 (84%), Gaps = 11/359 (3%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MS ERH +S  S S EE +MF+DILHEAPL GHRK  SIFG+VVYC +LAGY++L A   
Sbjct: 1   MSVERHGNS-PSTSHEETSMFVDILHEAPLCGHRKRRSIFGAVVYCVILAGYSVLGAVAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            +FH  H L+P LL SC V LL +TGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  ILFH--HRLVPSLLSSCDVALLIITGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 117

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLV+VW+P IS LSIS LLRIIML EA+CA SFMS+YIGY+HQYNSL+SQP
Sbjct: 118 ITAYGTAAMLLVMVWKPQISFLSISALLRIIMLTEAVCAVSFMSIYIGYLHQYNSLDSQP 177

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LE LRYH GGRLSD+QMALLQYQRENLHF+SEEILRLQECLSKYE
Sbjct: 178 DILKSLYSPLQESSPLESLRYHHGGRLSDQQMALLQYQRENLHFMSEEILRLQECLSKYE 237

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF-------VLRVRNTNNQ 293
           +S DGSTPQVDLAH+LAAR+QELRTLSAEMNQLQ+ELRLARS        V +VR TNNQ
Sbjct: 238 RSSDGSTPQVDLAHMLAAREQELRTLSAEMNQLQTELRLARSLIAERDSEVQQVRTTNNQ 297

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG-PAESNEHDTA 351
           YVEENERLRAILGEWSTRAAKLERALEVER+SN+ELQKK+S  R Q   P E  E   A
Sbjct: 298 YVEENERLRAILGEWSTRAAKLERALEVERLSNLELQKKLSASRTQSNMPTEQREQHRA 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396221|ref|NP_565332.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana] gi|20197504|gb|AAM15099.1| Expressed protein [Arabidopsis thaliana] gi|21554377|gb|AAM63484.1| unknown [Arabidopsis thaliana] gi|330250899|gb|AEC05993.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/347 (78%), Positives = 297/347 (85%), Gaps = 10/347 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP I ILSIS+L RIIML+EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF-------VLRVRNTNNQ 293
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS        V RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI-STRRNQ 339
           Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK++ STRR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQ 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831684|ref|XP_002883724.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata] gi|297329564|gb|EFH59983.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/347 (77%), Positives = 293/347 (84%), Gaps = 10/347 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER  SSS   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LA YAILAAG  
Sbjct: 1   MSTERR-SSSNPMTNEENAMFLDILHEAPLFGHRKSRSLVGSYLYIVLLASYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            IFH +  L P LLC C V LL +TGIFQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  LIFHRVEQLTPSLLCCCDVALLVVTGIFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP   ILSIS+L RIIML+EA+CA  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQFHILSISSLQRIIMLVEAVCAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILSLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF-------VLRVRNTNNQ 293
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS        V RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIS-TRRNQ 339
           Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK+++  RR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVAGGRRKQ 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812241|ref|XP_002874004.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata] gi|297319841|gb|EFH50263.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/350 (71%), Positives = 288/350 (82%), Gaps = 9/350 (2%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ +R ASS    + ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MANDRRASSVNPTTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILAGYAILAAGAP 60

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 61  WILQSVEYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTA+MLL +VWRP++S+L I T+ R IM +EAI AASFM V++GYV QYNS+NSQP
Sbjct: 121 IMAYGTASMLLFMVWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+ SLYSPLQP ++LEGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct: 181 DVLNSLYSPLQP-ATLEGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLR-------VRNTNNQ 293
            +  G TPQVDLAHL+A RDQELRTLSAE++QL SEL LARS +         VRNTNNQ
Sbjct: 240 TNGSG-TPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query: 294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHGPA 343
           YV ENERLRAILGEWS RAAKLERALEVER+SN+EL+KK+S  R+Q   A
Sbjct: 299 YVAENERLRAILGEWSMRAAKLERALEVERISNLELRKKVSALRDQRQVA 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:505006239	355	FIP1 "AT2G06005" [Arabidopsis	0.960	0.949	0.714	1.9e-122
TAIR|locus:2149937	348	AT5G20580 "AT5G20580" [Arabido	0.960	0.968	0.670	3.9e-115
MGI|MGI:1920317	266	Tmem192 "transmembrane protein	0.547	0.721	0.237	0.00058
RGD|1309341	266	Tmem192 "transmembrane protein	0.435	0.575	0.231	0.00076
ZFIN|ZDB-GENE-040426-2254	271	tmem192 "transmembrane protein	0.433	0.560	0.261	0.00079

TAIR|locus:505006239 FIP1 "AT2G06005" [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 248/347 (71%), Positives = 271/347 (78%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct:     1 MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    60 WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTAAMLLVIVWRP                 EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct:   120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+K            EGLRY++G RLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct:   180 DVLKSLYSPLQPSSSMEGLRYYEG-RLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVL-------RVRNTNNQ 293
             QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +        RV +TNNQ
Sbjct:   239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query:   294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKI-STRRNQ 339
             Y+EENERLRAIL EWS RAA LERALEVERMSN ELQK++ STRR Q
Sbjct:   299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQ 345

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149937 AT5G20580 "AT5G20580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 232/346 (67%), Positives = 265/346 (76%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             M+ +R ASS   ++ ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LA YAILAAG  
Sbjct:     1 MANDRRASSVNPSTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILACYAILAAGAP 60

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    61 WILQSVDYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTA+MLL + WRP+                EAI AASFM V++GYV QYNS+NSQP
Sbjct:   121 IMAYGTASMLLFMEWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+             EGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct:   181 DVLNSLYSPLQPAAL-EGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLR-------VRNTNNQ 293
              ++  STPQVDLAHL+A RDQELRTLSAE++QL SEL LARS +         VRNTNNQ
Sbjct:   240 -TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query:   294 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ 339
             YV ENERLRAILGEWS RAAKLERALEVER+SNIEL+KK+S  R+Q
Sbjct:   299 YVAENERLRAILGEWSMRAAKLERALEVERISNIELRKKVSALRDQ 344

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1920317 Tmem192 "transmembrane protein 192" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 0.00058, P = 0.00058
 Identities = 49/206 (23%), Positives = 85/206 (41%)

Query:    37 HSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSC---G-VILLALTGIFQQYF 92
             H +F  VV  F L G   L    T    P +Y  P  + +    G +IL  L  +F++Y 
Sbjct:    58 HVVF--VVLAF-LTGVPCLYPNPTEDKCPENYTSPLKVQTAIILGKLILWILHLLFERYV 114

Query:    93 VYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHXX---XXXXXXXXX 149
              Y  +K+R +GY    +  +H+  L   I + G  A+LL++  + H              
Sbjct:   115 QYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQ-HSFPEPSKLYLELIL 173

Query:   150 XXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXXXXXEGLRYHDG-GR 206
                  E IC+ S + +YI  + ++N     PDV++               G R       
Sbjct:   174 AVLALELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNTASETGFRTVSSLEE 233

Query:   207 LSDEQMALLQYQRENLHFLSEEILRL 232
             + ++Q  ++ Y + +   LS+ +L L
Sbjct:   234 IVEKQEDIIVYLKRHNALLSKRLLEL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309341 Tmem192 "transmembrane protein 192" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 0.00076, P = 0.00076
 Identities = 37/160 (23%), Positives = 68/160 (42%)

Query:    79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
             VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct:   101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query:   137 -PHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXX 193
              P                 E IC+ S + +Y   + ++N    QPDV++           
Sbjct:   161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLEEEKCYAYPSNI 219

Query:   194 XXXEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
                 G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct:   220 ASETGFRTVSSLEEIVEKQGDIIVYLKRHNALLSKRLLEL 259

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2254 tmem192 "transmembrane protein 192" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00079, P = 0.00079
 Identities = 44/168 (26%), Positives = 67/168 (39%)

Query:    79 VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
             V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct:    99 VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query:   133 IVWRPHXXXXXXXXXXXXXXXXEAICAASFMSV-----YIGYVHQYNSLNSQPDVMKXXX 187
             I   P                   IC    +++     Y  +V ++N     PDV +   
Sbjct:   159 IA--PSSLLDANVKNLSVYLLLAIICLELLLTIICLLRYTVHVVKFNRKKPHPDVTEEER 216

Query:   188 XXXXXXXXXEGLRYHDGGRLSD--EQMA-LLQYQRENLHFLSEEILRL 232
                          + DG  L D  E+ A L+ Y +++   LS  IL L
Sbjct:   217 SYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      351       323   0.00086  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  226 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.33u 0.09s 29.42t   Elapsed:  00:00:02
  Total cpu time:  29.33u 0.09s 29.42t   Elapsed:  00:00:02
  Start:  Fri May 10 00:02:53 2013   End:  Fri May 10 00:02:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 219 RENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ---ELRTLSAEMNQLQS 275
            E L  L E +  L+E L   E  +  +  + ++  L   R     EL  L  E+ + + 
Sbjct: 750 EEELEELQERLEELEEELESLE--EALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807

Query: 276 ELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIST 335
            L      +  +     +  +E E L   + E   +  +LE  LE       EL++++  
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867

Query: 336 RRNQ 339
              +
Sbjct: 868 LEAE 871

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PF14802	236	TMEM192: TMEM192 family	100.0
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.39
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.58
PRK09039	343	hypothetical protein; Validated	92.31
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	91.14
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	90.96
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	88.82
PRK09039	343	hypothetical protein; Validated	87.99
PRK11519	719	tyrosine kinase; Provisional	84.25
PF14802	236	TMEM192: TMEM192 family	84.01
COG2433	652	Uncharacterized conserved protein [Function unknow	82.79
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	82.73
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	81.49
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	81.38

>PF14802 TMEM192: TMEM192 family

Probab=100.00  E-value=6.8e-60  Score=439.71  Aligned_cols=194  Identities=34%  Similarity=0.468  Sum_probs=180.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccccc
Q 018721           40 FGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRL  117 (351)
Q Consensus        40 ~g~~~y~~~L~~yA~~~~~~pw~~~~~~~--~~~~lL~y~~v~LWlLt~l~d~yv~~qH~KlRl~GYl~FYR~Tr~lkRl  117 (351)
                      .-+.+.+++.++.+++++++||.+-+..+  ...++++|+||+||++|+++|+|+|+||+|+|++||++|||+|+++||+
T Consensus        25 ~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~rr~  104 (236)
T PF14802_consen   25 PIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLRRL  104 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            34566677778999999999998887644  3467999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHHHhhhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhc
Q 018721          118 PFAITAYGTAAMLLVIVWRPHIS-----------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSL  186 (351)
Q Consensus       118 Pl~IvSlGNa~LLLI~a~~~~~~-----------~Ls~~~lLriil~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~ee  186 (351)
                      ||+|||+||++||++++|++++.           +++|..++++++++|++|++||++.||+||+||||+||+|||++++
T Consensus       105 Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~~~  184 (236)
T PF14802_consen  105 PLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLREE  184 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhh
Confidence            99999999999999999998772           4899999999999999999999999999999999999999999999


Q ss_pred             cC--CCCCCCCCCCCcccCCCc---hhHhhHHHHHHHHHHhHHhhHHHHHHH
Q 018721          187 YS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ  233 (351)
Q Consensus       187 ~s--~~~ps~~~~ElGfrd~g~---LlEKQADLIrYLkdHNa~LSkrIL~Lq  233 (351)
                      ++  +.+|+++++|+||+++++   ++|||||||+||||||++||+|||+||
T Consensus       185 ~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~  236 (236)
T PF14802_consen  185 YSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT  236 (236)
T ss_pred             hccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99  788999999999999887   999999999999999999999999985

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=0.79  Score=49.35  Aligned_cols=121  Identities=31%  Similarity=0.405  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHhhhhccc-----CCCCChhhhHHHhhhhhhhHHH----hhHHHHHhHHHHHHHHHHHHHHH-------Hh
Q 018721          226 SEEILRLQECLSKYEQS-----DDGSTPQVDLAHLLAARDQELR----TLSAEMNQLQSELRLARSFVLRV-------RN  289 (351)
Q Consensus       226 SkrIL~Lq~~l~kye~~-----~~g~t~qvdl~h~la~r~qelR----a~~Ae~~q~~~el~~ar~li~~~-------r~  289 (351)
                      -.+|=.+++.+.+|.+.     .||-+---.|-.==|++|++.-    .+.+|+.|+..||...+++..++       ..
T Consensus        63 R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e  142 (772)
T KOG0999|consen   63 RTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKE  142 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45888899999999876     3444444445444578887543    78889999999998888886444       44


Q ss_pred             hhhhhhhHhHHHHHHHhhhhhhHHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCccccc
Q 018721          290 TNNQYVEENERLRAILGEWSTRAAKLER---ALEVERMSNIELQKKISTRRNQHGPAESNEHD  349 (351)
Q Consensus       290 ~n~q~~eEn~rlRa~l~Ews~raakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~~~~~  349 (351)
                      .|..-..+--|||+.|.|..-|-|+|=-   -||.|   |+-|||+++.+|+++.+-|.-.|+
T Consensus       143 ~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE---NIsLQKqVs~LR~sQVEyEglkhe  202 (772)
T KOG0999|consen  143 SNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE---NISLQKQVSNLRQSQVEYEGLKHE  202 (772)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHhhhhhhhhHHHHH
Confidence            4444455667899999999999998843   46666   778999999999998776655554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.58  E-value=0.19  Score=54.95  Aligned_cols=101  Identities=31%  Similarity=0.388  Sum_probs=74.5

Q ss_pred             cCCCCChhhhHHHhhhhhhhHHH----hhHHHHHhHHHHHHHHHHHHHHHHhhhh-------hhhhHhHHHHHHHhhhhh
Q 018721          242 SDDGSTPQVDLAHLLAARDQELR----TLSAEMNQLQSELRLARSFVLRVRNTNN-------QYVEENERLRAILGEWST  310 (351)
Q Consensus       242 ~~~g~t~qvdl~h~la~r~qelR----a~~Ae~~q~~~el~~ar~li~~~r~~n~-------q~~eEn~rlRa~l~Ews~  310 (351)
                      +.||-+---+|-.==|+||.++.    .+-+|+.|.+.++..+++...|+-..|+       ...-|-.+||+-+.|...
T Consensus        11 ~~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~   90 (717)
T PF09730_consen   11 AKDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF   90 (717)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666555556555577887666    7778888888888888888755555555       445556689999999999


Q ss_pred             hHHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCc
Q 018721          311 RAAKLER---ALEVERMSNIELQKKISTRRNQHGPAES  345 (351)
Q Consensus       311 raakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~  345 (351)
                      |-++|=.   -||.|   |+-|||+++.+|+++.+-|.
T Consensus        91 rE~rll~dyselEeE---NislQKqvs~Lk~sQvefE~  125 (717)
T PF09730_consen   91 REARLLQDYSELEEE---NISLQKQVSVLKQSQVEFEG  125 (717)
T ss_pred             HHHHHhhhhHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence            9988853   46776   88899999999998765443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09039 hypothetical protein; Validated

Probab=92.31  E-value=1.9  Score=42.99  Aligned_cols=56  Identities=20%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             HHHHhhhhhhhhH---hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018721          285 LRVRNTNNQYVEE---NERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH  340 (351)
Q Consensus       285 ~~~r~~n~q~~eE---n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~  340 (351)
                      .++......|-|.   -++|++-++....+-|.||.+|++-.-..-|.+.+|.++....
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L  181 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL  181 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555554   4678888888888999999998887777788888888886543

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=91.14  E-value=14  Score=35.50  Aligned_cols=29  Identities=7%  Similarity=-0.040  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhHHHh
Q 018721           73 LLCSCGVILLA-LTGIFQQYFVYQVQKIRL  101 (351)
Q Consensus        73 lL~y~~v~LWl-Lt~l~d~yv~~qH~KlRl  101 (351)
                      +.+..=.++|. +.+.+|+++.....|.+.
T Consensus        46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~   75 (301)
T PF14362_consen   46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG   75 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            44444446775 567799999998776555

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=90.96  E-value=6.5  Score=38.56  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHH--------
Q 018721          213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV--------  284 (351)
Q Consensus       213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li--------  284 (351)
                      +-+.|+.+....+.+++-..+..+..|++.....+|+-...    +=.+.+..+.+++.+++.|+...++-.        
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~----~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~  245 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSS----AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP  245 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence            56678888888888899999999999999866666654321    112234455666666666666655432        


Q ss_pred             ---HHHHhhhhhhhhHhHHHHHH----HhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018721          285 ---LRVRNTNNQYVEENERLRAI----LGEWSTRAAKLERALEVERMSNIELQKKISTRRN  338 (351)
Q Consensus       285 ---~~~r~~n~q~~eEn~rlRa~----l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  338 (351)
                         .++.....|--+|+.++-+.    +..-..+-..|++..|.-+-.-..+.+++.+.|-
T Consensus       246 ~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~  306 (362)
T TIGR01010       246 SLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV  306 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               55666666666666666442    3333344456666666554444444444444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=88.82  E-value=1.9  Score=45.43  Aligned_cols=60  Identities=32%  Similarity=0.452  Sum_probs=41.8

Q ss_pred             CCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 018721          243 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVE  322 (351)
Q Consensus       243 ~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~e  322 (351)
                      -+|+||..-           +|+|.|++.+++.|+       +.+..-|.+..+||+|||+-..-=..   +++.|++.|
T Consensus        52 iegDTP~DT-----------lrTlva~~k~~r~~~-------~~l~~~N~~l~~eN~~L~~r~~~id~---~i~~av~~~  110 (472)
T TIGR03752        52 IEGDTPADT-----------LRTLVAEVKELRKRL-------AKLISENEALKAENERLQKREQSIDQ---QIQQAVQSE  110 (472)
T ss_pred             CCCCCccch-----------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhh
Confidence            589999864           577777776666654       56777899999999999985443333   344555554


Q ss_pred             h
Q 018721          323 R  323 (351)
Q Consensus       323 r  323 (351)
                      |
T Consensus       111 ~  111 (472)
T TIGR03752       111 T  111 (472)
T ss_pred             h
Confidence            4

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK09039 hypothetical protein; Validated

Probab=87.99  E-value=14  Score=36.91  Aligned_cols=111  Identities=17%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHhhhhccc-------CCCCCh-hhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHH
Q 018721          212 MALLQYQRENLHFLSEEILRLQECLSKYEQS-------DDGSTP-QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSF  283 (351)
Q Consensus       212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~-------~~g~t~-qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l  283 (351)
                      ++++..=+..+.-|..+|-.|+.+++--+..       ..|... .-.+...++.=+++|....++....+.++.+.++.
T Consensus        66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~q  145 (343)
T PRK09039         66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQ  145 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4455566666777777777776655421111       011100 00111111111345555555555556666666666


Q ss_pred             HHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 018721          284 VLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVE  322 (351)
Q Consensus       284 i~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~e  322 (351)
                      |..+|.-..+=.++-+-..+...|-..+-+.|+.+|+.-
T Consensus       146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655554422222222222222234444555555555543

>PRK11519 tyrosine kinase; Provisional

Probab=84.25  E-value=32  Score=37.36  Aligned_cols=40  Identities=13%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhhh
Q 018721          212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVD  251 (351)
Q Consensus       212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvd  251 (351)
                      ..-+.|+.+....+.+++=..+..+.+|++...-.+++.+
T Consensus       266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~e  305 (719)
T PRK11519        266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE  305 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence            3678899999999999999999999999987443344443

>PF14802 TMEM192: TMEM192 family

Probab=84.01  E-value=10  Score=36.46  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 018721          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY  239 (351)
Q Consensus       207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~ky  239 (351)
                      -.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus       203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l  235 (236)
T PF14802_consen  203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL  235 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445999999999999999999999999998765

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.79  E-value=14  Score=40.39  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=64.7

Q ss_pred             hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHHHH
Q 018721          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVLR  286 (351)
Q Consensus       207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~~  286 (351)
                      -..+....+.-|+++|..|..++.+|+....+++.                           +++++..|++   .. .+
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~---------------------------~l~~~~r~~~---~~-~~  471 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLES---------------------------ELERFRREVR---DK-VR  471 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHH---HH-Hh
Confidence            56777888888899999999888888866544433                           2222222222   00 11


Q ss_pred             HHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH-hhhccHHHH------HHHHHhhh
Q 018721          287 VRNTNNQYVEENERLRAILGEWSTRAAKLERALEV-ERMSNIELQ------KKISTRRN  338 (351)
Q Consensus       287 ~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~-er~~~~~~~------~~~~~~r~  338 (351)
                      .+..=.+--+++++|+.-|.|-+.+...||+.|+. ++|-.+|++      |.+.+++.
T Consensus       472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~  530 (652)
T COG2433         472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTL  530 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhH
Confidence            11112234568889999999999999999998875 346666665      44555553

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=82.73  E-value=29  Score=32.91  Aligned_cols=99  Identities=24%  Similarity=0.375  Sum_probs=66.2

Q ss_pred             HHhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhh---HHH--hhHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 018721          220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ---ELR--TLSAEMNQLQSELRLARSFVLRVRNTNNQY  294 (351)
Q Consensus       220 dHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~q---elR--a~~Ae~~q~~~el~~ar~li~~~r~~n~q~  294 (351)
                      .-...+...|-.+-+++..|.. .+..+|.-|+...|+-=+.   |+|  .+......+..|++.|..|+.+|+..=...
T Consensus        94 ~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~  172 (264)
T PF06008_consen   94 QFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKP  172 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444566677777888888877 5667888899877765544   443  566667777799999999999998863444


Q ss_pred             hhHhHHH----HHHHhhhhhhHHHHHHHH
Q 018721          295 VEENERL----RAILGEWSTRAAKLERAL  319 (351)
Q Consensus       295 ~eEn~rl----Ra~l~Ews~raakle~al  319 (351)
                      .+||+.|    +..|.+-+.+-.-|.-+|
T Consensus       173 ~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l  201 (264)
T PF06008_consen  173 QQENESLAEAIRDDLNDYNAKLQDLRDLL  201 (264)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554    555566565554444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=81.49  E-value=40  Score=34.36  Aligned_cols=37  Identities=14%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCh
Q 018721          212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTP  248 (351)
Q Consensus       212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~  248 (351)
                      .+.+.|+.+.+..+.+++-..+..+.+|++......|
T Consensus       160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~  196 (498)
T TIGR03007       160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILP  196 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            3578899999999999999999999999876444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=81.38  E-value=47  Score=36.17  Aligned_cols=120  Identities=15%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCChhhhHHHhhhhhhhHHHhhHHHHHhHHHHHHHHHHHH---------
Q 018721          214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV---------  284 (351)
Q Consensus       214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li---------  284 (351)
                      -++|+.+....+.+++-..+.++.+|++..+-.++..+....+.    ++..+.+++.+++.+........         
T Consensus       268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~----~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~  343 (726)
T PRK09841        268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLE----QIVNVDNQLNELTFREAEISQLYKKDHPTYRA  343 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            47899999999999999999999999998554455444433332    22333333333333322222221         


Q ss_pred             --HHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018721          285 --LRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN  338 (351)
Q Consensus       285 --~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~  338 (351)
                        .++...+++-.+.+.++ ..+.+.......|||..+.-|--=..|-++..+.+-
T Consensus       344 l~~~~~~L~~~~~~l~~~~-~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i  398 (726)
T PRK09841        344 LLEKRQTLEQERKRLNKRV-SAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI  398 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22222332222222222 233445555566666666655444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 48/346 (13%), Positives = 95/346 (27%), Gaps = 110/346 (31%)

Query: 3   TERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWI 62
           T R    +   S       + + H +  L   +  S+                     ++
Sbjct: 271 TTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLK------------------YL 311

Query: 63  FHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGY-YSFSQKLKHIVRL---- 117
                 L P  + +     L++     +             + +    KL  I+      
Sbjct: 312 DCRPQDL-PREVLTTNPRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIESSLNV 365

Query: 118 --P---------FAITAYGT--AAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMS 164
             P          ++         +LL ++W   I           +M++          
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------SDVMVVVNKL------ 411

Query: 165 VYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHF 224
                 H+Y+ +  QP   +S  S                       + L   + EN + 
Sbjct: 412 ------HKYSLVEKQPK--ESTIS------------IPSI------YLELKV-KLENEYA 444

Query: 225 LSEEILRLQECLSKYEQSDDGSTPQVD------LA-HLLAA----RDQELRTLSAEMNQL 273
           L   I+        ++  DD   P +D      +  HL       R    R +  +   L
Sbjct: 445 LHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 274 QSELR---LARSFVLRVRNTNNQ------YVEENE-----RLRAIL 305
           + ++R    A +    + NT  Q      Y+ +N+      + AIL
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 35/272 (12%), Positives = 82/272 (30%), Gaps = 83/272 (30%)

Query: 87  IFQQYFV--YQVQKIR--LQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISIL 142
           +F+  FV  +  + ++   +   S  +++ HI+                           
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSK------------------------ 58

Query: 143 SISTLLRIIMLIEAICA--ASFMSVYIGYVHQYNSLNSQPDVMKSL-YSPLQPSSSLEG- 198
               +   + L   + +     +  ++  V + N       +M  +     QPS      
Sbjct: 59  --DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMY 112

Query: 199 LRYHDGGRLSDEQMALLQYQ--RENLHFLSEEILRLQECLSKYEQSDD-------GSTPQ 249
           +   D  RL ++     +Y   R       +  L+L++ L +   + +       GS   
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 250 VDLAHLLAARDQEL----------------RTLSAEMNQLQS-ELRLARSFVLRVRNTNN 292
             +A L      ++                 +    +  LQ    ++  ++  R  +++N
Sbjct: 165 W-VA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 293 QYVEENE---RLRAILGEWSTRAAKLERALEV 321
             +  +     LR +L          E  L V
Sbjct: 223 IKLRIHSIQAELRRLLKSK-----PYENCLLV 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.91

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.91  E-value=3.4  Score=40.65  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=18.9

Q ss_pred             hhhhhHHHhhHHHHHhHHHHHHHHHHHH
Q 018721          257 AARDQELRTLSAEMNQLQSELRLARSFV  284 (351)
Q Consensus       257 a~r~qelRa~~Ae~~q~~~el~~ar~li  284 (351)
                      ...+.+++.+.+|.++.+.++...+..|
T Consensus       459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i  486 (597)
T 3oja_B          459 NELRAEVQQLTNEQIQQEQLLQGLHAEI  486 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345677777777777777777666666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00