Citrus Sinensis ID: 018740
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LBV4 | 355 | Uncharacterized methyltra | yes | no | 0.800 | 0.791 | 0.685 | 1e-116 | |
| Q0WPT7 | 352 | Uncharacterized methyltra | no | no | 0.783 | 0.781 | 0.5 | 7e-79 | |
| E4QJB8 | 296 | Malonyl-CoA O-methyltrans | yes | no | 0.398 | 0.472 | 0.333 | 3e-09 | |
| E3G327 | 251 | Malonyl-CoA O-methyltrans | yes | no | 0.287 | 0.402 | 0.360 | 1e-08 | |
| Q24W96 | 253 | Demethylmenaquinone methy | yes | no | 0.353 | 0.490 | 0.312 | 3e-08 | |
| Q2YY85 | 241 | Demethylmenaquinone methy | yes | no | 0.319 | 0.464 | 0.328 | 5e-08 | |
| P67063 | 241 | Demethylmenaquinone methy | yes | no | 0.319 | 0.464 | 0.328 | 6e-08 | |
| A8Z450 | 241 | Demethylmenaquinone methy | yes | no | 0.319 | 0.464 | 0.328 | 6e-08 | |
| Q6G992 | 241 | Demethylmenaquinone methy | yes | no | 0.319 | 0.464 | 0.328 | 6e-08 | |
| P67062 | 241 | Demethylmenaquinone methy | yes | no | 0.319 | 0.464 | 0.328 | 6e-08 |
| >sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 194/283 (68%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 69 KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
K +LACPICY L WI + IESAA G +QCNTCK++YSG TH D+ ASGSK Y
Sbjct: 73 KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132
Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
E M +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192
Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252
Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306
S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIM 312
Query: 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
+ SGS+ FL+ERE+ED+C+ACGLV+F RN F+M +ATKPS
Sbjct: 313 RYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/280 (50%), Positives = 188/280 (67%), Gaps = 5/280 (1%)
Query: 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
V ACP+CY+PL G S +++++ S +C C KTYS + D+T + DY E+
Sbjct: 77 QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136
Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
TE FR P +SF+YERGWRQ F GFPGP++EF + + Y K GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196
Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSS 248
LFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F N +VRAD+SRLPF S S
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGS 256
Query: 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 308
+DAVHAGAA+HCW SP+ +AEI RVLR GGVFVGTT++ P P+ ++R +I
Sbjct: 257 VDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST--PW--IIRPFQSRI 312
Query: 309 SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 348
SY +L + EI+D+C +CGL D++ F+MFTA KP
Sbjct: 313 LQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|E4QJB8|BIOC_METS6 Malonyl-CoA O-methyltransferase BioC OS=Methylovorus sp. (strain MP688) GN=bioC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ---CYEFVQQESNFPKENFLLVRA 237
++DA CG+G S + S V++LD + MLK+ VQ+ F + + V A
Sbjct: 52 VLDAGCGTGHASAALSARYRQSQVISLDIAMGMLKKTMAARSLVQRLFGFDRRH--AVCA 109
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
DI RLP A++SID V + AI + EI RVL+P G+ + +T GP L
Sbjct: 110 DIERLPLAAASIDLVWSNMAIQWCNDLDQAFGEIQRVLKPEGLLMFSTL---GPDTLKEL 166
Query: 298 SRLLRQNMMQISGSYTFLSEREIED-LCRA 326
RQ+ ++ S F+ +I D L RA
Sbjct: 167 RAATRQDNTHVTVS-RFIDMHDIGDALVRA 195
|
Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. Methylovorus sp. (strain MP688) (taxid: 887061) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
| >sp|E3G327|BIOC_ENTCS Malonyl-CoA O-methyltransferase BioC OS=Enterobacter cloacae (strain SCF1) GN=bioC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
++DA CG G SR + +G V ALD S ML + QQ ++ V+AD
Sbjct: 44 ARVLDAGCGPGGISRYWRDNGCE--VTALDLSAQMLAEARR--QQAADH------YVQAD 93
Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289
I +P AS+ D V + A+ S V E+ R+LRPGGV TT D
Sbjct: 94 IEAIPLASAQFDLVWSNLAVQWCDSLQDAVQELYRMLRPGGVLAFTTLAAD 144
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Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. Enterobacter cloacae (strain SCF1) (taxid: 701347) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
| >sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G 199
MSF ++GWR+ V + E KP G ++D CG+ S A + G
Sbjct: 43 LMSFGLDKGWRKKAV--------QTVEA-----KP--GMTMVDICCGTAQLSLELAMTVG 87
Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAGAAI 258
+ LD+SENMLK+ E + + P + + +R D LPFA +S D G +
Sbjct: 88 EQGQITGLDFSENMLKKAQENL---AGSPYRSIIELRQGDAMNLPFADNSFDGATVGWGL 144
Query: 259 HCWSSPSTGVAEISRVLRPGGVFV 282
GV E+ RV++PGG+ V
Sbjct: 145 RNLPDLEKGVQEMIRVVKPGGMVV 168
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Desulfitobacterium hafniense (strain Y51) (taxid: 138119) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+G ++ +K+ G V +D+SENML+
Sbjct: 31 FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
V +E EN LV D LPF +S D V G + + E++RVL+P
Sbjct: 89 ---VGKEKTASMENVKLVHGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145
Query: 278 GGVFV 282
GG+ V
Sbjct: 146 GGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+G ++ +K+ G V +D+SENML+
Sbjct: 31 FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
V +E EN LV D LPF +S D V G + + E++RVL+P
Sbjct: 89 ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145
Query: 278 GGVFV 282
GG+ V
Sbjct: 146 GGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+G ++ +K+ G V +D+SENML+
Sbjct: 31 FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
V +E EN LV D LPF +S D V G + + E++RVL+P
Sbjct: 89 ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145
Query: 278 GGVFV 282
GG+ V
Sbjct: 146 GGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+G ++ +K+ G V +D+SENML+
Sbjct: 31 FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
V +E EN LV D LPF +S D V G + + E++RVL+P
Sbjct: 89 ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145
Query: 278 GGVFV 282
GG+ V
Sbjct: 146 GGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain N315) GN=ubiE PE=1 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
FE K + K V+ G +D CG+G ++ +K+ G V +D+SENML+
Sbjct: 31 FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
V +E EN LV D LPF +S D V G + + E++RVL+P
Sbjct: 89 ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145
Query: 278 GGVFV 282
GG+ V
Sbjct: 146 GGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain N315) (taxid: 158879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| 225459328 | 350 | PREDICTED: uncharacterized methyltransfe | 0.985 | 0.988 | 0.665 | 1e-132 | |
| 356508108 | 352 | PREDICTED: uncharacterized methyltransfe | 0.911 | 0.909 | 0.691 | 1e-131 | |
| 388517893 | 352 | unknown [Lotus japonicus] | 0.897 | 0.894 | 0.702 | 1e-130 | |
| 224066941 | 293 | predicted protein [Populus trichocarpa] | 0.834 | 1.0 | 0.737 | 1e-130 | |
| 255545696 | 351 | S-adenosylmethionine-dependent methyltra | 0.971 | 0.971 | 0.631 | 1e-124 | |
| 297842589 | 352 | predicted protein [Arabidopsis lyrata su | 0.829 | 0.826 | 0.680 | 1e-116 | |
| 18411840 | 355 | S-adenosyl-L-methionine-dependent methyl | 0.800 | 0.791 | 0.685 | 1e-115 | |
| 449437246 | 313 | PREDICTED: uncharacterized methyltransfe | 0.817 | 0.916 | 0.657 | 1e-110 | |
| 449502868 | 376 | PREDICTED: uncharacterized methyltransfe | 0.817 | 0.763 | 0.657 | 1e-109 | |
| 224082138 | 244 | predicted protein [Populus trichocarpa] | 0.672 | 0.967 | 0.776 | 1e-107 |
| >gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/353 (66%), Positives = 277/353 (78%), Gaps = 7/353 (1%)
Query: 1 MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST---AFVETKPS 56
MA +++ F +V +PG+LG R KP SP + F AK+RASST VETKP
Sbjct: 1 MARVIAK--FPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKP- 57
Query: 57 EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
+P VE E S K++LACPICY+P TW GD LS+ES GSS C++CKK G TH D
Sbjct: 58 DPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLD 117
Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
+T A+G+K+Y E M ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177
Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE FPKEN LLVR
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVR 237
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
ADISRLPFASSS+DAVHAGAA+HCW SPS VAEISRVLRPGGVFV TTY++DGPF+++P
Sbjct: 238 ADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFSVLP 297
Query: 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
F + LRQNM++++GS+ FLSERE+EDLC ACGL F C RN FVM +ATKPS
Sbjct: 298 FLKTLRQNMVRVAGSHAFLSERELEDLCTACGLGGFTCVRNGRFVMISATKPS 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/331 (69%), Positives = 267/331 (80%), Gaps = 11/331 (3%)
Query: 30 NPSPIFIRK-FVAKI----RASSTAFV--ETKPSEPSFV---ENEASTSKNVLACPICYK 79
+P+ +F R F AK+ RASST+F+ ET P E + V ++ +S S N LACP+CY
Sbjct: 22 HPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYD 81
Query: 80 PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRM 139
LTW GD S+++ GSS QC+TC+KTY G TH D+TA G+K YGE M +TE FR+
Sbjct: 82 SLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRV 141
Query: 140 PFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198
P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP+LGGNIIDASC SGLFSR+FAKS
Sbjct: 142 PLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKS 201
Query: 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258
GLFS +VALDYSENML+QCYEF+QQE NFPKENF+LVRADISRLPF SSS+DAVHAGAA+
Sbjct: 202 GLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILVRADISRLPFVSSSVDAVHAGAAL 261
Query: 259 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 318
HCW SP VAEISRVLRPGGVFV TTYI+DGPF++IPF LRQN+ Q+SGSY FLSER
Sbjct: 262 HCWPSPLAAVAEISRVLRPGGVFVATTYILDGPFSVIPFLSSLRQNVRQVSGSYIFLSER 321
Query: 319 EIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
E+EDLCRACGLV FKC RN FVM +ATKPS
Sbjct: 322 ELEDLCRACGLVGFKCIRNGLFVMISATKPS 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/319 (70%), Positives = 260/319 (81%), Gaps = 4/319 (1%)
Query: 34 IFIRKFVAKIRASSTA--FVETKPSEPSFVEN-EASTSKNVLACPICYKPLTWIGDSSLS 90
+F KF ++RA STA V+ KP++ V++ E S N LACP+C+ LTW GDS LS
Sbjct: 33 VFPSKFPLQLRAFSTASPIVDPKPTDSIVVDDKEVRRSSNSLACPVCFDSLTWTGDSGLS 92
Query: 91 IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
++S SSLQC+TC+KTY G TH D+TA SG+K+YG+LM +TE FR+P +SF+YERGW
Sbjct: 93 VDSIPVSSLQCSTCQKTYVGNQTHLDLTATSGAKNYGDLMPASTELFRVPLISFLYERGW 152
Query: 151 RQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
RQ F VWGGFPGPEKEFELMKG+L PVLGGNIIDASC SGLFSR+FAKSGLFSLVVALDY
Sbjct: 153 RQTFSVWGGFPGPEKEFELMKGFLNPVLGGNIIDASCASGLFSRLFAKSGLFSLVVALDY 212
Query: 210 SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 269
SENML QCYEF+QQE NFPKENF+LVRADI+RLPF +SS+DAVHAGAA+HCW SPS VA
Sbjct: 213 SENMLAQCYEFIQQEDNFPKENFILVRADIARLPFVTSSVDAVHAGAALHCWPSPSAVVA 272
Query: 270 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329
EISRVLRPGGVFV TTYI+DGPF +PF +RQN+ Q SGSY FLSERE+EDLCRACGL
Sbjct: 273 EISRVLRPGGVFVATTYILDGPFTFVPFLSTVRQNIRQASGSYIFLSERELEDLCRACGL 332
Query: 330 VDFKCTRNRGFVMFTATKP 348
V FKC RN FVM +A KP
Sbjct: 333 VGFKCIRNGPFVMISAAKP 351
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/293 (73%), Positives = 251/293 (85%)
Query: 57 EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
+P VE + S+SKN+LACP+CY+P+T IG + LS++SA GSSLQC+TCKKTYSG TH +
Sbjct: 1 DPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQCSTCKKTYSGKETHLE 60
Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
+T ASGSK Y + M ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61 LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120
Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPKEN +LVR
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKENLILVR 180
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
ADI+RLPF S S+DAVHAGAAIHCW SPS VAE+SRVLRPGGVFV TTYI+DGPF+ IP
Sbjct: 181 ADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYILDGPFSFIP 240
Query: 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
F + + Q Q SG+ FLSERE+E +CRACGLV+F CTRNR F+MF+ATKPS
Sbjct: 241 FLKPISQRFTQASGNNFFLSERELEAVCRACGLVNFTCTRNRQFIMFSATKPS 293
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/350 (63%), Positives = 268/350 (76%), Gaps = 9/350 (2%)
Query: 7 SSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST-----AFVETKPSEPSF 60
+++ S LP + GNSR+ P PIF R F AK+RASS+ A +E+KP++
Sbjct: 2 AAATISYYLPNQFGNSRQFLFNPYTRPIFKRSNFAAKVRASSSTSTSTALLESKPADAVV 61
Query: 61 VENE--ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMT 118
VE E + +S N++ACPICY+PL+ IGD LS++ SL+C +CKK Y G TH ++T
Sbjct: 62 VEKEEVSRSSTNIIACPICYEPLSLIGDRLLSVD-IGECSLRCGSCKKIYYGKETHIELT 120
Query: 119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLG 178
ASG+ Y + M ATEFFR+ +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPVLG
Sbjct: 121 VASGASKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPVLG 180
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
GNIIDASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP EN + VRAD
Sbjct: 181 GNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTENLISVRAD 240
Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298
ISRLPF S+DAVHAGAAIHCW SPS VAEISRVLRPGGVFV +T+I+DGPF+ +P
Sbjct: 241 ISRLPFLFGSVDAVHAGAAIHCWPSPSAAVAEISRVLRPGGVFVASTFILDGPFSFVPLM 300
Query: 299 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 348
LRQN+ QISGS FL E E+ED+CRACGLV F R+R FVMF+A KP
Sbjct: 301 GPLRQNIAQISGSQIFLREYELEDICRACGLVGFTAIRDRQFVMFSARKP 350
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/294 (68%), Positives = 236/294 (80%), Gaps = 3/294 (1%)
Query: 59 SFVENEAST-SKNVLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGVGTHFD 116
S +E E + K VLACPICY L WI + IESA +G+ LQCNTCK++YSG TH D
Sbjct: 59 SVIEKEKTRGEKKVLACPICYNSLAWISQPNGLIESATSGTQLQCNTCKRSYSGNETHLD 118
Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
+ ASGSK Y E M +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178
Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 235
LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP +E +LV
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNREKLVLV 238
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 295
RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 239 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 298
Query: 296 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
PF + LRQ +M+ SGS+ FL+ERE+EDLC+ACGLV F RN F+M +ATKPS
Sbjct: 299 PFLKNLRQELMRYSGSHMFLNERELEDLCKACGLVGFTRVRNGPFIMLSATKPS 352
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/283 (68%), Positives = 230/283 (81%), Gaps = 2/283 (0%)
Query: 69 KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
K +LACPICY L WI + IESAA G +QCNTCK++YSG TH D+ ASGSK Y
Sbjct: 73 KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132
Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
E M +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192
Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252
Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306
S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIM 312
Query: 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
+ SGS+ FL+ERE+ED+C+ACGLV+F RN F+M +ATKPS
Sbjct: 313 RYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/289 (65%), Positives = 231/289 (79%), Gaps = 2/289 (0%)
Query: 62 ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
+NE + KN+LAC IC+ PLT S L +ES G L+C TCKK+++G +H D+T
Sbjct: 26 DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 85
Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
G+ D GE M ATE FR +SF+YERGWRQ+F V GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 86 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 144
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E +L+RADI+
Sbjct: 145 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 204
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
RLPFASSS+DAVHAGAA+HCW SPS VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 205 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 264
Query: 301 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
+ + QISGS FLSERE+E+LC ACGLVDFKC RNR FVM +ATK S
Sbjct: 265 QIEGIQQISGSRIFLSERELEELCTACGLVDFKCLRNRQFVMLSATKCS 313
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502868|ref|XP_004161765.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/289 (65%), Positives = 231/289 (79%), Gaps = 2/289 (0%)
Query: 62 ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
+NE + KN+LAC IC+ PLT S L +ES G L+C TCKK+++G +H D+T
Sbjct: 89 DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 148
Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
G+ D GE M ATE FR +SF+YERGWRQ+F V GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 149 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 207
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E +L+RADI+
Sbjct: 208 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 267
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
RLPFASSS+DAVHAGAA+HCW SPS VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 268 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 327
Query: 301 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349
+ + QISGS FLSERE+E+LC ACGLVDFKC RNR FVM +ATK S
Sbjct: 328 QIEGIQQISGSRIFLSERELEELCTACGLVDFKCLRNRQFVMLSATKCS 376
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/237 (77%), Positives = 207/237 (87%), Gaps = 1/237 (0%)
Query: 113 THFDMTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKG 171
TH ++T ASGSK YG++ P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK
Sbjct: 7 THLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKD 66
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
YLKPVLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPKEN
Sbjct: 67 YLKPVLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKEN 126
Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291
+LVRADI+RLPF S S+DAV AGAAIHCW SPS VAE+SRVLRPGGVFV TTYI+DG
Sbjct: 127 LILVRADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYILDGH 186
Query: 292 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 348
F+LIPF + + Q Q+SGS FLSERE+ED+CRACGLVDF CTRN FVMF+ATKP
Sbjct: 187 FSLIPFLKPISQRFTQVSGSNIFLSERELEDVCRACGLVDFTCTRNGRFVMFSATKP 243
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| TAIR|locus:2194759 | 355 | AT1G78140 [Arabidopsis thalian | 0.886 | 0.876 | 0.623 | 1.6e-104 | |
| TAIR|locus:2063218 | 352 | AT2G41040 [Arabidopsis thalian | 0.780 | 0.778 | 0.494 | 1.4e-71 | |
| DICTYBASE|DDB_G0290001 | 284 | DDB_G0290001 [Dictyostelium di | 0.378 | 0.468 | 0.266 | 6.3e-08 | |
| TIGR_CMR|CPS_2596 | 265 | CPS_2596 "biotin biosynthesis | 0.282 | 0.373 | 0.315 | 1.5e-07 | |
| TIGR_CMR|BA_2890 | 258 | BA_2890 "methyltransferase, Ub | 0.327 | 0.445 | 0.278 | 2.3e-07 | |
| UNIPROTKB|Q3AB55 | 244 | menG "Demethylmenaquinone meth | 0.461 | 0.663 | 0.273 | 9.7e-07 | |
| TIGR_CMR|CHY_1809 | 244 | CHY_1809 "2-heptaprenyl-1,4-na | 0.461 | 0.663 | 0.273 | 9.7e-07 | |
| POMBASE|SPBC16E9.05 | 378 | erg6 "sterol 24-C-methyltransf | 0.435 | 0.404 | 0.293 | 1.8e-06 | |
| ASPGD|ASPL0000068274 | 377 | AN7146 [Emericella nidulans (t | 0.458 | 0.427 | 0.301 | 2.4e-06 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.373 | 0.344 | 0.326 | 3.1e-06 |
| TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 199/319 (62%), Positives = 239/319 (74%)
Query: 39 FVAK-IRASSTAF-VETKP-SEPSFV---ENEASTSKNVLACPICYKPLTWIGD-XXXXX 91
FV++ ASS + VET S FV +++ K +LACPICY L WI
Sbjct: 37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIE 96
Query: 92 XXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151
QCNTCK++YSG TH D+ ASGSK Y E M +TE FR P +SF+YERGWR
Sbjct: 97 SAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWR 156
Query: 152 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
QNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSE
Sbjct: 157 QNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSE 216
Query: 212 NMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
NML+QCYE + +E NFP KE +LVRADI+RLPF S S+DAVHAGAA+HCW SPS+ VAE
Sbjct: 217 NMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAE 276
Query: 271 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330
ISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M+ SGS+ FL+ERE+ED+C+ACGLV
Sbjct: 277 ISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLV 336
Query: 331 DFKCTRNRGFVMFTATKPS 349
+F RN F+M +ATKPS
Sbjct: 337 NFTRVRNGPFIMLSATKPS 355
|
|
| TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 138/279 (49%), Positives = 181/279 (64%)
Query: 71 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELM 130
V ACP+CY+PL G +C C KTYS + D+T + DY E+
Sbjct: 78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVK 137
Query: 131 SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGL 190
TE FR P +SF+YERGWRQ F GFPGP++EF + + Y K GG ++D SCGSGL
Sbjct: 138 PITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGL 197
Query: 191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSSI 249
FSR FA+SG +S V+ALDYSENML+QC EF++ ++ F N +VRAD+SRLPF S S+
Sbjct: 198 FSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGSV 257
Query: 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 309
DAVHAGAA+HCW SP+ +AEI RVLR GGVFVGTT++ P P+ ++R +I
Sbjct: 258 DAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST--PW--IIRPFQSRIL 313
Query: 310 GSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 348
SY +L + EI+D+C +CGL D++ F+MFTA KP
Sbjct: 314 QSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352
|
|
| DICTYBASE|DDB_G0290001 DDB_G0290001 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 36/135 (26%), Positives = 69/135 (51%)
Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
+++ N+V G P + +++K L + I+D +CG+G FS++ ++ F VV
Sbjct: 15 HDKDVSSNYVKGRPSYPIEAIKMLKEDLGLTIDSKIMDLACGTGKFSKMICEAD-FKNVV 73
Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
++ S C +++ + ++ +V + LPF +S+ D + A + H W
Sbjct: 74 CVEPSPEFRVDCSYVLKEFIDDKNKDIQVVNGLATSLPFENSTFDCICAAQSFH-WYDNV 132
Query: 266 TGVAEISRVLRPGGV 280
+ EI+RVL+PGGV
Sbjct: 133 DAIKEITRVLKPGGV 147
|
|
| TIGR_CMR|CPS_2596 CPS_2596 "biotin biosynthesis protein bioC" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D G+G F+ + A + ++ V+ LD S ML F ++ N + L + AD
Sbjct: 51 VLDLGSGTGFFTDLLAST--YNQVIGLDISNEML----HFAKEHRN---KKILWLEADAH 101
Query: 241 RLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDG 290
+LP +SID +++ I W P + E+ R+L+PGG+ + TT +VDG
Sbjct: 102 KLPLQDNSIDFIYSNLVIQ-WFDPLDEAITEMLRILKPGGLLIFTT-LVDG 150
|
|
| TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
GP+ ++ + + ++ ++D + G G + + A LF VVALD +E ML+ +F
Sbjct: 27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82
Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV 280
+ + EN V + LPF+ SS D + A H +++P+ + E++R L G+
Sbjct: 83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139
Query: 281 FV 282
F+
Sbjct: 140 FI 141
|
|
| UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 50/183 (27%), Positives = 84/183 (45%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LV 235
GG +D +CG+G+F+ A+ G VV LD++ENML+ + + + + E + LV
Sbjct: 52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNI---ARYSMEKIIKLV 108
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-----TYIVDG 290
+ LPF +S D G A+ + E+ RV++PGG V T+ V
Sbjct: 109 HGNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFK 168
Query: 291 PFNLIPFSRL---LRQNMMQISGSYTFLS--------EREIEDLCRACGLVDFKCTRNRG 339
F +L L + + + G Y++L ++ I+ + GLVD KC G
Sbjct: 169 QLYWFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTG 228
Query: 340 FVM 342
++
Sbjct: 229 GIV 231
|
|
| TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 50/183 (27%), Positives = 84/183 (45%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LV 235
GG +D +CG+G+F+ A+ G VV LD++ENML+ + + + + E + LV
Sbjct: 52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNI---ARYSMEKIIKLV 108
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-----TYIVDG 290
+ LPF +S D G A+ + E+ RV++PGG V T+ V
Sbjct: 109 HGNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGGRVVNLELAHPTFPVFK 168
Query: 291 PFNLIPFSRL---LRQNMMQISGSYTFLS--------EREIEDLCRACGLVDFKCTRNRG 339
F +L L + + + G Y++L ++ I+ + GLVD KC G
Sbjct: 169 QLYWFYFEKLVPLLGKLGVGVDGPYSYLPNSVKNFPHQQVIKKMFEDLGLVDVKCYELTG 228
Query: 340 FVM 342
++
Sbjct: 229 GIV 231
|
|
| POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 51/174 (29%), Positives = 84/174 (48%)
Query: 145 IYERGWRQNFVWGGFPGPEK------EFELMKGY---LKPVLGGNIIDASCGSGLFSRIF 195
+YE GW Q+F + F E E Y +KP G ++D CG G +R
Sbjct: 85 LYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKP--GSRVLDVGCGVGGPAREI 142
Query: 196 AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA- 254
+ +LV L+ ++ + +C + + N K+ + V+ D +PF ++ D V+A
Sbjct: 143 TEFTGCNLV-GLNNNDYQISRCNNYAVKR-NLDKKQ-VFVKGDFMHMPFEDNTFDYVYAI 199
Query: 255 GAAIHCWSSPST-GV-AEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQNM 305
A +H +PS GV EI RVL+PGGVF +++ ++ IP R + N+
Sbjct: 200 EATVH---APSLEGVYGEIFRVLKPGGVFGVYEWVMSDDYDSSIPKHREIAYNI 250
|
|
| ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 53/176 (30%), Positives = 85/176 (48%)
Query: 145 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 197
+YE GW +F + F E ++ + + YL +G G ++D CG G +R K
Sbjct: 88 LYEYGWGTSFHFCRFAYGEPFYQAIARHEHYLAHQMGIKPGMKVLDVGCGVGGPAREIVK 147
Query: 198 SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GA 256
+ V L+ ++ +++ + ++E K NF V+ D ++ F +S DAV+A A
Sbjct: 148 F-TDAHVTGLNNNDYQIQRATRYAEREGLSHKLNF--VKGDFMQMQFPDNSFDAVYAIEA 204
Query: 257 AIHCWSSPSTGV-AEISRVLRPGGVF-VGTTYIVDGPFNLIPFSRLLRQNMMQISG 310
+H + GV EI RVL+PGGVF V + D N P R +R + Q G
Sbjct: 205 TVH--APELAGVYKEIMRVLKPGGVFGVYEWLMTDAYDNDNPEHRKIRLGIEQGDG 258
|
|
| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 145 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 197
IYE GW Q+F + F E ++ + + YL +G G ++D CG G +R AK
Sbjct: 90 IYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAK 149
Query: 198 -SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-G 255
+G VV L+ ++ + + + +QE + F V+ D ++ F S DAV+A
Sbjct: 150 FTGCN--VVGLNNNDYQIDRATHYAKQEKLDSQLQF--VKGDFMQMSFPDESFDAVYAIE 205
Query: 256 AAIHCWSSPSTGV-AEISRVLRPGGVF 281
A +H + GV +EI RVL+PGG F
Sbjct: 206 ATVH--APKLEGVYSEIFRVLKPGGTF 230
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LBV4 | Y1814_ARATH | 2, ., 1, ., 1, ., - | 0.6855 | 0.8005 | 0.7915 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 351 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-23 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-18 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 7e-17 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-14 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-12 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 2e-12 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-12 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-12 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-11 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-11 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 2e-11 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-10 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 9e-09 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-08 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 2e-07 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 2e-06 | |
| TIGR00452 | 314 | TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer | 8e-06 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 2e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-05 | |
| pfam08003 | 315 | pfam08003, Methyltransf_9, Protein of unknown func | 6e-05 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 8e-04 | |
| pfam03966 | 47 | pfam03966, Trm112p, Trm112p-like protein | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-23
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
+D CG+GL + A+ G + V +D S ML + + V D
Sbjct: 1 LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALARK---------RAPRKFVVGDAED 50
Query: 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
LPF S D V + +H P + EI+RVL+PGG V
Sbjct: 51 LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-18
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++D CG+G +R K + +A D S ML Q + F+ D
Sbjct: 38 VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-----KTKLSENVQFIC--GDAE 90
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
+LP SS D + + A+ S ++E++RVL+PGG+ +T+ GP L +
Sbjct: 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF---GPGTLHELRQS 147
Query: 301 LRQNMMQISGSYTFLSEREIEDLCRACG 328
Q+ ++ +LS E++ L +
Sbjct: 148 FGQHGLR------YLSLDELKALLKNSF 169
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-17
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
MSF R WR+ + L+ +KP G ++D +CG+G + + AKS
Sbjct: 29 DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73
Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
VV LD SE+ML+ ++ +N V D LPF +S DAV +
Sbjct: 74 GTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130
Query: 260 CWSSPSTGVAEISRVLRPGGVFV 282
+ + E+ RVL+PGG +
Sbjct: 131 NVTDIDKALKEMYRVLKPGGRLL 153
|
Length = 238 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-14
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 178 GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
G ++D CG G +R A+ G VV +D SE ML E + P F VR
Sbjct: 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPNVEF--VR 75
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
D LPF S DAV + + P+ +AEI+RVLRPGG
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118
|
Length = 241 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 48/219 (21%)
Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 200
+SF R WR+ V + G ++D +CG+G + AKS
Sbjct: 18 LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62
Query: 201 FSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
V +D+S ML+ V ++ + N ++AD LPF +S DAV +
Sbjct: 63 DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117
Query: 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP---------------FNLIP-FSRLLRQ 303
+ + E+ RVL+PGG V I++ N++P L+ +
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV----ILEFSKPANALLKKFYKFYLKNVLPSIGGLISK 173
Query: 304 NMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVM 342
N + +YT+L E I L + GF
Sbjct: 174 N----AEAYTYLPE-SIRAFPSQEELAAM--LKEAGFEE 205
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 24/145 (16%)
Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 200
+SF R WR+ + +L G ++D +CG+G + AK G
Sbjct: 31 LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75
Query: 201 FSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257
VV LD+SE ML V +E N V+ D LPF +S DAV
Sbjct: 76 TGEVVGLDFSEGMLA-----VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130
Query: 258 IHCWSSPSTGVAEISRVLRPGGVFV 282
+ + E+ RVL+PGG V
Sbjct: 131 LRNVPDIDKALREMYRVLKPGGRLV 155
|
Length = 239 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-12
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
+D CG+G R ++ +D S L+ E + L D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281
L S D V A +H + P + + R+L+PGGV
Sbjct: 61 LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-12
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
I+D CG+G R A++G S V +D S+ L+ E + PK F V AD
Sbjct: 1 ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERL--RDKGPKVRF--VVADAR 55
Query: 241 RLPFASSSIDAVH-AGAAIHCWSSPS--TGVAEISRVLRPGG 279
LPF S D V AG ++ S + E +R+LRPGG
Sbjct: 56 DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (152), Expect = 1e-11
Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 6/168 (3%)
Query: 129 LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 188
+ E + F+ + L L P G ++D CG+
Sbjct: 1 DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59
Query: 189 GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLPFAS 246
G + + G + VV +D S ML + V AD LPF
Sbjct: 60 GRLALLARLGGRGAYVVGVDLSPEMLAL---ARARAEGAGLGLVDFVVADALGGVLPFED 116
Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 294
S+ + + P+ + E+ RVL+PGG V + + DG
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEG 164
|
Length = 257 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 178 GGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
G ++D CG+G + I A K G + VV +D SE +++ + ++ + F+
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFIQGD 62
Query: 237 A-DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 295
++ +L +S D V + ++ P + EI RVL+PGGV IV P L
Sbjct: 63 IEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVL-----IVSDPVLLS 117
Query: 296 PFSRLLRQNM 305
LL
Sbjct: 118 ELPALLEDLE 127
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
++DA CG G SR + + G S V ALD S ML Q + + + +++L DI
Sbjct: 46 VLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQ--KDAA----DHYLA--GDIE 95
Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285
LP A+++ D + A+ + ST + E+ RV+RPGGV TT
Sbjct: 96 SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140
|
Length = 251 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-11
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
++D CG+G + A V +D S L+ + + +N +++ D
Sbjct: 1 RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELA---RKAAAALLADNVEVLKGDA 56
Query: 240 SRLPF-ASSSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIV 288
LP A S D + + +H + + E R+L+PGGV V T +
Sbjct: 57 EELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK---ENFLL 234
G ++D CG+G + A+ + V +D S ML+ N
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA------RENAKLALGPRITF 55
Query: 235 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
V+ D DAV G + ++ +L+PGG V
Sbjct: 56 VQGDAPDALDLLEGFDAVFIGGGGGDLLEL---LDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-09
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
G +D + G+G ++ + S G VV LD +ENMLK+ + ++E K N ++
Sbjct: 48 GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG---KYNIEFLQ 104
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ LPF S D V + + + E RVL+PGG V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150
|
Length = 233 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 23/152 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
GG ++D CG+G+ R+ + G V +D S + F + +
Sbjct: 23 GGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVLAGKY----- 75
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
D + A + P + ++ +L+PGGV + +T + D L
Sbjct: 76 ------------DLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFAN 123
Query: 298 SRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329
LR IS F SE ++ L G
Sbjct: 124 WHYLRPRNTHIS----FYSEESLKRLLEKAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 167 ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
EL+K LK P ++D + G G S F K + VVALDY+ENMLK V
Sbjct: 40 ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK--MNLVA 93
Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR 276
+ V LPF S D V + A+H + +AE +RV R
Sbjct: 94 DDK---------VVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138
|
Length = 226 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
G + +D CG+ +S A++ G V+ LD+SENML + V+ N LV
Sbjct: 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVH 102
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ LPF +S D V G + + E+ RV++PGG V
Sbjct: 103 GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 21/187 (11%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
WR + W + + +L P+ G I+D CGSG G +V +D
Sbjct: 104 WRSDIKW----------DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDP 152
Query: 210 SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 269
+ L Q +E V++ + K L I +L + D V + ++ SP +
Sbjct: 153 TVLFLCQ-FEAVRKLLDNDKRAILEPLG-IEQLH-ELYAFDTVFSMGVLYHRKSPLEHLK 209
Query: 270 EISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327
++ L G V T ++DG N L+P R ++ Y S +++
Sbjct: 210 QLKHQLVIKGELVLETLVIDGDLNTVLVPKDR-----YAKMKNVYFIPSVSALKNWLEKV 264
Query: 328 GLVDFKC 334
G +F+
Sbjct: 265 GFENFRI 271
|
This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235
+G ++D CGSG + + + K G V+ LD+S L + ++ +N +
Sbjct: 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI 132
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278
D + LPF DA+ G + + E+ RVL+PG
Sbjct: 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175
|
Length = 261 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 25/121 (20%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE------------NMLKQCYEFVQ--- 222
G ++D GSG F A++G + VV ++ L V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 223 -QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281
+ P +F LV + P+ ++ +A R+L+PGGV
Sbjct: 61 RELLELPDGSFDLV---LGNPPY-GPRAGDPKDNRDLY-----DRFLAAALRLLKPGGVL 111
Query: 282 V 282
V
Sbjct: 112 V 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS-RIFAKSGLFSLVVALD 208
WR ++ W + + +L P+ G I+D CG+G R+ + +LVV +D
Sbjct: 98 WRSDWKW----------DRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGA--ALVVGID 145
Query: 209 YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 268
SE L Q +E V++ + LL I +LP A + D V + ++ SP +
Sbjct: 146 PSELFLCQ-FEAVRKLLGNDQRAHLLPLG-IEQLP-ALEAFDTVFSMGVLYHRRSPLDHL 202
Query: 269 AEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326
++ L GG V T +++G N L+P R Q+ Y S +++
Sbjct: 203 LQLKDQLVKGGELVLETLVIEGDENTVLVPGDR-----YAQMRNVYFIPSAAALKNWLEK 257
Query: 327 CGLVDFKC 334
CG VD +
Sbjct: 258 CGFVDVRI 265
|
This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. Length = 315 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214
P+ G ++DA CG+GL S AK G ++V A+D SE M+
Sbjct: 52 DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108
+LACP+C PL + + L C C Y
Sbjct: 6 EILACPLCKGPLALVEVAGH--YDIEEGELVCPECGLAY 42
|
The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.96 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.96 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.93 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.92 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.9 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.9 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.89 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.87 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.87 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.86 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.86 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.85 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.85 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.85 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.83 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.83 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.83 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.83 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.83 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.82 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.82 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.81 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.79 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.78 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.77 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.77 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.76 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.74 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.73 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.73 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.71 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.69 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.69 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.69 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.69 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.69 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.69 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.68 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.67 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.67 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.66 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.66 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.65 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.64 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.62 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.61 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.61 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.6 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.6 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.6 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.59 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.59 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.59 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.58 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.57 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.56 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.53 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.53 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.53 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.53 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.52 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.52 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.51 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.51 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.51 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.49 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.49 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.48 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.48 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.48 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.47 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.47 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.47 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.47 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.46 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.46 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.45 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.42 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.4 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.4 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.39 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.37 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.37 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.36 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.35 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.35 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.35 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.34 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.33 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.33 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.32 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.3 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.29 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.29 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.27 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.27 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.24 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.24 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.21 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.19 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.18 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.18 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.17 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.16 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.15 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.14 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.11 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.1 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.09 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.09 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.07 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.07 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.07 | |
| PLN02366 | 308 | spermidine synthase | 99.03 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.0 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.99 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.98 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.97 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.97 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.93 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.92 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.91 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.91 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.88 | |
| PLN02476 | 278 | O-methyltransferase | 98.88 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.86 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.85 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.85 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.83 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.83 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.82 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.82 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.81 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.8 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.78 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.78 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.78 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.78 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.73 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.73 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.72 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.68 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.63 | |
| PLN02823 | 336 | spermine synthase | 98.61 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.61 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.59 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.58 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.55 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.55 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.55 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.54 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.54 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.54 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.52 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.52 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.5 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.46 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.46 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.44 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.43 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.42 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.41 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.4 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.39 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.37 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.37 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.36 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.36 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.35 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.31 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.28 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.24 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.24 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.2 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.2 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.19 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.18 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.18 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.15 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.15 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.13 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.13 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.12 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.08 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.07 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.06 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.06 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.01 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.99 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.97 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.97 | |
| COG2835 | 60 | Uncharacterized conserved protein [Function unknow | 97.94 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.91 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.9 | |
| PRK11827 | 60 | hypothetical protein; Provisional | 97.88 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.87 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.82 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.8 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.79 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.74 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.7 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.7 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.68 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.67 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.66 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.65 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.62 | |
| PF03966 | 68 | Trm112p: Trm112p-like protein; InterPro: IPR005651 | 97.57 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.43 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.31 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.27 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.25 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.11 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.98 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.98 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.97 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.96 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.88 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.86 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.83 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.74 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.65 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.64 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.58 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.46 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.38 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.27 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.18 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.97 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.9 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.81 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.79 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.79 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.74 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.73 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.71 | |
| PF13719 | 37 | zinc_ribbon_5: zinc-ribbon domain | 95.63 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.62 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.43 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.43 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.42 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.33 | |
| PRK00420 | 112 | hypothetical protein; Validated | 95.22 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.17 | |
| PHA01634 | 156 | hypothetical protein | 95.14 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.05 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.98 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.95 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.65 | |
| PF13717 | 36 | zinc_ribbon_4: zinc-ribbon domain | 94.59 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.57 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 94.55 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.52 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.4 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.2 | |
| PF14803 | 34 | Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. | 94.15 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.13 | |
| COG1645 | 131 | Uncharacterized Zn-finger containing protein [Gene | 94.12 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.11 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.09 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 93.85 | |
| PF08271 | 43 | TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 | 93.7 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 93.66 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.63 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 93.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.56 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.36 | |
| PRK09678 | 72 | DNA-binding transcriptional regulator; Provisional | 93.12 | |
| COG3809 | 88 | Uncharacterized protein conserved in bacteria [Fun | 92.93 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 92.92 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 92.9 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.81 | |
| PHA00626 | 59 | hypothetical protein | 92.79 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.78 | |
| TIGR01206 | 54 | lysW lysine biosynthesis protein LysW. This very s | 92.41 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 92.29 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.19 | |
| COG1997 | 89 | RPL43A Ribosomal protein L37AE/L43A [Translation, | 92.13 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.1 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.04 | |
| PRK00398 | 46 | rpoP DNA-directed RNA polymerase subunit P; Provis | 91.94 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.9 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.7 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 91.7 | |
| KOG1088 | 124 | consensus Uncharacterized conserved protein [Funct | 91.56 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.55 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.47 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 91.24 | |
| PF09297 | 32 | zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do | 91.24 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 91.17 | |
| PF08274 | 30 | PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01 | 90.97 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.81 | |
| PRK00464 | 154 | nrdR transcriptional regulator NrdR; Validated | 90.8 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.72 | |
| PF07191 | 70 | zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 | 90.63 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 90.54 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.49 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.41 | |
| PF14353 | 128 | CpXC: CpXC protein | 90.12 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.12 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 90.06 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 90.02 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 90.01 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.0 | |
| PF02150 | 35 | RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I | 89.91 | |
| smart00659 | 44 | RPOLCX RNA polymerase subunit CX. present in RNA p | 89.83 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.78 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 89.73 | |
| smart00661 | 52 | RPOL9 RNA polymerase subunit 9. | 89.69 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 89.62 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 89.6 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 89.47 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 89.42 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 89.35 | |
| PRK00432 | 50 | 30S ribosomal protein S27ae; Validated | 89.32 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 89.17 | |
| PF01096 | 39 | TFIIS_C: Transcription factor S-II (TFIIS); InterP | 89.16 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.92 | |
| PF09538 | 108 | FYDLN_acid: Protein of unknown function (FYDLN_aci | 88.59 | |
| PF03604 | 32 | DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa | 88.57 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 88.0 | |
| COG2888 | 61 | Predicted Zn-ribbon RNA-binding protein with a fun | 87.97 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 87.84 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.82 | |
| PF11781 | 36 | RRN7: RNA polymerase I-specific transcription init | 87.81 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 87.77 | |
| PF06677 | 41 | Auto_anti-p27: Sjogren's syndrome/scleroderma auto | 87.57 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 87.24 | |
| PF13248 | 26 | zf-ribbon_3: zinc-ribbon domain | 86.94 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 86.87 | |
| smart00440 | 40 | ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo | 86.81 | |
| PF11253 | 127 | DUF3052: Protein of unknown function (DUF3052); In | 86.6 | |
| PF04606 | 47 | Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I | 86.49 | |
| COG1326 | 201 | Uncharacterized archaeal Zn-finger protein [Genera | 86.48 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 86.4 | |
| PF13453 | 41 | zf-TFIIB: Transcription factor zinc-finger | 86.3 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.11 | |
| PF03811 | 36 | Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0 | 85.91 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.53 | |
| smart00531 | 147 | TFIIE Transcription initiation factor IIE. | 85.43 | |
| PF14205 | 55 | Cys_rich_KTR: Cysteine-rich KTR | 85.34 | |
| PF03119 | 28 | DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f | 85.21 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.15 | |
| TIGR02300 | 129 | FYDLN_acid conserved hypothetical protein TIGR0230 | 85.01 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 84.78 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 84.7 | |
| COG4306 | 160 | Uncharacterized protein conserved in bacteria [Fun | 84.65 | |
| smart00834 | 41 | CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C | 84.64 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 84.63 | |
| PRK10220 | 111 | hypothetical protein; Provisional | 84.53 | |
| KOG2906 | 105 | consensus RNA polymerase III subunit C11 [Transcri | 84.5 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 84.37 | |
| PF08792 | 33 | A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I | 84.35 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 84.34 | |
| TIGR00686 | 109 | phnA alkylphosphonate utilization operon protein P | 84.09 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 84.08 | |
| PRK12495 | 226 | hypothetical protein; Provisional | 83.82 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 83.81 | |
| PRK14890 | 59 | putative Zn-ribbon RNA-binding protein; Provisiona | 83.81 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 83.49 | |
| COG3677 | 129 | Transposase and inactivated derivatives [DNA repli | 83.48 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 83.47 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 83.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 82.89 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 82.79 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 82.76 | |
| PF12760 | 46 | Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int | 82.36 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 81.89 | |
| COG1096 | 188 | Predicted RNA-binding protein (consists of S1 doma | 81.83 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 81.51 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 81.47 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 81.46 | |
| TIGR00244 | 147 | transcriptional regulator NrdR. Members of this al | 81.34 | |
| COG1327 | 156 | Predicted transcriptional regulator, consists of a | 81.21 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 81.19 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 81.12 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 80.99 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 80.96 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 80.72 | |
| PRK14811 | 269 | formamidopyrimidine-DNA glycosylase; Provisional | 80.69 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 80.51 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 80.35 | |
| PF07754 | 24 | DUF1610: Domain of unknown function (DUF1610); Int | 80.31 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 80.11 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=212.12 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=163.9
Q ss_pred eeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHH
Q 018740 114 HFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSR 193 (351)
Q Consensus 114 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~ 193 (351)
.+...++..+..||.. |++.|+..++.||+.. ...+...+|.+|||||||||.++.
T Consensus 12 ~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~---------------i~~~~~~~g~~vLDva~GTGd~a~ 67 (238)
T COG2226 12 KVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRAL---------------ISLLGIKPGDKVLDVACGTGDMAL 67 (238)
T ss_pred HHHHHHHhhHHHHHhh---------cccccCcchHHHHHHH---------------HHhhCCCCCCEEEEecCCccHHHH
Confidence 3344555666777776 8899999999999865 333333478999999999999999
Q ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHh
Q 018740 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISR 273 (351)
Q Consensus 194 ~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~ 273 (351)
.+++....++|+|+|+|+.|++.|+++.... | ..+++|+.+|++++||++++||+|++.+.|++++|++++|+|++|
T Consensus 68 ~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~-~--~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~R 144 (238)
T COG2226 68 LLAKSVGTGEVVGLDISESMLEVAREKLKKK-G--VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYR 144 (238)
T ss_pred HHHHhcCCceEEEEECCHHHHHHHHHHhhcc-C--ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHH
Confidence 9999976789999999999999999998875 2 344999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEEEeeccCCCCCcchHHHHHHHH-Hhh----------------ccCCccCCCHHHHHHHHHHCCCeEEE--E
Q 018740 274 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQ----------------ISGSYTFLSEREIEDLCRACGLVDFK--C 334 (351)
Q Consensus 274 ~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~s~~~l~~ll~~aGf~~v~--~ 334 (351)
+|||||++++.+............+..+-.. ... ......+.+.+++.++++++||..+. .
T Consensus 145 VlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 145 VLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred hhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEe
Confidence 9999999999887764322222222211111 000 11233477899999999999998776 5
Q ss_pred EecCeEEEEEEecC
Q 018740 335 TRNRGFVMFTATKP 348 (351)
Q Consensus 335 ~~~g~~~~~~a~kp 348 (351)
...|...++.+.|+
T Consensus 225 ~~~G~~~l~~g~K~ 238 (238)
T COG2226 225 LTFGIVALHRGYKP 238 (238)
T ss_pred eeeeeEEEEEEecC
Confidence 67888899988885
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=218.29 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=93.7
Q ss_pred ceeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHH
Q 018740 113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192 (351)
Q Consensus 113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~ 192 (351)
.++.-+++..+..||.. |.+.+++.++.||+.. .+.+...++.+|||+|||||.++
T Consensus 7 ~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~ 62 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVT 62 (233)
T ss_dssp ---------------------------------------SHH---------------HHHHT--S--EEEEET-TTSHHH
T ss_pred HHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHH
Confidence 34555666777888876 7888999999999854 33345566889999999999999
Q ss_pred HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHH
Q 018740 193 RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 271 (351)
Q Consensus 193 ~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i 271 (351)
..+++. ++..+|+|+|+|++|++.|++++... ...+++++++|++++|+++++||+|++.+.+++++|+.++|+|+
T Consensus 63 ~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~ 139 (233)
T PF01209_consen 63 RELARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREM 139 (233)
T ss_dssp HHHGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred HHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence 999886 55679999999999999999998875 24599999999999999999999999999999999999999999
Q ss_pred HhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH------------hh--------ccCCccCCCHHHHHHHHHHCCCeE
Q 018740 272 SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM------------MQ--------ISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
+|+|||||.+++.+...... +++..+...+ .. ......+.+.+++.++++++||+.
T Consensus 140 ~RVLkPGG~l~ile~~~p~~----~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRN----PLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SS----HHHHHHHHH-----------------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCC----chhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988876432 2222111111 00 112334678899999999999997
Q ss_pred EE--EEecCeEEEEEEec
Q 018740 332 FK--CTRNRGFVMFTATK 347 (351)
Q Consensus 332 v~--~~~~g~~~~~~a~k 347 (351)
++ ...+|...+++|+|
T Consensus 216 v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 216 VEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------
T ss_pred ccccccccccccccccCC
Confidence 77 56788888888876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=199.06 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=132.5
Q ss_pred hccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCce
Q 018740 171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++++|+++++|
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3445556789999999999999988876 455699999999999999988754210111468999999999999999999
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH----Hh---h--------ccCCccC
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MM---Q--------ISGSYTF 314 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----~~---~--------~~~~~~~ 314 (351)
|+|++..++||++|+..+++++.|+|||||.+++.++..+......+........ .. . ......+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988754321111111100000 00 0 0112357
Q ss_pred CCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEec
Q 018740 315 LSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK 347 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~k 347 (351)
++.+++.++++++||++++.. .+|...++.+++
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 899999999999999988743 456667777654
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=195.98 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=130.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccCCCCCccccCccchhhhcCChhhhhhhhhh
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
.++||+|+++|.... +.++|+++|+++..++||++++........... ...+.+..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a----------- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA----------- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence 489999999986543 679999999999999999999874332221110 00111111
Q ss_pred hhhhhcCCCCCcHH--HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHhhhC
Q 018740 151 RQNFVWGGFPGPEK--EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES 225 (351)
Q Consensus 151 r~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~ 225 (351)
|+.|.+.+++.+.. ..+.+.+.+. .+..+|||+|||+|.++..+++..+. ..++|+|+|+.|++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 44555555543321 2233444433 34568999999999999999877542 3789999999999999875
Q ss_pred CCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 226 g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+++.+.++|+.++|+++++||+|++.... ..++++.|+|||||.+++.++..+
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 467889999999999999999999986541 236899999999999999887653
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-23 Score=176.87 Aligned_cols=210 Identities=21% Similarity=0.234 Sum_probs=159.1
Q ss_pred ceeeecccCCCCCccccCccchhhhcCChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHH
Q 018740 113 THFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192 (351)
Q Consensus 113 g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~ 192 (351)
..+..+++..+..||.+ |+..+.+..+.|+..+ ...+.+..+.++||++||||..+
T Consensus 60 ~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDia 115 (296)
T KOG1540|consen 60 RLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIA 115 (296)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhH
Confidence 33444566666677776 7888888888897544 55677777899999999999999
Q ss_pred HHHHHhCCC------CeEEEEeCCHHHHHHHHHHHhhhCCCCC-CCeEEEEecCCCCCCCCCceeeEEeccccccCCChH
Q 018740 193 RIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265 (351)
Q Consensus 193 ~~l~~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~g~~~-~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~ 265 (351)
..+.+.-.. .+|+++|+|+.|+..++++..+. +... ..+.++.+|++++||++.+||..++.+.|..+++++
T Consensus 116 Fril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~ 194 (296)
T KOG1540|consen 116 FRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ 194 (296)
T ss_pred HHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH
Confidence 988887443 79999999999999999998664 3322 349999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH--------HHHHHhh--------ccCCccCCCHHHHHHHHHHCCC
Q 018740 266 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--------LRQNMMQ--------ISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 266 ~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~s~~~l~~ll~~aGf 329 (351)
+.|+|++|+|||||++.+.++..........+... +...+.. ......+.+.+++..+.+++||
T Consensus 195 k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF 274 (296)
T KOG1540|consen 195 KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGF 274 (296)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCC
Confidence 99999999999999999988765332111111111 1111111 1224457899999999999999
Q ss_pred eEEE---EEecCeEEEEEEec
Q 018740 330 VDFK---CTRNRGFVMFTATK 347 (351)
Q Consensus 330 ~~v~---~~~~g~~~~~~a~k 347 (351)
..+. ...+|...++.+-|
T Consensus 275 ~~~~~ye~lt~Gv~aIH~giK 295 (296)
T KOG1540|consen 275 SSVNGYENLTFGVVAIHSGIK 295 (296)
T ss_pred ccccccccceeeeeeeehhcc
Confidence 8875 44556666655544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=180.48 Aligned_cols=177 Identities=23% Similarity=0.276 Sum_probs=135.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.++++++.. ..++++++.+|+..+++++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCCC
Confidence 4555666667889999999999999999887 45569999999999999999987654 2468999999999988888
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc-----------hHHHHHH-----HHHhhccC
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLR-----QNMMQISG 310 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~ 310 (351)
++||+|++..+++|++++..+++++.++|+|||.+++.+.......... +...... ........
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQES 192 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998776543211100 1100000 00000112
Q ss_pred CccCCCHHHHHHHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 311 SYTFLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
...+++.+++.++|+++||++++ ....|....+++.|
T Consensus 193 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 193 TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 34578999999999999999876 44567888888876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=183.09 Aligned_cols=168 Identities=20% Similarity=0.201 Sum_probs=128.4
Q ss_pred HHHHHhccCC-----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
.+.+...+.. .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.... +. ..++.++++|+.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~-g~-~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ-GL-SDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEEcCcc
Confidence 3445555544 567899999999999999999875 459999999999999999887665 22 357999999999
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCC----cchHHHHHHHHHhhccCCccCCC
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN----LIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
++|+++++||+|++..+++|++|+..+++++.++|||||.+++.++....... ..+........+........+.+
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s 258 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCS 258 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999998876432211 11111111111111111223568
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
.+++.++++++||.+++...
T Consensus 259 ~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 259 TSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HHHHHHHHHHCCCCeeEeee
Confidence 99999999999999988543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=169.30 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=129.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
+..+.+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|+++... ..++.+..+|+...|
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD 112 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC
Confidence 345667777777888999999999999998887754 45999999999999999987543 357999999999989
Q ss_pred CCCCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+++++||+|++..+++|++ ++..++++++++|||||.+++.++....... +.......... ....+.+.+++.
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~ 187 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIKK--RKYTLIPIQEYG 187 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHHh--cCCCCCCHHHHH
Confidence 8899999999999999986 7889999999999999999999886543211 11112222111 134567999999
Q ss_pred HHHHHCCCeEEEEEe
Q 018740 322 DLCRACGLVDFKCTR 336 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~ 336 (351)
++|+++||+++....
T Consensus 188 ~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 188 DLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHCCCCeeeEEe
Confidence 999999999988554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=178.56 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++.... + ...++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~-~-~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD-P-VTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc-C-cccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999988765 9999999999999999876543 1 1357999999999998888899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH------HHHHhhcc-CCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL------RQNMMQIS-GSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~s~~~l~~ll~~aG 328 (351)
.+|||+.|+..+++++.++|||||.+++.+++.... .+...+ ........ ....+++++++.++++++|
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999875311 111111 11111111 1224789999999999999
Q ss_pred CeEEEE
Q 018740 329 LVDFKC 334 (351)
Q Consensus 329 f~~v~~ 334 (351)
|++++.
T Consensus 282 f~i~~~ 287 (322)
T PLN02396 282 VDVKEM 287 (322)
T ss_pred CeEEEE
Confidence 998873
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=171.14 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=122.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.|+.+++...... ....++.+...+++++|..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence 4566666667788999999999999999888875 37999999999987654321111 0135788888999888754
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc--chHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+||+|+++++++|+++|..+|++++++|+|||.+++.+...++.... .+. . .+......+..++..++..+|
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~----ry~k~~nv~flpS~~~L~~~L 261 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-D----RYAKMKNVYFIPSVSALKNWL 261 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-H----HHHhccccccCCCHHHHHHHH
Confidence 589999999999999999999999999999999999998765543211 111 0 111122244567999999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||+.+++..
T Consensus 262 ~~aGF~~V~i~~ 273 (314)
T TIGR00452 262 EKVGFENFRILD 273 (314)
T ss_pred HHCCCeEEEEEe
Confidence 999999998654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=166.67 Aligned_cols=183 Identities=21% Similarity=0.170 Sum_probs=127.2
Q ss_pred CChhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 018740 139 MPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218 (351)
Q Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 218 (351)
|.+.++..+..|++... +.+...... +.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+
T Consensus 26 n~~~s~g~~~~wr~~~~-----------~~l~~~~~~--~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 26 NRFISFNQDVRWRAELV-----------KTILKYCGR--PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNL 91 (226)
T ss_pred hhhccCCCcHHHHHHHH-----------HHHHHhcCC--CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHH
Confidence 33444555556665442 233333332 6799999999999999999885 349999999999999998
Q ss_pred HHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 219 ~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
++ ..++++|++++|+++++||+|++..+++|++|+..++++++|+|||.+ .++.....+.. ....+.
T Consensus 92 ~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~-~ile~~~p~~~-~~~~~~ 158 (226)
T PRK05785 92 VA-----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV-GFIAMGKPDNV-IKRKYL 158 (226)
T ss_pred hc-----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce-EEEEeCCCCcH-HHHHHH
Confidence 63 135789999999999999999999999999999999999999999942 23322222211 001111
Q ss_pred HHHH--------HHHhh--------ccCCccCCCHHHHHHHHHHC-CCeEEEEEecCeEEEEEEecC
Q 018740 299 RLLR--------QNMMQ--------ISGSYTFLSEREIEDLCRAC-GLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 299 ~~~~--------~~~~~--------~~~~~~~~s~~~l~~ll~~a-Gf~~v~~~~~g~~~~~~a~kp 348 (351)
..+. ..+.. ......+.+.+++.++++++ ++...+...+|...+++++|.
T Consensus 159 ~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 159 SFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEEEEccccEEEEEEEeeC
Confidence 1100 00000 11233477899999999995 444455778899999999885
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=169.92 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=122.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~ 246 (351)
.+...+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.... |. ..++.++++|+.+++ +.+
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~-g~-~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK-GV-SDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CC-ccceEEEEcCHHHHhhhcC
Confidence 3444444 3467999999999999999999876 9999999999999999988765 21 357899999998764 567
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH----HHHHHHHhh----ccCCccCCCHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS----RLLRQNMMQ----ISGSYTFLSER 318 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~s~~ 318 (351)
++||+|++..+++|+.+|..+++++.++|||||++++..++.+... ....+ ......... .......++++
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 189 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPE 189 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCHH
Confidence 8999999999999999999999999999999999999877754210 00000 000000000 00112457899
Q ss_pred HHHHHHHHCCCeEEEEEe
Q 018740 319 EIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~~~~ 336 (351)
++.++++++||+++...-
T Consensus 190 ~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 190 QVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHHHHHCCCeEeeeee
Confidence 999999999999887543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-21 Score=158.80 Aligned_cols=139 Identities=27% Similarity=0.452 Sum_probs=110.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . ++.....+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45578999999999999999988877 99999999999887 1 223444444455556889999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
+.+|+|++|+..+|+++.++|||||++++.++.... .....+...... ...|..+++.+++.++++++||+++
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 999999999999999999999999999999998642 111112111111 2257789999999999999999988
Q ss_pred E
Q 018740 333 K 333 (351)
Q Consensus 333 ~ 333 (351)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=172.60 Aligned_cols=164 Identities=22% Similarity=0.323 Sum_probs=124.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+.+..+.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++...... + ...++.++.+|++++|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~-~-~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL-G-NDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc-C-CCCCeEEEeCCHHHCCC-c
Confidence 4556667666788999999999999999999875 36999999999987654432211 0 13579999999999988 7
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
++||+|+|..+++|+.|+..+|++++++|+|||.+++.+...++......+. ...+......+...+..++..+|++
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~~~~lps~~~l~~~L~~ 264 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRNVYFIPSVPALKNWLER 264 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCccceeCCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999887654332211100 0111222223445699999999999
Q ss_pred CCCeEEEEEec
Q 018740 327 CGLVDFKCTRN 337 (351)
Q Consensus 327 aGf~~v~~~~~ 337 (351)
+||++++....
T Consensus 265 aGF~~i~~~~~ 275 (322)
T PRK15068 265 AGFKDVRIVDV 275 (322)
T ss_pred cCCceEEEEeC
Confidence 99999886543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=167.67 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=122.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||-|.++..+++.|. +|+|+|+++.+++.|+.++.+. ...+++.+.+++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence 4688999999999999999999996 9999999999999999998877 566889999998887666899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhh-ccCCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQ-ISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~s~~~l~~ll~~aG 328 (351)
.||||++||..+++.+.+++||||.+++++++.. ...++.. +...... -+....++.++++..++...|
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt----~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT----LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC----HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 9999999999999999999999999999999864 2222211 1111111 111235888999999999999
Q ss_pred CeEEE
Q 018740 329 LVDFK 333 (351)
Q Consensus 329 f~~v~ 333 (351)
+.+..
T Consensus 208 ~~~~~ 212 (243)
T COG2227 208 LKIID 212 (243)
T ss_pred ceEEe
Confidence 98776
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=166.66 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=118.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++ .+++++++|+.+++ ++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence 34566666667889999999999999999998766799999999999999975 35789999998875 56
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhhc--cCCccCCCHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQI--SGSYTFLSER 318 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~s~~ 318 (351)
++||+|+++.++||++|+..++++++++|||||.+++..+.... ......... +....... .....+.+.+
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 79999999999999999999999999999999999997654211 011111111 11111111 1123456899
Q ss_pred HHHHHHHHCCCeEEE
Q 018740 319 EIEDLCRACGLVDFK 333 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~ 333 (351)
++.++|+++||++..
T Consensus 167 ~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 167 GYAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHHhCCCeEEE
Confidence 999999999997544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=164.08 Aligned_cols=161 Identities=19% Similarity=0.321 Sum_probs=124.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH--HHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+++...+..-.+++|||||||+|+++..++.+|+ ..|+|+|+++....+.+- ++... ...+......++++|.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~----~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ----DPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC----CccEEEcCcchhhccc
Confidence 5677778777899999999999999999999986 579999999876555332 22111 2334444456788886
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+.||+|+|.+||+|..+|...|++++..|+|||.+++.+...++.....-.- ...+......+...|...+..+|
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P---~~rYa~m~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP---EDRYAKMRNVWFIPSVAALKNWL 255 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc---CCcccCCCceEEeCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999877654322110 11233445566777999999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||+.++++.
T Consensus 256 ~r~gF~~v~~v~ 267 (315)
T PF08003_consen 256 ERAGFKDVRCVD 267 (315)
T ss_pred HHcCCceEEEec
Confidence 999999998653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=164.00 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=116.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++..+..+++++|+|+.|++.|+++.. ..+++++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence 34679999999999999988887555699999999999999998743 246889999999999988999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.+++|++++..+++++.++|+|||.+++..+.... .+.... ... ....+.+.+++.++++++||+.++..
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~---~~~--~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRF---FAD--VWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHH---hhh--hhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999887654321 111111 111 01234689999999999999988854
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 256 ~ 256 (340)
T PLN02490 256 R 256 (340)
T ss_pred E
Confidence 4
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=174.59 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=128.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++.... ..++.+..+|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 34556666666677899999999999999888764 459999999999999999876543 4679999999999888
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
++++||+|++..+++|++|+..++++++++|+|||.+++.++..........+ ...... .....++.+++.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~----~~~~~~--~g~~~~~~~~~~~~l 402 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF----AEYIKQ--RGYDLHDVQAYGQML 402 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH----HHHHHh--cCCCCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999998876432221111 111111 124567899999999
Q ss_pred HHCCCeEEEEE
Q 018740 325 RACGLVDFKCT 335 (351)
Q Consensus 325 ~~aGf~~v~~~ 335 (351)
+++||.++...
T Consensus 403 ~~aGF~~i~~~ 413 (475)
T PLN02336 403 KDAGFDDVIAE 413 (475)
T ss_pred HHCCCeeeeee
Confidence 99999988644
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=160.83 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=121.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++. ....++++|++.+|++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence 45566666655678999999999999999988765 9999999999999998862 3356889999999998
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|+++.+++|..|+..++.++.++|+|||.++++++..+.. +.+...+...........+++.+++.++++
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875431 222222222222223456889999999999
Q ss_pred HCCCeE
Q 018740 326 ACGLVD 331 (351)
Q Consensus 326 ~aGf~~ 331 (351)
+.|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 998864
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-19 Score=156.16 Aligned_cols=179 Identities=23% Similarity=0.301 Sum_probs=135.0
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+...++.+|||+|||+|.++..+++.++ ..+++|+|+++.+++.+++++... +. ..++.++.+|+.+.++..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-GL-SGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-cc-ccCeEEEecccccCCCCC
Confidence 344444555678999999999999999998875 579999999999999999987653 11 357899999999888777
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH--------HHhh--------ccC
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------NMMQ--------ISG 310 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~ 310 (351)
+.||+|++..+++|+.++..+++++.++|+|||.+++.+...............+.. .... ...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAES 199 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHH
Confidence 899999999999999999999999999999999999877654322110000000000 0000 000
Q ss_pred CccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEecC
Q 018740 311 SYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP 348 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~kp 348 (351)
...+++.+++.++++++||++++.. ..|.+.++.|+||
T Consensus 200 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 200 IRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 1246788999999999999988844 4588899999987
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=154.69 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=129.8
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
+...+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. . ..++.++.+|+.+.+++.+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCC
Confidence 344444446789999999999999999988764 689999999999999998765 2 4678999999999887778
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH----hh----c--------cCC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQ----I--------SGS 311 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~----~--------~~~ 311 (351)
+||+|++..+++|+.++..+++++.+.|+|||.+++.+...................+ .. . ...
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESI 185 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999988775432211111111111100 00 0 001
Q ss_pred ccCCCHHHHHHHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 312 YTFLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 312 ~~~~s~~~l~~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
..+++.+++.++|+++||+++. ....+...+++++|
T Consensus 186 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 186 RAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 2467899999999999998766 44455556777765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=156.67 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=120.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
...++.+|||+|||+|..+..+++. ++..+|+|+|+++.|++.|+++.... + ..++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-g--~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-G--YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-C--CCCEEEEEcchhhCCCCCCceeEE
Confidence 3456889999999999988776665 55558999999999999999987765 2 368999999999999888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
+++.+++|++++..+++++.++|||||++++.+...... ...........+.. .....++.+++.++++++||..+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYAG--CVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHhc--cccCCCCHHHHHHHHHHCCCCce
Confidence 999999999999999999999999999999988765432 11111111111111 12235688999999999999887
Q ss_pred EE
Q 018740 333 KC 334 (351)
Q Consensus 333 ~~ 334 (351)
+.
T Consensus 227 ~i 228 (272)
T PRK11873 227 TI 228 (272)
T ss_pred EE
Confidence 64
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=161.81 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=123.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|||||||+|..+..+++. .+..+++|+|+|+.|++.|++++... +. ..++.++++|+.++|++ .+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~-~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KA-PTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CC-CCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4679999999999999888873 45679999999999999999998764 11 34799999999988764 4999999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---------------hccCCccCCCH
Q 018740 255 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSE 317 (351)
Q Consensus 255 ~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~ 317 (351)
+.++||+++. ..++++++++|+|||.+++.+..........+.....+..+. .........+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999999743 588999999999999999988654322222221111111100 01112335689
Q ss_pred HHHHHHHHHCCCeEEEEEec-CeEEEEEEecCC
Q 018740 318 REIEDLCRACGLVDFKCTRN-RGFVMFTATKPS 349 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp~ 349 (351)
++..++|+++||..++++.. ..+..+.|+||.
T Consensus 212 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~ 244 (247)
T PRK15451 212 ETHKARLHKAGFEHSELWFQCFNFGSLVALKAE 244 (247)
T ss_pred HHHHHHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence 99999999999998875433 334556666654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=137.58 Aligned_cols=95 Identities=35% Similarity=0.579 Sum_probs=84.1
Q ss_pred EEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccC
Q 018740 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 261 (351)
||+|||+|..+..+++. +..+|+|+|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 345999999999999999998653 45669999999999999999999999999999
Q ss_pred CChHHHHHHHHhcccCCcEEEE
Q 018740 262 SSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 262 ~d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=153.97 Aligned_cols=164 Identities=29% Similarity=0.324 Sum_probs=127.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+...+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..++++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence 455666677778899999999999999998875 5679999999999999999874333 57899999999988888
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCC---CcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++||+|++..+++|+.++..+++++.++|+|||.+++.++..+... ............+.. .....+....+.+
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 162 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLPG 162 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999886533211 111122222222221 1234456788999
Q ss_pred HHHHCCCeEEEEEe
Q 018740 323 LCRACGLVDFKCTR 336 (351)
Q Consensus 323 ll~~aGf~~v~~~~ 336 (351)
+++++||.++....
T Consensus 163 ~l~~aGf~~~~~~~ 176 (241)
T PRK08317 163 LFREAGLTDIEVEP 176 (241)
T ss_pred HHHHcCCCceeEEE
Confidence 99999998876443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=159.21 Aligned_cols=154 Identities=13% Similarity=0.145 Sum_probs=117.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.|++.|++++... + ...++.++++|+.+++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-H-SEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-C-CCCCeEEEECChhhCCCC--CCCEEee
Confidence 56799999999999999998863 5679999999999999999988764 1 135789999999988764 4899999
Q ss_pred ccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---------------hccCCccCCCH
Q 018740 255 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSE 317 (351)
Q Consensus 255 ~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~ 317 (351)
..++||+++ +..++++++++|+|||.+++.++.........+.+......+. .........+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 999999964 4689999999999999999998754322122222222111111 11124456799
Q ss_pred HHHHHHHHHCCCeEEEE
Q 018740 318 REIEDLCRACGLVDFKC 334 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~ 334 (351)
+++.++++++||..++.
T Consensus 209 ~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 209 ETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHcCCchHHH
Confidence 99999999999987763
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-19 Score=146.21 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=110.3
Q ss_pred CCCeEEEEcCccCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 253 (351)
.+.+|||+|||+|.++..++ +.++..+++|+|+|+.|++.|+++++.. + .++++++++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~-~--~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL-G--LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-T--STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-c--ccccceEEeehhccccccC-CCeeEEE
Confidence 46799999999999999999 4566779999999999999999988776 2 458999999999977 55 7899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh-ccCCc-cCCCHHHHHHHHHHCC
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-ISGSY-TFLSEREIEDLCRACG 328 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~l~~ll~~aG 328 (351)
+..+++|+.++..+++++.+.|++||.+++..+..... ....+......... ..... .. +.+++..+++++|
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE--LPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH--HHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH--HHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 99999999999999999999999999999988872110 00111111111011 00011 11 7788999999987
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=153.90 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=114.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCC----CeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~----~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
+.+|||+|||+|.++..|++.|. +|+|+|+++.|++.|+++..... .... ++++.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence 46799999999999999999987 99999999999999999854431 1011 3667777877764 4599999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc-chHHHH-HHHHHhhccCC-ccCCCHHHHHHHHHHCCCe
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRL-LRQNMMQISGS-YTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~s~~~l~~ll~~aGf~ 330 (351)
|..++||+.||..++..+.+.|||||.+++++.+....... .-++.. ..........+ ..+.++.++..+++..|++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999987533211 111122 22211111222 3588999999999999998
Q ss_pred EEE
Q 018740 331 DFK 333 (351)
Q Consensus 331 ~v~ 333 (351)
+..
T Consensus 244 v~~ 246 (282)
T KOG1270|consen 244 VND 246 (282)
T ss_pred hhh
Confidence 765
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=149.56 Aligned_cols=146 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... |. ..++.++..|+...|++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-gl-~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-GL-QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-CC-CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 3799999999999999998876679999999999999999988764 22 45789999999776654 589999999999
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEecC
Q 018740 259 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 259 ~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
+|+.++..++++++++|+|||.+++.++..+...... .......+.+..++.++++++||++++....+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE-----------HEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc-----------ccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 9999999999999999999999999887543211000 00012236789999999999999998866543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-18 Score=145.38 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=111.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.... + ..++.+..+|+.+++++ +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE-N--LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCcceEEecChhhCCcC-C
Confidence 344445555678999999999999999999876 9999999999999999987765 2 35688999999887764 5
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeec-cCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++..++||++ +...+++++.++|+|||.+++.... .+.. +. ..+....++++++.+++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~el~~~~ 160 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC-------------TVGFPFAFKEGELRRYY 160 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC-------------CCCCCCccCHHHHHHHh
Confidence 799999999999886 4569999999999999997654433 2211 00 00112456889999998
Q ss_pred HHCCCeEEEE
Q 018740 325 RACGLVDFKC 334 (351)
Q Consensus 325 ~~aGf~~v~~ 334 (351)
+ ||+++..
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8988774
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-18 Score=152.10 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=116.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.++++ ..++.++.+|+..+. ++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence 455566666678899999999999999999987777999999999999999886 457889999998765 45
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhhcc-CCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQIS-GSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~s~~~ 319 (351)
++||+|+++.++||++|+..+++++.++|+|||.+++..+..-.. ........ +...+.... ....+.+..+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 689999999999999999999999999999999999976432110 00000110 111111110 1234567889
Q ss_pred HHHHHHHCCCeE
Q 018740 320 IEDLCRACGLVD 331 (351)
Q Consensus 320 l~~ll~~aGf~~ 331 (351)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 999999999864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=147.69 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=131.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++..+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.+++++... |. ..++++...|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~-gl-~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR-GL-EDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc-CC-CcccEEEeccccccc--
Confidence 5678888999999999999999999999999997 569999999999999999998887 33 358999999988875
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
+.||.|++..++||+.. -..+++.++++|+|||.+++.+......... .....+...+- +.....+..++...
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiF---PgG~lPs~~~i~~~ 210 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIF---PGGELPSISEILEL 210 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCC---CCCcCCCHHHHHHH
Confidence 44999999999999975 7899999999999999999988765432211 22222333322 24456788999999
Q ss_pred HHHCCCeEEEEEecC
Q 018740 324 CRACGLVDFKCTRNR 338 (351)
Q Consensus 324 l~~aGf~~v~~~~~g 338 (351)
.+++||.+.+....+
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998865544
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=149.90 Aligned_cols=164 Identities=20% Similarity=0.194 Sum_probs=115.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++..+|.+|||||||.|.++..+++++ +++|+|+.+|+++.+.+++++... |. ..++++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-gl-~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-GL-EDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-TS-SSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEEeeccccCC-
Confidence 5677888888999999999999999999999994 459999999999999999999877 43 4679999999988763
Q ss_pred CCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc--h-HHHHHHHHHhhccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--P-FSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
+||.|++..+++|+. +...+++++.++|+|||++++.+.......... . ....+...+ .+ ....++..++
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FP-gg~lps~~~~ 201 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FP-GGYLPSLSEI 201 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--ST-TS---BHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee--CC-CCCCCCHHHH
Confidence 899999999999995 557999999999999999998777653211000 0 001122222 12 3346788999
Q ss_pred HHHHHHCCCeEEEEEecC
Q 018740 321 EDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~~g 338 (351)
...+++.||++......+
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999988866544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=138.82 Aligned_cols=161 Identities=21% Similarity=0.298 Sum_probs=121.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeE-EEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~-~~~~d~~~lp- 243 (351)
+..+..++.......|||||||||..-..+-.. |..+|+++|+++.|-+.+.+.+++. ...++. |+.++.+++|
T Consensus 65 Fs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~ 140 (252)
T KOG4300|consen 65 FSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQ 140 (252)
T ss_pred HhhhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcc
Confidence 344555666665668999999999987766432 3569999999999999999998887 367777 9999999998
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhc----cCCccCCCHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSERE 319 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~ 319 (351)
++++++|+|++..+|....||.+.|+++.|+|+|||++++.+....-. .++..+.+..... ......++ .+
T Consensus 141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~lt-rd 215 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLT-RD 215 (252)
T ss_pred cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEe-hh
Confidence 889999999999999999999999999999999999999998876422 2222222222221 00111223 45
Q ss_pred HHHHHHHCCCeEEEEE
Q 018740 320 IEDLCRACGLVDFKCT 335 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~ 335 (351)
..+.|+++-|...+..
T Consensus 216 ~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 216 TGELLEDAEFSIDSCK 231 (252)
T ss_pred HHHHhhhcccccchhh
Confidence 6678889999887744
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=143.34 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=110.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++... ..++.+..+|+...+++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-C
Confidence 344555555567999999999999999999875 9999999999999999887665 23477888888766654 5
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+||+|++..+++|++ +...+++++.++|+|||++++.+.......+. .......++++++.++++
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-------------~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-------------HMPFSFTFKEDELRQYYA 160 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-------------CCCcCccCCHHHHHHHhC
Confidence 799999999999985 34689999999999999976655432211000 011224679999999986
Q ss_pred HCCCeEEEEE
Q 018740 326 ACGLVDFKCT 335 (351)
Q Consensus 326 ~aGf~~v~~~ 335 (351)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58877643
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=147.85 Aligned_cols=141 Identities=28% Similarity=0.425 Sum_probs=116.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++ .+++.++.+|+.+.++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence 356899999999999999999988778999999999999998763 2478899999999988889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
++||+.++..+++++.++|+|||.+++.++..+.. ..+...... ....+++.+++.++++.+ |..+..
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFGQ--HGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEE
Confidence 99999999999999999999999999988765421 112211111 235678999999999998 876553
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=133.38 Aligned_cols=106 Identities=27% Similarity=0.379 Sum_probs=88.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~ 255 (351)
|+.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... + ..+++.++++|+ .... ..+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~-~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-G-LSDRITFVQGDAEFDPD-FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-T-TTTTEEEEESCCHGGTT-TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-C-CCCCeEEEECccccCcc-cCCCCCEEEEC
Confidence 477999999999999999999655679999999999999999998443 1 268999999999 3333 24569999999
Q ss_pred c-ccccC---CChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~-vl~h~---~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
. .++++ .+...+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999975
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=146.38 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=113.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++. ++..+++|+|+|+.|++.|+++... .++.+...+...++.++++
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence 33455679999999999998888753 5556999999999999999886432 4567777887777777789
Q ss_pred eeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH----h---hccCCccCCCHHH
Q 018740 249 IDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----M---QISGSYTFLSERE 319 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~s~~~ 319 (351)
||+|+++.++||++++. .+++++.++++ |.+++.+...... ....+........ . ....+..+|++++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~e 206 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAE 206 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-HHHHHHHHHHHhccCceeeccchHHHHhhcCHHH
Confidence 99999999999999864 79999999998 5666666554310 0000000000000 0 0122356899999
Q ss_pred HHHHHHHCCCeEEEEEecCeEE
Q 018740 320 IEDLCRACGLVDFKCTRNRGFV 341 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~~~g~~~ 341 (351)
+.+++++ ||++...+.+...+
T Consensus 207 l~~ll~~-Gf~~~~~~~~~~~~ 227 (232)
T PRK06202 207 LAALAPQ-GWRVERQWPFRYLL 227 (232)
T ss_pred HHHHhhC-CCeEEeccceeeEE
Confidence 9999999 99987766554433
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=147.71 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=122.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++++|..+++++|. +.+++.+++++... |. ..+++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-gl-~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GV-ADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-Cc-cceEEEEecCccCCCCC
Confidence 34556666666778999999999999999999998889999997 78999999888765 32 46799999999876654
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---ccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~l 320 (351)
. +|+|++.+++|++.+. ..+|+++++.|+|||++++.+...+... .+....+...... ......+.+.+++
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHH
Confidence 3 6999999999998765 4789999999999999999987654322 1221212211111 0112234468999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++|+++||+.++.+
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999988653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=146.01 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=107.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..++.+...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence 356999999999999999999875 9999999999999999988776 3478889999877665 67899999999
Q ss_pred ccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+++|+. +...+++++.++|+|||++++.........+ ........+++.++.++++. |++++.
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-------------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-------------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-------------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 999986 4468899999999999997776543221100 00112346789999999865 887764
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=140.78 Aligned_cols=157 Identities=19% Similarity=0.276 Sum_probs=114.4
Q ss_pred HHHHhccC--CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 167 ELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 167 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+.+..++. ..++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|++++... +. ..++.+.++|+..++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~-~~-~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGR-DV-AGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEECChhhCC-
Confidence 34444444 34578999999999999999998765 9999999999999999988765 11 247999999998876
Q ss_pred CCCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREI 320 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l 320 (351)
++||+|++..+++|++. ...+++++.+++++++++.+.... ........+...+.. ...+..+++.+++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEecHHHH
Confidence 78999999999999864 458899999998876655542111 111111122222211 1223457799999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++++++||+++...
T Consensus 191 ~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 191 ERALGELGWKIVREG 205 (219)
T ss_pred HHHHHHcCceeeeee
Confidence 999999999998754
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=130.97 Aligned_cols=122 Identities=22% Similarity=0.190 Sum_probs=102.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||+|||+|..+..++...+..+|+|+|+++.|++.|++++... + ..+++++.+|+.+++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-~--l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-G--LKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc-C--CCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 78999999999999999988777789999999999999999998877 2 3469999999998876 77999999865
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+.++..++++++++|+|||.+++.... ....++.++.+..|+.+.+.
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~---------------------------~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGR---------------------------DPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------------ChHHHHHHHHHhcCceEeee
Confidence 457889999999999999999986432 12346778888889987663
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=138.70 Aligned_cols=160 Identities=17% Similarity=0.241 Sum_probs=121.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (351)
+.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++... ...+.+...++...+ ..
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence 4555555556688999999999999999988765 8999999999999999887665 346788888887764 34
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH-----HHHHHhh-ccCCccCCCHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-----LRQNMMQ-ISGSYTFLSERE 319 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~s~~~ 319 (351)
.+.||+|++..+++|++++..+++.+.+.|+|||.+++..+.... ....... ....... ...+..+++.++
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNL---KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSE 188 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCCh---HHHHHHHhhHHHHhhhcCcccCchhhcCCHHH
Confidence 578999999999999999999999999999999999988765321 1000000 0000001 112345789999
Q ss_pred HHHHHHHCCCeEEEEE
Q 018740 320 IEDLCRACGLVDFKCT 335 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~ 335 (351)
+.++++++||+++...
T Consensus 189 ~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 189 LAAWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHHHCCCeEeeee
Confidence 9999999999988753
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=133.95 Aligned_cols=153 Identities=17% Similarity=0.268 Sum_probs=116.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-p~ 244 (351)
+.+.+++.+ +.+|||+|||.|.++..|.+. .+....|+|++++.+..+.++ .+.++++|++. + .|
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence 456677665 789999999999999999886 356999999999999888864 56789999965 4 38
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH--------HHHHHhhccCCccCCC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--------LRQNMMQISGSYTFLS 316 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s 316 (351)
++++||.|+++.+|+++.+|..+|+|+.|+ |...+++.|+...+......+-. +-..|+ ..++.++.|
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY-dTPNih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY-DTPNIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc-CCCCccccc
Confidence 899999999999999999999999998766 66888888875322111000000 000000 233556889
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
..++++++++.|+++++...
T Consensus 148 i~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 148 IKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999988543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-16 Score=141.15 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred HHHHHhccCC---CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~i~~~~~d~~ 240 (351)
.+.+..++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++.... +....++.+...|+.
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3444444432 2567999999999999999999875 99999999999999999876530 001246788888886
Q ss_pred CCCCCCCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccC--CccCCC
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG--SYTFLS 316 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s 316 (351)
.+ +++||+|+|..+++|+++.. .+++.+.+ +.+||.++...+.. .....+..+...+..... ...+++
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s 279 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT----LYYDILKRIGELFPGPSKATRAYLHA 279 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc----hHHHHHHHHHhhcCCCCcCceeeeCC
Confidence 64 47899999999999998653 45666664 45655544322211 111222222222222111 123458
Q ss_pred HHHHHHHHHHCCCeEEEEEe
Q 018740 317 EREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~ 336 (351)
+++++++++++||++.....
T Consensus 280 ~eel~~lL~~AGf~v~~~~~ 299 (315)
T PLN02585 280 EADVERALKKAGWKVARREM 299 (315)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999877443
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=135.16 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=116.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 255 (351)
.+.+|||+|||+|.++..+++.+. .++|+|+++.+++.+++++... + ..++.+...|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKD-P--LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999988765 7999999999999999987765 1 22688999998877644 3789999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH-HHH-HHh----h-ccCCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQ-NMM----Q-ISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~-~~~-~~~----~-~~~~~~~~s~~~l~~ll~~aG 328 (351)
++++|+.++..+++++.++|+|||.+++.+++.+. ..+... ... ... . ......+++..++.++++++|
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999988765421 111111 000 010 1 111235778999999999999
Q ss_pred CeEEEEE
Q 018740 329 LVDFKCT 335 (351)
Q Consensus 329 f~~v~~~ 335 (351)
|++++..
T Consensus 196 ~~i~~~~ 202 (224)
T TIGR01983 196 LRVKDVK 202 (224)
T ss_pred Ceeeeee
Confidence 9998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-17 Score=125.03 Aligned_cols=95 Identities=32% Similarity=0.514 Sum_probs=80.4
Q ss_pred EEEEcCccCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-c
Q 018740 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A 256 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~ 256 (351)
|||+|||+|..+..+.+.. +..+++|+|+|+.|++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 3469999999999999999998765 458999999999999888999999995 5
Q ss_pred ccccCCCh--HHHHHHHHhcccCCc
Q 018740 257 AIHCWSSP--STGVAEISRVLRPGG 279 (351)
Q Consensus 257 vl~h~~d~--~~~l~~i~~~LkpgG 279 (351)
+++|+.+. ..+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 589999999999998
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=134.58 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=107.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-p~ 244 (351)
+.+.+.+. ++.+|||+|||+|.++..+++.. ...++|+|+|+.+++.+++ .+++++++|+.+ + ++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF 71 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence 44555554 36799999999999999887664 3478999999999998865 246788899865 4 46
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH-HHh-------h--ccCCccC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMM-------Q--ISGSYTF 314 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~-~~~-------~--~~~~~~~ 314 (351)
++++||+|+++.++||++|+..+++++.+.++ .+++..++...+. ........ ... . ...+.++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR---VRWSILTKGRMPVTGELPYDWYNTPNIHF 145 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH---HHHHHHhCCccccCCCCCccccCCCCccc
Confidence 67899999999999999999999999988755 4455544421110 00000000 000 0 1123468
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 018740 315 LSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~ 335 (351)
++.+++.++++++||++++..
T Consensus 146 ~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 146 CTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 899999999999999998844
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=131.61 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=101.7
Q ss_pred EEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 205 ~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|+|+|++|++.|+++..........+++++++|+.++|+++++||+|++..+++|++|+..+|++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998775432000135799999999999999999999999999999999999999999999999999998
Q ss_pred eeccCCCCCcchHHHHHH-------HHHhh----c----cCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEe
Q 018740 285 TYIVDGPFNLIPFSRLLR-------QNMMQ----I----SGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTAT 346 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~-------~~~~~----~----~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~ 346 (351)
++................ ..... + .....+.+++++.++|+++||+.++.. ..|...++++-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 159 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM 159 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence 876532110000000000 00000 0 111357799999999999999887743 45555666553
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-18 Score=129.09 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=66.4
Q ss_pred EEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--CCCceeeEEeccccc
Q 018740 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--ASSSIDAVHAGAAIH 259 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--~~~~fD~V~~~~vl~ 259 (351)
||||||+|.++..+.+..+..+++|+|+|+.|++.+++++.... ..+......+..+... ..++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777899999999999999988887751 2344444444443321 125899999999999
Q ss_pred cCCChHHHHHHHHhcccCCcEE
Q 018740 260 CWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~l 281 (351)
|++++..++++++++|+|||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-15 Score=126.60 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=105.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+...+...++.+|||+|||+|.++..+++.++..+|+++|+++.+++.+++++... + ..++.++.+|+.. ++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-~--~~~i~~~~~d~~~-~~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-G--CGNIDIIPGEAPI-EL- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-C--CCCeEEEecCchh-hc-
Confidence 34455666666788999999999999999999887789999999999999999988765 2 3578999988742 33
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
.++||+|++....++ ...+++++.+.|+|||++++..... -+..++.++++
T Consensus 95 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 95 PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENLHSALAHLE 145 (187)
T ss_pred CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhHHHHHHHHH
Confidence 357999999876543 4678999999999999998854321 13457778999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
+.||..++
T Consensus 146 ~~g~~~~~ 153 (187)
T PRK08287 146 KCGVSELD 153 (187)
T ss_pred HCCCCcce
Confidence 99997655
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=127.85 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+...++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++... ..+++++.+|+.+.+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence 344444445567999999999999999999886 9999999999999999998766 457889999987654 45
Q ss_pred ceeeEEeccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh
Q 018740 248 SIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
+||+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------- 144 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------- 144 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence 8999999988776653 24679999999999999998765421
Q ss_pred hccCCccCCCHHHHHHHHHHCCCeEEEEEecCe
Q 018740 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 339 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~ 339 (351)
...++.+.+++.||........+.
T Consensus 145 ---------~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 145 ---------GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred ---------ChHHHHHHHHhCCCeEEEEEEeec
Confidence 256788999999998877655544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=131.78 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=120.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+......+|.|+|||+|..+..|+++.|...++|+|-|++|++.|+++ .++++|..+|+.... +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence 356666777778899999999999999999999999999999999999999887 689999999999875 46
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH------HHHHHhh-ccCCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQ-ISGSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~s~~~ 319 (351)
...|+++++.+|++++|-..+|..+...|.|||+|.+..|..-.. +....... +...+.. ........+...
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 789999999999999999999999999999999999988753211 11111111 1111111 011345667888
Q ss_pred HHHHHHHCCCeE
Q 018740 320 IEDLCRACGLVD 331 (351)
Q Consensus 320 l~~ll~~aGf~~ 331 (351)
+-++|...+-++
T Consensus 170 Yy~lLa~~~~rv 181 (257)
T COG4106 170 YYELLAPLACRV 181 (257)
T ss_pred HHHHhCccccee
Confidence 888888776553
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=132.95 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++.+. .|+|+|+|+.|++.|++++... +. ..++.+..+|+.. .+++||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~-~~-~~~i~~~~~d~~~---~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEA-GL-AGNITFEVGDLES---LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CC-ccCcEEEEcCchh---ccCCcCEEEEc
Confidence 4567999999999999999998876 8999999999999999987665 11 2478999988543 46789999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHHHHHHHHHCCCeE
Q 018740 256 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 256 ~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
.+++|++++ ..+++++.+.++++++ +...+.. ........+...+.. ......+++..++.++++++||++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYT----PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCcc----HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 999998765 4778888887654443 3322111 111111111111111 112345678999999999999998
Q ss_pred EEEEe
Q 018740 332 FKCTR 336 (351)
Q Consensus 332 v~~~~ 336 (351)
++...
T Consensus 210 ~~~~~ 214 (230)
T PRK07580 210 VRTER 214 (230)
T ss_pred Eeeee
Confidence 87543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=129.90 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh---------CCCCCCCeEEEEecCCCCCCC-
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLPFA- 245 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~g~~~~~i~~~~~d~~~lp~~- 245 (351)
.++++|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+..... .-....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999999988 9999999999999864432110 000135789999999887643
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
.+.||.|+...+++|++.. ...++.+.++|||||++++.+...+.... .+.....+.+++.++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------~gpp~~~~~~eL~~~ 175 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM---------------AGPPFSVSPAEVEAL 175 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------CCcCCCCCHHHHHHH
Confidence 4679999999999999643 47899999999999998888776431100 011235789999998
Q ss_pred HHHCCCeEEE
Q 018740 324 CRACGLVDFK 333 (351)
Q Consensus 324 l~~aGf~~v~ 333 (351)
+.. +|.+..
T Consensus 176 f~~-~~~i~~ 184 (213)
T TIGR03840 176 YGG-HYEIEL 184 (213)
T ss_pred hcC-CceEEE
Confidence 874 454433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=148.93 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=115.3
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC--CCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~--~lp~ 244 (351)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++.... .+++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence 4556666666677999999999999999999865 999999999999987653211 468999999996 4677
Q ss_pred CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++++||+|++..+++|+++. ..+++++.++|||||++++.+.......... ......++.+...+.+
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 168 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK-----------RKNNPTHYREPRFYTK 168 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc-----------ccCCCCeecChHHHHH
Confidence 78899999999999999874 6899999999999999999775432110000 0111234556789999
Q ss_pred HHHHCCCeEEE
Q 018740 323 LCRACGLVDFK 333 (351)
Q Consensus 323 ll~~aGf~~v~ 333 (351)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998765
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=124.29 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=109.6
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCce
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
...++...-.++||+|||.|.++..|+.+.. +++++|+|+.+++.|++++... ++++++++|+.+. .+.++|
T Consensus 36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCe
Confidence 3346665667999999999999999999975 9999999999999999998764 7999999999775 367899
Q ss_pred eeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 250 DAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 250 D~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
|+|++..+++++.+. ..+++.+.+.|+|||.+++.++... .... -.+.+..+.+.++|.+
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~--------------~c~~---wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA--------------NCRR---WGHAAGAETVLEMLQE 170 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH--------------HHHH---TT-S--HHHHHHHHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC--------------cccc---cCcccchHHHHHHHHH
Confidence 999999999999764 3789999999999999999776421 1111 1134588999999998
Q ss_pred CCCeEEEEEe------cCeEEEEEEecCC
Q 018740 327 CGLVDFKCTR------NRGFVMFTATKPS 349 (351)
Q Consensus 327 aGf~~v~~~~------~g~~~~~~a~kp~ 349 (351)
. |..|+... +....+...+||.
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 171 H-LTEVERVECRGGSPNEDCLLARFRNPV 198 (201)
T ss_dssp H-SEEEEEEEEE-SSTTSEEEEEEEE--S
T ss_pred H-hhheeEEEEcCCCCCCceEeeeecCCc
Confidence 5 76666332 2345666677764
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=126.04 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.++++++.. + ..+++++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-~--~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-G--LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh-C--CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 367999999999999999988877779999999999999999887765 2 357999999998875 367899999876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+.+....++.+.++|+|||.+++.
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 345667889999999999999975
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=128.24 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.6
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCC
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS 247 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~ 247 (351)
.+...++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.+++... .++.++.+|+... ++ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence 46777889999999999999999998754568999999999999887765442 6789999998652 22 25
Q ss_pred ceeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++. +.+|. .+++++.++|||||.++++.+..... .... +... . ++..+++
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~--------------~~~~-~-~~~~~~l 198 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD--------------PKEI-F-KEEIRKL 198 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC--------------HHHH-H-HHHHHHH
Confidence 69999843 44443 45899999999999999964432100 0000 0011 1 3445999
Q ss_pred HHCCCeEEEEEecCe----EEEEEEec
Q 018740 325 RACGLVDFKCTRNRG----FVMFTATK 347 (351)
Q Consensus 325 ~~aGf~~v~~~~~g~----~~~~~a~k 347 (351)
+++||+.++.+..+. +.++.+++
T Consensus 199 ~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 199 EEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999766542 46666654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=140.88 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=116.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++... .++++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4556666777788999999999999999998864 35999999999999999988632 3578888888765
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCC-CcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++||+|++..+++|+.+ +..+++++.++|||||.+++.+...+... ....+.. ... .+ .....+.+++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~---~yi--fp-~g~lps~~~i~~ 299 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN---KYI--FP-NGCLPSVRQIAQ 299 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce---eee--cC-CCcCCCHHHHHH
Confidence 468999999999999964 46899999999999999999877544221 1112211 110 11 223567888888
Q ss_pred HHHHCCCeEEEEEecCe
Q 018740 323 LCRACGLVDFKCTRNRG 339 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g~ 339 (351)
+++ .||.+.+....+.
T Consensus 300 ~~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 300 ASE-GLFVMEDWHNFGA 315 (383)
T ss_pred HHH-CCcEEEEEecChh
Confidence 766 5898877655443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=147.04 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=93.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~ 254 (351)
++.+|||+|||+|.++..+++..+..+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999999998888889999999999999999876554 457888999998887 77899999999
Q ss_pred ccccccCC-------------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~-------------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.++||+. ++..+|+++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99998762 4578999999999999999998753
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=128.93 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCC--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp--~~~~~fD~V~ 253 (351)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... + ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~--~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-G--LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-C--CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 467999999999999999998877779999999999999999988765 2 36899999999 7766 6678999999
Q ss_pred eccccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.....+.. ....+++++.++|+|||.+++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1467899999999999999997654
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=127.40 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=85.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++..+..+++|+|+|+.|++.|+++ .+++.+.++|+.+ |+++++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 46789999999999999998875556999999999999999875 3567788999888 88899999999999
Q ss_pred ccccCC--ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 257 vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+++|++ +...+++++.+++ ++.+++.+...+
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999995 2357889999987 567777776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=115.40 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=91.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~ 245 (351)
..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... ...++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhh
Confidence 3445555555677999999999999999999876679999999999999999987765 24578899888765 3333
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.++||+|++....++ ...+++++.+.|+|||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999776543 35889999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=127.70 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCCeEEEEcCccCHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|+|||||.|.++.. ++..++..+++|+|+++.+++.|++.+....+. ..++.|..+|+.+.+...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-SKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-cCCcEEEECchhhcccccCCcCEEEE
Confidence 678999999998854433 334577789999999999999999988542122 56899999999886533578999999
Q ss_pred ccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 255 ~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
. +++++ .++.++++++.+.|+|||++++..... .+.. -+...++++++ ||++.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G------------~r~~------LYp~v~~~~~~------gf~~~ 256 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG------------ARAF------LYPVVDPCDLR------GFEVL 256 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccc------------hHhh------cCCCCChhhCC------CeEEE
Confidence 9 99988 688999999999999999999965311 1111 12233444443 99988
Q ss_pred EEEe-cCe--EEEEEEecCC
Q 018740 333 KCTR-NRG--FVMFTATKPS 349 (351)
Q Consensus 333 ~~~~-~g~--~~~~~a~kp~ 349 (351)
.++. .+. -.++.++|+.
T Consensus 257 ~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 257 SVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred EEECCCCCceeeEEEEEeec
Confidence 7543 332 3666777764
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=123.95 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=103.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+.+.++..+++++||+|||.|+.+..|++.|. .|+++|.|+..++.+++.+... ...+.....|+....++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence 34445555678999999999999999999998 9999999999999998877666 55699999999888764 67
Q ss_pred eeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 249 IDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
||+|++..+++|+..+ ..+++.+...++|||++++.+.... .....+ ......+.+.++...+.
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~-~d~p~~------------~~~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET-PDYPCP------------SPFPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB---SSS--S------------S--S--B-TTHHHHHTT-
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc-CCCCCC------------CCCCcccCHHHHHHHhC-
Confidence 9999999999998644 4789999999999999998776432 111000 01223456678888776
Q ss_pred CCCeEEE
Q 018740 327 CGLVDFK 333 (351)
Q Consensus 327 aGf~~v~ 333 (351)
||++++
T Consensus 161 -dW~il~ 166 (192)
T PF03848_consen 161 -DWEILK 166 (192)
T ss_dssp -TSEEEE
T ss_pred -CCeEEE
Confidence 687776
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-14 Score=120.17 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=107.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++... +....++.++.+|+.+. +.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~-~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFEP-FRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecccccc-ccc
Confidence 344455544567899999999999999999885 49999999999999999988765 22112288889988663 345
Q ss_pred CceeeEEeccccccC-----------------C----ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCW-----------------S----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 305 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~-----------------~----d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
++||+|+++..+.+. . ....+++++.++|+|||.+++..+.
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------ 150 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------ 150 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------
Confidence 589999987554321 1 1346799999999999998876432
Q ss_pred hhccCCccCCCHHHHHHHHHHCCCeEEEE----EecCeEEEEEEe
Q 018740 306 MQISGSYTFLSEREIEDLCRACGLVDFKC----TRNRGFVMFTAT 346 (351)
Q Consensus 306 ~~~~~~~~~~s~~~l~~ll~~aGf~~v~~----~~~g~~~~~~a~ 346 (351)
....+++.++++++||++... ...+...+..++
T Consensus 151 --------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 151 --------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred --------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 123467889999999987663 233444444444
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=127.56 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=101.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+ +. ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~-~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GV-ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CC-CceEEEccC--------CCCcCEEEEc
Confidence 3578999999999999998888775 36999999999999999988765 21 122332222 2279999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
...+. ...++.++.++|||||.++++....+ ..+++.+.+++.||.+++..
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~~--------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILEE--------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcHh--------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 54322 35778999999999999999754321 34678899999999999988
Q ss_pred ecCeEEEEEEecC
Q 018740 336 RNRGFVMFTATKP 348 (351)
Q Consensus 336 ~~g~~~~~~a~kp 348 (351)
..+.|..+.++|+
T Consensus 238 ~~~~W~~~~~~~~ 250 (250)
T PRK00517 238 ERGEWVALVGKKK 250 (250)
T ss_pred EeCCEEEEEEEeC
Confidence 8888888888774
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=124.23 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=103.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh---------CCCCCCCeEEEEecCCCCCC
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~g~~~~~i~~~~~d~~~lp~ 244 (351)
...++++|||+|||.|..+..|++.|. +|+|+|+|+.+++.+.+..... .-....++.+.++|+.+++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 334567999999999999999999987 9999999999999874321100 00013578999999998854
Q ss_pred C-CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 245 A-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
. .+.||.|+...+++|++.. ...++.+.++|+|||++++.+........ .+.-..++.+++.
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~---------------~gPp~~~~~~el~ 176 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL---------------AGPPFSVSDEEVE 176 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC---------------CCCCCCCCHHHHH
Confidence 3 2589999999999999643 48899999999999986665554321100 0112367999999
Q ss_pred HHHHHCCCeEEE
Q 018740 322 DLCRACGLVDFK 333 (351)
Q Consensus 322 ~ll~~aGf~~v~ 333 (351)
+++.. +|.+..
T Consensus 177 ~~~~~-~~~i~~ 187 (218)
T PRK13255 177 ALYAG-CFEIEL 187 (218)
T ss_pred HHhcC-CceEEE
Confidence 99964 254443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=118.88 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~ 245 (351)
.....+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++... +. ..++.++.+|+.+. +..
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g~-~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-GV-LNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-CC-CCCeEEEEechhhhHhhc
Confidence 3445667778899999999999999988765 44568999999999999999988776 21 36789999998763 333
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.||.|++.. ...++..+++++.++|+|||++++...
T Consensus 109 ~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 46899999854 245778899999999999999987544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=116.44 Aligned_cols=132 Identities=20% Similarity=0.350 Sum_probs=108.2
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
..+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+..+... +. ...|+|.+.|+.+..+..++||+|+--+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-~~-~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-GF-SNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-CC-CcceeEEEeeccCCcccccceeEEeecCc
Confidence 34999999999999999999987777999999999999998877665 32 23399999999988888899999997776
Q ss_pred cccCC---C-----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCC
Q 018740 258 IHCWS---S-----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 258 l~h~~---d-----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 329 (351)
+..+. | +...+..+.++|+|||+++|+.- .|+.+++.+.++..||
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec---------------------------CccHHHHHHHHhcCCe
Confidence 65442 2 23567889999999999999643 3588999999999999
Q ss_pred eEEEEEecC
Q 018740 330 VDFKCTRNR 338 (351)
Q Consensus 330 ~~v~~~~~g 338 (351)
+....++..
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988866544
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=125.26 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++... ..++.++.+|+... +++++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence 34557899999999999999998875 358999999999999999988765 34688899998663 4567899999
Q ss_pred eccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh---hcc
Q 018740 254 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---QIS 309 (351)
Q Consensus 254 ~~~vl~h~~d---------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 309 (351)
++--...-.. ...+++++.++|||||.+++....... .......+...-. ...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEE
Confidence 9743221111 245788999999999999986554321 1122222221100 111
Q ss_pred CCccCCCHHH--HHHHHHHCCCeEEEEEecCeEEEEEEecC
Q 018740 310 GSYTFLSERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 310 ~~~~~~s~~~--l~~ll~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
.+...|.... ...++++.||... -.+....+++.|+||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 184 SQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred eeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 1222344432 4478899999855 334455677788887
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=126.26 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=123.0
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
+-+|..|..+.++|.. +...+-.++||+|||||.....+...-. +++|+|+|.+|++.|.++ ..--.+.
T Consensus 105 kL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~ 173 (287)
T COG4976 105 KLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLY 173 (287)
T ss_pred HhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHH
Confidence 3455555555555544 3444467999999999999999988866 899999999999999886 2222345
Q ss_pred EecCCCC-C-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 236 RADISRL-P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 236 ~~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
++++..+ + ..+..||+|++..|+-++.+.+.++..+...|+|||.+.++.-...++.... +. +....
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~--l~---------ps~Ry 242 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV--LG---------PSQRY 242 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCee--cc---------hhhhh
Confidence 5555432 2 3467899999999999999999999999999999999999887665432110 00 00112
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEecC---------eEEEEEEecC
Q 018740 314 FLSEREIEDLCRACGLVDFKCTRNR---------GFVMFTATKP 348 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~~~~g---------~~~~~~a~kp 348 (351)
--++..++.+++..||.++.+.... .-..|+++||
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 2367789999999999998854321 2356677776
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=130.08 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCCeEEEEcCccCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHhhh---CCC-----------------
Q 018740 177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQE---SNF----------------- 227 (351)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~---~g~----------------- 227 (351)
++.+|||+|||+|. ++..+++.++ ..+|+|+|+|+.|++.|++.+-.. ++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999997 3444555432 458999999999999999853100 000
Q ss_pred ----CCCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEe
Q 018740 228 ----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 228 ----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~ 285 (351)
...++.|.+.|+.+.+++.++||+|+|.++++|++++ ..++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0137899999999988778899999999999999755 479999999999999999843
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-14 Score=122.74 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=91.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++... +. ..++.++.+|+.+...
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-~~-~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-GY-WGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CC-CCcEEEEECCcccCCc
Confidence 4566677777778899999999999998888763 2458999999999999999988765 21 2368999999977544
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++..+++|++ .++.++|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 567899999999988775 46889999999998753
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=123.86 Aligned_cols=154 Identities=19% Similarity=0.314 Sum_probs=115.1
Q ss_pred CCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec
Q 018740 159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (351)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d 238 (351)
++...-.++.+..++. ++.+|||+|||+|.++.+.++.|. .+++|+|++|.+++.+++++..+ +. ...+.....+
T Consensus 146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N-~v-~~~~~~~~~~ 220 (300)
T COG2264 146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN-GV-ELLVQAKGFL 220 (300)
T ss_pred ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc-CC-chhhhccccc
Confidence 3444445666666665 588999999999999999999985 57999999999999999998887 22 1112222223
Q ss_pred CCCCCCCCCceeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 239 ISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 239 ~~~lp~~~~~fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
....+ ..++||+|+++-. .++ ..+...+.+.|||||+++++....+ -.
T Consensus 221 ~~~~~-~~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~ 269 (300)
T COG2264 221 LLEVP-ENGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED--------------------------QA 269 (300)
T ss_pred chhhc-ccCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------------HH
Confidence 32222 2368999998753 334 3778899999999999999764321 14
Q ss_pred HHHHHHHHHCCCeEEEEEecCeEEEEEEecC
Q 018740 318 REIEDLCRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
+.+.+.++++||.++++...+.|..+.++|+
T Consensus 270 ~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 270 ESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred HHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 5788999999999999888888888888774
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=120.98 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=91.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
....+...+...++.+|||||||+|.++..+++. ++..+|+++|+++.+++.+++++... | ..++.++.+|.....
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~-g--~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL-G--YDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCeEEEECCcccCC
Confidence 3456667777778899999999999999888876 33469999999999999999998876 2 468999999997765
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+.+.||+|++....++++ +.+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 5678899999988776653 4567789999998884
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-13 Score=121.22 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=104.8
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+...+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++... + ..++.++.+|+.+ ++
T Consensus 76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-G--LDNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhc-cC
Confidence 34444544442 346899999999999999999877779999999999999999988765 2 3479999999876 45
Q ss_pred CCCceeeEEecccc------ccCC------C--------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 245 ASSSIDAVHAGAAI------HCWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 245 ~~~~fD~V~~~~vl------~h~~------d--------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
++++||+|+++-.. +++. + ...+++++.++|+|||.+++...
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------ 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------ 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence 57899999985322 1111 0 13568899999999999988431
Q ss_pred HHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 299 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+...+++.++++++||..++..
T Consensus 219 ---------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 ---------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ---------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678999999999887754
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=121.38 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~fD~V~~ 254 (351)
..+|||||||+|.++..+++..+...++|+|+++.+++.|++++... + ..++.++++|+.+++ ++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-~--l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-G--LKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh-C--CCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45999999999999999999988889999999999999999988765 2 358999999997653 45668999998
Q ss_pred ccccccCCC--------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 255 GAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 255 ~~vl~h~~d--------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+....+... ...+++++.++|||||.+++.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 754332221 1478999999999999999987553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=129.27 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=94.4
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~ 245 (351)
.+...+....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++... | ..++.++++|+..+ .++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~-g--L~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL-N--LKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHhhhhCC
Confidence 344444555567999999999999999999998889999999999999999988776 2 47899999998654 467
Q ss_pred CCceeeEEeccccccCCCh------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++++|.|+++...-|...+ ..++++++|+|+|||.+.+.|-..
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 8999999975332221111 588999999999999999977653
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=108.98 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=112.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
........|.+.++.+++|||||+|..+..++..+|..+|+++|-++++++..+++.... +.+|+.++.+++.+.-.
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhc
Confidence 345567888999999999999999999999998899999999999999999999998887 37999999999966421
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
...++|.|+.... .+.+.+|+.+...|+|||++++.....+ +.....+.+
T Consensus 99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~~~ 148 (187)
T COG2242 99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALEAL 148 (187)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHHHH
Confidence 2237999999887 3567889999999999999999655432 334567788
Q ss_pred HHCCC-eEEE
Q 018740 325 RACGL-VDFK 333 (351)
Q Consensus 325 ~~aGf-~~v~ 333 (351)
++.|+ +++.
T Consensus 149 ~~~g~~ei~~ 158 (187)
T COG2242 149 EQLGGREIVQ 158 (187)
T ss_pred HHcCCceEEE
Confidence 88999 5555
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.8e-13 Score=123.03 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=92.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.+++.++++++.+ .....++..|+... ..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--IK 259 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--cC
Confidence 4556656555566899999999999999999988789999999999999999988876 33456777777542 25
Q ss_pred CceeeEEeccccccCC-----ChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~-----d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++||+|+++-.+|+.. ....+++++.+.|+|||.+++...
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 7899999998887643 246889999999999999998654
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=118.00 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.|.+...+.+.. ..|+.++..|+... +...++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 34567889999999999999999987 3456899999999766555444332 26889999998542 223457
Q ss_pred eeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+|++... .+|. ..++.++.+.|||||.+++...... .....+ ....|+ +++ ++|+++
T Consensus 203 vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~~--------------pe~~f~-~ev-~~L~~~ 262 (293)
T PTZ00146 203 VDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTAK--------------PEVVFA-SEV-QKLKKE 262 (293)
T ss_pred CCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCCC--------------HHHHHH-HHH-HHHHHc
Confidence 999998764 2444 4566799999999999999432211 100000 011123 344 889999
Q ss_pred CCeEEEEEecC
Q 018740 328 GLVDFKCTRNR 338 (351)
Q Consensus 328 Gf~~v~~~~~g 338 (351)
||+.++.+...
T Consensus 263 GF~~~e~v~L~ 273 (293)
T PTZ00146 263 GLKPKEQLTLE 273 (293)
T ss_pred CCceEEEEecC
Confidence 99988866554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-13 Score=124.90 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++.+......+++++..|.... ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 45677777665567999999999999999999988889999999999999999998766100124788888887542 23
Q ss_pred CCceeeEEeccccccC---CC--hHHHHHHHHhcccCCcEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCW---SS--PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~---~d--~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.++||+|+|+-.+|.. .+ ..++++++.++|+|||.++++.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4689999998666543 22 2478999999999999999975
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=121.91 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=110.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCCCceeeE
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV 252 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~~fD~V 252 (351)
.+|||||||.|.....+.+..++ ..+++.|.|+.+++..+++.... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999999888765 78999999999999999875544 3556666666643 24667899999
Q ss_pred EeccccccCC-C-hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH--HH-HHHHhhccC-CccCCCHHHHHHHHHH
Q 018740 253 HAGAAIHCWS-S-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR--LL-RQNMMQISG-SYTFLSEREIEDLCRA 326 (351)
Q Consensus 253 ~~~~vl~h~~-d-~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-~~~~~s~~~l~~ll~~ 326 (351)
++.++|--++ + ...++.+++++|||||.+++-++...+.. ...+-. .+ ...+-...+ ...+|+.+++.+++..
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-qlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-QLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-HHhccCCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 9999998774 2 34889999999999999999988753221 000000 00 001111222 3468999999999999
Q ss_pred CCCeEEE
Q 018740 327 CGLVDFK 333 (351)
Q Consensus 327 aGf~~v~ 333 (351)
+||..++
T Consensus 228 agf~~~~ 234 (264)
T KOG2361|consen 228 AGFEEVQ 234 (264)
T ss_pred cccchhc
Confidence 9998766
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=115.46 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=92.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.+++++..+ + ..++.++..|+.+.. ++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-~--~~~v~~~~~d~~~~~-~~ 96 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-G--LENVEVVQSDLFEAL-PD 96 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-T--CTTEEEEESSTTTTC-CT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-C--ccccccccccccccc-cc
Confidence 4455555444677999999999999999999998777999999999999999999887 2 334999999986633 37
Q ss_pred CceeeEEeccccccCCC-----hHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d-----~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++||+|+++--++.-.+ ...++++..+.|+|||.+++...
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 89999999877655443 35889999999999999987554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=119.30 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=90.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++... | ..++.++.+|+.....
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~-g--~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL-G--LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC-C--CCCeEEEECCcccCCc
Confidence 45666677777889999999999999999988753 356999999999999999998876 2 4689999999977544
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++.....++ .+.+.+.|+|||++++..
T Consensus 143 ~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 45789999988776655 356788999999998853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=123.88 Aligned_cols=145 Identities=22% Similarity=0.339 Sum_probs=107.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.++.+..+.. ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..+ |. ..++.+. ...+.
T Consensus 151 cl~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~-~~~~~v~--~~~~~-- 221 (295)
T PF06325_consen 151 CLELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GV-EDRIEVS--LSEDL-- 221 (295)
T ss_dssp HHHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T--TTCEEES--CTSCT--
T ss_pred HHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CC-CeeEEEE--Eeccc--
Confidence 3555655544 467999999999999999999985 58999999999999999999887 33 2344432 22232
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
..++||+|+++-..+- ...++..+.++|+|||.++++....+ ..+.+.+.+
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~ 272 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAY 272 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHH
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHH
Confidence 3588999998755332 24667788999999999999766431 346788888
Q ss_pred HHCCCeEEEEEecCeEEEEEEecC
Q 018740 325 RACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 325 ~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
++ ||..++....+.|..+.++|+
T Consensus 273 ~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 273 KQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp HT-TEEEEEEEEETTEEEEEEEE-
T ss_pred HC-CCEEEEEEEECCEEEEEEEeC
Confidence 77 999999888888888888774
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-13 Score=114.20 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~ 244 (351)
...+...+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++.. + ..+++++.+|+.+ ++.
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-~--~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-G--VKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCCeEEEECchHHHHhh
Confidence 34567777777788999999999999999987766679999999999999999988765 2 3579999999854 222
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
....+|.++... ..+...+++++.++|+|||.+++..+.
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 223467765432 235578999999999999999998764
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-13 Score=123.63 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=94.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+...+.......++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.++... | ..++.+..+|+.++|
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~-g--~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY-G--IEDFFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh-C--CCCCeEEecchhcCC
Confidence 3444555555666788999999999999988877665 9999999999999999998876 2 345889999999999
Q ss_pred CCCCceeeEEecccc------c-c-CCC-hHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAI------H-C-WSS-PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl------~-h-~~d-~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.+++||+|+++--. . + ..+ ...+++++.++|+|||++++..+.
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 888899999996321 1 1 111 368899999999999999987654
|
This family is found exclusively in the Archaea. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=116.26 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 246 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~~ 246 (351)
.++.+|||+|||+|.++..+++.. +...|+|+|+++ |. ..+++.++++|+.+.+ +.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 457899999999999999998874 446899999988 20 1357899999998853 567
Q ss_pred CceeeEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 247 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~-----------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++||+|++..+.++..++ ..+|+++.++|+|||.+++..+..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 899999998777665443 357999999999999999976653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=121.39 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=109.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+. ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ..++.++++|+.+..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccc
Confidence 33444444443 356999999999999999998777779999999999999999998776 458999999986543
Q ss_pred C-CCCceeeEEeccccc-----cC----------------CC----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchH
Q 018740 244 F-ASSSIDAVHAGAAIH-----CW----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297 (351)
Q Consensus 244 ~-~~~~fD~V~~~~vl~-----h~----------------~d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~ 297 (351)
+ ..++||+|+++--.- +. .| ...+++++.+.|+|||.+++....
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------- 383 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------- 383 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------
Confidence 2 245799999964210 00 01 125566777899999998874321
Q ss_pred HHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEecCC
Q 018740 298 SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKPS 349 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~kp~ 349 (351)
-..+.+.+++++.||..++.. ..|.-.++.++++.
T Consensus 384 -----------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 -----------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -----------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 134678899999999876643 34555666666543
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=120.44 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=94.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+ +. ..++.+...+... ..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n-~~-~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN-QV-SDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc-CC-CcceEEEeccccc--ccCCCceEEEEec
Confidence 46899999999999998888776 358999999999999999988765 22 2345666665332 3367899999976
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
..++ ...++.++.++|+|||.++++....+ ..+++.+.+++. |..++...
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~--------------------------~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGILET--------------------------QAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh--------------------------HHHHHHHHHHcc-CceeeEec
Confidence 5443 35789999999999999998754321 235677777766 87776554
Q ss_pred cC
Q 018740 337 NR 338 (351)
Q Consensus 337 ~g 338 (351)
.+
T Consensus 284 ~~ 285 (288)
T TIGR00406 284 RE 285 (288)
T ss_pred cC
Confidence 44
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=117.86 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec---
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG--- 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~--- 255 (351)
.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+ +++.++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~-~~-~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN-QL-EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 6899999999999999999887779999999999999999998765 22 2359999999865 3344589999986
Q ss_pred ----------cccccCC------------ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 256 ----------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 256 ----------~vl~h~~------------d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
.++.|-| ....+++++.+.|+|||++++....
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-------------------------- 246 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-------------------------- 246 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc--------------------------
Confidence 2333322 2346788999999999999885432
Q ss_pred CCCHHHHHHHHH-HCCCeEEEEE--ecCeEEEEEEec
Q 018740 314 FLSEREIEDLCR-ACGLVDFKCT--RNRGFVMFTATK 347 (351)
Q Consensus 314 ~~s~~~l~~ll~-~aGf~~v~~~--~~g~~~~~~a~k 347 (351)
...+.+.+++. ..||..++.. ..|.-.++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 12346667777 4688766543 234445555544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=116.32 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=100.5
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+. +++++||+
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~-~~~i~~~~~D~~~~-~~~~~fD~ 192 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GL-EDRVTLIQSDLFAA-LPGRKYDL 192 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECchhhc-cCCCCccE
Confidence 33333456999999999999999999887789999999999999999998776 22 25799999998542 34568999
Q ss_pred EEecc------ccccC-----CCh--------------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh
Q 018740 252 VHAGA------AIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 306 (351)
Q Consensus 252 V~~~~------vl~h~-----~d~--------------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (351)
|+++- .+.++ .+| ..+++++.+.|+|||++++....
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~------------------- 253 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN------------------- 253 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------------
Confidence 99861 11111 112 46688899999999999985431
Q ss_pred hccCCccCCCHHHHHHHHHHCCCeEEEEEecCe
Q 018740 307 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 339 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~ 339 (351)
+.+.+.+++...||.-......+.
T Consensus 254 ---------~~~~v~~~~~~~~~~~~~~~~~~~ 277 (284)
T TIGR03533 254 ---------SMEALEEAYPDVPFTWLEFENGGD 277 (284)
T ss_pred ---------CHHHHHHHHHhCCCceeeecCCCc
Confidence 334677788888887655444443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=116.80 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=107.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.......+..+|||||+|+|.++..+++++|..+++.+|. |..++.+++ .++++++.+|+. -+++.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc
Confidence 3445555666677999999999999999999999999999998 889988887 379999999997 45555
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCC--cEEEEEeeccCCCCCcchHH---HHHHHHHhhccCCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS---RLLRQNMMQISGSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~Lkpg--G~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~ 319 (351)
+|+|++.++||+++|.. .+|+++++.|+|| |+|++.++..+......... ....-.+.... ....+|.++
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e 235 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEE 235 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHH
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHH
Confidence 99999999999998775 8899999999999 99999998875443222221 01111111111 245668999
Q ss_pred HHHHHH
Q 018740 320 IEDLCR 325 (351)
Q Consensus 320 l~~ll~ 325 (351)
++++|+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-12 Score=115.34 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+...+...++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++... ...++.++.+|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP 170 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc
Confidence 33444555444555677999999999999999999887779999999999999999987721 146899999998553
Q ss_pred CCCCCceeeEEecccc------c--------cC------------CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 243 PFASSSIDAVHAGAAI------H--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
+.+++||+|+++--. + |- .....+++++.++|+|||.+++...
T Consensus 171 -~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---------- 239 (275)
T PRK09328 171 -LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---------- 239 (275)
T ss_pred -CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------
Confidence 235789999985221 1 11 1124678888899999999998431
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe--cCeEEEEEEe
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR--NRGFVMFTAT 346 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~--~g~~~~~~a~ 346 (351)
+...+.+.+++++.||..++... .|.-.++.++
T Consensus 240 -----------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 -----------------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----------------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01234688899999998766432 2333444443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=114.80 Aligned_cols=111 Identities=28% Similarity=0.345 Sum_probs=87.8
Q ss_pred HHHHhccCCC--CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCC
Q 018740 167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP 243 (351)
Q Consensus 167 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp 243 (351)
++..+.+... ...-|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.++- -.-.++.+|+ +.+|
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLP 107 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCC
Confidence 3444444333 467899999999999999999987 8999999999999999731 1134777887 5589
Q ss_pred CCCCceeeEEeccccccCC-------ChH----HHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWS-------SPS----TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|+.++||.+++..+++++- +|. .++..++.+|++|+..++..+-
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 9999999999988887663 232 6788899999999999987653
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=115.03 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~ 236 (351)
+.|..|...+..+. +.....++|||+|||+|.++..++++.+..+|+|+|+++.|++.++++ .+++.+++
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEE
Confidence 44566666653332 223345799999999999998888775446999999999999999885 35788999
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCC--------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
+|+..+.. +.+||+|+++-.+.|... ...+++.+..+|+|+|.+++..... +
T Consensus 116 ~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~-------~ 187 (279)
T PHA03411 116 SDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR-------P 187 (279)
T ss_pred Cchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------c
Confidence 99988653 468999999888877532 1356677788999999776652211 1
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
+ + | .-.+.++++++|+++||..
T Consensus 188 ~-------y-----~-~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 188 Y-------Y-----D-GTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred c-------c-----c-ccCCHHHHHHHHHhcCcEe
Confidence 1 0 1 2358899999999999974
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=111.87 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=92.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-------C--CCCCCCeEEEEecCCCCC
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------S--NFPKENFLLVRADISRLP 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~--g~~~~~i~~~~~d~~~lp 243 (351)
+...++.+||+.|||.|.....|++.|. +|+|+|+|+.+++.+.+..... . -....+++++++|+.+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3344568999999999999999999998 8999999999999986632100 0 011458999999999986
Q ss_pred CC---CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.. .+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...+
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 42 2689999999999999643 4889999999999999999887543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=106.03 Aligned_cols=107 Identities=22% Similarity=0.363 Sum_probs=87.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 255 (351)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++... +. ..+++++++|+.+.. +++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-GL-DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-TT-TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-cC-CceEEEEECchhhchhhccCceeEEEEEC
Confidence 4589999999999999999998 569999999999999999988875 21 467999999998765 678999999998
Q ss_pred cccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
--..... .-..+++++.++|+|||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6654321 1247899999999999999998763
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=112.88 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=89.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+...+...++.+|||+|||+|.++..+++... +++++|+++.+++.+++++... + ..++++..+|......
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQL-G--LHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHC-C--CCceEEEECCcccCCC
Confidence 345666677777889999999999999988887764 8999999999999999998775 2 4579999999865322
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..++||+|++...++++ .+++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 35789999998877665 3567889999999998655
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-12 Score=106.73 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=124.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-EEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i-~~~~~d~~~l 242 (351)
.+.+.+.+++... +.+|||||||||.....+++..|.....-.|+++......+..+.+. + .+|+ .-+..|+...
T Consensus 13 pIl~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-~--~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-G--LPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc-C--CcccCCCeEeecCCC
Confidence 3456777777653 22699999999999999999999888888999998877766665554 2 2222 1234555544
Q ss_pred CC--------CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 243 PF--------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 243 p~--------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
+. ..++||+|++.+++|-.+-. ..+++.+.++|++||.|++..|...+-....+--..+...+......+
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 22 24589999999999987643 588999999999999999988865433333333444555555555577
Q ss_pred cCCCHHHHHHHHHHCCCeEEEEEec
Q 018740 313 TFLSEREIEDLCRACGLVDFKCTRN 337 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~~~~~ 337 (351)
-..+.+++.++.+++|+..++.+..
T Consensus 169 GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 169 GIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred CccCHHHHHHHHHHCCCccCccccc
Confidence 8889999999999999998775543
|
The function of this family is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=114.79 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=97.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
..+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+. +++++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l-~~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GL-EDRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CC-CCcEEEEECchhhh-CCCCCccEEEECCC
Confidence 36899999999999999999887789999999999999999998876 22 24699999998542 2356899999861
Q ss_pred -----c-------cccCCC------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 257 -----A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 257 -----v-------l~h~~d------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
. ++|-+. ...+++++.+.|+|||.+++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------- 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------- 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------------------
Confidence 1 122221 146789999999999999985321
Q ss_pred cCCCHHHHHHHHHHCCCeEEEEEecCeE
Q 018740 313 TFLSEREIEDLCRACGLVDFKCTRNRGF 340 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~~~~~g~~ 340 (351)
+...+.+++...||.-......+..
T Consensus 266 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (307)
T PRK11805 266 ---SRVHLEEAYPDVPFTWLEFENGGDG 290 (307)
T ss_pred ---CHHHHHHHHhhCCCEEEEecCCCce
Confidence 2235667777778766555444443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=108.21 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=100.4
Q ss_pred hhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCC-CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Q 018740 144 FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (351)
Q Consensus 144 ~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 222 (351)
..|+.++|++.... |..-.+.+.+++...+ ...|.|+|||.+.++..+.+. . .|+..|+-.
T Consensus 42 ~~YH~Gfr~Qv~~W----P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva----------- 103 (219)
T PF05148_consen 42 DIYHEGFRQQVKKW----PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHCTS----SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHhcC----CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-----------
Confidence 45667777765332 2223455666665444 468999999999999776533 2 799999854
Q ss_pred hhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHH
Q 018740 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR 302 (351)
Q Consensus 223 ~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 302 (351)
.+-.+..+|+.++|+++++.|+++++-.|.- .|...+++|+.|+|||||.|.|.+...
T Consensus 104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S-------------- 161 (219)
T PF05148_consen 104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS-------------- 161 (219)
T ss_dssp -------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------
T ss_pred -------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc--------------
Confidence 2223678999999999999999999988875 478899999999999999999977642
Q ss_pred HHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE-ecCeEEEEEEecCC
Q 018740 303 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 349 (351)
Q Consensus 303 ~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~-~~g~~~~~~a~kp~ 349 (351)
++-+.+.+.+.++..||...... .+..++++..+|..
T Consensus 162 ----------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 162 ----------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp ----------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred ----------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 23367889999999999988843 55667777777654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-12 Score=109.74 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=105.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---------CCCCCCeEEEEe
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRA 237 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------g~~~~~i~~~~~ 237 (351)
......+...++.+||..|||.|.....|++.|. +|+|+|+|+.+++.+.+...... .....+|+++++
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3333335566678999999999999999999987 99999999999999854322100 011347899999
Q ss_pred cCCCCCCCC-CceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 238 DISRLPFAS-SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 238 d~~~lp~~~-~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
|+..++... ++||+|+-...|.-++ ...+..+.+.++|+|||.+++.+...+... ..+.-..
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------------~~GPPf~ 169 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------------MEGPPFS 169 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---------------SSSSS--
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---------------CCCcCCC
Confidence 999987544 5899999988887775 335889999999999999666665432111 0112223
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 018740 315 LSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~ 334 (351)
.+.+++.+++. .+|++...
T Consensus 170 v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEE
Confidence 58899999998 78877653
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=110.63 Aligned_cols=119 Identities=23% Similarity=0.178 Sum_probs=83.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
...+..+...-.. ...++|+|||+|..++.++..+. +|+|+|+|+.|++.|++...... ......+...++.+|
T Consensus 21 tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 21 TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDL 94 (261)
T ss_pred HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccc
Confidence 3334444444332 23899999999988888888876 99999999999999988532220 011122222233333
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCc-EEEEEeecc
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV 288 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG-~li~~~~~~ 288 (351)
--.+++.|+|++...+|++ |...+.++++|+||++| .+.+..++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 3348999999999999987 78889999999999876 666665553
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-12 Score=115.23 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=84.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCC----cee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID 250 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~----~fD 250 (351)
++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.|++.+++++... ....++.++++|+.+ ++++.. ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence 467899999999999999998864 358999999999999999987764 113457778999976 343332 234
Q ss_pred eEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++++...+++++. ...+|++++++|+|||.+++.....
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 5555567888863 3478999999999999999865443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-11 Score=105.55 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=127.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-EEEEecCCCC---CCCCCc
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRL---PFASSS 248 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i-~~~~~d~~~l---p~~~~~ 248 (351)
...+-+||||.||.|+.........+. .++...|.|+..++..++.+++. | ..++ .|.++|+.+. .--+..
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-g--L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-G--LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-C--CccceEEEecCCCCHhHhhccCCC
Confidence 345679999999999998888887664 68999999999999999998887 3 3444 9999998763 222446
Q ss_pred eeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhcc----CCccCCCHHHHH
Q 018740 249 IDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS----GSYTFLSEREIE 321 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~l~ 321 (351)
.++++.++.++.++|-. ..|+.+.+.+.|||+++.+.. ++.|.++.+...+..+. ...+..|..++.
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHHHHHhcccCCCceEEEecCHHHHH
Confidence 79999999999999854 679999999999999998653 33444554544444422 123567999999
Q ss_pred HHHHHCCCeEEE--EEecCeEEEEEEec
Q 018740 322 DLCRACGLVDFK--CTRNRGFVMFTATK 347 (351)
Q Consensus 322 ~ll~~aGf~~v~--~~~~g~~~~~~a~k 347 (351)
++.+.+||+.++ +...|.|.+-.|+|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999998777 45678888877765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-11 Score=106.57 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.-.+.+++.+....+.+|||+|||.|.++..+++..|..+++-+|+|..+++.+++++..+ + ..+..++..|...-
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-~--~~~~~v~~s~~~~~- 220 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-G--VENTEVWASNLYEP- 220 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-C--CCccEEEEeccccc-
Confidence 3356788888877777999999999999999999999999999999999999999999887 1 34435666666443
Q ss_pred CCCCceeeEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+ +||+|+|+=-+|-=.+. .+++++..+.|++||.|.++..
T Consensus 221 v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 233 89999999887743322 3789999999999999998765
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=105.33 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=94.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..+...+.|++++... +..|+.+.++|...--.
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL---GYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCcccCCC
Confidence 356778888999999999999999999999999876 9999999999999999999887 35679999999866433
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.++||.|+.......+|++ +.+.|+|||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 46889999999988877544 5678999999998544
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=117.28 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=92.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
...+...+.+.++.+|||+|||+|..+..+++.++..+|+++|+++.+++.+++++... ..++.++++|+.+++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQW 308 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhh
Confidence 34455667777889999999999999999998875569999999999999999998876 345789999998764
Q ss_pred CCCCceeeEEecc------ccccCC------Ch----------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGA------AIHCWS------SP----------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+..++||.|++.- ++.+-+ .+ ..+|+++.++|||||.+++++...
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2357899999432 222111 11 368999999999999999988643
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=107.44 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=107.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~ 245 (351)
.+..+......++|||+|||+|..+..++++.+..+++|||+.+.+.+.|+++++.+ ....+++++++|+.++. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhccc
Confidence 455666666688999999999999999999976789999999999999999998875 22689999999998764 33
Q ss_pred CCceeeEEeccccc----------------cC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh
Q 018740 246 SSSIDAVHAGAAIH----------------CW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ 307 (351)
Q Consensus 246 ~~~fD~V~~~~vl~----------------h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (351)
..+||+|+|+=-.. |. .+.+..++...++|||||.+.+.-+..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e------------------- 173 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE------------------- 173 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------
Confidence 45799999983321 11 134688899999999999998864321
Q ss_pred ccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 308 ISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 308 ~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
...++.+++++.+|...+
T Consensus 174 --------rl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 174 --------RLAEIIELLKSYNLEPKR 191 (248)
T ss_pred --------HHHHHHHHHHhcCCCceE
Confidence 235788899998997766
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=109.62 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=87.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
....+.+.+...++.+|||||||+|+++..++.. ++...|+++|+.+..++.|++++... ...++.++.+|....-
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhcc
Confidence 3456778888889999999999999999999887 54557999999999999999999887 2468999999986543
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...++||.|++......++ ..+.+.|++||++++-.-
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 3457899999998877543 236678999999998443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=105.45 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=99.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+...++..++.+|||.|.|+|.++..|+.. ++.++|+.+|+.++..+.|++++... |. .+++.+..+|+.+.-.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l-~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GL-GDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-cc-ccceEEEecccccccc
Confidence 457788889999999999999999999999964 67789999999999999999999986 33 3459999999987655
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ .||+|+. .+++|..+++.+.++|+|||.+++..|+.
T Consensus 161 ~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 161 EE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 44 8999984 57899999999999999999999977653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=104.38 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=120.5
Q ss_pred ccccCccchhhhcCC-hhhhhhhhhhhhhhhcCCCCCcHHHHHHHHhccCCC-CCCeEEEEcCccCHHHHHHHHhCCCCe
Q 018740 126 YGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSL 203 (351)
Q Consensus 126 y~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~ 203 (351)
|......+..+|..+ ..-..|+.+++.+....-... ++.+...+... ....|.|+|||.+.++. .... .
T Consensus 131 Yt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nP----ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~--k 201 (325)
T KOG3045|consen 131 YTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENP----LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERH--K 201 (325)
T ss_pred ccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCh----HHHHHHHHHhCcCceEEEecccchhhhhh---cccc--c
Confidence 333333334455443 333457778887764433322 33444444333 34589999999998775 2223 8
Q ss_pred EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 204 v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
|+.+|+-+ .+-.++.+|+.++|+++++.|+++++..|.- .|...++.|+.|+|++||.++|
T Consensus 202 V~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 202 VHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred eeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEE
Confidence 99999843 4556789999999999999999998888764 5888999999999999999999
Q ss_pred EeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE-EecCeEEEEEEecCC
Q 018740 284 TTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS 349 (351)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~-~~~g~~~~~~a~kp~ 349 (351)
.... .++-+...+...+...||.+... ..+..+++|...|+.
T Consensus 263 AEv~------------------------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 263 AEVK------------------------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred Eehh------------------------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 6543 13456778999999999998774 345566777766643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-11 Score=106.07 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=96.8
Q ss_pred HHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C
Q 018740 166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (351)
Q Consensus 166 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (351)
.+.+...+.. ....+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... +++++++|+.+. +
T Consensus 74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~ 147 (251)
T TIGR03704 74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcc
Confidence 3444444432 2245899999999999999998766669999999999999999998765 247889998653 2
Q ss_pred C-CCCceeeEEecccc------c--------cCC--------C----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 244 F-ASSSIDAVHAGAAI------H--------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 244 ~-~~~~fD~V~~~~vl------~--------h~~--------d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
. ..++||+|+++--. . |-+ | ...+++.+.++|+|||++++.....
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-------- 219 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-------- 219 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--------
Confidence 1 13579999987321 1 110 1 2367778889999999999864321
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
...++..++++.||......
T Consensus 220 -------------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -------------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -------------------hHHHHHHHHHHCCCCceeeE
Confidence 23468888899999655433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=93.42 Aligned_cols=101 Identities=27% Similarity=0.406 Sum_probs=84.8
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-CCCceeeEEecccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 258 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl 258 (351)
+|+|+|||.|.++..+.+ ....+++++|+++.+++.+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 33569999999999999998533222 25678999999987653 46789999999999
Q ss_pred cc-CCChHHHHHHHHhcccCCcEEEEE
Q 018740 259 HC-WSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 259 ~h-~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++ ..+...+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99 778889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=113.42 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=88.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|++++... | ..++.++.+|+...+.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-g--~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-G--IENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCChhhccc
Confidence 34555666666788999999999999999988753 247999999999999999988765 2 4679999999877655
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++...+++++ ..+.+.|+|||.+++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 557899999987766542 34678999999988743
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=118.35 Aligned_cols=124 Identities=22% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.....+...+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.+++.++++++.. |.. ..+.+..+|....+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~~-~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GLT-IKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CCC-eEEEEecccccccc
Confidence 3345566677888889999999999999999988755679999999999999999999876 321 23444667766554
Q ss_pred C--CCCceeeEEe------ccccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 F--ASSSIDAVHA------GAAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
. ..++||.|++ .+++++.++ ...+|.++.++|||||.++.++....
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3 4678999995 246666555 35789999999999999999887653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-11 Score=117.05 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
+.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++... +. ..++.++.+|+... ++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l-~~~v~~~~~D~~~~-~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EV-TDRIQIIHSNWFEN-IEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CC-ccceeeeecchhhh-CcCCCccEEEECCC
Confidence 46899999999999999988877779999999999999999998765 22 35789999997542 3356899999852
Q ss_pred -------------ccccCC--------C----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCC
Q 018740 257 -------------AIHCWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 311 (351)
Q Consensus 257 -------------vl~h~~--------d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (351)
+..|-+ | ...+++++.++|+|||.+++...
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig------------------------- 270 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG------------------------- 270 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-------------------------
Confidence 112211 1 12467788899999999987421
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEE
Q 018740 312 YTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 312 ~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+-..+.+.+++++.||..++.
T Consensus 271 --~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 271 --FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred --CchHHHHHHHHHhcCCCceEE
Confidence 113457888888899976653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=117.56 Aligned_cols=123 Identities=22% Similarity=0.250 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+.....+...+.+.++.+|||+|||+|..+..+++.. ..++|+++|+++.+++.+++++... | ..++.++.+|+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-g--~~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-G--LKSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-C--CCeEEEEeCChhh
Confidence 3334455666777788999999999999999988863 3458999999999999999998876 3 3579999999987
Q ss_pred CC----CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LP----FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ...++||.|++. +++.+-++ ...+|.++.++|||||+++.+|...
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 75 446789999963 45555454 3477999999999999999887653
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=105.29 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
..+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+... ...-.++++..++++....++||+|++.++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4689999999999998775443 349999999999999999876553 124467788888887655689999999999
Q ss_pred cccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+-|+.|.+ .+|++....|+|+|++++-+......... .+.....-..+.+.+++++++||+++++..
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~-----------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE-----------FDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE-----------EETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc-----------cCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99998765 99999999999999999988765422100 011112223477899999999999999855
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 201 ~ 201 (218)
T PF05891_consen 201 K 201 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=105.28 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=101.5
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc--
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA-- 257 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v-- 257 (351)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|++++... |. .++.++..|+..-- .++||+|+++=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l--~~~~~~~~dlf~~~--~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GL--VRVLVVQSDLFEPL--RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CC--ccEEEEeeeccccc--CCceeEEEeCCCCC
Confidence 799999999999999999998889999999999999999999887 32 66677777764421 248999998721
Q ss_pred ---cccC-C-----Ch--------------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 258 ---IHCW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 258 ---l~h~-~-----d~--------------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
..+. + +| ..++.++.+.|+|||.+++..- +
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---------------------------~ 240 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---------------------------L 240 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---------------------------C
Confidence 1111 1 22 3677888999999999888432 1
Q ss_pred CCHHHHHHHHHHCC-CeEEEEE--ecCeEEEEEEecC
Q 018740 315 LSEREIEDLCRACG-LVDFKCT--RNRGFVMFTATKP 348 (351)
Q Consensus 315 ~s~~~l~~ll~~aG-f~~v~~~--~~g~~~~~~a~kp 348 (351)
-..+.+.+++++.| |..+... ..|...++.+.+.
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 24578999999999 6655533 3455566665543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=102.71 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=78.6
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
....+....++.+|||+|||+|.++..+++.. +..+++|+|+|+.+ . .+++.++++|+.+.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~----~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P----IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c----CCCceEEEeeCCChhHHH
Confidence 33334445678899999999999999888775 34579999999854 1 356888999987643
Q ss_pred -----CCCCceeeEEecccc--------ccCC---ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -----FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -----~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++.++||+|++.... +|.. +...++.++.++|+|||.+++..+.
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 346789999986432 2211 1357899999999999999986543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=103.33 Aligned_cols=140 Identities=19% Similarity=0.338 Sum_probs=108.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
...+..+...++..||.+|||.|.|+|.++..|++. ++.++|+.+|+.++..+.|++++... |. ..++.+...|+.+
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl-~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GL-DDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TC-CTTEEEEES-GGC
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CC-CCCceeEecceec
Confidence 444567888899999999999999999999999975 77889999999999999999999987 43 5689999999965
Q ss_pred CCCC---CCceeeEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 242 LPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 242 lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~~~L-kpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
-.+. +..+|.|+. .+++|..++..+.++| +|||++.+-.|+.+ + .
T Consensus 104 ~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie----------Q----------------v 152 (247)
T PF08704_consen 104 EGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE----------Q----------------V 152 (247)
T ss_dssp G--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH----------H----------------H
T ss_pred ccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH----------H----------------H
Confidence 4442 367999984 5789999999999999 89999998777632 1 1
Q ss_pred HHHHHHHHHCCCeEEEEE
Q 018740 318 REIEDLCRACGLVDFKCT 335 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~ 335 (351)
....+.|++.||..++.+
T Consensus 153 ~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETV 170 (247)
T ss_dssp HHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEE
Confidence 245667788899887743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=106.32 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=79.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
...++||||.|.|..+..++..+. +|++.|.|+.|....+++ +.+++ +..++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence 356899999999999999999877 899999999997777653 23333 3333332356899999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+|..-.+|..+|+++++.|+|+|++++....
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999999886643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=105.37 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=114.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
...++||||+-|...+.+...+ ..+++-+|.|-.|++.++..- .+........+|-+.++|.++++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-----CCceEEEEEecchhcccccccchhhhhhhhh
Confidence 4589999999999999999987 458999999999999998631 1134466778899999999999999999999
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH-HHHHhhccCCccCCC-HHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQNMMQISGSYTFLS-EREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s-~~~l~~ll~~aGf~~v~~~ 335 (351)
+|++.|...-+.++...|||+|.++.+....+......-.+.-. ........+|..-|+ ..++-.+|.++||....+.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 99999999999999999999999998877765321111000000 001112334544443 4789999999999876543
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 227 t 227 (325)
T KOG2940|consen 227 T 227 (325)
T ss_pred c
Confidence 3
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-11 Score=109.70 Aligned_cols=111 Identities=26% Similarity=0.288 Sum_probs=80.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC------CCCCeEEEEecCCCC------C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF------PKENFLLVRADISRL------P 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~------~~~~i~~~~~d~~~l------p 243 (351)
++.+|||+|||.|.-+.-+.... -..++|+|++...++.|+++..... +. ..-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999988777777765 3599999999999999999983310 00 013467788887532 2
Q ss_pred CCCCceeeEEeccccccCCC-h---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSS-P---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d-~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....||+|-|.++||+.-. . ..+|+++...|+|||+++.+++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22359999999999999743 2 368999999999999999999875
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=97.89 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=83.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...++.+|||+|||+|.++..+++++. +++++|+++.+++.+++++.. ..+++++.+|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence 3455666666778999999999999999999854 999999999999999988643 368999999999998777
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhc--ccCCcEEEEEe
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT 285 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~--LkpgG~li~~~ 285 (351)
..||.|+++--+ |+. ...+.++.+. +.++|.+++..
T Consensus 76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 779999886543 332 2344444432 34778777754
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=105.90 Aligned_cols=116 Identities=19% Similarity=0.137 Sum_probs=90.5
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
...+.+.++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++.. | ..++.++..|...++...+.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~~~~~ 140 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-G--VLNVAVTNFDGRVFGAAVPK 140 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-C--CCcEEEecCCHHHhhhhccC
Confidence 3455677788999999999999998887642 358999999999999999999876 2 35789999998776655567
Q ss_pred eeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||.|++. +++.+-++ ...+|+++.+.|||||+++.++-..
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999963 22322221 1358999999999999999887654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=113.35 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=94.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
...+...+.+.++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++.. | ..++.+..+|...++
T Consensus 226 s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~-g--~~~v~~~~~Da~~l~~ 302 (431)
T PRK14903 226 SQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL-K--LSSIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCeEEEEECchhhhhh
Confidence 3445556677788999999999999998888763 3469999999999999999998876 3 356899999998775
Q ss_pred CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+..++||.|++. +++.+-++ ..++|.++.+.|||||.++.+|-...
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 446789999963 22322221 24678999999999999999887653
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=105.33 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... + ..++++++.+|+.+. +-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~-~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-E-NGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-C-CCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 467899999999999999999888889999999999999999987543 0 147899999998543 2223679999975
Q ss_pred cccc--cCC---ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIH--CWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~--h~~---d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
. ++ ..+ ....+++++.+.|+|||++++..+.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3 21 111 1258899999999999999996543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=111.38 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=91.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.....+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.+++++... | ..++.++.+|+..++ ++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g--~~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-G--ITIIETIEGDARSFS-PE 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-C--CCeEEEEeCcccccc-cC
Confidence 44455666778899999999999988887753 2358999999999999999998876 3 357999999998875 45
Q ss_pred CceeeEEec------cccccCC------C----------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 247 SSIDAVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 247 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
++||+|++. +++.+-+ + ...+|.++.+.|+|||++++++....
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 789999952 2221111 1 23689999999999999999887653
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=99.77 Aligned_cols=101 Identities=22% Similarity=0.369 Sum_probs=82.5
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C--CCCCceeeEEecc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA 256 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~ 256 (351)
.+||||||.|.++..++...|+..++|+|+....+..+.+++... ...|+.++++|+..+ + ++++++|.|+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe-
Confidence 899999999999999999999999999999999999999988876 368999999999873 2 456899999864
Q ss_pred ccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 257 AIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 257 vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+||| ..+|..+.++|+|||.+.+.|-..
T Consensus 96 ----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 96 ----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp ----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred ----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 3454 488999999999999999977553
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=111.84 Aligned_cols=118 Identities=25% Similarity=0.239 Sum_probs=91.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
...+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++... | ..++.++.+|+..++
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~-g--~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL-G--LTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCCcccccc
Confidence 3455556677778899999999999999998863 4569999999999999999998876 3 356999999998763
Q ss_pred -CCCCceeeEEecc------ccccCCC----------------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~------vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++ ++||+|++.. ++.+-++ ...+|+++.++|||||.++.++-.
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 23 6899999742 2222221 135799999999999999987654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=105.51 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--Hhhh--CCCCCCCeEEEEecCCC-CCCCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISR-LPFASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~g~~~~~i~~~~~d~~~-lp~~~~~fD~ 251 (351)
.+.+||+||||+|..+..+.+..+..+|+++|+++.+++.|++. +... .....++++++.+|+.+ ++...+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 35699999999999999998876567999999999999999962 1111 01235899999999876 3444578999
Q ss_pred EEeccccccCCC------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 252 VHAGAAIHCWSS------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 252 V~~~~vl~h~~d------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
|++... ..... -..+++.+++.|+|||++++.... ++... . ....+.+.++
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s--------p~~~~--~------------~~~~i~~tL~ 286 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNS--------PADAP--L------------VYWSIGNTIE 286 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC--------hhhhH--H------------HHHHHHHHHH
Confidence 998632 11100 146899999999999998875322 11000 0 0123678889
Q ss_pred HCCCeEEEEEe-----cCeEEEEEEec
Q 018740 326 ACGLVDFKCTR-----NRGFVMFTATK 347 (351)
Q Consensus 326 ~aGf~~v~~~~-----~g~~~~~~a~k 347 (351)
++|+.+..... .+.|.+..|.|
T Consensus 287 ~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 287 HAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HhCCceEEEEEecCCCCCceEEEEEeC
Confidence 99997765222 23355666654
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=105.50 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC-CCCCeEEEEecCCCC-CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-PKENFLLVRADISRL-PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~-~~~~i~~~~~d~~~l-p~~~~~fD~V~ 253 (351)
.+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+.... +. ..++++++.+|+... +...++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887445689999999999999999876431 11 257899999998653 33467899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+...-.+.+. ...+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8543222221 1577899999999999998753
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=100.19 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=99.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---CCC-------------------------
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---NFP------------------------- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---g~~------------------------- 228 (351)
.+..+|||||..|.++..+++.+....++|+||++..++.|++.+.... +..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999999998766789999999999999998764321 000
Q ss_pred -----------CCCeEEEEecCCCCCCCCCceeeEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 229 -----------KENFLLVRADISRLPFASSSIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 229 -----------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
..|..+...|+. .+....||+|+|..+-.++ .| ...+++++.++|.|||+|++.-...++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks- 214 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS- 214 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH-
Confidence 011112222222 2345689999997764332 22 458999999999999999996554332
Q ss_pred CCcchHHHHHHHHHhh-ccCCccCCCHHHHHHHHHHC--CCeEEE
Q 018740 292 FNLIPFSRLLRQNMMQ-ISGSYTFLSEREIEDLCRAC--GLVDFK 333 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~ll~~a--Gf~~v~ 333 (351)
+....+..... ......++.++.+..++.+. ||+-++
T Consensus 215 -----Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 22222221111 12233567889999999876 665544
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=95.59 Aligned_cols=130 Identities=13% Similarity=0.244 Sum_probs=102.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceeeEEec
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 255 (351)
.++|||||=+..+...- .+ .-.|+.||+++. .+ .+.+.|+.+.|.+ ++.||+|.++
T Consensus 53 lrlLEVGals~~N~~s~--~~-~fdvt~IDLns~----------------~~--~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG-WFDVTRIDLNSQ----------------HP--GILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccc--cC-ceeeEEeecCCC----------------CC--CceeeccccCCCCCCcccceeEEEEE
Confidence 59999999765543332 22 236999999762 22 3578899887764 6799999999
Q ss_pred cccccCCChH---HHHHHHHhcccCCcE-----EEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 256 AAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 256 ~vl~h~~d~~---~~l~~i~~~LkpgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
.||.++|+|. .+++.+.+.|+|+|. |+++.|..- . .+-+|++.+.+..+++..
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------v---~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------V---TNSRYMTEERLREIMESL 172 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH----------------h---hcccccCHHHHHHHHHhC
Confidence 9999999986 889999999999999 888877531 0 155789999999999999
Q ss_pred CCeEEEEEecCeEEEEEEecC
Q 018740 328 GLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 328 Gf~~v~~~~~g~~~~~~a~kp 348 (351)
||..++.........+..+|.
T Consensus 173 Gf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 173 GFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred CcEEEEEEecCeEEEEEEeec
Confidence 999999887777666666654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=103.94 Aligned_cols=112 Identities=26% Similarity=0.399 Sum_probs=88.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCC------CCCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISR------LPFASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~------lp~~~~ 247 (351)
++..++|+|||.|.-+..+-+.+- ..++|+||++..+++|+++.....+.. .-.+.|+.+|... +++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 477899999999988888877763 589999999999999999887642110 1246889998743 355566
Q ss_pred ceeeEEeccccccC-C---ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 248 SIDAVHAGAAIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 248 ~fD~V~~~~vl~h~-~---d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+||+|-|.+++|+- . ....+|+++.+.|+|||++|.+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 69999999999874 3 235789999999999999999998763
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.2e-10 Score=115.56 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=94.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC--------------CCCCeEEEEecCCCCC
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------------PKENFLLVRADISRLP 243 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~--------------~~~~i~~~~~d~~~lp 243 (351)
+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++++..+ +. ...+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN-ALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999887779999999999999999998764 11 1247999999987643
Q ss_pred CC-CCceeeEEecc--------------ccccC--------------------CCh----HHHHHHHHhcccCCcEEEEE
Q 018740 244 FA-SSSIDAVHAGA--------------AIHCW--------------------SSP----STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 244 ~~-~~~fD~V~~~~--------------vl~h~--------------------~d~----~~~l~~i~~~LkpgG~li~~ 284 (351)
.. ...||+|+++= +.+|- .|- .+++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 23699999872 11110 111 46677888899999999885
Q ss_pred eeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH-HHHHHCCCeEEEEE
Q 018740 285 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCT 335 (351)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~-~ll~~aGf~~v~~~ 335 (351)
.-.. -.+.+. +++++.||..++.+
T Consensus 278 iG~~---------------------------q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 278 MGGR---------------------------PGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred ECcc---------------------------HHHHHHHHHHHHCCCCeeEEe
Confidence 4321 223566 57788888776644
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=98.94 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC-CCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g-~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
+.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+....+ ...++++++.+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4599999999999999998876556899999999999999998754311 1246788888887542 2224689999986
Q ss_pred cccccCCC----hHHHHHHHHhcccCCcEEEEE
Q 018740 256 AAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 256 ~vl~h~~d----~~~~l~~i~~~LkpgG~li~~ 284 (351)
.....-+. ...+++.+++.|+|||++++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 54221111 347789999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=100.16 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=108.6
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
...+|+|.|.|+.+..+...+| ++-|++++...+-.+...+. +.|+.+.+|+.+- .| .-|+|++.++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence 6899999999999999999888 79999999877777766532 5588888998654 23 34699999999
Q ss_pred ccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcc----hHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 259 HCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 259 ~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
|||.|.+ ++|++++..|+|||.+++.+...+...... ..................-.+..+++.++.++||.+.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 9999875 999999999999999999888554211111 1111112222222223455689999999999999988
Q ss_pred EEEec
Q 018740 333 KCTRN 337 (351)
Q Consensus 333 ~~~~~ 337 (351)
...-.
T Consensus 327 ~~~~~ 331 (342)
T KOG3178|consen 327 MVALT 331 (342)
T ss_pred EEEec
Confidence 75443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-10 Score=97.05 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=87.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~~~fD~V~~ 254 (351)
...+||||||.|.++..+++..|+..++|||+....+..|.+++.+. + ..|+.+++.|+..+ -+++++.|-|..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~-~--l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL-G--LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc-C--CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 35899999999999999999999999999999999999999998887 2 23999999998664 135669999996
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 255 GAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 255 ~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ||| ..+|+.+.++|+|||.+.+.|-..
T Consensus 126 ~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 126 NF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 54 454 488999999999999999977553
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-10 Score=109.34 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HhhhC--CCCCCCeEEEEecCCCC-CCCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~--g~~~~~i~~~~~d~~~l-p~~~~~fD~ 251 (351)
++++|||||||+|..+..+.+.....+++++|+++++++.++++ +.... ....++++++.+|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999998864336999999999999999983 32210 12247899999998763 333568999
Q ss_pred EEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEe
Q 018740 252 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~ 285 (351)
|++...-...+.+ ..+++.+++.|+|||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9987543322222 357899999999999998864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=95.30 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=82.7
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
.+.|+.|..++..+... ...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++ ..++
T Consensus 30 ~GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~ 99 (241)
T PHA03412 30 LGAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEA 99 (241)
T ss_pred CCccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCC
Confidence 35566777766655422 2236799999999999999988753 245899999999999999975 3568
Q ss_pred EEEEecCCCCCCCCCceeeEEeccccccC--CC----------hHHHHHHHHhcccCCcE
Q 018740 233 LLVRADISRLPFASSSIDAVHAGAAIHCW--SS----------PSTGVAEISRVLRPGGV 280 (351)
Q Consensus 233 ~~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~i~~~LkpgG~ 280 (351)
.++.+|+...++ +++||+|+++=-+.-. .+ ...+++.+.+++++|+.
T Consensus 100 ~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 100 TWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 899999987664 5689999997433211 11 24678888886666654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=97.43 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=87.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
..+.......++++|||+|||+|..+..++.. .+..+++++|+++.+++.|+++++.. |. ..+++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl-~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GV-DHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEccHHHHHHH
Confidence 33444444455779999999999988888775 33579999999999999999999887 44 36899999998653 2
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.++||+|+....= +.....+..+.+.|+|||++++....
T Consensus 136 l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 124689999974321 23357789999999999998875543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=110.91 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..+ |....+++++++|+.+. .-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 367999999999999999998763 47999999999999999999887 43225799999998653 1114689999985
Q ss_pred cc-----------cccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AA-----------IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~v-----------l~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-- .....+...++..+.++|+|||.+++.+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 1112234567888899999999998754
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=104.29 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++... + ..++.++.+|+.+.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN-G--LDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEeChHHh
Confidence 34456666677766778999999999999999998875 9999999999999999998766 2 35799999998642
Q ss_pred ----CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 243 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
++.+++||+|++.---. .....++.+.+ ++|+++++++.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 34456899999742211 12344555555 68999988875
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=103.54 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~V 252 (351)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..+ |....+++++++|+.+.- ...++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 36799999999999988766554 358999999999999999999887 332247999999987641 124689999
Q ss_pred Eecccccc---------CCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h---------~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++.--... ..+-..+++.+.++|+|||.++..+-
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98632110 01123445567899999999987553
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=98.66 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCC-C-CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-P-FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~l-p-~~~~~fD~V~ 253 (351)
.+++||+||||.|..+..+++.....+|+.+|+++.+++.+++.+... .+...++++++.+|+... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 467999999999999999988744468999999999999999987642 122357899999997442 1 2256899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEE
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~ 284 (351)
+...-.+.+. ...+++.+++.|+|||+++..
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8543322221 136799999999999998764
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=89.22 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHHHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+...+.+...+.. .++.+|||+|||+|.++..++.++. .+|+++|.++.+++.++++++.. + ..++.++++|+.+
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~~ 113 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNALS 113 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHHH
Confidence 3444445554432 3467999999999999987655553 59999999999999999998876 2 3579999999865
Q ss_pred C-CCCCCceeeEEeccccccCCChHHHHHHHHh--cccCCcEEEEEeec
Q 018740 242 L-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (351)
Q Consensus 242 l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~ 287 (351)
. +...++||+|++.--... .-...+++.+.. +|+|+|++++....
T Consensus 114 ~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 114 FLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 3 222457999998655321 122344555554 47899999887543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=98.31 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=80.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++... + ..+++++++|+.++..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~-~--l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL-G--LTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEEcCHHHHHH
Confidence 344455555544568999999999999999999765 9999999999999999998776 2 3579999999977542
Q ss_pred -CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+.||+|++.---. .....+.++...++|+++++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 245799999752200 11122333344467887777754
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=100.26 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l- 242 (351)
.+.+.+...+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++..+ + ..+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~-~--~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN-G--IANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh-C--CCceEEEeCCHHHHH
Confidence 3445566666666678999999999999999998865 8999999999999999998776 2 46899999998652
Q ss_pred ---CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++.+++||+|++.-.= ..-...+++.+.+ ++|+++++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEc
Confidence 2335679999963220 0112455665554 8898887774
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-09 Score=90.21 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=107.9
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS 247 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~ 247 (351)
.+.++...+.+|||...|-|+.+....++|. ..|+-++.+++.++.|.-+--.. +....+++++.+|+.++ .++|.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence 3445666789999999999999999999984 58999999999999887542111 22234689999998664 47799
Q ss_pred ceeeEEeccc-cccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCC-CHHHHHHH
Q 018740 248 SIDAVHAGAA-IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL-SEREIEDL 323 (351)
Q Consensus 248 ~fD~V~~~~v-l~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~l~~l 323 (351)
+||+|+..-- +.+-. --..+.+|++|+|+|||.++-.+-+... .++-. -+..+.+.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--------------------ryrG~d~~~gVa~R 264 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--------------------RYRGLDLPKGVAER 264 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--------------------ccccCChhHHHHHH
Confidence 9999994210 00000 1247889999999999999886654321 01111 24678899
Q ss_pred HHHCCCeEEEEEecCeEEEEEEecC
Q 018740 324 CRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 324 l~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
|+++||.+++..... ..+.|.||
T Consensus 265 Lr~vGF~~v~~~~~~--~gv~A~k~ 287 (287)
T COG2521 265 LRRVGFEVVKKVREA--LGVVAVKP 287 (287)
T ss_pred HHhcCceeeeeehhc--cceEEecC
Confidence 999999988755332 23345554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=89.14 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=111.8
Q ss_pred HHHHHhccC----CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---hC-------------
Q 018740 166 FELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES------------- 225 (351)
Q Consensus 166 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~------------- 225 (351)
.+.|..... .....+||--|||.|+++..++..|. .+.|.|.|--|+-..+-.+.. ..
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 444555444 23456899999999999999999987 999999999987655543331 00
Q ss_pred ---------------------CCCCCCeEEEEecCCCCCCCC---CceeeEEeccccccCCChHHHHHHHHhcccCCcEE
Q 018740 226 ---------------------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 226 ---------------------g~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~l 281 (351)
-....++....+|+..+..++ ++||+|+.++.|.-..+....++.|.++|||||+.
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 001245777778887764444 79999999999988888999999999999999977
Q ss_pred EEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 282 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
+=..|-.-+..+.. ...+..--++.+++..+++..||++++...
T Consensus 199 IN~GPLlyh~~~~~-----------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 199 INFGPLLYHFEPMS-----------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EecCCccccCCCCC-----------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 65444322111000 000112457899999999999999987544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=85.70 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
..-.+.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+. ..+++++.+|+.++. ..+|.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 445577899999999999999998885 59999999999999999998876 688999999999874 5689888
Q ss_pred eccc
Q 018740 254 AGAA 257 (351)
Q Consensus 254 ~~~v 257 (351)
++--
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8643
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=89.25 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=91.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCC-C
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL-P 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~l-p 243 (351)
..+...+...++++|||||.+.|+.+..++...+ +.+++.+|+++++.+.|++++++. |. .+++..+. +|..+. .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~-~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GV-DDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CC-cceEEEEecCcHHHHHH
Confidence 3444444555678999999999999999999877 789999999999999999999988 44 44588888 466432 2
Q ss_pred -CCCCceeeEEeccccccCC-ChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 -FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...++||+|+. .+-. +-..+++.+.++|+|||++++-.....
T Consensus 127 ~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 127 RLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred hccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 34689999995 3332 346889999999999999998655444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=92.88 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.++..++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..++.++.+|+.++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~ 87 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence 44456677777777788999999999999999999865 999999999999999987643 36899999999988
Q ss_pred CCCCCceeeEEecccc
Q 018740 243 PFASSSIDAVHAGAAI 258 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl 258 (351)
+++ .||.|+++--.
T Consensus 88 ~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 88 DLP--EFNKVVSNLPY 101 (258)
T ss_pred Cch--hceEEEEcCCc
Confidence 764 48999886553
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-09 Score=93.77 Aligned_cols=98 Identities=30% Similarity=0.463 Sum_probs=82.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+..++|+|||.|..+.. .|...++|.|++...+..+++. .......+|+.++|+.+.+||.+++..+
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 77899999999976532 2566899999999999988863 2226788999999999999999999999
Q ss_pred cccCCCh---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 258 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 258 l~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+||+... ..+++++.++|+|||...+..+..
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999754 488999999999999988877644
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=92.73 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCeEEEEcCccCHHH----HHHHHhC----CCCeEEEEeCCHHHHHHHHHHHhh-h--C---------------C-C---
Q 018740 178 GGNIIDASCGSGLFS----RIFAKSG----LFSLVVALDYSENMLKQCYEFVQQ-E--S---------------N-F--- 227 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~----~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~-~--~---------------g-~--- 227 (351)
.-+|+..||++|.=. ..+.+.. ...+|+|+|+|+.+++.|++-.=. . + + .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999732 2223322 135899999999999999874200 0 0 0 0
Q ss_pred ------CCCCeEEEEecCCCCCCC-CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEE
Q 018740 228 ------PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 228 ------~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~ 284 (351)
-...|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 014578888888775543 578999999999999965 468999999999999998874
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.1e-09 Score=94.45 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=70.7
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.....+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++.|++.+++++. .++++++.+|+.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence 345566777777777788999999999999999999986 99999999999999988642 2589999999998
Q ss_pred CCCCCCceeeEEecc
Q 018740 242 LPFASSSIDAVHAGA 256 (351)
Q Consensus 242 lp~~~~~fD~V~~~~ 256 (351)
+++++-.+|.|+++-
T Consensus 99 ~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 99 VDLSELQPLKVVANL 113 (272)
T ss_pred CCHHHcCcceEEEeC
Confidence 876542257777653
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=80.54 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=105.4
Q ss_pred hhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 154 FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
-+..-.+...-.++.+...+....+.-|||+|.|||.++.++..++ ++..++.+|.|++......+. .+.+
T Consensus 25 tVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~ 96 (194)
T COG3963 25 TVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGV 96 (194)
T ss_pred eeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCc
Confidence 3444455666678888888999889999999999999999999886 356899999999999999886 5777
Q ss_pred EEEEecCCCCC-----CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 233 LLVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 233 ~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.++.+|+.++. ..+..||.|+|.--+-.++-. .+.|+++...|.+||.++..++..
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 79999998764 456789999998877777633 488999999999999999988763
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=84.93 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=75.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCcee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSID 250 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD 250 (351)
...+.+|||+|||+|..+..++......+|+..|.++ .++..+.++..+......++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4457899999999999999999884456999999998 9999999888761112466777777764411 2346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|++..+++.-.....+++-+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999986667789999999999999977776654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=90.08 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=88.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CC-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp- 243 (351)
..+...+...++++|||||+++|..+..++... +..+++.+|.++...+.|+++++.. |. ..+++++.+|+.+ ++
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl-~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GV-SHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHH
Confidence 334444455557899999999999999998763 3568999999999999999999887 44 4689999999855 22
Q ss_pred C----CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+ ..++||+|+.-.. -.+....++.+.++|+|||++++....
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1 1368999996433 123457788999999999999885443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=91.64 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~ 241 (351)
.+.+..+.+.....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.++... + .....+... |+.+
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y-~--i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYY-G--IEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhh-C--cCceeEEEeccccc
Confidence 45566777777788899999999999999999888876 9999999999999999999876 1 356666666 9999
Q ss_pred CCCCCCceeeEEeccccc-----cCCC----hHHHHHHHHhcccCCcEEEEEee
Q 018740 242 LPFASSSIDAVHAGAAIH-----CWSS----PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~-----h~~d----~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|++++++|.|++---.- .... ...+|+.+.++|++||++++..+
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999988999999742110 1111 24789999999999999998665
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=87.76 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCeEEEEcCccCHHH----HHHHHh-----CCCCeEEEEeCCHHHHHHHHHHH-hhh--C---------------CCC-
Q 018740 177 LGGNIIDASCGSGLFS----RIFAKS-----GLFSLVVALDYSENMLKQCYEFV-QQE--S---------------NFP- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~----~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~-~~~--~---------------g~~- 228 (351)
+.-+|+..||++|.=. ..+.+. ....+++|.|+|+.+++.|++-. ... + |..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999732 222331 11468999999999999998622 000 0 100
Q ss_pred ------CCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 018740 229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 229 ------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~ 284 (351)
..++.|.+.|+.+.+...+.||+|+|.+||-++... ..+++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 136899999998844456889999999999999755 58899999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=86.59 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHHhccCCC---CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
++.++.+.+.+... .+..|||+|||+|..+..++...+.+.|+++|.|+.++..|.+++... + ...++..+..++
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~-~-l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL-K-LSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH-h-hcCceEEEeccc
Confidence 44556666555432 345799999999999999999888899999999999999999998876 2 246677775544
Q ss_pred CC-----CCCCCCceeeEEecccc-cc--C-----------------------CChHHHHHHHHhcccCCcEEEEEeec
Q 018740 240 SR-----LPFASSSIDAVHAGAAI-HC--W-----------------------SSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 240 ~~-----lp~~~~~fD~V~~~~vl-~h--~-----------------------~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+. .+...+++|+++++--. -+ + .....++.-+.|+|+|||.+.+....
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 32 24557899999987321 00 0 00124566778999999999997764
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-09 Score=103.47 Aligned_cols=114 Identities=24% Similarity=0.355 Sum_probs=79.9
Q ss_pred HHHHHHHHhccCC----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
...++.|.+.+.. ..-..+||||||+|.|+..+.+++- .+..+ |..+..++.|.++ | +..+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR-----G-----vpa~ 166 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER-----G-----VPAM 166 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc-----C-----cchh
Confidence 4455666666654 2224689999999999999999853 22222 3344555666553 2 2223
Q ss_pred Eec--CCCCCCCCCceeeEEeccccccCC-ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 236 RAD--ISRLPFASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 236 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+- -..+||++++||+|.|...+-.+. +-..+|-++.|+|+|||+++++.+-.
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 222 468999999999999999886654 33577999999999999999987653
|
; GO: 0008168 methyltransferase activity |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=84.59 Aligned_cols=111 Identities=23% Similarity=0.341 Sum_probs=85.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHhhhC-------CCCCCCeEEEE
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G-LFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVR 236 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~gvD~s~~~~~~a~~~~~~~~-------g~~~~~i~~~~ 236 (351)
++.+...| .++.+.||+|+|+|+++..++.. + ++..++|||.-++.++.+++++.... .....++.++.
T Consensus 73 le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 73 LEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 44555444 45889999999999999888754 2 23355999999999999999887652 12246788999
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|....-.+..+||.|++... .....+++...|+|||.+++-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 999887667889999998744 334467788899999999884
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-08 Score=87.34 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=69.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.++ .++++|+++.+++.+++++.. ..++.++.+|+..+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence 44456677777777788999999999999999999986 799999999999999987533 36899999999988
Q ss_pred CCCCCcee---eEEecc
Q 018740 243 PFASSSID---AVHAGA 256 (351)
Q Consensus 243 p~~~~~fD---~V~~~~ 256 (351)
+++ .+| +|+++-
T Consensus 88 ~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNL 102 (253)
T ss_pred Chh--HcCCcceEEEcC
Confidence 764 466 565543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-08 Score=83.10 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLL 234 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~ 234 (351)
.++..+.......++..|||--||+|.++...+..+.... ++|.|+++.+++.|++++... |. ...+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g~-~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-GV-EDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T--CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-cc-CCceEE
Confidence 3455666666777788999999999999988877765445 889999999999999999876 33 456899
Q ss_pred EEecCCCCCCCCCceeeEEecccccc-CCCh-------HHHHHHHHhcccCCcEEEE
Q 018740 235 VRADISRLPFASSSIDAVHAGAAIHC-WSSP-------STGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 235 ~~~d~~~lp~~~~~fD~V~~~~vl~h-~~d~-------~~~l~~i~~~LkpgG~li~ 283 (351)
.+.|+.++++.++++|+|+++--.-. +.+. ..+++++.++|++ ..+++
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 99999999987889999998744321 1111 2668889999999 33333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=87.43 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-----CCCCc
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSS 248 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-----~~~~~ 248 (351)
.+.++|||||+++|+.+..+++..+ .++++.+|+++...+.|++.+... |. ..+++++.+|+.+. + ...++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g~-~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-GL-DDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-TG-GGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-CC-CCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3456999999999999999998754 579999999999999999999876 33 46899999998652 2 11358
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
||+|+.-..= .+....++.+.++|+|||++++....
T Consensus 122 fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 122 FDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred eeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 9999975431 23457788899999999999985443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=85.74 Aligned_cols=147 Identities=11% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCC----CCCCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp----~~~~~fD~ 251 (351)
.+.++||||||+|.....++.+.+.++++|+|+++.+++.|+++++.+.+ ...++.+.. .|...+. .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEE
Confidence 45799999999998888887776667999999999999999999887511 134677754 3333221 23678999
Q ss_pred EEeccccccCCCh-----HHHHHHH----------------HhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---
Q 018740 252 VHAGAAIHCWSSP-----STGVAEI----------------SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--- 307 (351)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i----------------~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--- 307 (351)
|+|+=-++--.+. ..-.+.+ .+++.+||.+-+..+... ........
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~----------eS~~~~~~~gw 262 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE----------ESKAFAKQVLW 262 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH----------HHHHHHhhCcE
Confidence 9998665432211 1112222 234456666555443321 11111111
Q ss_pred cc-CCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 308 IS-GSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 308 ~~-~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+. -....-+...+.+.|++.|...+++
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEE
Confidence 00 0011227899999999999966553
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-07 Score=75.29 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=95.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
......+||||||+|..+..+++. +++..+.++|+++.+++..++-+..+ ..++..+++|+..-- ..++.|+++
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDvLv 115 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDVLV 115 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccEEE
Confidence 333568999999999999998876 66778899999999999988877766 567889999986532 248899998
Q ss_pred eccccc-----cC------------CC----hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCc
Q 018740 254 AGAAIH-----CW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312 (351)
Q Consensus 254 ~~~vl~-----h~------------~d----~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (351)
.+--.. .+ .| .++++..+-.+|.|.|++++.....+
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------------- 172 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------------- 172 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------
Confidence 763221 11 01 23667777788899999998654322
Q ss_pred cCCCHHHHHHHHHHCCCeEEE
Q 018740 313 TFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 313 ~~~s~~~l~~ll~~aGf~~v~ 333 (351)
.++++.++++.-||....
T Consensus 173 ---~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 173 ---KPKEILKILEKKGYGVRI 190 (209)
T ss_pred ---CHHHHHHHHhhcccceeE
Confidence 356788899999997654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=93.42 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=72.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
+..|||||||+|.++...++.+ ...+|+++|-++.+....++++..+ + -..+|+++.+|++++..+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~-w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-G-WGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-T-TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-C-CCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999999988776664 2469999999999888877765544 2 257899999999998754 4899999
Q ss_pred eccc--cccCCChHHHHHHHHhcccCCcEEE
Q 018740 254 AGAA--IHCWSSPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 254 ~~~v--l~h~~d~~~~l~~i~~~LkpgG~li 282 (351)
+-.. +-.-.-....|....|.|||||+++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7322 2111122356888899999999765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=90.58 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.+ + ..++.+..+|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~--~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-G--LENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 46899999999999999987654458999999999999999998876 2 3567789999866422145799999742
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
...+..++....+.+++||+++++.
T Consensus 134 ---~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 ---FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1455678888788899999999983
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=93.39 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF- 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~- 244 (351)
++.+..++...++.+|||++||+|.++..++..+. +|+|+|+++.+++.|+++++.. + ..+++++.+|+.+...
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~-~--~~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML-G--LDNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHHh
Confidence 34444554434567999999999999999997764 9999999999999999998776 2 3589999999866421
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..++||+|++.=--.. -...+++.+. .++|+++++++.
T Consensus 297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 1246999987532111 1134455554 478999888864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=89.99 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=71.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... +. ..+++++.+|+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~-~~-~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS-PL-ASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc-CC-CCcEEEEECCHhhh
Confidence 44556777777777788999999999999999999875 8999999999999999988754 11 36899999999876
Q ss_pred CCCCCceeeEEec
Q 018740 243 PFASSSIDAVHAG 255 (351)
Q Consensus 243 p~~~~~fD~V~~~ 255 (351)
++ ..||.|+++
T Consensus 98 ~~--~~~d~VvaN 108 (294)
T PTZ00338 98 EF--PYFDVCVAN 108 (294)
T ss_pred cc--cccCEEEec
Confidence 64 368988875
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=97.45 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~ 254 (351)
....+||||||.|.++..++...|+..++|+|++...+..+.+++... +..|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 456899999999999999999999999999999999888888776654 257888888887533 256788999996
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++ ||| ..+|+.++++|+|||.+.+.|-.
T Consensus 424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 54 444 48899999999999999987654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=82.97 Aligned_cols=147 Identities=20% Similarity=0.127 Sum_probs=90.8
Q ss_pred CCCeEEEEcCcc--CHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC--eEEEEecCCCCC--------
Q 018740 177 LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISRLP-------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~--i~~~~~d~~~lp-------- 243 (351)
.-...||||||- -..+..+++ ..|.++|+.+|.+|-.+..++..+... ++ ..++++|+.+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHHHhcCHHH
Confidence 346899999994 234555544 477889999999999999999988765 45 899999997642
Q ss_pred ---CCCCceeeEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 244 ---FASSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d---~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
+.-...=.|++..+|||++| |..+++.++..|.||.+|+++-...+.. ..........+..........+.
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHHHHHHHHHHHCCS----B-H
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHHHHHHHHHHcCCCCceecCH
Confidence 11122337888999999965 7799999999999999999998876532 11123344444444556677899
Q ss_pred HHHHHHHHHCCCeEEE
Q 018740 318 REIEDLCRACGLVDFK 333 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~ 333 (351)
+++..++. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999987 888766
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=88.56 Aligned_cols=104 Identities=15% Similarity=0.285 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
...++.|||||||+|.++...++.| ..+|+++|-|. +++.|++.+..+ +. ...++++.+.++++.+|-++.|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N-~~-~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDN-GL-EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhc-Cc-cceEEEeecceEEEecCccceeEEee
Confidence 4467899999999999999999999 47999999876 458888887776 22 45699999999987766789999998
Q ss_pred ccccccCC---ChHHHHHHHHhcccCCcEEE
Q 018740 255 GAAIHCWS---SPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 255 ~~vl~h~~---d~~~~l~~i~~~LkpgG~li 282 (351)
-+.=+.+- -....|-.=-+.|+|||.++
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 65533321 12344444458999999875
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-08 Score=92.13 Aligned_cols=110 Identities=27% Similarity=0.371 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++..++|+|||.|.....+.... ...++|+|.++..+..+....... ++ .....++.+|+.+.|++++.||.+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~-~l-~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA-YL-DNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH-Hh-hhhcceehhhhhcCCCCccccCcEEEE
Confidence 346689999999999999888765 458999999998888877655443 12 233445888999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+..|.+++..+++|++|+++|||+++..++..
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 999999999999999999999999999977654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=84.54 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=86.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~ 244 (351)
..+...+...+.++|||||+++|+.+..++... +.++++.+|.++...+.|++.+... |. ..+++++.+++.+. +-
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~-~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-GV-AHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CC-CCceEEEeccHHHHHHH
Confidence 334444444456799999999999999988763 4679999999999999999999887 44 58899999998552 21
Q ss_pred ------CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ------~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..++||+|+.-.-= ......++.+.++|+|||++++-..
T Consensus 147 l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 13689999964331 1234667888899999999887433
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=80.21 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeE-EEEecCCCC-----CCCCCce
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRL-----PFASSSI 249 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~-~~~~d~~~l-----p~~~~~f 249 (351)
.++.++||+|||+|.++..+++.+ ..+|+|+|+++.|+....+. .+++. +...|+..+ +..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhHcCCCceee
Confidence 457799999999999999999986 35899999999888762221 23322 333344322 2122367
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEE-eeccCCCCCcchHHHHHHHHHhh----ccCCccCCCHHHHHHHH
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT-TYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREIEDLC 324 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~l~~ll 324 (351)
|+++++..+ .+..+.+.|+| |.+++. -|-. +.-...... .....+..-.+.+...+
T Consensus 145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqF----------E~~~~~~~~~giv~~~~~~~~~~~~~~~~~ 205 (228)
T TIGR00478 145 DVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQF----------EAGREKKNKKGVVRDKEAIALALHKVIDKG 205 (228)
T ss_pred eEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHh----------hhcHhhcCcCCeecCHHHHHHHHHHHHHHH
Confidence 777755443 48889999999 766543 2221 111100000 00011122346677788
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
.+.||.+.....
T Consensus 206 ~~~~~~~~~~~~ 217 (228)
T TIGR00478 206 ESPDFQEKKIIF 217 (228)
T ss_pred HcCCCeEeeEEE
Confidence 889998876543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-07 Score=71.77 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=76.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.+.+.+.+...++.+|||||||.|. ++..|++.|. +|+++|+++..++.++++ .+.++.+|+.+..+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 4556666655566899999999996 8888888876 999999999999888764 46789999987654
Q ss_pred C-CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 A-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
. -..+|+|.+..- -++....+.++++.+ |.-+++.....+
T Consensus 73 ~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 73 EIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 3 456899987543 123344455555543 455676665544
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=76.82 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=76.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C-CCC-ceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-~~~-~fD~V 252 (351)
.+.++||++||+|.++..++.++. ..|+++|.++.+++.++++++.. +. ..+++++.+|+.+. . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~~-~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-KS-GEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-CC-cccEEEEehhHHHHHHHhhccCCCceEE
Confidence 467999999999999999999985 48999999999999999998876 22 24689999998442 2 1 122 47887
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEeec
Q 018740 253 HAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI 287 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~--~~LkpgG~li~~~~~ 287 (351)
+..=-+.. ......++.+. .+|+++|++++....
T Consensus 126 ~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 126 YLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 76433221 22234444443 478899988886543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=85.78 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
.+.+||.||+|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3568999999999999999887555689999999999999999875431 12258999999998653 334578999997
Q ss_pred ccccccCC-C------hHHHHH-HHHhcccCCcEEEEE
Q 018740 255 GAAIHCWS-S------PSTGVA-EISRVLRPGGVFVGT 284 (351)
Q Consensus 255 ~~vl~h~~-d------~~~~l~-~i~~~LkpgG~li~~ 284 (351)
-.. .... . -..+++ .+.+.|+|||++++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 521 2110 1 135677 899999999998774
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=82.40 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-CCCeEEEEecCCCC-CCCCCceee
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL-PFASSSIDA 251 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~-~~~i~~~~~d~~~l-p~~~~~fD~ 251 (351)
.+.+ ++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....+.. .++++++..|..+. .-...+||+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 3444 69999999999999999999877899999999999999999987763122 48999999998664 222347999
Q ss_pred EEeccccccCCCh------HHHHHHHHhcccCCcEEEEE
Q 018740 252 VHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 252 V~~~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~ 284 (351)
|++...=. . .| ..+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99754311 1 22 68899999999999999986
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=81.26 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCeEEEEcCccCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---------------CCCC----------C
Q 018740 177 LGGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPK----------E 230 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------------g~~~----------~ 230 (351)
++.++||||||.-..-. .+.+.. .+++..|.++.-.+..++.+.... |... .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46799999999854322 222333 389999999988887777665431 1100 0
Q ss_pred Ce-EEEEecCCCCC-CCC-----CceeeEEeccccccCC-ChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH
Q 018740 231 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (351)
Q Consensus 231 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (351)
.| .++.+|+.+.+ +.. .+||+|++...|+... |+. .+++++.++|||||.|++...........
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v----- 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV----- 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE-----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE-----
Confidence 12 36778887643 322 2599999999998764 554 78999999999999999977653321000
Q ss_pred HHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 300 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
....-.....+++.+++.|+++||.+++..
T Consensus 209 ------G~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 ------GGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ------TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ------CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 000002235689999999999999988755
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-07 Score=78.51 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=75.6
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
++...+. ++..|||+-||.|.++..+++.+....|+++|++|.+++..++++..+ +. ...+..+.+|...+.. .+
T Consensus 94 Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv-~~~i~~~~~D~~~~~~-~~ 168 (200)
T PF02475_consen 94 RIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-KV-ENRIEVINGDAREFLP-EG 168 (200)
T ss_dssp HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEES-GGG----TT
T ss_pred HHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-CC-CCeEEEEcCCHHHhcC-cc
Confidence 4555543 478999999999999999999655669999999999999999999887 33 4668999999988764 78
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEE
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~l 281 (351)
.+|-|++... ..-..+|..+.+++++||++
T Consensus 169 ~~drvim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 169 KFDRVIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred ccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 8999997543 22345788899999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=74.92 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=71.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.+-.+...++.++|+|||.|-++....-.. ...|+|+|+++++++.+++++.+. ..+++++++|+.++-+..
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence 344444555678899999999999996555444 458999999999999999998887 577899999999988778
Q ss_pred CceeeEEecccc
Q 018740 247 SSIDAVHAGAAI 258 (351)
Q Consensus 247 ~~fD~V~~~~vl 258 (351)
+.||.++.+--+
T Consensus 113 g~fDtaviNppF 124 (185)
T KOG3420|consen 113 GIFDTAVINPPF 124 (185)
T ss_pred CeEeeEEecCCC
Confidence 999999987654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=80.03 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=73.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.....++..|||||+|.|.++..|++.+. .|+++|+++.+++..++.+.. ..+++++.+|+...
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 44567788888888888999999999999999999987 899999999999999998653 48999999999998
Q ss_pred CCCCC-ceeeEEec
Q 018740 243 PFASS-SIDAVHAG 255 (351)
Q Consensus 243 p~~~~-~fD~V~~~ 255 (351)
+++.- .++.|+++
T Consensus 89 d~~~l~~~~~vVaN 102 (259)
T COG0030 89 DFPSLAQPYKVVAN 102 (259)
T ss_pred cchhhcCCCEEEEc
Confidence 87653 57777765
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-07 Score=85.69 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=76.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+.+++...+ .+|||++||+|.++..+++... +|+|+|+++.+++.|++++..+ + ..++.++.+|+.++-
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~-~--~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN-N--IDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEEcCHHHHH
Confidence 34455556554322 4799999999999999998865 9999999999999999998876 2 357999999986631
Q ss_pred CC----------C------CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FA----------S------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.. . ..||+|+..=- . -.-...+++.+. +|+++++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 10 1 13798885211 0 000124444443 47888888643
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=78.91 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCeEEEEcCccCH----HHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHhh---h-C-------------CCC---
Q 018740 178 GGNIIDASCGSGL----FSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQ---E-S-------------NFP--- 228 (351)
Q Consensus 178 ~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~---~-~-------------g~~--- 228 (351)
.-+|+-+||++|. ++..+.+.+ ...+|+|.|+|..+++.|+.-.=. . + +..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 333333444 257899999999999999862210 0 0 000
Q ss_pred ------CCCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 018740 229 ------KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 229 ------~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~ 284 (351)
...|.|...|+..-++..+.||+|+|-+|+-++..+ .+++..++..|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 124677777776655456779999999999999755 48899999999999999984
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-06 Score=74.77 Aligned_cols=111 Identities=17% Similarity=0.291 Sum_probs=93.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..++...|...||.+|+|-|.|+|.++.++++. +|.++++-+|+.+...+.|++.+.+. |. .+++.+..-|+....|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-gi-~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-GI-GDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-CC-CcceEEEEeecccCCc
Confidence 457888889999999999999999999999987 67779999999999999999998887 44 7899999999977654
Q ss_pred C--CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 245 A--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 245 ~--~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
. +..+|+|+ -.++.|..++-.++.+||.+|.-++
T Consensus 172 ~~ks~~aDaVF-----LDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 LIKSLKADAVF-----LDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccccceEE-----EcCCChhhhhhhhHHHhhhcCceEE
Confidence 3 56788887 3578899999999999999875433
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-07 Score=84.60 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=89.4
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPK 229 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~ 229 (351)
+.++.|....+.+...+...++.+|+|..||+|.++..+.+. .....++|+|+++.++..|+-++.-. |...
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GIDN 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THHC
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cccc
Confidence 457788999999999998888889999999999999888763 24568999999999999998776543 2223
Q ss_pred CCeEEEEecCCCCCCC--CCceeeEEeccccccC--------CC-------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 230 ENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--------SS-------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+..+..+|....+.. ...||+|+++--+--. .+ ...++..+.+.|++||++.+..|
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 4456788887554432 4789999986322110 01 12678999999999999988877
Q ss_pred c
Q 018740 287 I 287 (351)
Q Consensus 287 ~ 287 (351)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 5
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=85.03 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=89.2
Q ss_pred HHhcc--CCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-C
Q 018740 169 MKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 244 (351)
Q Consensus 169 l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~ 244 (351)
....+ .+.++.+|||+++|.|.-+..++... ....+++.|+++.-++..++++... | ..++.+...|...++ .
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~-G--~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC-G--VSNVALTHFDGRVFGAA 179 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCchhhhhhh
Confidence 34444 66788999999999999888888764 2458999999999999999999887 3 467888888887653 2
Q ss_pred CCCceeeEE----ec--cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 ASSSIDAVH----AG--AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~~~fD~V~----~~--~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..+.||.|+ |+ +++..-++ ...+|..+.+.|||||+|+.+|-..
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 245799999 44 23332221 1477899999999999998887653
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=85.49 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=86.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD~V~ 253 (351)
|++|||+=|=||.++...+..|. .+|++||.|...++.|++++..+ |....++.++++|+.+. .-...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 88999999999999999998874 59999999999999999999998 66667899999998664 22345899999
Q ss_pred ecc---------ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~---------vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+-= ...-..+-..++..+.++|+|||.+++.+..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 631 1111123347788999999999999987654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=85.49 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+++.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.+++++..+ + ..++.++.+|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~-~--~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN-G--IDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEECCHHHH
Confidence 34455666655432 35799999999999999988765 9999999999999999998776 2 35899999998653
Q ss_pred -C-CC--------------CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+ +. ...||+|+..=- . -.-...+++.+. +|+++++++..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 1 10 125899985211 0 000123444443 37888877543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-06 Score=72.59 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 259 (351)
+++|||+|.|.-+..++=..|..+++.+|....-+...+.-.... +..|+++++..+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 899999999999988888888889999999988777777766655 25789999999988 445788999998766
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEE
Q 018740 260 CWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.....+++-+...|++||.+++.
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 56778889999999999998874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=78.86 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.-.++.|||+|||+|.++...++.|. .+|++++-|+ |.++|++.++.+ ...++|.++.+.++++.+| ++.|+|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEEe
Confidence 44678999999999999999999984 6899999765 999999988776 3378999999999998765 56999997
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEE
Q 018740 255 GAAIHCWSSPS--TGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 255 ~~vl~h~~d~~--~~l~~i~~~LkpgG~li~ 283 (351)
--.=.-+-+.. ...-..++.|+|.|.++=
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 43211111211 223345699999998764
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-06 Score=68.41 Aligned_cols=104 Identities=31% Similarity=0.486 Sum_probs=76.1
Q ss_pred EEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCC--CCCCC-CceeeEEec
Q 018740 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG 255 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~--lp~~~-~~fD~V~~~ 255 (351)
++|+|||+|... .+...... ..++|+|+++.++..++...... ... +.+...|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 33333222 37899999999999855443211 111 6788888876 77776 489999 55
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 290 (351)
....|..++...+.++.+.|+|+|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 55444444889999999999999999998877543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-06 Score=70.72 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=90.4
Q ss_pred EEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCCCCCCceeeEEeccccc
Q 018740 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~~vl~ 259 (351)
|.||||-.|++...|.+.+.-.+++++|+++..++.|++.+... |. ..++++..+|- ..++ +.+..|.|+..++=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-~l-~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-GL-EDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-T--TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CC-cccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 68999999999999999987778999999999999999999887 33 57899999995 4444 223378888766522
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE---EEe
Q 018740 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK---CTR 336 (351)
Q Consensus 260 h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~---~~~ 336 (351)
. -....|++....++....|++.... ....++++|.+.||.+++ +..
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~~----------------------------~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPNT----------------------------HAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEESS-----------------------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCCC----------------------------ChHHHHHHHHHCCCEEEEeEEEeE
Confidence 1 1235666666666665566663221 456899999999999888 344
Q ss_pred cCe-EEEEEEec
Q 018740 337 NRG-FVMFTATK 347 (351)
Q Consensus 337 ~g~-~~~~~a~k 347 (351)
.+. +.++.+.+
T Consensus 128 ~~~~YeIi~~~~ 139 (205)
T PF04816_consen 128 NGRFYEIIVAER 139 (205)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCEEEEEEEEEe
Confidence 454 44444443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=77.23 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=76.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-CCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLP 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~lp 243 (351)
+..+...+..-.+.+|||+|||.|..+.++.+..+ ..+++++|.|+.|++.++..+....+ ............ ..+
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhccccc
Confidence 44555555555667999999999988777766532 34899999999999999987655411 111111111111 122
Q ss_pred CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+ ...|+|++.++|..+++. ..+++.+.+.+.+ .|+++++..
T Consensus 100 ~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 100 F--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred C--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 2 234999999999988872 2555666555555 888888764
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=76.75 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=77.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.+++||=||.|.|..++.+.+.-. +|+-+|+++.+++.+++.+... ++...++++++.. +.+. ..++||+|+.-
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence 367999999999999999999843 9999999999999999966543 1334678888762 2221 23689999975
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.. .+..+.+.+++.|+|||+++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 32 44678899999999999999853
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-07 Score=79.86 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=73.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.++||+|.|.|..+..++.... +|++.+.|..|....+++ .-++ + ...+..-.+-+||+|.|.++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynV--l--~~~ew~~t~~k~dli~clNl 178 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNV--L--TEIEWLQTDVKLDLILCLNL 178 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCce--e--eehhhhhcCceeehHHHHHH
Confidence 46899999999999999988765 899999999998888764 1222 1 11111112346999999999
Q ss_pred cccCCChHHHHHHHHhcccC-CcEEEEEe
Q 018740 258 IHCWSSPSTGVAEISRVLRP-GGVFVGTT 285 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~Lkp-gG~li~~~ 285 (351)
|..-.+|-++|+.+..+|+| +|.+++.-
T Consensus 179 LDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 179 LDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 99888999999999999999 88877644
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=78.21 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~ 253 (351)
.+++|||+=|=||.++...+..|. .+|+.||.|..+++.+++++..+ |....++++++.|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 367999999999999999887763 57999999999999999999988 55557899999998652 1 1246899999
Q ss_pred ecc---c---cccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGA---A---IHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~---v---l~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+-- . ..-..+-..++..+.++|+|||.+++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 631 1 000113347788899999999998876553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=75.25 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=84.3
Q ss_pred HHHHHHHHhccCC--CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 163 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
++..+.+-..+.. -.+.++||+-||+|.++.....+|. .+|+.+|.++..++..+++++.. +. ..++..+..|+.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l-~~-~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKL-GL-EDKIRVIKGDAF 102 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH-T--GGGEEEEESSHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHh-CC-CcceeeeccCHH
Confidence 3444444444443 3678999999999999999999984 59999999999999999999876 22 235888888854
Q ss_pred C-CC---CCCCceeeEEeccccccCCC-hHHHHHHHH--hcccCCcEEEEEeecc
Q 018740 241 R-LP---FASSSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV 288 (351)
Q Consensus 241 ~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~--~~LkpgG~li~~~~~~ 288 (351)
. ++ .....||+|++.=-... .. ...+++.+. .+|+++|++++.....
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 3 21 24678999997533222 22 256677776 7999999999987654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=78.00 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCC-ceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~-~fD~V~ 253 (351)
.+.+||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+.... +...++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999987656799999999999999999876531 12357999999998543 22233 899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-..-...+. -..+++.+++.|+|||++++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 7433211111 248899999999999999987643
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=73.76 Aligned_cols=105 Identities=15% Similarity=0.068 Sum_probs=77.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHh-hhCCCCCCCeEE--EEecCCCC----CC-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLL--VRADISRL----PF- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~-~~~g~~~~~i~~--~~~d~~~l----p~- 244 (351)
++..|+|+|||+|.-+..|.+. +....++++|+|..+++.+.+++. .. .+.+.+ +++|+.+. +-
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhcccc
Confidence 3568999999999876655543 334589999999999999999988 43 455555 88888552 21
Q ss_pred -CCCceeeEEec-cccccCCChH--HHHHHHHh-cccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~-~vl~h~~d~~--~~l~~i~~-~LkpgG~li~~~ 285 (351)
......+++.. .+|..++..+ .+|+++++ .|+|||.+++..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12335666655 4788876554 88999999 999999988854
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=79.42 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
.+.+.+.+.+.+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. ..++.++.+|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence 45667777777788999999999999999999864 57999999999999999987643 258999999998753
Q ss_pred -CCCC--ceeeEEecccc--ccCCChH
Q 018740 244 -FASS--SIDAVHAGAAI--HCWSSPS 265 (351)
Q Consensus 244 -~~~~--~fD~V~~~~vl--~h~~d~~ 265 (351)
.+.+ ++|.|++.... +++.++.
T Consensus 83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred HHHcCCCccCEEEECCCccccccCCCc
Confidence 1122 79999986433 3444543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-06 Score=74.51 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=71.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.......++..|||+|.|||.++..+.+.+. +|+++|+++.|+....++.+... ......++.+|+...++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCCC
Confidence 356677777778899999999999999999999987 99999999999999999876540 13578999999988764
Q ss_pred CCCceeeEEec
Q 018740 245 ASSSIDAVHAG 255 (351)
Q Consensus 245 ~~~~fD~V~~~ 255 (351)
..||.++++
T Consensus 122 --P~fd~cVsN 130 (315)
T KOG0820|consen 122 --PRFDGCVSN 130 (315)
T ss_pred --cccceeecc
Confidence 369999974
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=83.00 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.+++...++.++||+=||.|.++..+++... +|+|+|+++.+++.|+++++.+ +..|+.|..++++++
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n---~i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN---GIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc---CCCcEEEEeCCHHHH
Confidence 45667777888887888999999999999999998866 9999999999999999999988 357799999999886
Q ss_pred CCC---CCceeeEEeccccccCCChH------HHHHHHHhcccCCcEEEEEee
Q 018740 243 PFA---SSSIDAVHAGAAIHCWSSPS------TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 p~~---~~~fD~V~~~~vl~h~~d~~------~~l~~i~~~LkpgG~li~~~~ 286 (351)
... ...+|+|+. ||. .+++.+ ..++|..+++++..
T Consensus 354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l-~~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQL-AKLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEE--------CCCCCCCCHHHHHHH-HhcCCCcEEEEeCC
Confidence 533 347899994 542 344443 44678888888643
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=74.85 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=70.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCCCCCeEEEEecCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS 240 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~~~~i~~~~~d~~ 240 (351)
..+.+.++..++...+|+|||.|......+....-.+.+|+|+.+...+.|+...... .|....++++..+|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 3455566777789999999999998877766544446999999999888877543321 1344567888899987
Q ss_pred CCCCCC---CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 241 RLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 241 ~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+.++.. ...|+|++++..- -++....|.++...||+|-+++-.
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 644211 3479999987642 123456678888889998877643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9e-06 Score=75.38 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
..+++..... |.+|||+=+|.|.++..+++.+.. .|+++|++|.+++..++++..+ +. ...+..+.+|....+..
T Consensus 179 R~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN-~v-~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 179 RARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLN-KV-EGRVEPILGDAREVAPE 253 (341)
T ss_pred HHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhc-Cc-cceeeEEeccHHHhhhc
Confidence 3455555554 889999999999999999999863 3999999999999999999887 22 34488999999888755
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+.+|-|++... .+...++..+.+.+++||++-..+...+
T Consensus 254 ~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 254 LGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred cccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 588999998654 3456778888999999999988776654
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=68.06 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~ 245 (351)
..++..|+|+|+..|.+++.+++.. +...|+|+|+.|-- ..+++.++++|+..-+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 3457899999999999999998874 34459999997731 2577999999997643 33
Q ss_pred CCceeeEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl--------~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...+|+|++-.+- +|.... ..++.-+..+|+|||.+++-.+..+
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 4557999965432 222111 2556666789999999999877654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-05 Score=65.95 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=93.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+++|||+|.|.=+..++-..|+.+|+-+|....-+...+.-..+- +..|++++++.++++.-....||+|++-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 57999999999999988887778889999999987777776665554 357899999999987632112999998665
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.+...++.-....+++||.+++.-.. ... + -..+.+......|+.+.++.
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~~------------~~~----~--------e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKGL------------AGK----D--------ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhHH------------hhh----h--------hHHHHHHHHHhhcCcEEEEE
Confidence 45566677778899999987652110 000 0 22467778888888887744
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=72.79 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=95.1
Q ss_pred hhhhhhhhhhhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-----------------------
Q 018740 145 IYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF----------------------- 201 (351)
Q Consensus 145 ~~~~~~r~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------- 201 (351)
+..++||..-..+ +--+.++..+....+..++..++|--||+|.++...+..+.+
T Consensus 161 LhkRGyR~~~g~A--pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 161 LHKRGYRVYDGPA--PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhhccccccCCCC--CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 3456666543222 112344555666666666779999999999999988877631
Q ss_pred ---------C-------eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc-ccCCCh
Q 018740 202 ---------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCWSSP 264 (351)
Q Consensus 202 ---------~-------~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~ 264 (351)
. .++|+|+++.+++.|+.++... |. .+.|+|.++|+..++-+-+.+|+|+|+--. +-+.+.
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A-Gv-~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA-GV-GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc-CC-CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 2779999999999999999887 44 677999999999987544789999997432 223332
Q ss_pred ---H----HHHHHHHhcccCCcEEEEEee
Q 018740 265 ---S----TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 265 ---~----~~l~~i~~~LkpgG~li~~~~ 286 (351)
. .+.+.+++.++--+.+++++.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2 334455566666667776544
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=65.23 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred cHHHHHHHHhccCC--CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 162 PEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 162 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
.++..+.+-+.+.+ ..+.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++.. +. ..+..++..|+
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-~~-~~~~~~~~~da 102 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-GL-EGEARVLRNDA 102 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-CC-ccceEEEeecH
Confidence 34555666666665 5688999999999999999999984 58999999999999999998876 11 36788888888
Q ss_pred CCC-CCCCC--ceeeEEeccccc-cCCChHHHHHH--HHhcccCCcEEEEEeec
Q 018740 240 SRL-PFASS--SIDAVHAGAAIH-CWSSPSTGVAE--ISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 240 ~~l-p~~~~--~fD~V~~~~vl~-h~~d~~~~l~~--i~~~LkpgG~li~~~~~ 287 (351)
... +-... .||+|+.-=-++ -+.++...+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 743 11222 499999754443 12222333333 45779999999997654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=79.55 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=65.3
Q ss_pred CCCCCcHHHHHHHHhccCCC-------CCCeEEEEcCccCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHH
Q 018740 157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV 221 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~ 221 (351)
+.|+.|....+.+...+... ...+|||.|||+|.++..+.+..+ ...++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 34566677777776655221 345899999999999988877542 257899999999999999987
Q ss_pred hhhCCCCCCCeEEEEecCCCC-----CCCCCceeeEEec
Q 018740 222 QQESNFPKENFLLVRADISRL-----PFASSSIDAVHAG 255 (351)
Q Consensus 222 ~~~~g~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~ 255 (351)
... + ...+.+...|.... .-..+.||+|+.+
T Consensus 84 ~~~-~--~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 84 GEF-A--LLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred hhc-C--CCCceeeecccccccccccccccCcccEEEeC
Confidence 665 1 12344455553221 1112579999987
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=67.64 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L- 242 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l- 242 (351)
...+...++...+++.||||.=||+.+..++...| .++|+++|++++..+.+.+..+.. |. ...+.++++++.+ +
T Consensus 62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-gv-~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-GV-DHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-cc-cceeeeeecchhhhHH
Confidence 34445555555577999999999998888887744 579999999999999998877765 33 5789999998754 2
Q ss_pred ----CCCCCceeeEEeccccccCCC-hHHHHHHHHhcccCCcEEEEEe
Q 018740 243 ----PFASSSIDAVHAGAAIHCWSS-PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ----p~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~~~LkpgG~li~~~ 285 (351)
....++||.++. .|+.+ -...++++.++||+||++++.-
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 134688999994 55432 3477899999999999999854
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=77.06 Aligned_cols=102 Identities=25% Similarity=0.422 Sum_probs=88.2
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 259 (351)
++|-+|||.-.+...+.+.|. ..++-+|+|+-.++....+.... .+...+...|+..+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 899999999999999988874 58999999999998888765433 6789999999999999999999999999998
Q ss_pred cCCCh----------HHHHHHHHhcccCCcEEEEEee
Q 018740 260 CWSSP----------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 260 h~~d~----------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++-.. ...+.++.|+|++||+++..+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 87422 2557899999999999888777
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=79.98 Aligned_cols=123 Identities=15% Similarity=0.043 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhC------------------------------------------
Q 018740 163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG------------------------------------------ 199 (351)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------ 199 (351)
+.++..++..... .++..++|.+||+|.++...+...
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4445555555443 457799999999999998876521
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC--CCceeeEEecccc-ccCCC---hHHHHHHHHh
Q 018740 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAI-HCWSS---PSTGVAEISR 273 (351)
Q Consensus 200 ~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl-~h~~d---~~~~l~~i~~ 273 (351)
...+++|+|+++.+++.|++++... |. ...+.+.++|+.+++.+ .++||+|+++--. +.+.+ ...+.+++.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~-g~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRA-GV-AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHc-CC-CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 0126999999999999999999887 33 34689999999887644 3579999998433 22222 2234344444
Q ss_pred cc---cCCcEEEEEeec
Q 018740 274 VL---RPGGVFVGTTYI 287 (351)
Q Consensus 274 ~L---kpgG~li~~~~~ 287 (351)
.| .+|+.+++.+..
T Consensus 333 ~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 333 RLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHhCCCCeEEEEeCC
Confidence 44 488888887764
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-05 Score=72.32 Aligned_cols=121 Identities=25% Similarity=0.274 Sum_probs=92.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.......+.+.++.+|||+.++.|.=+..+++...+ ..|+++|.++.-++..+++++.. +..++.....|...++
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~ 221 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLA 221 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEeccccccc
Confidence 345556788899999999999999988888887653 35799999999999999999887 3566788888876554
Q ss_pred ---CCCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 ---FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ---~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...+.||.|+.- +++..=|+ ...+|..+.+.|||||.|+.+|-...
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 222359999942 44432222 23789999999999999999887653
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=72.60 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=76.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++..|||||+|.|.++..+.+.+. +++++|+++.+.+..++++.. .++++++.+|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence 44567788888877889999999999999999999985 999999999999999987653 48999999999988
Q ss_pred CCCC---CceeeEEeccccccCCChHHHHHHHHh
Q 018740 243 PFAS---SSIDAVHAGAAIHCWSSPSTGVAEISR 273 (351)
Q Consensus 243 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~~ 273 (351)
.... .....|+++--. ++ -..++.++..
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~ 119 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLE 119 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHH
T ss_pred ccHHhhcCCceEEEEEecc-cc--hHHHHHHHhh
Confidence 7554 345566654332 22 2345555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-05 Score=70.57 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=100.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---h-CCCCCCCeEEEEecCCCC-CCCCCceeeE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---E-SNFPKENFLLVRADISRL-PFASSSIDAV 252 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~-~g~~~~~i~~~~~d~~~l-p~~~~~fD~V 252 (351)
..+||-+|.|.|..++.+.+.-...+++-+|++|.|++.+++.... + .....+++.++..|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999998874356999999999999999843221 1 123357899999998774 3334589999
Q ss_pred EeccccccCCCh----------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 253 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 253 ~~~~vl~h~~d~----------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+. .++|| ..+..-+++.|+++|.+++..-..- . . ...|+ .+..
T Consensus 370 IV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y--~--t---------------p~vfw---~i~a 422 (508)
T COG4262 370 IV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY--F--T---------------PRVFW---RIDA 422 (508)
T ss_pred EE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc--c--C---------------Cceee---eehh
Confidence 84 34555 2667788999999999998543210 0 0 11111 3556
Q ss_pred HHHHCCCeEEE----EEecCeEEEEEEecC
Q 018740 323 LCRACGLVDFK----CTRNRGFVMFTATKP 348 (351)
Q Consensus 323 ll~~aGf~~v~----~~~~g~~~~~~a~kp 348 (351)
-++++||.+.- +-++|.|-+..+.+.
T Consensus 423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred HHHhCcceeeeeEEecCcccccceeecccc
Confidence 77889997755 335677777666553
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=6e-05 Score=71.45 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 255 (351)
+.+|||+.||+|..+..++.+.+ ..+|+++|+++.+++.++++++.+ ...++.+++.|+..+- .....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998731 358999999999999999999876 1346889999987652 123579999874
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
- +..|..++..+.+.+++||++.++.-
T Consensus 122 P----fGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 122 P----FGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C----CCCcHHHHHHHHHhcccCCEEEEEec
Confidence 3 24667899999999999999999853
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-06 Score=68.34 Aligned_cols=123 Identities=16% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC--C
Q 018740 166 FELMKGYLKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L 242 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~--l 242 (351)
.-.++.......+.+|||+|.| +|..+..++...+...|...|-++..++-.++....+.-....++..+.-+... .
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 3344444444557799999999 477777778777888999999999999888775433210112222222222211 1
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
......||.|++...+-.-.--..+.+.|...|+|.|..++..|.+
T Consensus 98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 2234589999998876443334678899999999999988877654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-06 Score=72.22 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=63.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------C--C--C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------P--F--A 245 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p--~--~ 245 (351)
.+.++||+||++|.|+..+.+++ +..+|+|+|+.+.. ...++..+++|+.+. . + .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 44699999998750 135566666665332 1 1 1
Q ss_pred CCceeeEEeccccccCCC----h-------HHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.+|+|++-.+.....+ . ...+.-+...|+|||.+++-...
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999999774433222 1 24455556789999999987665
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=65.06 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHH----HHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~----~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
++.+....++.+|+|+-.|.|++++.+... ++...|+++=+.+... ...+.+.... .....|++.+-.+...++
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCcccccC
Confidence 455567788999999999999999999886 6666788776554311 1111111000 001345555555655555
Q ss_pred CCCCceeeEEeccccccC-------CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCC
Q 018740 244 FASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~-------~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
+.+..|+++....-|-+ ....++.+++++.|||||++++.+...+--..... ....++.+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~~~ri~ 185 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TITLHRID 185 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhhhcccC
Confidence 44557777754332222 23358899999999999999998877642211111 12446789
Q ss_pred HHHHHHHHHHCCCeEEE
Q 018740 317 EREIEDLCRACGLVDFK 333 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~ 333 (351)
...+.+..+.+||+..-
T Consensus 186 ~a~V~a~veaaGFkl~a 202 (238)
T COG4798 186 PAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hHHHHHHHHhhcceeee
Confidence 99999999999998654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.6e-06 Score=68.35 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=54.3
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCc-eeeEEec
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG 255 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~ 255 (351)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.++... |. ..+++++++|+.++. ..... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY-Gv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY-GV-ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT-T--GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999987 9999999999999999998876 32 568999999987642 22222 8999974
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=75.11 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=57.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.++++..++ .|||+-||.|.++..+++... +|+|+|+++.+++.|++++..+ +..|++|+.++++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccch
Confidence 4556777788887655 899999999999999999876 9999999999999999999987 358999998876543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=66.33 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC----CCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...+.|||||.|.++..|+..+|+..+.|++|-....++.++++...+ +....|+.+...+....- .+-|.---
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 347999999999999999999999999999999999999999887653 122566777776665421 12222222
Q ss_pred eccccccCCCh-------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 254 AGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 254 ~~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..-.+..++|| ...+.+..-+|++||.++..+-..
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 22233444554 266888899999999999876543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=65.85 Aligned_cols=111 Identities=15% Similarity=0.296 Sum_probs=86.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~ 244 (351)
+.+++.+. .++++||.||-|-|.....+.++-| .+-+.++..++.++..++..-.. ..++..+.+-.++. .+
T Consensus 92 ha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 92 HALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTL 165 (271)
T ss_pred HHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccc
Confidence 34444433 4688999999999998888887765 46678999999999998864444 57788887776553 25
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++.||.|+--..-+|..|...+.+.+.++|||+|++-.
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 688999999766557778888899999999999998855
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=65.85 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=102.8
Q ss_pred HHHHHHHHhccCC----CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh--hhC-----------
Q 018740 163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--QES----------- 225 (351)
Q Consensus 163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~----------- 225 (351)
...++.+..+.+. ...-+||--|||.|+++..++..|+ .+-|=++|--|+-...=.+. +.+
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 3445566655543 2345899999999999999999998 67777888777643332221 000
Q ss_pred ------------------------CCCCCCeEEEEecCCCC-C--CCCCceeeEEeccccccCCChHHHHHHHHhcccCC
Q 018740 226 ------------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278 (351)
Q Consensus 226 ------------------------g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg 278 (351)
+..........+|+.+. + -..+.||+|+.++.+..-.+....++.|..+||||
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 00011222233454332 1 12347999999988888788889999999999999
Q ss_pred cEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 279 GVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 279 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
|+.+=..|-.-+....... ......-++.+++..+.+..||++++..
T Consensus 290 GvWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 290 GVWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred cEEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 9988655543111110000 0112345688999999999999988743
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.9e-05 Score=68.72 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.++||+||++|.++..+.++|. .|++||..+ |...... .++|.....|......+.+.+|+++|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5688999999999999999999986 999999655 3322222 588999999987654336789999986
Q ss_pred cccccCCChHHHHHHHHhcccCC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPG 278 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~Lkpg 278 (351)
.+ ..|.+.++-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 56888888888888766
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=60.27 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
.+..+|+|+|||.|+++..++. . +..+|+|+|.++..++.+.++..........++.+..++....+. ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5677999999999999999998 4 567999999999999999988776511112456666666554321 45577
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++..++--.+. ..+|+...+ |+-.+++..|..
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEEcCCc
Confidence 777655533221 233444433 666666655543
|
|
| >COG2835 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.5e-06 Score=55.88 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=39.5
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++++||.|+++|.... +.+.+.|+.|+..|++.+|++.++.+.
T Consensus 4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence 4578999999999987764 346899999999999999999998753
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.7e-05 Score=67.93 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
......+.+.++..|||+.++.|.-+..+++... .+.+++.|+++.-++..++++... +..++.....|.... +
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPK 151 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeecccccccc
Confidence 3445567788899999999999998888888754 679999999999999999988876 357788887887665 1
Q ss_pred CCCCceeeEEec------cccccCCCh----------------HHHHHHHHhcc----cCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~~~L----kpgG~li~~~~~~ 288 (351)
.....||.|+.- +++..-++. .++|+.+.+.+ ||||+++.+|-..
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 223469999952 334433331 37799999999 9999999988653
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.2e-05 Score=63.07 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...-..-.+++|||+|+|+|..+...++.|. ..|+..|+.+......+-+++.+ ..++.+...|.-. .+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~ 140 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SP 140 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CC
Confidence 3444443445678999999999999999999884 58999999998888888887777 6788888888765 35
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCc-EEEEEeecc
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG-~li~~~~~~ 288 (351)
..||+|+...++..=+.-.+++. ..+.|+..| .+++-+|.+
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 67999999998765444456666 555555555 455555543
|
|
| >PRK11827 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=7e-06 Score=55.62 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
-+++++||.|+++|.... ..+.+.|..|+..|++++|++.++.+.
T Consensus 5 LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 5 LLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHH
Confidence 467899999999997653 236799999999999999999987653
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-06 Score=70.47 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=49.0
Q ss_pred CCeEEEEecCCCCCCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeecc
Q 018740 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+.+.+++-.....+|.+++.|+|.+.++++|+.-. ..++++.++.|||||+|-+..|..
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 34555555556678999999999999999999643 488999999999999999998865
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=57.12 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=95.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...++.+++. +.++.||||-.|++..++.+.++...+++.|+++..++.|.+++... +. .++++...+|....=-.
T Consensus 7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-~l-~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-NL-SERIDVRLGDGLAVLEL 82 (226)
T ss_pred HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-CC-cceEEEeccCCccccCc
Confidence 3456666655 44599999999999999999998889999999999999999998886 22 67788888887332123
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+..+|+|+..++=-. -....|++-.+.|+.=-.+++. | .-...+++++|.
T Consensus 83 ~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-P---------------------------n~~~~~LR~~L~ 132 (226)
T COG2384 83 EDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-P---------------------------NIHTYELREWLS 132 (226)
T ss_pred cCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-C---------------------------CCCHHHHHHHHH
Confidence 447999987654221 1234555555555533334431 1 114568999999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
..+|..+.
T Consensus 133 ~~~~~I~~ 140 (226)
T COG2384 133 ANSYEIKA 140 (226)
T ss_pred hCCceeee
Confidence 99998877
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.4e-05 Score=60.33 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=50.4
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
++||+|||.|.++..+++.++..+++++|+++.+.+.+++++..+ + ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-~--~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-N--LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-C--CCcEEEEEeeeeC
Confidence 489999999999999999988778999999999999999988765 2 3568888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=66.31 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
-+.+.+.+.+...+++.++|.=+|.|..+..+++..+.++|+|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFF 82 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHH
Confidence 3456677778778888999999999999999998865589999999999999999988765 568999999987753
Q ss_pred -----CCCCceeeEEeccc
Q 018740 244 -----FASSSIDAVHAGAA 257 (351)
Q Consensus 244 -----~~~~~fD~V~~~~v 257 (351)
....++|.|++.-.
T Consensus 83 ~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHhcCCCcccEEEEecc
Confidence 12357999997543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00038 Score=62.87 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCeEEEEcCccCHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFS-RIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~-~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
+.+|+=||||.=-++ ..+++. +....++++|+++.+++.+++.+....|. ..++.++.+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-SKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-cCCeEEEecchhccccccccCCEEEEh
Confidence 459999999975544 444443 45568999999999999999877622121 578999999998776555689999976
Q ss_pred cccccC-CChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCW-SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~-~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....-- .+..++|+.+.+.++||..+++-..
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 654422 3667999999999999999988633
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=68.78 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=65.1
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.+.+...+.+++....+..+||+-||||.++..+++... .|+|+++++++++.|+.++..+ +..|.+|+++-+++
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchhh
Confidence 344566777888888889999999999999999998865 9999999999999999998887 36899999996655
Q ss_pred C
Q 018740 242 L 242 (351)
Q Consensus 242 l 242 (351)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 3
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0037 Score=53.18 Aligned_cols=147 Identities=11% Similarity=0.090 Sum_probs=97.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCcee
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSID 250 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~fD 250 (351)
+..++.+||=+|..+|.....+++--....++++++|+.+.+..-..+... +|+--+..|+.... .--+..|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccccc
Confidence 466789999999999999999988755678999999998877666655543 78888888986532 1124588
Q ss_pred eEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 251 AVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+. .+..|. -+..++..-||+||.+++..-...-.....+ .. . -++-.+.|++.
T Consensus 148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-~~----v------------f~~ev~kL~~~ 205 (231)
T COG1889 148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-EE----V------------FKDEVEKLEEG 205 (231)
T ss_pred EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-HH----H------------HHHHHHHHHhc
Confidence 8874 344443 4577888999999977775543321100111 00 0 01233466778
Q ss_pred CCeEEEEEecCe----EEEEEEec
Q 018740 328 GLVDFKCTRNRG----FVMFTATK 347 (351)
Q Consensus 328 Gf~~v~~~~~g~----~~~~~a~k 347 (351)
||++++...... +.++.+++
T Consensus 206 ~f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred CceeeEEeccCCcccceEEEEEee
Confidence 999988665433 45555544
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.001 Score=58.15 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=94.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE-EEecCCCCCCC-
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPFA- 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~-~~~d~~~lp~~- 245 (351)
.+..+--..++..+||||+.||.|+..+.++|. ..|+++|..-+.+..--+. .+++.. ...++..+...
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHH
Confidence 333333344678999999999999999999974 5999999998777665543 455544 34555544311
Q ss_pred -CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh----ccCCccCCCHHHH
Q 018740 246 -SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREI 320 (351)
Q Consensus 246 -~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~l 320 (351)
.+..|++++--.+- ....+|-.+..+++|+|.++...- |.++.-+..... .....+..-...+
T Consensus 141 ~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvK---------PQFEagr~~v~kkGvv~d~~~~~~v~~~i 208 (245)
T COG1189 141 FTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVK---------PQFEAGREQVGKKGVVRDPKLHAEVLSKI 208 (245)
T ss_pred cccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEec---------chhhhhhhhcCcCceecCcchHHHHHHHH
Confidence 23678998866644 457789999999999998776321 222221111110 0011222245788
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++++..||++....
T Consensus 209 ~~~~~~~g~~~~gl~ 223 (245)
T COG1189 209 ENFAKELGFQVKGLI 223 (245)
T ss_pred HHHHhhcCcEEeeeE
Confidence 899999999987743
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00092 Score=57.94 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=93.2
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+...++.+||-+|.++|.....+++- ++.+.|+++++|+...+..-..++. .+|+--+..|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 34567899999999999999999886 5577999999999665555543333 489988999987532 11347
Q ss_pred eeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
+|+|++.-+ -++. .-++.++...||+||.+++..-.........+- . --.+-.+.|++.
T Consensus 144 VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~----------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 144 VDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-E----------------VFAEEVKKLKEE 203 (229)
T ss_dssp EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-H----------------HHHHHHHHHHCT
T ss_pred ccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-H----------------HHHHHHHHHHHc
Confidence 999996433 1333 356778888999999999875432100000010 0 002334566778
Q ss_pred CCeEEEEEecC----eEEEEEEec
Q 018740 328 GLVDFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 328 Gf~~v~~~~~g----~~~~~~a~k 347 (351)
||++++..... .+.++.++.
T Consensus 204 ~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 204 GFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp TCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred CCChheEeccCCCCCCcEEEEEEe
Confidence 99998876553 245555543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.8e-05 Score=64.67 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=70.1
Q ss_pred cHHHHHHHHhccCCC-CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
++.....++...... ....|+|.-||.|..+..++..++ .|+++|++|.-+.-|+.+++-. |+.. ++.|+++|+.
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI~~-rItFI~GD~l 153 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GVPD-RITFICGDFL 153 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cCCc-eeEEEechHH
Confidence 455555555544221 456899999999999999999998 9999999999999999998877 6644 9999999986
Q ss_pred CC----CCCCCceeeEEecc
Q 018740 241 RL----PFASSSIDAVHAGA 256 (351)
Q Consensus 241 ~l----p~~~~~fD~V~~~~ 256 (351)
++ .+....+|+|+.+.
T Consensus 154 d~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 154 DLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred HHHHHHhhhhheeeeeecCC
Confidence 54 44445567777653
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00072 Score=59.71 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+...++. ..+|+|||||.=-++..+....+...++|+|++..+++.....+... ..+.+....|+..-
T Consensus 93 d~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTS
T ss_pred HHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeecc
Confidence 3444444444333 67999999999998888887776779999999999999999988776 67888888898765
Q ss_pred CCCCCceeeEEeccccccCCChH-HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~-~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+ +....|+.+..=+++.+.... ..--++.+.+. .=.++++.|...- ..-...+.. + -...++
T Consensus 167 ~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL--------~gR~~gm~~---~----y~~~fe 229 (251)
T PF07091_consen 167 P-PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL--------GGRNKGMEQ---T----YSAWFE 229 (251)
T ss_dssp H-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------------TTHHH---C----HHHHHH
T ss_pred C-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc--------ccCcccccc---C----HHHHHH
Confidence 4 357799999998888775332 11122222221 2266667665431 111111111 1 135788
Q ss_pred HHHHHCCCeEEEE
Q 018740 322 DLCRACGLVDFKC 334 (351)
Q Consensus 322 ~ll~~aGf~~v~~ 334 (351)
.++..-|+.+-+.
T Consensus 230 ~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 230 ALAAERGWIVDRL 242 (251)
T ss_dssp HHCCTTCEEEEEE
T ss_pred HhcccCCceeeee
Confidence 8888888884443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=61.02 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=75.9
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecccc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
+.+.|+|.|+|.++...+.... +|++++.+|...+.|.+++... +..+++++.+|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHHhh
Confidence 5899999999999988888755 9999999999999999987554 25789999999999887 457999974321
Q ss_pred cc-CC-ChHHHHHHHHhcccCCcEEEE
Q 018740 259 HC-WS-SPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 259 ~h-~~-d~~~~l~~i~~~LkpgG~li~ 283 (351)
-- +. .....+..+...|+-++.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 11 223667777778888887763
|
|
| >PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function | Back alignment and domain information |
|---|
Probab=97.57 E-value=3e-05 Score=54.84 Aligned_cols=47 Identities=30% Similarity=0.568 Sum_probs=32.1
Q ss_pred cCCCceeCCCCCCCcccccCCC-------------------cccccccCCccccccccccccccCc
Q 018740 67 TSKNVLACPICYKPLTWIGDSS-------------------LSIESAAGSSLQCNTCKKTYSGVGT 113 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~-------------------~~~~~~~~~~~~C~~C~~~~~~~~g 113 (351)
..+++|+||.|+++|.+..-.. .-..++..+.+.|++|++.|++.+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 4578999999999881110000 0013477899999999999999876
|
The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=54.91 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PF 244 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~l--------p~ 244 (351)
..|+.+|||+||..|.++....++ +|.+-|.|+|+-.- .+.+++.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhC
Confidence 456899999999999999999887 48889999998431 01345666666 65442 14
Q ss_pred CCCceeeEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 ASSSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~~~~fD~V~~~~vl--------~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
++...|+|++-..- .|.... ..+|.-....++|+|.+++-.+..+
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 57789999975432 222111 1344445567889999999888654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.31 E-value=8.2e-05 Score=57.48 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=42.3
Q ss_pred EEEcCccCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEecc
Q 018740 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 256 (351)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~ 256 (351)
||||+..|..+..+++.... .+++++|+.+. .+..++.++.. + ...++.++.++..+. .++.+++|+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-G-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G-G-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-C-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887765332 26999999984 22222222211 1 145799999998643 22357899999754
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
. |..+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3 222334567889999999999998753
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0087 Score=56.76 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred CCeEEEEcCccCHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHhhhCC--------C--CCCC-
Q 018740 178 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQESN--------F--PKEN- 231 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~g--------~--~~~~- 231 (351)
..+|+|+|||+|.++..+.. + .|+.+|..-|.-.+-....-+.+..... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654432 1 1345777777653322222222211000 0 0011
Q ss_pred --eEEEEecCCCCCCCCCceeeEEeccccccCCC-hH-------------------------------------HHHHHH
Q 018740 232 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSS-PS-------------------------------------TGVAEI 271 (351)
Q Consensus 232 --i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-~~-------------------------------------~~l~~i 271 (351)
+..+.+.+..--||+++.+++++...+||+.. |. .+|+-=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223445444578999999999999999853 11 233334
Q ss_pred HhcccCCcEEEEEeeccCCCCCcc------hH---HHHHHHHH-----------hhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 272 SRVLRPGGVFVGTTYIVDGPFNLI------PF---SRLLRQNM-----------MQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~~~~~~~~------~~---~~~~~~~~-----------~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
++-|.|||.++++...+....... .+ +...+..+ ....-...+.+.+|+++..++.|.-.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 466889999999988764322110 01 11111111 11222445779999999999988755
Q ss_pred EE
Q 018740 332 FK 333 (351)
Q Consensus 332 v~ 333 (351)
++
T Consensus 304 I~ 305 (386)
T PLN02668 304 ID 305 (386)
T ss_pred ee
Confidence 55
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=53.63 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=46.6
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----CCCCCCceeeE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----LPFASSSIDAV 252 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----lp~~~~~fD~V 252 (351)
.-++||||+|....-..|..+..+++++|.|+++..++.|++++..+.+ ...+|.++...-.. +-..++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceeeEE
Confidence 3579999999875433332221245999999999999999999987622 36778887654221 22234689999
Q ss_pred EeccccccCC
Q 018740 253 HAGAAIHCWS 262 (351)
Q Consensus 253 ~~~~vl~h~~ 262 (351)
+|+--++.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9987776543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0029 Score=61.02 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
.-..|+|+..|.|.|+.+|.+.. |..+.+-+ +.+...-++ |+ +-...-=.+.++.-..+||+|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydR-----GL----IG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDR-----GL----IGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhc-----cc----chhccchhhccCCCCcchhhe
Confidence 34579999999999999998752 44444333 333333332 11 111111124455556899999
Q ss_pred EeccccccCC---ChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWS---SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~---d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.+++.+.. +...+|-|+-|+|+|||.+++.+.
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999987765 456889999999999999998543
|
; GO: 0008168 methyltransferase activity |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.053 Score=49.03 Aligned_cols=164 Identities=10% Similarity=-0.036 Sum_probs=96.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C----
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L---- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l---- 242 (351)
.+.+.+... ...|+.+|||-=.-...+.. .+...++=+|. |+.++.-++.+.+.......+..++.+|+.. +
T Consensus 73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence 344444432 34799999997555544422 22234444554 5566666666664311125678899999852 1
Q ss_pred ---CCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCC
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFL 315 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 315 (351)
.+..+.--++++-+++.+++.. ..+|+.+.+...||+.+++.....-................. ....-...+
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGI 229 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCC
Confidence 1223345588888899998754 478999998888999998876543100000001111111111 112233467
Q ss_pred CHHHHHHHHHHCCCeEEEE
Q 018740 316 SEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 316 s~~~l~~ll~~aGf~~v~~ 334 (351)
+.+++.++|+..||+....
T Consensus 230 ~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 230 DRADVAEWLAERGWRASEH 248 (260)
T ss_pred ChhhHHHHHHHCCCeeecC
Confidence 8999999999999998764
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.035 Score=52.09 Aligned_cols=154 Identities=21% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHHHHHHhhh----CCCCCCCeEEEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS--------G--------LFSLVVALDYSENMLKQCYEFVQQE----SNFPKENFLLVR 236 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~gvD~s~~~~~~a~~~~~~~----~g~~~~~i~~~~ 236 (351)
..-+|+|+||..|..+..+... . |..+|+--|+-.+-....-+.+... .....--+..+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3458999999999988766542 1 2347888886433222221111111 000011233455
Q ss_pred ecCCCCCCCCCceeeEEeccccccCCC-h--------------------------------------HHHHHHHHhcccC
Q 018740 237 ADISRLPFASSSIDAVHAGAAIHCWSS-P--------------------------------------STGVAEISRVLRP 277 (351)
Q Consensus 237 ~d~~~lp~~~~~fD~V~~~~vl~h~~d-~--------------------------------------~~~l~~i~~~Lkp 277 (351)
+.+..--+|+++.|++++..++||+.. | ..+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 677665678999999999999999842 0 1234444567889
Q ss_pred CcEEEEEeeccCCCCCc-------chHHHHHHHHHhh-----------ccCCccCCCHHHHHHHHHHCCCe
Q 018740 278 GGVFVGTTYIVDGPFNL-------IPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 278 gG~li~~~~~~~~~~~~-------~~~~~~~~~~~~~-----------~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
||++++.....+..... ...+...+..+.. ..-...+.+.+++++.+++.|--
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF 246 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSF 246 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCE
Confidence 99999999887652211 1122222222211 12234577899999999887753
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0018 Score=59.53 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=64.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+.+.+.+.+++.++|.--|.|..+..+.+..++++++|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence 45566777788889999999999999999999877789999999999999999887765 689999999988763
Q ss_pred ---C-CCCceeeEEec
Q 018740 244 ---F-ASSSIDAVHAG 255 (351)
Q Consensus 244 ---~-~~~~fD~V~~~ 255 (351)
. .-..+|.|++-
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 2 33578988864
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0048 Score=49.84 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=57.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEecccc------ccCCChH---HHHHHH
Q 018740 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAI------HCWSSPS---TGVAEI 271 (351)
Q Consensus 203 ~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl------~h~~d~~---~~l~~i 271 (351)
+|+|+|+-+++++..++++.+. +. ..++.++..+=+++. .+.+++|+++.+... ..+..+. .+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GL-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CC-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999887 22 357999988766654 223589999876432 1112233 778999
Q ss_pred HhcccCCcEEEEEeecc
Q 018740 272 SRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 272 ~~~LkpgG~li~~~~~~ 288 (351)
.++|+|||++.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999987753
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=55.38 Aligned_cols=112 Identities=23% Similarity=0.240 Sum_probs=82.5
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+.++++.+|||+.+..|.=+.+++.. ...+.|++.|.+.+-++..+.++... +..+......|...+| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCc-c
Confidence 46788999999999998765555543 22348999999999999999998887 2567777778877665 333 8
Q ss_pred eeeEE----ecc--ccccC------C----------ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVH----AGA--AIHCW------S----------SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~----~~~--vl~h~------~----------d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||-|+ |++ ++.-- . =..++|.....++++||+|+.+|-..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99999 344 33111 1 02477888899999999999988654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00038 Score=53.34 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred ceeeEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 248 SIDAVHAGAAIHCW----SS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 248 ~fD~V~~~~vl~h~----~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
.||+|+|..|.-++ .| ...+++.+++.|+|||.+++......++.............+.. .-+.++.+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~-----i~lrP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS-----IKLRPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc-----eEEChHHHH
Confidence 48999999886543 12 34889999999999999999876544332222222223333322 124556788
Q ss_pred HHHHH--CCCeEEEE
Q 018740 322 DLCRA--CGLVDFKC 334 (351)
Q Consensus 322 ~ll~~--aGf~~v~~ 334 (351)
..|.+ .||..++.
T Consensus 76 ~~L~~~evGF~~~e~ 90 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEE 90 (110)
T ss_dssp HHHTSTTT---EEEE
T ss_pred HHHHhcccceEEEEE
Confidence 87776 69988763
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0023 Score=55.10 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CC----
Q 018740 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FA---- 245 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~---- 245 (351)
+..|+|+|.-.|..+..++.. +...+|+|+|++........ .+.. ...++|+++++|..+.. ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h--p~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH--PMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc--cccCceEEEECCCCCHHHHHHHHHhhc
Confidence 469999999998877666542 35679999999643322111 1110 11379999999986542 11
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....+|+ -.+-|.-.+..+.|+....++++|+++++.+...
T Consensus 109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 12223333 3333444566788888999999999999976543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=46.93 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=80.4
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
...+..+.++.++...+.++.+|+|+|.|+...+.++.+ -...+|+++++-.+.+++-+.-.. |. .....|..-|+-
T Consensus 56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~-g~-~k~trf~Rkdlw 132 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA-GC-AKSTRFRRKDLW 132 (199)
T ss_pred ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH-hc-ccchhhhhhhhh
Confidence 345667778888888888899999999999999988887 237899999999999888765444 22 567788888887
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+..+.+ |..|+.+.+-.-++|.+ .++..-|..+..++..-
T Consensus 133 K~dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 133 KVDLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACR 172 (199)
T ss_pred hccccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEe
Confidence 766544 44444434322233333 34444555666665543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.01 Score=52.64 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=66.8
Q ss_pred HHHHhccCCCCCC--eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-----CC-CCCCeEEEEec
Q 018740 167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD 238 (351)
Q Consensus 167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----g~-~~~~i~~~~~d 238 (351)
+.+.+.++..++. +|||.-+|.|..+..++..|. +|+++|-++.+....++.+.... +. -..+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4566666666665 899999999999999999976 89999999999988888776620 00 01467888888
Q ss_pred CCCC-CCCCCceeeEEecccccc
Q 018740 239 ISRL-PFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 239 ~~~l-p~~~~~fD~V~~~~vl~h 260 (351)
..+. .-...+||+|++-=.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7543 212236899997555544
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.12 Score=45.61 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC-CCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~~fD~V~~ 254 (351)
.+++||-+|=.. ..+.+++..+...+|+.+|+++.+++..++.+.+. ..+++.+..|+.+ +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEEe
Confidence 478999999433 34455555566779999999999999999988887 4559999999966 442 2478999996
Q ss_pred ccccccCCChHHHHHHHHhcccCCc-EEEE
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGG-VFVG 283 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG-~li~ 283 (351)
.-. +-..-..-++......||..| ..++
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 211 111112366788888888766 4343
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.03 Score=55.39 Aligned_cols=129 Identities=20% Similarity=0.165 Sum_probs=92.0
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
+.++.|....+.+...+.+.+..+|.|..||+|.+.....+... ...++|.|+++.....|+.++--+ |... .+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~-~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEG-DA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCc-cc
Confidence 56788999999999999887778999999999998776665421 257899999999999999987766 3322 34
Q ss_pred EEEEecCCCCC-C----CCCceeeEEeccccc---cCC---------------------Ch-HHHHHHHHhcccCCcEEE
Q 018740 233 LLVRADISRLP-F----ASSSIDAVHAGAAIH---CWS---------------------SP-STGVAEISRVLRPGGVFV 282 (351)
Q Consensus 233 ~~~~~d~~~lp-~----~~~~fD~V~~~~vl~---h~~---------------------d~-~~~l~~i~~~LkpgG~li 282 (351)
....+|-..-| . ..+.||.|+++--+. +.. .. ..+++.+...|+|||...
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 44555443333 2 336799998763221 110 01 477999999999999777
Q ss_pred EEeec
Q 018740 283 GTTYI 287 (351)
Q Consensus 283 ~~~~~ 287 (351)
+..+.
T Consensus 324 ivl~~ 328 (489)
T COG0286 324 IVLPD 328 (489)
T ss_pred EEecC
Confidence 66654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.02 Score=51.89 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
-+.+.+.+.|.+.+++..+|.--|.|..+..+.+.++ ..+++|+|-++.+++.|++++... .+++.++...+.++
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l 85 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANL 85 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHH
Confidence 3456677888888899999999999999999999875 346999999999999999998886 68999999988765
Q ss_pred C-----CCCCceeeEEec
Q 018740 243 P-----FASSSIDAVHAG 255 (351)
Q Consensus 243 p-----~~~~~fD~V~~~ 255 (351)
. ..-+.+|.|+.-
T Consensus 86 ~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 86 AEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHhcCCCceeEEEEe
Confidence 3 223578888754
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.01 Score=54.72 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=73.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC----CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI----SR 241 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~----~~ 241 (351)
+.+......-...+|||+|.|.|..+.++..-.|. ..++.++.|+..-+......... ......+...|+ ..
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~ 179 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLS 179 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccC
Confidence 33444445555678999999999988777776652 35778888887666555432221 122222222232 23
Q ss_pred CCCCCCceeeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|. ...|++|+..+-|-|...+ ...++.+..++.|||.+++.++..
T Consensus 180 lp~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 180 LPA-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred CCc-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 332 3456776666555554433 257888999999999999988764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.035 Score=51.73 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec-CCCCCCCCCceee
Q 018740 174 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSIDA 251 (351)
Q Consensus 174 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d-~~~lp~~~~~fD~ 251 (351)
...++.+|+=+|+| -|.++..+++.. ..+|+++|.|++-.+.|++.- .-.++... ......-.+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhCcE
Confidence 45678899999987 356777778753 259999999999999998852 22233322 2222211234999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+..-. ...+....+.|++||.+++.-...
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 985443 445788889999999999977653
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0098 Score=51.58 Aligned_cols=97 Identities=23% Similarity=0.380 Sum_probs=70.3
Q ss_pred CeEEEEcCccCHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 179 GNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
.+++|+....|.++..+.++.. ...++++|+-+-+ +.+.+.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHHH
Confidence 5899999999999999987621 1139999985521 2578888999997652
Q ss_pred --CCCCceeeEEeccc-----cccCCCh------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 --FASSSIDAVHAGAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 --~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
|..+..|+|+|-++ +|.+.+- ..+|.-...+|+|||.|+.-.+..+
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 55678999999765 3444321 2556677789999999987655443
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.066 Score=46.20 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=68.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhC------------------
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES------------------ 225 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~------------------ 225 (351)
+++...++....+-++.|-.||.|+++-.+.-.. .-..|+|.|+++.+++.|++++...+
T Consensus 40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~ 119 (246)
T PF11599_consen 40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY 119 (246)
T ss_dssp HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence 4444555555556799999999999887665432 12489999999999999999874322
Q ss_pred ---------------------CCCCCCeEEEEecCCCCC-----CCCCceeeEEecccc---ccCCC-----h-HHHHHH
Q 018740 226 ---------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAI---HCWSS-----P-STGVAE 270 (351)
Q Consensus 226 ---------------------g~~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl---~h~~d-----~-~~~l~~ 270 (351)
..........++|+.+.. ......|+|+.---. -+|.. | .++|..
T Consensus 120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~ 199 (246)
T PF11599_consen 120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS 199 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence 112445778888887621 112336999864322 33333 2 388999
Q ss_pred HHhcccCCcEEEE
Q 018740 271 ISRVLRPGGVFVG 283 (351)
Q Consensus 271 i~~~LkpgG~li~ 283 (351)
++.+|.+++++.+
T Consensus 200 l~~vLp~~sVV~v 212 (246)
T PF11599_consen 200 LAPVLPERSVVAV 212 (246)
T ss_dssp HHCCS-TT-EEEE
T ss_pred HHhhCCCCcEEEE
Confidence 9999955566655
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.07 Score=47.50 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=69.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---hCCCCCCCeEEEEecCCCC---CCCCCc-e
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL---PFASSS-I 249 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~g~~~~~i~~~~~d~~~l---p~~~~~-f 249 (351)
....||++|+|+|.-+..++... ..+|+-.|+..-. ...+.+... .-+..+..+.....+-... .+.... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35579999999997777666643 3488888875432 222222111 1000112333333333222 122233 9
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
|+|++..++.+-..+..++.-++..|..+|.+++.++-.+
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999988889999999999999997777776543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.028 Score=50.76 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=80.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCC--CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL--PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 253 (351)
..+.+|-||.|.|...+...+.-...++.-+|++...++..++.+... .|...+++.+..+|-..+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 467999999999999998888744558899999999999999887653 355578899999986443 13368899999
Q ss_pred eccccccCCCh---------HHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d~---------~~~l~~i~~~LkpgG~li~~~ 285 (351)
.-. .|| ...+.-+.+.||+||++....
T Consensus 201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 532 232 356788999999999998865
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.24 Score=46.91 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-C-----CCCCC-C
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-R-----LPFAS-S 247 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~-----lp~~~-~ 247 (351)
.++.+|+=+|||. |.++..+++.....+|+.+|.++.-++.|++.... ..+..... . ..... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCC
Confidence 3345999999998 98888888876567999999999999999985322 11111111 0 01112 3
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+|+++-.-. -..++..+.+.++|||.+.+......
T Consensus 238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 6999984333 23468899999999999988766543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.045 Score=52.17 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 255 (351)
+.+|||.=+|+|.=+..++.. ....+|+.-|+|+++++..+++++.+ +.....+++...|+..+- .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDVID-- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCEEE--
Confidence 458999999999977777766 33458999999999999999998877 432335888888886542 2467899997
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|.-+..|..+|..+.+.++.||.|.++.-.
T Consensus 127 --lDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 --LDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --E--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred --eCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 355567889999999999999999997654
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.13 Score=50.89 Aligned_cols=101 Identities=23% Similarity=0.256 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----------C
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L 242 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----------l 242 (351)
..++.+|+=+|+|. |..+...++.. +..|+++|.+++.++.+++. ..+++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 34688999999997 77777777663 34899999999999988873 22222221111 0
Q ss_pred C----------CCC--CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 P----------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
. +.+ ..+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589999776654444565556999999999999887654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=49.93 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHhh
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
..+|+|+|+|+|.++..+.+... ..+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46999999999999988877522 35899999999999888888765
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.13 Score=47.96 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=80.0
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
.|+..++.+|||+....|.=+..+.+.... ..|++=|.++.-+...+..+... ..+++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence 356678999999999999988888776542 27999999988777777666433 2455555555554433
Q ss_pred -----CCCCceeeEEec------cccccCCC-----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 -----FASSSIDAVHAG------AAIHCWSS-----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 -----~~~~~fD~V~~~------~vl~h~~d-----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.....||-|++- .++.+-++ ...+|.+-.++||+||.++.+|-...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 123469999863 22333222 12678889999999999999887653
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.015 Score=44.46 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (351)
.+....+|||||+|.+...|...|. .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 3456799999999999999999988 77899973
|
; GO: 0008168 methyltransferase activity |
| >PF13719 zinc_ribbon_5: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0053 Score=37.60 Aligned_cols=35 Identities=26% Similarity=0.733 Sum_probs=24.2
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.|+..+...... + ......++|+.|++.+.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l---~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-L---PAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-c---ccCCcEEECCCCCcEee
Confidence 57899999977655411 0 02346899999998764
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.041 Score=48.49 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHhccCCCCC--CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC------CCeEEEEecC
Q 018740 168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRADI 239 (351)
Q Consensus 168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~------~~i~~~~~d~ 239 (351)
.+.+..+..++ .+|||.-+|-|.-+..++..|. +|+++|-||-+....++-+........ .+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 45555554444 4899999999999999888776 999999999776665543332210011 3799999998
Q ss_pred CC-CCCCCCceeeEEecccccc
Q 018740 240 SR-LPFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 240 ~~-lp~~~~~fD~V~~~~vl~h 260 (351)
.+ ++.++.+||+|.+--.+.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 76 4555789999998666554
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.012 Score=48.38 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhhCCCCCCCeE-EEEecCC-CCCCCCCceeeEEe
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQESNFPKENFL-LVRADIS-RLPFASSSIDAVHA 254 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~g~~~~~i~-~~~~d~~-~lp~~~~~fD~V~~ 254 (351)
+++.+-+|+..-..=....+.| ..++.-+|.++--++ ..++ ++. +...|+. +..--.++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~d-----------r~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRD-----------RLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccccc-----------ccccccHHHHHHHHHHhhccchhhhe
Confidence 4577788887655544444555 347888887642111 1111 111 1112221 11112467999999
Q ss_pred ccccccCC-----Ch------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 255 GAAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 255 ~~vl~h~~-----d~------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
..++||+. || .+.+.++.++|||||.+++..|...
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 99999982 33 3778899999999999999999864
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.23 Score=46.44 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEecc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 256 (351)
..+|||.=+|+|.=+..++...+..+|+.-|+||.+++.+++++..+ ...+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence 56999999999998888777765558999999999999999998876 234555666676544221 36688875
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+.-+..|..++..+.+.++.||++-++.-...
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 35556788999999999999999988765543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.21 Score=47.76 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-----C-CC-
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----L-PF- 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-----l-p~- 244 (351)
....++.+||.+|+|. |..+..+++.....+++++|.++...+.+++.. ....+...-.+ + .+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence 3455678999999987 888888888753336999999999988888741 11222111110 1 11
Q ss_pred CCCceeeEEeccc-----------cccC----CChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+|+|+-.-. +.|. .++...+.++.+.|+++|.++....
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2236898886421 1222 4566788999999999999988653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.067 Score=49.03 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
|..+.+.+..... .+++.|||-=+|+|..+.+..+.+. +.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 4666677666554 3588999999999999999998887 999999999999999999754
|
|
| >PRK00420 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.011 Score=45.78 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.||.||.+|.... .+..+|+.||..+...
T Consensus 24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence 56999999987622 3789999999877654
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.1 Score=50.85 Aligned_cols=102 Identities=11% Similarity=0.172 Sum_probs=75.9
Q ss_pred CeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHH-HhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 179 GNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
.+|+-+|.|.|-+.....+. ....+++++|-+|+++...+.+ ...+ ..++.++..|+..++.+..+.|+++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccchH
Confidence 46899999999887665543 2345889999999998877663 3333 5789999999999986668899988
Q ss_pred eccccccCCCh---HHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSSP---STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~ 285 (351)
+ ..|..+.|- ...|..+-+.|||+|+.|=..
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 5 333444332 366899999999999876543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.17 Score=39.95 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=40.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.+++|+|||.+-|..+..++-+|. ..|+++++++...+..++..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 467999999999999999998884 58999999999999998866543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=53.36 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=75.0
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHhhh----CCC
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQE----SNF 227 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~-----------~~~~~~----~g~ 227 (351)
.-+|+|+|=|+|.+.....+.. + ..+++++|..| ..+..+. +..+.. .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999665554322 2 24788999643 2222222 111111 010
Q ss_pred -------CCCCeEEEEecCCC-CCCCCCceeeEEecc-ccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 228 -------PKENFLLVRADISR-LPFASSSIDAVHAGA-AIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 228 -------~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~-vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
..-.+++..+|+.+ ++--...+|+++.-. .-.+-|+. ..+++.++++++|||.+.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t----------- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT----------- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence 01245566777754 232235699998643 22222222 488999999999999887321
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+...++.-|.++||.+.+.
T Consensus 207 -------------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 -------------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -------------------hHHHHHHHHHHcCCeeeec
Confidence 3346778888888887653
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.11 Score=45.84 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-|..+.+.+..... .++..|||-=||+|..+.+..+.+. +.+|+|+++...+.+.+++...
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 345666666665544 3588999999999999999988877 9999999999999999988664
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.078 Score=46.32 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (351)
.-|..+++.+..... .++..|||.=||+|..+.+..+.+. +.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 345667777776654 3588999999999999999999887 99999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.17 Score=44.52 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+...++.+||-+|.++|.......+- +|+.-|++++.|+..=+..-..++. ..||--+.-|+.... ..-+-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 34567999999999999988888876 7888999999997544333332222 367777777875431 11234
Q ss_pred eeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~ 286 (351)
.|+|++ .++.|+ .+.-+..-.||+||.++++.-
T Consensus 227 VDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 227 VDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 666664 333343 334567788999999988654
|
|
| >PF13717 zinc_ribbon_4: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.017 Score=35.06 Aligned_cols=34 Identities=18% Similarity=0.681 Sum_probs=22.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.+.||.|+..+...+.. + . .....++|++|++.+
T Consensus 2 ~i~Cp~C~~~y~i~d~~-i--p-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK-I--P-PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH-C--C-CCCcEEECCCCCCEe
Confidence 57899999976655411 0 0 223468999999875
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.58 Score=43.13 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=99.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
+.+...+... ...|+-+|||-=. +...-..+ ...|+-+|. |+.++.=++.+++..+.......++..|+.+-.
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLDT--RayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLDT--RAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHhc-ccEEEEecccccc--ceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 3445555554 5689999998533 33322223 345666665 677777667777663333347999999997422
Q ss_pred -------CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCC-CcchHHHHHHH-H-Hh-hccC
Q 018740 244 -------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQ-N-MM-QISG 310 (351)
Q Consensus 244 -------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~-~-~~-~~~~ 310 (351)
+..+.--++++-+++.+++.. .++|..|...+.||-.++.......... ........... . .. ....
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 238 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL 238 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence 234455688889999999754 4889999999999888887764211110 11000000000 0 00 0112
Q ss_pred CccCCCHHHHHHHHHHCCCeEEEE
Q 018740 311 SYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
.+...+..+++.++.+.||.....
T Consensus 239 ~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 239 VYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eeccCCHHHHHHHHHhcCEEEEec
Confidence 344567899999999999987765
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.075 Score=51.01 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=69.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH--hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cC--CCCCCC-CC
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAK--SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI--SRLPFA-SS 247 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~--~~lp~~-~~ 247 (351)
.......++|+|.|.|.-..++.. ..-...++.||.|..|.......+..... .... ++.. -+ ..+|.. .+
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~-~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEP-IVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCch-hccccchhcccCCCCccc
Confidence 334456889999887654333332 23234789999999999998877654100 1111 1111 11 223433 45
Q ss_pred ceeeEEeccccccCCChH---HHHHHHH-hcccCCcEEEEEeecc
Q 018740 248 SIDAVHAGAAIHCWSSPS---TGVAEIS-RVLRPGGVFVGTTYIV 288 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~---~~l~~i~-~~LkpgG~li~~~~~~ 288 (351)
.||+|++.+.++++.++. ...+++. +..++|+.+++.....
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 599999999999998764 3344444 4667888888877653
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.3 Score=45.87 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCCCCCCCCceeeE
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~lp~~~~~fD~V 252 (351)
..++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++. | ... +.....++.++....+.+|+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-----G--a~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-----G--ADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-----C--CcEEecCCcccHHHHhccCCCCCEE
Confidence 33578899899874 66777777664223689999999988888763 1 111 111111122211112358888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+- ....+ ..++...+.|++||.+++...
T Consensus 240 id-----~~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 FE-----VSGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EE-----CCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 73 33333 357788899999999988654
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.24 Score=42.01 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-------C
Q 018740 176 VLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------F 244 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------~ 244 (351)
..+..|+|+|.-.|..+..++. .|...+|+++|++-..+.-+... .+++.|++++-.+.. .
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHHH
Confidence 3456999999998876666554 35456999999987654433322 589999999976642 1
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
..+.--+.++...-||.....+.|+-..++|.-|-++++.+.+.++.
T Consensus 140 ~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 140 KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 22323344455565665555677788889999999999988877654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.19 Score=43.92 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHhccCC------CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe
Q 018740 159 FPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (351)
Q Consensus 159 ~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i 232 (351)
.++....+..+.++|.. .+.-++||||.|.--.-..+--+-..++.+|.|+++..++.|+..+..+.+. ...+
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-~~~I 132 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-ERAI 132 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-hhhe
Confidence 34445555566665532 2345789999876433222222222349999999999999999988776222 2334
Q ss_pred EEEEecC-CC----CCCCCCceeeEEecccccc
Q 018740 233 LLVRADI-SR----LPFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 233 ~~~~~d~-~~----lp~~~~~fD~V~~~~vl~h 260 (351)
++....- .. +--.++.||+++|+--+|-
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcch
Confidence 4443322 11 1123678999999987764
|
|
| >PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.02 Score=34.19 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=16.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
-||.||+++..... +......+.|+.|+...
T Consensus 2 fC~~CG~~l~~~ip-----~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 2 FCPQCGGPLERRIP-----EGDDRERLVCPACGFIH 32 (34)
T ss_dssp B-TTT--B-EEE-------TT-SS-EEEETTTTEEE
T ss_pred ccccccChhhhhcC-----CCCCccceECCCCCCEE
Confidence 39999999876542 11234678899998653
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.3 Score=39.22 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCCCc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSS 248 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~~ 248 (351)
.+...+|+|+|+-.-++.+.+. +...+++.+|+|...++...+.+... .....+.-+++|.+. +| ..++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CCCe
Confidence 4668999999998877666654 33468999999999888776655554 123345556677642 33 2222
Q ss_pred eeeEEeccccccCC-C-hHHHHHHHHhcccCCcEEEEEe
Q 018740 249 IDAVHAGAAIHCWS-S-PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 249 fD~V~~~~vl~h~~-d-~~~~l~~i~~~LkpgG~li~~~ 285 (351)
==.++....|-.+. + -..+|..+...|+||-.+++-+
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22333445566553 2 3488999999999999988855
|
|
| >COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.024 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
..||.||.||+... +.+.|+.|++.
T Consensus 29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~ 53 (131)
T COG1645 29 KHCPKCGTPLFRKD-----------GEVFCPVCGYR 53 (131)
T ss_pred hhCcccCCcceeeC-----------CeEECCCCCce
Confidence 56999999998854 89999999953
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.46 Score=43.72 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC------CC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL------PF 244 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l------p~ 244 (351)
...++.+||-+|+|. |..+...++..--.+|+.+|+++.-++.|++. .. ..+....... ..+ -.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga------~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GA------TVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CC------eEEeeccccccHHHHHHHHHhhc
Confidence 445688999999997 88888788875567999999999999999983 21 1121111111 110 12
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
....+|+.+-+..++ ..++.....+++||.+++..+..+
T Consensus 239 g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 234588888665544 346667789999999888776543
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.084 Score=41.94 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=56.3
Q ss_pred CCeEEEEecCCC-CCCCCCceeeEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH
Q 018740 230 ENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN 304 (351)
Q Consensus 230 ~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
..+.+..+|+.+ ++--...+|+|+... +---.+| ..++++++++++|||.+.- +.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~T--ys----------------- 90 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLAT--YS----------------- 90 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S------------------
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEE--ee-----------------
Confidence 456777788754 332237799999653 2222344 4889999999999997764 21
Q ss_pred HhhccCCccCCCHHHHHHHHHHCCCeEEEEEec-CeEEEEEEecC
Q 018740 305 MMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKP 348 (351)
Q Consensus 305 ~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp 348 (351)
+...++..|.++||.+.+.... +..-+..|.||
T Consensus 91 -----------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 -----------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp ------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred -----------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 2346889999999998875543 46677777775
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.07 Score=48.05 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHhhhCCCCCCCeEEEEecCCCCCC-CCC-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQQESNFPKENFLLVRADISRLPF-ASS- 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~~~g~~~~~i~~~~~d~~~lp~-~~~- 247 (351)
.+++|||+|||.|.-...+...+. ..++..|++...++.-.- .+....+....-......++.+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 478999999999998888777762 478888888776632110 0000000000111111121111111 123
Q ss_pred -ceeeEEeccccccCCChHHH-HHHHHhcccCCcEEEEE
Q 018740 248 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT 284 (351)
Q Consensus 248 -~fD~V~~~~vl~h~~d~~~~-l~~i~~~LkpgG~li~~ 284 (351)
.||+|.++..+.-....... +......++++|+++..
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 78999998888776655555 55666788889987763
|
|
| >PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.036 Score=35.16 Aligned_cols=29 Identities=21% Similarity=0.491 Sum_probs=19.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
+.||.|++...... ...+.+.|+.||.+.
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence 47999999753222 345788999998664
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.16 Score=48.37 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=53.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~ 254 (351)
..|||||.|||.++....+.|. ..|++++.-..|.+.|++....+ |. .++|.++.---.++... ....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn-g~-SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN-GM-SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC-CC-ccceeeeccccceeeecCcchhhhhhH
Confidence 3689999999999999999984 47999999999999999887765 33 67788776554443211 223555543
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.23 Score=45.31 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=52.2
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC--CCceeeEEeccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA 257 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v 257 (351)
+++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+. +.. .+.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~--------~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANF--------PNK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhC--------CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999998874 36789999999998888763 222 566787776432 356999997643
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.033 Score=34.22 Aligned_cols=35 Identities=23% Similarity=0.675 Sum_probs=22.4
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.||.|+..+...... . . .....++|++|+..+.
T Consensus 2 ~~~CP~C~~~~~v~~~~-~--~-~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ-L--G-ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH-c--C-CCCCEEECCCCCCEEE
Confidence 47899999976554311 0 0 1123689999998653
|
This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.35 Score=47.81 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-------------
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------------- 241 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~------------- 241 (351)
.++.++|=+|+|. |..+..+++.. +..|+.+|.++..++.+++. ..+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 3568999999997 66666666552 34899999999988877752 12222222211
Q ss_pred ----------CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 242 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 242 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++-.-..+|+|+..-.+.--+.|.-..+++.+.+|||++++-.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111246999988776666566766788899999999987643
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.12 Score=47.65 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+......+|+.|+|-=-|||.++...+..|. -|+|.||+-.+++.. +.++++. |....-+.++.+|..+.
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDVLTADFSNP 277 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhheeeecccCc
Confidence 3444567799999999999999998888876 999999999888732 3455554 32234577889999888
Q ss_pred CCCC-CceeeEEec
Q 018740 243 PFAS-SSIDAVHAG 255 (351)
Q Consensus 243 p~~~-~~fD~V~~~ 255 (351)
|+.. ..||.|+|-
T Consensus 278 ~~rsn~~fDaIvcD 291 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCD 291 (421)
T ss_pred chhhcceeeEEEeC
Confidence 7654 579999973
|
|
| >PRK09678 DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.072 Score=37.76 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=34.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccc--cccccccccCceeeecccC
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 121 (351)
++.||.||..-........+.. ......+|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 4789999997644432223222 556677898 8999999887777776543
|
|
| >COG3809 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.048 Score=38.58 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=26.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCce
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
++.||+|+-.+....+..+ .+-.|+.|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 3679999998876654322 455799999888776433
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.3 Score=45.70 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=64.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhhCCCCCCCeEEEEecC---CCCCCCCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-FVQQESNFPKENFLLVRADI---SRLPFASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~g~~~~~i~~~~~d~---~~lp~~~~~fD~V~~ 254 (351)
..+--.|.||=.....+.+.+|+.+++-+|-+...-+.+-+ .+... ......++.+.= ....|++=..=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 36888888998999999999999999999987655333222 22222 122334444431 223444444445566
Q ss_pred ccccccCCChH---HHHHHHHhcc---c---CCcEEEEEeeccCCC
Q 018740 255 GAAIHCWSSPS---TGVAEISRVL---R---PGGVFVGTTYIVDGP 291 (351)
Q Consensus 255 ~~vl~h~~d~~---~~l~~i~~~L---k---pgG~li~~~~~~~~~ 291 (351)
.+..-+.+|.. ++++-+..+. . ..|.+++.|...+.+
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 66666677753 3333333332 1 346677788876643
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.29 Score=44.93 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=72.4
Q ss_pred CeEEEEcCccCHHHHHHHHhC--------------------CCCeEEEEeCCHH--HHHHHHHHHhhh------------
Q 018740 179 GNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSEN--MLKQCYEFVQQE------------ 224 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~~--~~~~a~~~~~~~------------ 224 (351)
.+||-||.|.|.=..+++... +...++.+|+.+- .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987554444332 1148999999863 333333332221
Q ss_pred --CCCCCCCeEEEEecCCCCCCCC-------CceeeEEecccccc-----CCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 225 --SNFPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 225 --~g~~~~~i~~~~~d~~~lp~~~-------~~fD~V~~~~vl~h-----~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....-++.|.+.|+..+..++ ...|+|+..+.+.- ++.-.++|..+...++||..|++.+...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0111346888999987765322 35788888877643 3445699999999999999998877544
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.92 Score=42.57 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
..++.+||=+|+|. |.++..+++. ....+|+++|.++.-++.+++ +. .. ... .++. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~---~~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLI---DDIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eeh---hhhh-hccCCcEE
Confidence 35688999999875 6666666654 223489999999887777764 11 11 111 1111 11248888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+-.-.- ..-...+....+.|++||.+++...
T Consensus 227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 732210 0123468888999999999987653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PHA00626 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.064 Score=35.42 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=21.6
Q ss_pred eeCCCCCCC-cccccCCCcccccccCCccccccccccccc
Q 018740 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 72 l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+.||.||+. ....+. -....+.+.|+.|+..|..
T Consensus 1 m~CP~CGS~~Ivrcg~-----cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT-----MRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCCceeeeece-----ecccCcceEcCCCCCeech
Confidence 369999995 332220 0012578999999987753
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.23 Score=43.87 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=31.9
Q ss_pred EEEEecCCCC--CCCCCceeeEEeccc----ccc-CC----------ChHHHHHHHHhcccCCcEEEE
Q 018740 233 LLVRADISRL--PFASSSIDAVHAGAA----IHC-WS----------SPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 233 ~~~~~d~~~l--p~~~~~fD~V~~~~v----l~h-~~----------d~~~~l~~i~~~LkpgG~li~ 283 (351)
+++.+|..++ .++++++|+|+..-- ..+ .. -....+.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3556666443 456777887776411 010 00 023678999999999998876
|
|
| >TIGR01206 lysW lysine biosynthesis protein LysW | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.075 Score=35.39 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.+.||.|+..+..... .....+.|+.||..+-.
T Consensus 2 ~~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENP-------ELGELVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence 4689999998766541 12457899999987654
|
This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway. |
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.086 Score=29.44 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999986543 4578999998764
|
Several members are annotated as putative helicases. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.69 Score=36.47 Aligned_cols=86 Identities=27% Similarity=0.308 Sum_probs=58.1
Q ss_pred ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CCCCceeeEEecccccc
Q 018740 187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 187 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h 260 (351)
|.|.++..+++... .+|+++|.++.-++.+++. .--.++..+-.++ . .....+|+|+- .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid-----~ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVID-----C 65 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEE-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEE-----e
Confidence 45777888887753 7999999999999888873 1111222222211 1 22357999984 3
Q ss_pred CCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 261 WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 261 ~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
... ...++....+|+++|.+++.....
T Consensus 66 ~g~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 66 VGS-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cCc-HHHHHHHHHHhccCCEEEEEEccC
Confidence 333 457899999999999999977664
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.083 Score=38.40 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=23.8
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+...||.|+.+- ..- +..++..|..|+..+..
T Consensus 34 ~~~~Cp~C~~~~-VkR--------~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRTT-VKR--------IATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCcc-eee--------eccCeEEcCCCCCeecc
Confidence 457899999973 222 45689999999987753
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.5 Score=39.07 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------CCCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p~~~ 246 (351)
...++.+||..|+|. |..+..+++.. +.+|++++.++...+.+++. | +..+..+-... ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-----g-----~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-----G-----ADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-----C-----CCEEEcCCCcCHHHHHHHhcC
Confidence 345577888888763 77777777764 34899999999888877652 1 11111111110 1234
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+.+.. ....++++.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 56898884321 13468889999999999987644
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.04 E-value=3.2 Score=36.75 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CCCCCce
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFASSSI 249 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~~~~~f 249 (351)
.++.+||..|+|. |.....+++.. +.++++++.++...+.+++. | .. .++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~-----g--~~--~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL-----G--AD--HVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-----C--Cc--eeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999985 66666666653 35999999998877777543 1 01 1111110010 1123569
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|+|+.... .. ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 99985322 21 4567788899999998876544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.12 Score=33.15 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=22.6
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..+.||.||..+..... ....+|+.||....
T Consensus 2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRIL 32 (46)
T ss_pred CEEECCCCCCEEEECCC---------CCceECCCCCCeEE
Confidence 35889999998766541 12789999997543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=41.50 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
..++.+||=+|+|. |.++..+++.. ..+|++++. ++.-.+.+++. | ...+.....+..+.. ..+.+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-----G--a~~v~~~~~~~~~~~-~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-----G--ATYVNSSKTPVAEVK-LVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-----C--CEEecCCccchhhhh-hcCCCC
Confidence 34577999999875 77777776664 348999986 56666666542 1 111111011111101 124588
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+-. ...+ ..+.+..+.|+++|.+++...
T Consensus 241 ~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEA-----TGVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEEC-----cCCH-HHHHHHHHHccCCcEEEEEec
Confidence 88843 2222 367888999999999877544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.81 Score=42.85 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GL----FSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
....++|+|.|+|.+...+.+. .| ..++.-+|+|++..+.-++.++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3458999999999998877664 22 568999999999988888877664
|
|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.094 Score=34.72 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=21.0
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
-.|+.|+.++...+ ..+.|+.|+..|-
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCccc
Confidence 46999999886554 6889999987664
|
|
| >KOG1088 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.078 Score=40.68 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=24.0
Q ss_pred ccCCccccccccccccccCceeeeccc
Q 018740 94 AAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (351)
Q Consensus 94 ~~~~~~~C~~C~~~~~~~~g~~~~~~~ 120 (351)
+..+.+.|+.||+.|++.+|+++.+-.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 567899999999999999999998653
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.55 E-value=3.2 Score=34.73 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=77.1
Q ss_pred EcCccCHHHHHHHHhCC-CCeEEEEeC--CHHHHHHHH---HHHhhhCCCCCCCeE-EEEecCCCCC----CCCCceeeE
Q 018740 184 ASCGSGLFSRIFAKSGL-FSLVVALDY--SENMLKQCY---EFVQQESNFPKENFL-LVRADISRLP----FASSSIDAV 252 (351)
Q Consensus 184 iGcG~G~~~~~l~~~~~-~~~v~gvD~--s~~~~~~a~---~~~~~~~g~~~~~i~-~~~~d~~~lp----~~~~~fD~V 252 (351)
||=|.=.++..|++... ...+++.-. ..+..+... +++...+ ..++. ....|+.++. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 55556667777777744 456665444 333333222 2222221 12222 2445666653 356889999
Q ss_pred Eecccccc--CCC-----------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHH
Q 018740 253 HAGAAIHC--WSS-----------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 319 (351)
Q Consensus 253 ~~~~vl~h--~~d-----------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 319 (351)
+.++-.-- ..+ ...+++.+..+|+++|.+.++--.... ++...
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~ 135 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWN 135 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------Ccccc
Confidence 97754211 001 137789999999999999987554321 35557
Q ss_pred HHHHHHHCCCeEEEEEecC
Q 018740 320 IEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~~~g 338 (351)
+.++.+++||..++...+.
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 7889999999998876554
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.26 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-------CCCCCCce
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------LPFASSSI 249 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-------lp~~~~~f 249 (351)
.+..+|-+|-|.|.+...+....+...+++++++|.|++.|++.+.-.. ..+..++..|... ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 3568899999999999999988888899999999999999998765431 1223333333211 11245679
Q ss_pred eeEEe----ccccccCCCh------HHHHHHHHhcccCCcEEEEEeeccCC
Q 018740 250 DAVHA----GAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDG 290 (351)
Q Consensus 250 D~V~~----~~vl~h~~d~------~~~l~~i~~~LkpgG~li~~~~~~~~ 290 (351)
|+++. .. .|-+..| ..+|..+...|.|.|.+++.....+.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 99884 22 3334333 37788999999999999997776654
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.7 Score=39.26 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDA 251 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~ 251 (351)
...++.|+-+| -.-..+.+++-.+-..++..+|+++..+....+.+++. +..+++.+.-|+.+ |+| ...||+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCe
Confidence 33567899999 55566777776666679999999999999998887776 35679999999876 333 368999
Q ss_pred EEeccccccCCChHHH-------HHHHHhcccCC---cEEEEEee
Q 018740 252 VHAGAAIHCWSSPSTG-------VAEISRVLRPG---GVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~-------l~~i~~~Lkpg---G~li~~~~ 286 (351)
.+ .||... +..=...||.- |++.++.-
T Consensus 225 fi--------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 225 FI--------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ee--------cCchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 88 466533 33333455554 66776543
|
|
| >PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.11 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=15.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
--||.||++..... .....+|+.|+..+
T Consensus 4 rfC~~CG~~t~~~~---------~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 4 RFCGRCGAPTKPAP---------GGWARRCPSCGHEH 31 (32)
T ss_dssp SB-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred cccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence 35999999876654 23678999998753
|
; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.56 Score=41.96 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=61.7
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHH---h-C-CCCeEEEEeCCH--------------------------HHHHHH
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAK---S-G-LFSLVVALDYSE--------------------------NMLKQC 217 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~gvD~s~--------------------------~~~~~a 217 (351)
+...+...-++.|+|.||-.|..+..++. . + ...++++.|--+ ..++..
T Consensus 66 ~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V 145 (248)
T PF05711_consen 66 VEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEV 145 (248)
T ss_dssp HHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHH
T ss_pred HHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHH
Confidence 33344344467999999999976654432 2 1 244788887522 123334
Q ss_pred HHHHhhhCCCCCCCeEEEEecCCC-CC-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 218 YEFVQQESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 218 ~~~~~~~~g~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++++... |...+++.++.+.+.+ +| .+...+-++..-.-++ ..-...|+.++..|.|||++++-++.
T Consensus 146 ~~n~~~~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 146 RENFARY-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp HHCCCCT-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred HHHHHHc-CCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4444333 3335789999999854 44 1223333333211111 12358899999999999999996654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.11 Score=30.11 Aligned_cols=26 Identities=31% Similarity=0.837 Sum_probs=14.2
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|++.....+ ...+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYED----------GELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred CCCCCCCcceecc----------CCEEeCCcccccC
Confidence 6999999766543 4688999998754
|
The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.81 E-value=3.3 Score=41.22 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCCcHHHHHHHHhccCCC--CCCeEEEEcCccCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC
Q 018740 158 GFPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231 (351)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~ 231 (351)
-++.+....+.+...+.+. ++..|.|.-||+|.++....+. + ....++|-+..+.+...++.++... +.....
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~t 274 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYAN 274 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCccc
Confidence 3566777777776666543 4568999999999988765432 1 1246899999999999999875443 211222
Q ss_pred eEEEEecCCC-CCC-CCCceeeEEecccc--------------------cc----CCCh-HHHHHHHHhcccCCcEEEEE
Q 018740 232 FLLVRADISR-LPF-ASSSIDAVHAGAAI--------------------HC----WSSP-STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 232 i~~~~~d~~~-lp~-~~~~fD~V~~~~vl--------------------~h----~~d~-~~~l~~i~~~LkpgG~li~~ 284 (351)
.....+|-.. ..+ ....||.|+++--+ .| ..+. ..++..+..+|++||...+.
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 2222233211 111 13457776644211 12 1112 36788888999999987665
Q ss_pred eec
Q 018740 285 TYI 287 (351)
Q Consensus 285 ~~~ 287 (351)
-+.
T Consensus 355 ~~~ 357 (501)
T TIGR00497 355 CFP 357 (501)
T ss_pred ecC
Confidence 553
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK00464 nrdR transcriptional regulator NrdR; Validated | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.13 Score=42.31 Aligned_cols=40 Identities=25% Similarity=0.513 Sum_probs=22.6
Q ss_pred eeCCCCCCCcccccC-CCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGD-SSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~-~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
+.||-||++-..... ...+.+.......+|++||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 469999997522211 1111111222348899999988654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.76 Score=43.16 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (351)
.+-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 345689999999999999987654 4599999999777766654
|
|
| >PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.11 Score=36.43 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=18.0
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
+.||.|+.+|.+.. +.+.|..|+..|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 57999999988765 67888888876543
|
Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A. |
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.11 Score=40.24 Aligned_cols=23 Identities=30% Similarity=0.844 Sum_probs=19.1
Q ss_pred CCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
||+||+++.. ..+.|++|+....
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i~ 23 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEIE 23 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEEE
Confidence 9999999876 4699999987653
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.9 Score=39.86 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.++|=+|+|. |.++..+++......++++|.++..++.+... . .+ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence 466888889875 77877777764333477789888766655431 0 01 11110 12458988843
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+ ..+..+.+.|+++|.+++...
T Consensus 208 -----~G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 -----SGDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CCCH-HHHHHHHHhhhcCcEEEEEee
Confidence 3233 357888899999999987654
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.1 Score=41.16 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.+|.-||.|. |.....++-- -.+.|+-+|+|..-+++....+ ..++.....+..++.-.-...|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 345788899886 6666655543 2569999999998888887653 345677776666554334578999976
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-.+---..|.-..+++.+.+|||++++=..
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 666666788888999999999999887543
|
|
| >PF14353 CpXC: CpXC protein | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.17 Score=40.48 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=24.3
Q ss_pred eeCCCCCCCcccccCCCccccc----------ccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIES----------AAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~----------~~~~~~~C~~C~~~~~~~ 111 (351)
+.||.|+..+......+++.+. .....+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 6799999965544333332111 122346899999987654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.12 E-value=5.6 Score=38.01 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=70.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHH----HHHHHh---CCCCeEEEEeC----CHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFS----RIFAKS---GLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~----~~l~~~---~~~~~v~gvD~----s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
..|.+.+.....-.|+|+|.|.|.-- ..|+.+ -|..++||++. +...++.+.+++.+.-...+-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 34555555556678999999999643 334433 24568999999 77778777776654310002334444
Q ss_pred Ee---cCCCC-----CCCCCceeeEEeccccccCCC-------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 236 RA---DISRL-----PFASSSIDAVHAGAAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 236 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.. +++.+ ...++..=+|-+...|||+.+ |...+-...+.|+|.-++ +.+...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeecC
Confidence 42 23333 223344556667778899863 333344555678998544 444433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.11 Score=42.76 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=23.8
Q ss_pred CceeCCCCCCCcccccCCCcc------cccccCCccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~ 108 (351)
..-.||.|+++|.....+... ........++|++||..|
T Consensus 96 e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 96 EFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 467899999987655422110 111223356799999776
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.9 Score=43.85 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=63.9
Q ss_pred eEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHh---hhCC---CCCCCeEEEEecCCCCCCCC---
Q 018740 180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ---QESN---FPKENFLLVRADISRLPFAS--- 246 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~---~~~g---~~~~~i~~~~~d~~~lp~~~--- 246 (351)
.|+-+|+|-|-+.....+. +-..++++||-++..+...+.+.. .+.+ .....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665543 445689999999664444443321 2200 01245899999998874321
Q ss_pred --------CceeeEEeccccccCCCh---HHHHHHHHhcccC----CcE
Q 018740 247 --------SSIDAVHAGAAIHCWSSP---STGVAEISRVLRP----GGV 280 (351)
Q Consensus 247 --------~~fD~V~~~~vl~h~~d~---~~~l~~i~~~Lkp----gG~ 280 (351)
+.+|+|++ ..|-.+.|- ..-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999996 233333332 2557777888876 776
|
|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.17 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=15.7
Q ss_pred CCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
||.||..+.. +.-.|+.||+.
T Consensus 2 Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCC-------------cCcchhhhCCc
Confidence 9999987653 45669999863
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.35 Score=46.88 Aligned_cols=107 Identities=22% Similarity=0.247 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCcee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSID 250 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD 250 (351)
.++.+|||.=|++|.-+..+++..+ ..+|++-|.+++.++..+++...+ + ....++....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-~-v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN-G-VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc-C-chhhcccccchHHHHHHhccccccccc
Confidence 3456899999999998888877643 357899999999999999887665 1 134455666676443 33356799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|- |.-+..+..+|..+.+.++.||+|.++.-..
T Consensus 186 vID----LDPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 186 VID----LDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred eEe----cCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 887 3444567799999999999999999876543
|
|
| >PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.16 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=19.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-||.|+.-|...... .....|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence 4599999977665421 1222899999887654
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I .... |
| >smart00659 RPOLCX RNA polymerase subunit CX | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.24 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.|..||..+.... ...++|+.||+...
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceEE
Confidence 478999999766542 46899999997644
|
present in RNA polymerase I, II and III |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.78 E-value=5.6 Score=37.45 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~~ 246 (351)
...++.+||=.|+|. |..+..+++.....+|+++|.++.-.+.+++. | .. .++...-.+. . ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-----G--a~--~~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-----G--AT--HTVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-----C--Cc--eEEcCCCcCHHHHHHHHhCC
Confidence 445688999999864 66667677664222599999999888888653 1 11 1111111110 0 112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+- ....+ ..+....+.|++||.+++...
T Consensus 244 ~g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 244 FGADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEECC
Confidence 35888873 33333 356778889999999987654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=89.73 E-value=9.6 Score=37.99 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=23.7
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCC
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (351)
..+--.|.|+=.....+.+.+|+..|..+|-+
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 35666777887788888888777778887755
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00661 RPOL9 RNA polymerase subunit 9 | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.3 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=22.9
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccccccCc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT 113 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 113 (351)
-||.||..+...... ....+.|+.|+..+.....
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 499999977554311 1147889999987665533
|
|
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.35 Score=32.29 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=26.7
Q ss_pred ccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
......+.|-.|++...+.. ...++|..||+...
T Consensus 15 r~~~miYiCgdC~~en~lk~----------~D~irCReCG~RIl 48 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKR----------GDVIRCRECGYRIL 48 (62)
T ss_pred CcccEEEEeccccccccccC----------CCcEehhhcchHHH
Confidence 55668899999999876654 46899999997543
|
0 [Transcription] |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.1 Score=42.35 Aligned_cols=121 Identities=9% Similarity=0.016 Sum_probs=80.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh------hCCCCCCCeEEEEecCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLLVRADIS 240 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~g~~~~~i~~~~~d~~ 240 (351)
..+.+.++..++....|+|+|.|.....++..+....-+|+++.....+.+..+... .-|.....++.+.+++.
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344555677788899999999999999888876555678888775544444332221 11433456778888876
Q ss_pred CCCC---CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 241 RLPF---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 241 ~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.... -....++|+++++.-. ++...-+.++..-+++|-+++-..+..
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccccc
Confidence 5321 2345788888777432 233344668889999998888765543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.6 Score=40.78 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=61.5
Q ss_pred HHHHHhccCC-CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+..+. .++.+|+=+|+|. |......++.. +.+|+.+|.++.-...|+.. ..... +..+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~- 254 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TMEEA- 254 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-
Confidence 3444444332 4688999999997 77666555543 34899999999877777652 11211 11111
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-...|+|+..- ..+..+-.+..+.+++||+++....
T Consensus 255 --v~~aDVVI~at-----G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 255 --VKEGDIFVTTT-----GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --HcCCCEEEECC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 12479988532 2333333345889999999987653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.32 Score=44.16 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=68.2
Q ss_pred CCeEEEEcCccCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
+..|+|+=.|.|+|+. .+...+ ...|+++|.+|..++..++.+..+ +. .++...+.+|-.. +-++...|-|...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N-~V-~~r~~i~~gd~R~-~~~~~~AdrVnLG- 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEAN-NV-MDRCRITEGDNRN-PKPRLRADRVNLG- 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhc-ch-HHHHHhhhccccc-cCccccchheeec-
Confidence 4689999999999998 666666 368999999999999999987765 11 3444555566544 3356777877743
Q ss_pred ccccCCChHHHHHHHHhcccCCcE-EEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGV-FVGT 284 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~-li~~ 284 (351)
-+|.-++-.--+.++|+|.|- ++-.
T Consensus 270 ---LlPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 270 ---LLPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ---cccccccchHHHHHHhhhcCCcEEEE
Confidence 345555445556677887443 4443
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.7 Score=38.88 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++...+|+|...|.++..|.+++- .|+++|-.+ |.+..-. .+.++....|-.+........|..+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4578999999999999999999976 999999755 4333322 578889999988775456679998886
Q ss_pred cccccCCChHHHHHHHHhcccC
Q 018740 256 AAIHCWSSPSTGVAEISRVLRP 277 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~Lkp 277 (351)
.| ..|.+.-+-|...|..
T Consensus 278 mV----EkP~rv~~li~~Wl~n 295 (358)
T COG2933 278 MV----EKPARVAALIAKWLVN 295 (358)
T ss_pred hh----cCcHHHHHHHHHHHHc
Confidence 55 6677776667776654
|
|
| >PRK00432 30S ribosomal protein S27ae; Validated | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.22 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=19.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
-.||.|++.+... ..+.+.|..||..+
T Consensus 21 ~fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 21 KFCPRCGSGFMAE----------HLDRWHCGKCGYTE 47 (50)
T ss_pred CcCcCCCcchhec----------cCCcEECCCcCCEE
Confidence 4799999852222 13789999998765
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=4.1 Score=41.99 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=57.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 256 (351)
+..+.-.|-|+-.....+.+.+|+..|.-+|-+ .+++.. .....++.+.=...|...+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-~~l~~~-----------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-QVVDTV-----------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-HHHHhh-----------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 345788888999999999999998889888854 222221 1245566676433333335677776443
Q ss_pred -ccccCCCh---HHHHHHHHhcc------cCCcEEEEEe
Q 018740 257 -AIHCWSSP---STGVAEISRVL------RPGGVFVGTT 285 (351)
Q Consensus 257 -vl~h~~d~---~~~l~~i~~~L------kpgG~li~~~ 285 (351)
.+-+.+|. +.+++.+.++. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 23334443 34444444333 3468888764
|
|
| >PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.11 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=19.7
Q ss_pred eCCCCCCCccc-ccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|+..-.. ......+.++...-.+.|.+|++.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 69999994211 1112333454556678899999865
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I .... |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.92 E-value=6.8 Score=36.47 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=59.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+..++.+||=.|+|. |.++..+++.. +.+|++++.++.-.+.+++. | ... .+ +..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-----G--a~~--vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-----G--AAS--AG--GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-----C--Cce--ec--ccccc--CcccceE
Confidence 4456688999999753 55666666653 34899999999888887764 1 111 11 11111 1235787
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++-... .+ ..+....+.|++||.+++...
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 653322 22 368888899999999987654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.27 Score=37.92 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-+||.||..|.- .......|+.||..|+..
T Consensus 9 KR~Cp~CG~kFYD----------Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD----------LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc----------CCCCCccCCCCCCccCcc
Confidence 4679999997643 224678899999998765
|
The function of members of this family is unknown. |
| >PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.35 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=18.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
+.|..|+....... ...++|+.||+...
T Consensus 1 Y~C~~Cg~~~~~~~----------~~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKP----------GDPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BST----------SSTSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCC----------CCcEECCcCCCeEE
Confidence 46899998766443 35789999997643
|
Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=88.00 E-value=6.4 Score=37.26 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~~~ 246 (351)
....++.+||=.|+|. |.++..+++.....+|+++|.++.-++.+++. | .. .++..+-.++ ....
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-----G--AT--ATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-----C--Cc--eEeCCCchhHHHHHHHHhC
Confidence 3455678888899864 66666676664222699999999988888653 1 11 1111111110 0112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+-. ...+ ..+....+.|+++|.++....
T Consensus 258 ~g~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEM-----AGSV-PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEcc
Confidence 358888742 2222 457778889999999887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.28 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=22.4
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
+......+.||.||......-..-. ...+.++|++||.
T Consensus 21 p~e~~v~F~CPnCGe~~I~Rc~~CR----k~g~~Y~Cp~CGF 58 (61)
T COG2888 21 PGETAVKFPCPNCGEVEIYRCAKCR----KLGNPYRCPKCGF 58 (61)
T ss_pred cCCceeEeeCCCCCceeeehhhhHH----HcCCceECCCcCc
Confidence 3444566889999965433221111 2346788888874
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.9 Score=37.93 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-c----CCCCCCCCCc
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-D----ISRLPFASSS 248 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d----~~~lp~~~~~ 248 (351)
..++.+||=+|+|. |.++..+++......|+++|.++.-.+.+++. | .. .++.. + +..+. ....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~~~~-~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-----G--AT--ALAEPEVLAERQGGLQ-NGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-----C--Cc--EecCchhhHHHHHHHh-CCCC
Confidence 34678999998864 66666666664222489999998888777763 1 11 11110 1 00111 1235
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+|+- ....+ ..+....+.|+++|.+++...
T Consensus 188 ~d~vid-----~~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 188 VDVALE-----FSGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCEEEE-----CCCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 888873 22222 457788899999999987654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.2 Score=42.55 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=41.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-.+.|+..++.+||-|.+|-...+..+.+ +| .+|++||+|+..+...+=+++..
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlAai 80 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLAAI 80 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence 445667788899999999876666666554 43 59999999999888877665543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[] | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.25 Score=29.93 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=20.8
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
....|+.|++.+... ..+.+.|..||+.
T Consensus 7 ~~~~C~~C~~~~~~~----------~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYS----------DDGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEc----------cCCEEEhhhCceE
Confidence 346699999984332 3589999999975
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.24 Score=41.96 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=26.5
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
+.+.....+.||.|+..++... .....+.|+.||..
T Consensus 110 ~~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred hhccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 3445557899999998766554 44568999999854
|
|
| >PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.34 Score=30.29 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=18.4
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
-.||.|+.||.... .+...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k----------~g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDK----------DGKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEec----------CCCEECCCCC
Confidence 46999999988733 3567899885
|
It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis []. |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.24 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=26.1
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
.+..-..+.||.|+..++... .....+.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 445567899999998766554 44467999999854
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PF13248 zf-ribbon_3: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.36 Score=26.86 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=16.5
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.||..+. .+.-.|++||.
T Consensus 3 ~~Cp~Cg~~~~-------------~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEID-------------PDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCC-------------cccccChhhCC
Confidence 57999998532 25678999985
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=86.87 E-value=14 Score=38.34 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=52.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHHHhhhCCCCCCCeEEEEec-CC--CCCCCCCceee
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN----MLKQCYEFVQQESNFPKENFLLVRAD-IS--RLPFASSSIDA 251 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~g~~~~~i~~~~~d-~~--~lp~~~~~fD~ 251 (351)
..+-..|-|+=.....+.+.+|+..+.-+|-+.. ..+...+.+.. ..+.++.+. +- .+.++ .+++
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l 501 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL 501 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence 3566677777777777777777667777775432 22223233322 233333332 21 11222 2455
Q ss_pred EE--eccccccCCCh---HHHHHHHHhcc------cCCcEEEEEeeccC
Q 018740 252 VH--AGAAIHCWSSP---STGVAEISRVL------RPGGVFVGTTYIVD 289 (351)
Q Consensus 252 V~--~~~vl~h~~d~---~~~l~~i~~~L------kpgG~li~~~~~~~ 289 (351)
|+ .....-+.+|. +.+++.+..+. ..+|.+++.+...+
T Consensus 502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 53 33334444542 33333333222 45789999887764
|
|
| >smart00440 ZnF_C2C2 C2C2 Zinc finger | Back alignment and domain information |
|---|
Probab=86.81 E-value=0.3 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=22.0
Q ss_pred eCCCCCCCccc-ccCCCcccccccCCccccccccccc
Q 018740 73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.||.|+..-.. -.....+.++-+.-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 69999984211 1112333444555678999999765
|
Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases. |
| >PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria | Back alignment and domain information |
|---|
Probab=86.60 E-value=8.6 Score=30.42 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=54.8
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+.-.|+|+.++--+- .|....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.+...
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~ 100 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP 100 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence 456899988766433 2667888889999999999999988642 224568889999999
Q ss_pred HCCCeEEEEEecC
Q 018740 326 ACGLVDFKCTRNR 338 (351)
Q Consensus 326 ~aGf~~v~~~~~g 338 (351)
.+|+...+....+
T Consensus 101 taGL~~t~~~~v~ 113 (127)
T PF11253_consen 101 TAGLVQTKSCAVG 113 (127)
T ss_pred hcCCeeeeeeccC
Confidence 9999988866544
|
|
| >PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.25 Score=31.96 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=25.6
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccc--ccccccccCce
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVGTH 114 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~g~ 114 (351)
.||.||+.......... ......-..+|.+ ||+.|.....+
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~~~ 43 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANLEF 43 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEEEE
Confidence 49999996544432222 2223445678988 99988765443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent |
| >COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.25 Score=41.61 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=22.5
Q ss_pred CceeCCCCCCCccc-ccCCCcccccccCCcccccccccccccc
Q 018740 70 NVLACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 70 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.+.||.|++.-.. ..... ....-.++|.+||.+++..
T Consensus 5 iy~~Cp~Cg~eev~hEVik~----~g~~~lvrC~eCG~V~~~~ 43 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIKE----RGREPLVRCEECGTVHPAI 43 (201)
T ss_pred EEEECCCCCcchhhHHHHHh----cCCceEEEccCCCcEeece
Confidence 35789999942211 11000 0122478999999999653
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.40 E-value=11 Score=35.98 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec-----CCC-C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-----ISR-L-PF 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d-----~~~-l-p~ 244 (351)
....++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++. | .. .++... ..+ + ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-----G--a~--~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-----G--IT--DFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-----C--Cc--EEEecccccchHHHHHHHH
Confidence 3456688999999875 66666677664222699999999888888652 1 11 122111 100 0 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
..+.+|+|+- ....+ ..+....+.+++| |.+++...
T Consensus 265 ~~~g~dvvid-----~~G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 265 TGGGVDYSFE-----CAGNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred hCCCCCEEEE-----CCCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 1225898874 33333 4577777888886 88776543
|
|
| >PF13453 zf-TFIIB: Transcription factor zinc-finger | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.13 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=21.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.||.|+..+..... .......|++|+-.+...
T Consensus 1 ~CP~C~~~l~~~~~-------~~~~id~C~~C~G~W~d~ 32 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-------GDVEIDVCPSCGGIWFDA 32 (41)
T ss_pred CcCCCCcccceEEE-------CCEEEEECCCCCeEEccH
Confidence 49999997654431 112456799998776554
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.11 E-value=7.5 Score=36.03 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec---CCCCCCCCCceeeE
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRLPFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d---~~~lp~~~~~fD~V 252 (351)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. | .. .++..+ +..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-----g--~~--~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-----G--AD--ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-----C--CC--EEEcCCchhhhhhhccCCCccEE
Confidence 678898888875 66766676664222689999998887766552 1 11 111111 11222122358998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+..... ...++++.+.|+++|.++...
T Consensus 236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 854321 235788899999999988654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases | Back alignment and domain information |
|---|
Probab=85.91 E-value=0.65 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.509 Sum_probs=18.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 105 (351)
+.||.|++......+. -+....+.++|..|+
T Consensus 6 v~CP~C~s~~~v~k~G---~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 6 VHCPRCQSTEGVKKNG---KSPSGHQRYRCKDCR 36 (36)
T ss_pred eeCCCCCCCCcceeCC---CCCCCCEeEecCcCC
Confidence 6799999965222211 111235678999885
|
Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.53 E-value=8.9 Score=33.53 Aligned_cols=74 Identities=7% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.++.+.+....+.....-|.+||.|.|..++.+.+.+. .+...++.++..+.-.+-..+.. ..+...+.+|+..
T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLR 109 (326)
T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEeccccce
Confidence 34445566666655667899999999999999998874 47788888876665555443333 3466667777643
|
|
| >smart00531 TFIIE Transcription initiation factor IIE | Back alignment and domain information |
|---|
Probab=85.43 E-value=0.35 Score=39.62 Aligned_cols=41 Identities=20% Similarity=0.582 Sum_probs=25.1
Q ss_pred cccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.+..-..+.||.|+..+........ .+ ..+.+.|+.||..-
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~-~d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEANQL-LD--MDGTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHHHHh-cC--CCCcEECCCCCCEE
Confidence 3334567999999986654331111 11 24559999998643
|
|
| >PF14205 Cys_rich_KTR: Cysteine-rich KTR | Back alignment and domain information |
|---|
Probab=85.34 E-value=0.64 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=22.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-+.||+||..-....+. +.....=.+.|+.|...-.+
T Consensus 4 Wi~CP~CgnKTR~kir~---DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 4 WILCPICGNKTRLKIRE---DTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred EEECCCCCCccceeeec---CceeccccccCCCCCceEEE
Confidence 36799999854333221 12233335789999876554
|
|
| >PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=85.21 E-value=0.42 Score=27.19 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=10.8
Q ss_pred eCCCCCCCcccccCCCcccccccCCcccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT 103 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~ 103 (351)
.||.|++++.... ..-.++|.+
T Consensus 1 ~CP~C~s~l~~~~---------~ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREE---------GEVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-C---------CTTCEEE--
T ss_pred CcCCCCCEeEcCC---------CCEeEECCC
Confidence 4999999987553 234677754
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.15 E-value=1.6 Score=41.62 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCCCC--CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 229 KENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 229 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+++.++.+++.+.- .+++++|.++.....+++++. ...++++.+.++|||+++.-+....
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 589999999987642 457899999999999999754 4779999999999999999777654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300 | Back alignment and domain information |
|---|
Probab=85.01 E-value=0.58 Score=36.79 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=23.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.-.||.||..+.- .......|+.||..|+..
T Consensus 9 Kr~Cp~cg~kFYD----------Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD----------LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc----------cCCCCccCCCcCCccCcc
Confidence 4679999997643 234788999999988654
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.3 Score=36.63 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
.+...--..+...++|+|||.|.++..+++.. ....++.||-...-.+.-+ ++... . ..+.+.=+..|+.++
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~-~-~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKD-E-SEPKFERLRIDIKDL 85 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhcc-C-CCCceEEEEEEeecc
Confidence 33333333456799999999999999999876 4458899998653332222 22222 0 013456667777665
Q ss_pred C
Q 018740 243 P 243 (351)
Q Consensus 243 p 243 (351)
.
T Consensus 86 ~ 86 (259)
T PF05206_consen 86 D 86 (259)
T ss_pred c
Confidence 4
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.8 Score=41.95 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCC--CCCCCceeeEEeccccc----------cC------CChHHHHHHHHhcccCCcEEEEE
Q 018740 230 ENFLLVRADISRL--PFASSSIDAVHAGAAIH----------CW------SSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 230 ~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~----------h~------~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+..++++|..+. .+++++||+|++.=-.. .+ .-....+.++.++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3456788887663 35678899999842110 00 01146889999999999999885
|
|
| >COG4306 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.65 E-value=0.38 Score=37.44 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCceeCCCCCCCcccccCC--CcccccccCCccccccccccccccC
Q 018740 69 KNVLACPICYKPLTWIGDS--SLSIESAAGSSLQCNTCKKTYSGVG 112 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~~~~~ 112 (351)
..++.||+|..++.-+.+- -...+...+..-.|.+||+.||+.+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3568999999865432210 1111112233457999999999853
|
|
| >smart00834 CxxC_CXXC_SSSS Putative regulatory protein | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.63 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=20.3
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
.+.||.||..+...... .......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 47899999966543311 1146788999987
|
CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.63 E-value=13 Score=34.78 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe----cCCC-
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR- 241 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~----d~~~- 241 (351)
.+.+..+..++.+|.-+|||. |.....-++.....+++++|+++.-++.|++. .-..++.. |+.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~ 246 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEA 246 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHH
Confidence 344555677889999999985 66666555554456999999999999999884 22223322 1111
Q ss_pred -CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 242 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....++..|.++ +..-+.. .++.....+.++|..++.-.
T Consensus 247 i~~~T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 247 IVELTDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HHHhcCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEec
Confidence 012233566654 4444444 67777888888998877554
|
|
| >PRK10220 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=0.74 Score=35.08 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=23.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
+-.||.|++...-.. ...+.|+.|++.+...
T Consensus 3 lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 3 LPHCPKCNSEYTYED----------NGMYICPECAHEWNDA 33 (111)
T ss_pred CCcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence 356999999876544 3578999999988655
|
|
| >KOG2906 consensus RNA polymerase III subunit C11 [Transcription] | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.46 Score=35.34 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=27.5
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccccCce
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
++-||.||..|...... . -..+.|+.|...+++...+
T Consensus 1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~ei 37 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISREI 37 (105)
T ss_pred CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEeeee
Confidence 36799999988776522 1 3678999999888876333
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.37 E-value=5.8 Score=37.66 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------------
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------------- 243 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------------- 243 (351)
+.+.||.+|+.+.....+++.++..+--|+++....+..+..+-... +.......+..+|....+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~-~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS-EHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCc-ccccccCceeccccccceeccccHHHHHhhcc
Confidence 45899999999999999999877667789999998888877653331 111223344444432111
Q ss_pred ---------------CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 244 ---------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 244 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
++..++|. ..++-|+.+...++......++|+|.+++.......+
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p 319 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLP 319 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCC
Confidence 22334444 4456677777778888999999999999877765433
|
|
| >PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [] | Back alignment and domain information |
|---|
Probab=84.35 E-value=0.76 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...|+.|++...... ..+.+.|..|+..++
T Consensus 3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 467999999876522 247889999998775
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=37 Score=33.46 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHhccCCCC------CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 166 FELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 166 ~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
...+...+...+ .-+++|+=||.|.+...+...|. .-|.++|+++.+.+.-+.+... .+.......|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI 143 (467)
T PRK10458 70 FAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDI 143 (467)
T ss_pred HHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccCh
Confidence 445555553222 45899999999999999988875 3567899999888777765321 12334445566
Q ss_pred CCC
Q 018740 240 SRL 242 (351)
Q Consensus 240 ~~l 242 (351)
.++
T Consensus 144 ~~i 146 (467)
T PRK10458 144 RDI 146 (467)
T ss_pred hhC
Confidence 554
|
|
| >TIGR00686 phnA alkylphosphonate utilization operon protein PhnA | Back alignment and domain information |
|---|
Probab=84.09 E-value=0.64 Score=35.38 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=23.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.||.|++...-.. ...+.|+.|++.+...
T Consensus 3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNEN 32 (109)
T ss_pred CcCCcCCCcceEec----------CCeeECcccccccccc
Confidence 46999999876544 3678999999887654
|
The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997). |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.08 E-value=14 Score=34.57 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=79.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceeeEEec
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 255 (351)
.+++|+=||.|.+..-+...|. .-+.++|+++.+++.-+.+. +...+...|+..+... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEeC
Confidence 4799999999999999999884 36789999999888887763 3245666777654321 1168999976
Q ss_pred cccccC---------CChH----HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 256 AAIHCW---------SSPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 256 ~vl~h~---------~d~~----~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
.-.+.+ .|+. --+.++...++| .+++.+.... .+. + +.-..+.+.+
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-------l~~-----------~-~~~~~~~i~~ 133 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-------LLS-----------S-KGQTFDEIKK 133 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-------HHh-----------c-CchHHHHHHH
Confidence 544433 3443 334556667778 3444333211 100 1 2235678999
Q ss_pred HHHHCCCe
Q 018740 323 LCRACGLV 330 (351)
Q Consensus 323 ll~~aGf~ 330 (351)
.|++.|+.
T Consensus 134 ~L~~~GY~ 141 (328)
T COG0270 134 ELEELGYG 141 (328)
T ss_pred HHHHcCCc
Confidence 99999996
|
|
| >PRK12495 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=0.6 Score=40.30 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.+....|+.||.++... .+..+|+.|+..+-.
T Consensus 39 tmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 39 TMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE 70 (226)
T ss_pred ccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence 44557899999998833 488999999977654
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.81 E-value=0.58 Score=40.57 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-- 242 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-- 242 (351)
+.+.+..++.+.++...+|.--|.|..+..+.+..++.+++++|.+|-+-+.|+....+. ..+.+..+.+.+..+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHH
Confidence 356778888899999999999999999999999988889999999998888887765332 123333333444333
Q ss_pred -----CCCCCceeeEEeccccccC--CChH
Q 018740 243 -----PFASSSIDAVHAGAAIHCW--SSPS 265 (351)
Q Consensus 243 -----p~~~~~fD~V~~~~vl~h~--~d~~ 265 (351)
.+.+.++|.|++......+ .+|.
T Consensus 108 l~~~~gl~~~~vDGiLmDlGcSSMQ~d~pe 137 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLGCSSMQVDNPE 137 (303)
T ss_pred HHHHhCCCcCCcceEEeecCccccccCCcc
Confidence 2557889999976554333 3454
|
|
| >PRK14890 putative Zn-ribbon RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=83.81 E-value=0.56 Score=31.60 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=19.3
Q ss_pred CCceeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
...+.||.||..+...-..- ......++|++||.
T Consensus 23 ~~~F~CPnCG~~~I~RC~~C----Rk~~~~Y~CP~CGF 56 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEKC----RKQSNPYTCPKCGF 56 (59)
T ss_pred cCEeeCCCCCCeeEeechhH----HhcCCceECCCCCC
Confidence 45688999988633221000 02235677888874
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=83.49 E-value=2.5 Score=38.68 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=44.0
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
.+.||+|+.....-|+-.|. +.++++|+|+|++.+... ...+-+.-...+ .+.+.++++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F-----------~~kv~eLA~ 278 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF-----------VKKVKELAK 278 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH-----------HHHHHHHHH
Confidence 46799999877666655554 677899999999987521 111111111111 357889999
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
++||+.+.
T Consensus 279 ~aG~~p~~ 286 (289)
T PF14740_consen 279 AAGFKPVT 286 (289)
T ss_pred HCCCcccc
Confidence 99998654
|
|
| >COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.48 E-value=0.72 Score=36.86 Aligned_cols=42 Identities=14% Similarity=0.314 Sum_probs=27.1
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCccccccccccccccCcee
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHF 115 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~ 115 (351)
....||.|++.. ...... .....+.++|+.|+..+....|+.
T Consensus 29 ~~~~cP~C~s~~-~~k~g~---~~~~~qRyrC~~C~~tf~~~~~~~ 70 (129)
T COG3677 29 TKVNCPRCKSSN-VVKIGG---IRRGHQRYKCKSCGSTFTVETGSP 70 (129)
T ss_pred ccCcCCCCCccc-eeeECC---ccccccccccCCcCcceeeeccCc
Confidence 347799999966 221111 112267899999999887765553
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.47 E-value=9.4 Score=36.06 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhhCCCCCCCeEEEE-ecCCCCCCCCCceeeE
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~g~~~~~i~~~~-~d~~~lp~~~~~fD~V 252 (351)
.++.+||-.|+|. |.++..+++.. ..++++++.++.... .+++. | .. .++. .+...+....+.+|+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~-----G--a~--~vi~~~~~~~~~~~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL-----G--AD--SFLVSTDPEKMKAAIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC-----C--Cc--EEEcCCCHHHHHhhcCCCCEE
Confidence 4577888899875 77777777663 347888888765433 22221 1 11 1111 0100111011247887
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+- ....+ ..+.+..+.|++||.++....
T Consensus 252 id-----~~g~~-~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 252 ID-----TVSAV-HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EE-----CCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence 73 33332 357788899999999887643
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=83.00 E-value=18 Score=33.56 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec---CCCC-C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRL-P-FA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d---~~~l-p-~~ 245 (351)
+...++.+||=+|+|. |.++..+++.. +.+ |+++|.+++..+.+++. | .. .++... ...+ . ..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~-----g--a~--~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL-----G--AD--FVINSGQDDVQEIRELTS 228 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----C--CC--EEEcCCcchHHHHHHHhC
Confidence 4455688998898764 66666666653 235 99999998888777653 1 11 111111 0011 0 12
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+|+|+-. ...+ ..+....+.|+++|.+++...
T Consensus 229 ~~~~d~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 229 GAGADVAIEC-----SGNT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCEEEEC-----CCCH-HHHHHHHHHhhcCCEEEEEcC
Confidence 2368988832 2222 345677889999999987554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.89 E-value=8.6 Score=32.53 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=58.4
Q ss_pred eEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCC--------CCCeEEEEecCCCCC
Q 018740 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFP--------KENFLLVRADISRLP 243 (351)
Q Consensus 180 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~--------~~~i~~~~~d~~~lp 243 (351)
+|.=||+|+ |. ++..++..|. +|+.+|.+++.++.+++++... .|.. ..++. ...|++.+-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 356688876 43 4555566666 9999999999998888876541 0110 12333 334554432
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..|+|+=.- .|.+.-...+++++.+.+.|+-+|.-.+..
T Consensus 78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 477777322 132223358899999999999988776554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.79 E-value=0.72 Score=44.06 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=26.2
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
.....=.||.||......+ .+.++|+.|+..++..
T Consensus 346 ~~~~~p~Cp~Cg~~m~S~G----------~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 346 YERVNPVCPRCGGRMKSAG----------RNGFRCKKCGTRARET 380 (421)
T ss_pred eEEcCCCCCccCCchhhcC----------CCCcccccccccCCcc
Confidence 3444457999999876555 3489999999888765
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=82.76 E-value=3.3 Score=35.13 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHhccCCCCCC-eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 168 LMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
.+...+...++. .|+.+|||-=.....+....+...++-+|. |++++.-++.+.........+..++.+|+.+..
T Consensus 68 ~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 68 AVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 344555333344 899999998777777776544456667775 556666666555430000123457889987531
Q ss_pred ------CCCCceeeEEeccccccCC
Q 018740 244 ------FASSSIDAVHAGAAIHCWS 262 (351)
Q Consensus 244 ------~~~~~fD~V~~~~vl~h~~ 262 (351)
+..+..-++++-+++.+++
T Consensus 147 ~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHhCCCCCCCeEEEEcchhhcCC
Confidence 3345566777788888875
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc | Back alignment and domain information |
|---|
Probab=82.36 E-value=0.83 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=18.2
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.||+.-.... .....++|..|++
T Consensus 19 ~~CP~Cg~~~~~~~--------~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRL--------KTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEe--------CCCCeEECCCCCC
Confidence 77999998521111 1147899999975
|
It may be a zinc-binding beta ribbon domain that could bind DNA. |
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=81.89 E-value=0.72 Score=37.78 Aligned_cols=39 Identities=23% Similarity=0.517 Sum_probs=23.3
Q ss_pred ceeCCCCCCCcccccCCCcc------cccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~~ 109 (351)
.-+||.|+++|......... .........+|+.||..|-
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 56899999977554322110 0011123678999998774
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.83 E-value=0.73 Score=38.82 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=23.4
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
-.-.|+.|+++|.... ..+.|++|+..-.
T Consensus 148 I~A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tEk 176 (188)
T COG1096 148 IYARCSRCRAPLVKKG-----------NMLKCPNCGNTEK 176 (188)
T ss_pred EEEEccCCCcceEEcC-----------cEEECCCCCCEEe
Confidence 3457999999998754 7899999997654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=81.51 E-value=3.5 Score=37.11 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHH
Q 018740 191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270 (351)
Q Consensus 191 ~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~ 270 (351)
++..|.+.++..+|+|+|.++..++.|++. | -+.-...+.+.+ ..+|+|+.+--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-----g----~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-----G----IIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-----T----SSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-----C----CeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence 456788888778999999999999888763 1 111122222222 23699986544332 2455666
Q ss_pred HHhcccCCcEEEEE
Q 018740 271 ISRVLRPGGVFVGT 284 (351)
Q Consensus 271 i~~~LkpgG~li~~ 284 (351)
+...+++|+++.=.
T Consensus 65 ~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 65 IAPYLKPGAIVTDV 78 (258)
T ss_dssp HHCGS-TTSEEEE-
T ss_pred hhhhcCCCcEEEEe
Confidence 66666666655443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.47 E-value=3.4 Score=41.40 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CC----CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LP----FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp----~~ 245 (351)
..++..|||++|..|.++....+..| ..-|+|+|+-|-- ..+++.-.+.|+.. .+ ..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 44577899999999999999988754 4578999997621 13445445555432 11 11
Q ss_pred CCceeeEEecccc----ccCCCh-------HHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAI----HCWSSP-------STGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl----~h~~d~-------~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.-..|+|+.-++- .++.|. ...|+-....|+-||.++--.+...
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~ 162 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSE 162 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCC
Confidence 2235777754331 111111 2456666778899999655444333
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=81.46 E-value=18 Score=34.76 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe---cCCC-CC--CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~---d~~~-lp--~~~ 246 (351)
...++.+||=.|+|. |.++..+++......++.+|.++.-++.+++. | -. .+... +... +. ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-----G---a~-~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-----G---CE-TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-----C---Ce-EEecCCcccHHHHHHHHcCC
Confidence 345677887788864 66666666653223466778888888888763 1 11 11111 1100 10 122
Q ss_pred CceeeEEecccccc--------CCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h--------~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+-.-.-.. -.++...+++..+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898884332110 01223578999999999999988654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR00244 transcriptional regulator NrdR | Back alignment and domain information |
|---|
Probab=81.34 E-value=0.89 Score=36.83 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=26.1
Q ss_pred eeCCCCCCCcccccCCCcc-cccccCCccccccccccccccCce
Q 018740 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
+.||.|+.+-....++..+ ++......-.|.+|+..|..-+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 4699999965544433222 222334456799999988664433
|
Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes. |
| >COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription] | Back alignment and domain information |
|---|
Probab=81.21 E-value=0.87 Score=36.92 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=26.1
Q ss_pred eeCCCCCCCcccccCCCcc-cccccCCccccccccccccccCce
Q 018740 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSGVGTH 114 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~~~C~~C~~~~~~~~g~ 114 (351)
+.||.|++.-+...++... ++......-.|++|+..|..-+-.
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence 3699999965544433222 222334455699999988765433
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.19 E-value=1.5 Score=41.89 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
-+.+...++ +|..|-|+-||.|-+...+++.+. +|++-|.+++++++.+.+++.+ -....+++.+..|+.
T Consensus 240 herlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lN-kv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 240 HERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLN-KVDPSAIEIFNMDAK 309 (495)
T ss_pred HHHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccc-ccchhheeeecccHH
Confidence 344555444 478999999999999999999875 9999999999999999987664 111233677666653
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.12 E-value=7.1 Score=35.63 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=49.9
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
+..+.+.+... ...++..|||.=+|+|..+......+. ..+|+|+++..++.+.+++...
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 45555555555 455688999999999999999888877 8999999999999999998765
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=80.99 E-value=23 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCcee
Q 018740 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID 250 (351)
Q Consensus 173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD 250 (351)
....++.+||-.|+| .|..+..+++.. +.+|++++.++...+.+++. ... .++...-.... ...+.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL--------GAD-EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh--------CCc-EEeccCCcchHHhccCCCC
Confidence 345567789999987 576666666653 34899999999888777542 111 11111100000 0124588
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+++.... . ...+.++.+.|+++|.++....
T Consensus 228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred EEEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence 8874321 1 2357888899999999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=80.96 E-value=30 Score=31.84 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=60.2
Q ss_pred ccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe----cCCC-C-C
Q 018740 172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-P 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~----d~~~-l-p 243 (351)
.....++.+||=.|. |.|.++..+++.. +.++++++.+++..+.+++. | ... ++.. +... . .
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-----G--a~~--vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-----G--FDV--AFNYKTVKSLEETLKK 202 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-----C--CCE--EEeccccccHHHHHHH
Confidence 344566889998884 4577877777763 34899999998877777652 1 111 1111 1111 0 0
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
...+.+|+|+- .+.. ..+....+.|+++|.++...
T Consensus 203 ~~~~gvdvv~d-----~~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 203 ASPDGYDCYFD-----NVGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred hCCCCeEEEEE-----CCCH--HHHHHHHHHhCcCcEEEEec
Confidence 11246898873 2222 24678889999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.72 E-value=24 Score=33.38 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=59.6
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEE--ecCCC-C-CCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVR--ADISR-L-PFAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~--~d~~~-l-p~~~ 246 (351)
....++.+||=.|+|. |.++..+++.....+|+++|.++...+.+++. | ... +.... .++.. + ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-----G--a~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-----G--ATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-----C--CCeEEcccccchhHHHHHHHHhC
Confidence 3455688999999864 66777777764223799999999988888653 1 111 11000 00000 0 0112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
+.+|+|+- ....+ ..+.+..+.++++ |.+++...
T Consensus 254 ~g~d~vid-----~~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFE-----CIGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEE-----CCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 35888873 33233 3567778899886 98876554
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK14811 formamidopyrimidine-DNA glycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=0.84 Score=41.45 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=23.1
Q ss_pred eCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.||.||.++..... ...+.+.|+.|+...+-
T Consensus 237 pC~~Cg~~I~~~~~-------~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 237 PCPRCGTPIEKIVV-------GGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCcCCCeeEEEEE-------CCCCcEECCCCcCCCCC
Confidence 69999998765432 23578999999977653
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.51 E-value=3.9 Score=33.40 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.3
Q ss_pred EEcCccC--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH
Q 018740 183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF 220 (351)
Q Consensus 183 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~~~~a~~~ 220 (351)
|||++.| .....+. ..++..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 456677999999999999988888
|
; PDB: 2PY6_A. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=80.35 E-value=25 Score=32.59 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=65.7
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCHHHH-HHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENML-KQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~-~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.....++..++.+|+-+|+|. |......... + ..+|+.+|.++.-. +.+++. .. ..... .++.-
T Consensus 168 ~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~--------g~--~~~~~--~~~~~ 234 (311)
T cd05213 168 LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL--------GG--NAVPL--DELLE 234 (311)
T ss_pred HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc--------CC--eEEeH--HHHHH
Confidence 333333444678999999975 5544333333 3 34899999997644 333331 11 22221 11111
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.-...|+|+..-.-.+. ...+..+.+....+|.+++....+.+. .+... .-+....++.++++++.
T Consensus 235 ~l~~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v~--------~l~~v~l~~vDdl~~~~ 300 (311)
T cd05213 235 LLNEADVVISATGAPHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEVG--------ELEGVRLYTIDDLEEVV 300 (311)
T ss_pred HHhcCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhhc--------cCCCcEEEEHHHhHHHH
Confidence 11347999976554332 333444433333355666644443221 11100 01134567788887776
Q ss_pred HH
Q 018740 325 RA 326 (351)
Q Consensus 325 ~~ 326 (351)
++
T Consensus 301 ~~ 302 (311)
T cd05213 301 EE 302 (311)
T ss_pred HH
Confidence 64
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species | Back alignment and domain information |
|---|
Probab=80.31 E-value=1.3 Score=24.15 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=6.2
Q ss_pred Ccccccccc
Q 018740 97 SSLQCNTCK 105 (351)
Q Consensus 97 ~~~~C~~C~ 105 (351)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 566777776
|
It is likely to bind zinc via its four well-conserved cysteine residues. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=80.11 E-value=19 Score=34.20 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=57.4
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-----cCCC-C-CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA 245 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-----d~~~-l-p~~ 245 (351)
+..++.+||-.|+|. |.++..+++......|+++|.++...+.+++. | .. .++.. +... + ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-----G--a~--~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-----G--VT--DFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-----C--Cc--EEEcccccchHHHHHHHHHh
Confidence 445688999999865 66666666653223588999998887777653 1 11 11111 1100 0 011
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~ 285 (351)
.+.+|+|+- ....+ ..+....+.|++| |.+++..
T Consensus 261 ~~g~d~vid-----~~G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSFE-----CVGDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEEE-----CCCCh-HHHHHHHHhhccCCCEEEEEC
Confidence 225888873 22222 3467788889998 9987644
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 351 | ||||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 9e-07 | ||
| 3bkw_A | 243 | Crystal Structure Of S-Adenosylmethionine Dependent | 4e-06 | ||
| 3ccf_A | 279 | Crystal Structure Of Putative Methyltransferase (Yp | 2e-05 | ||
| 4hg2_A | 257 | The Structure Of A Putative Type Ii Methyltransfera | 2e-05 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 4e-05 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 1e-04 | ||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 3e-04 |
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243 | Back alignment and structure |
|
| >pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279 | Back alignment and structure |
|
| >pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-27
Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 22/192 (11%)
Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
F + + W + Y+K ++D CG G + +++G
Sbjct: 25 EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75
Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
V +D SE M+++ + + ++ D+S LPF + +A+ A ++
Sbjct: 76 --YKAVGVDISEVMIQKG------KERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127
Query: 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 319
P + EI RVL+ G + RL ++++ + E
Sbjct: 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVV-----CNTMMPWE 182
Query: 320 IEDLCRACGLVD 331
E L + G
Sbjct: 183 FEQLVKEQGFKV 194
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-25
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 14/161 (8%)
Query: 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
+ + L G I D G+G +S A GLF V A++ S M +Q
Sbjct: 15 TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72
Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
L S+D V + AIH +S E+ R++R
Sbjct: 73 ----VVHPQVE-----WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRD 123
Query: 278 GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 318
G + + D + + + + + L E+
Sbjct: 124 GTIVL---LTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQ 161
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-24
Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 8/175 (4%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G ID G G S AK FS + ALD+S++M + + + + + V+
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQI--VQG 100
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
D+ +P + D + + ++ W +T EI R+L+ GG +
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSIS 160
Query: 298 SRLLRQN---MMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GF-VMFTATK 347
+ ++R+N + + + +++ G+ ++ GF ++ + T
Sbjct: 161 AEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD 215
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 4e-24
Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 11/173 (6%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
++ P G +++A CG G + I AK+ + + ++D S L++ E ++
Sbjct: 26 EKLLHHDTVYPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83
Query: 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283
+N ++A+I LPF SS D + + SP + + +VL+PGG
Sbjct: 84 N---GIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
Query: 284 TTYIVDGPFNLIPFSRLLRQNMMQISGSYT-----FLSEREIEDLCRACGLVD 331
G P + + + L R+I L + G
Sbjct: 141 IEG-DHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 5e-24
Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 11/184 (5%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
+ + ++D + G G + FA VVA D +E++LK F++
Sbjct: 24 SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 81
Query: 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283
+ V+ D ++PF V A H + +P++ V+E RVL+ GG +
Sbjct: 82 N---GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL- 137
Query: 284 TTYIVDGPFNLIPFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV 341
+VD + + + + + + + G +
Sbjct: 138 ---LVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194
Query: 342 MFTA 345
+F
Sbjct: 195 IFED 198
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 2e-23
Identities = 33/208 (15%), Positives = 56/208 (26%), Gaps = 24/208 (11%)
Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
+ + G ++ G+G + G
Sbjct: 17 AHPPEVAGQIATAMASAVHPKGE---------------EPVFLELGVGTGRIALPLIARG 61
Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
+ALD ML+ +Q+ +V+AD +P S+ V H
Sbjct: 62 YR--YIALDADAAMLEV----FRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115
Query: 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLS 316
+AE RVL+PGG + + R + +
Sbjct: 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKR 175
Query: 317 EREIEDLCRACGLVDFKCTRNRGFVMFT 344
+E+E+ R GL R T
Sbjct: 176 LKEVEEALRRLGLKPRTREVARWREERT 203
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-22
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
E+ ++ L V G I+D CG G F R + G S V+ LD SE ML +
Sbjct: 31 EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA------R 83
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
+ P RAD+ +L S D ++ A+H + + + L PGG FV +
Sbjct: 84 AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
Query: 285 T 285
T
Sbjct: 144 T 144
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-22
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 30/159 (18%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
+ G I+D CG+G + + + + + +D + LK+ KE F
Sbjct: 13 IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEV-----------KEKF 59
Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD--- 289
V +S+D + + H ++E+ R+L+ G + I+D
Sbjct: 60 DSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI----IIDWRK 115
Query: 290 -----GPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323
GP I + M S F+ E+
Sbjct: 116 ENTGIGPPLSIRMDE--KDYMGWFSN---FVVEKRFNPT 149
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 8e-22
Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 23/161 (14%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G ++ G+G F+ + ++ SE M + K +++
Sbjct: 48 EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA----------RKRGVFVLKG 91
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
LP S D I P + E R+L+ GG + +
Sbjct: 92 TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI----VGIVDRES-FL 146
Query: 298 SRLLRQNMMQIS--GSYTFLSEREIEDLCRACGLVDFKCTR 336
R +N + + F S E+ DL R G +FK +
Sbjct: 147 GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 1e-21
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)
Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
P+ +K + L ++D G L + ++ S+ LK
Sbjct: 3 KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60
Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISR 273
+ F ++ + K N + DI +LPF S+ V++ I + EI R
Sbjct: 61 KAENFSRENN--FKLNI--SKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116
Query: 274 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS----YTFLSEREIEDLCRACGL 329
VL+PGG+ ++ +Q+ ++++S E + + +
Sbjct: 117 VLKPGGLACINFLTTKDE-RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175
Query: 330 VDFK----------CTRNRGFVMFTATKPSQN 351
+ + +G+V + A K S++
Sbjct: 176 LFKEDRVVERINDGLKIKQGYVDYIAEKFSKS 207
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-21
Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 29/212 (13%)
Query: 154 FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
FV G ++ F + L+ V+ GN+++ G+G + +G V ++ S
Sbjct: 19 FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA- 269
M + PK F + D +SID + + A H + VA
Sbjct: 77 REMRMIA------KEKLPK-EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAI 128
Query: 270 -EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT--------FLSEREI 320
+ S++L GG V D F + Q + +
Sbjct: 129 AKYSQLLNKGGKIV----FADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
Query: 321 EDLCRACGL-VDFKCTRNRGFVMFTATKPSQN 351
+ + G V F + +VM ATK ++
Sbjct: 185 QTIFENNGFHVTFTRLNHFVWVM-EATKQLEH 215
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 6e-21
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
E+ +K L ++D CG G A+ G V+ +D SE ML +
Sbjct: 30 AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----- 83
Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ + I + + + V + A+H +S ++ L+ G F+
Sbjct: 84 -KRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFI 142
Query: 283 GTT 285
+
Sbjct: 143 FSV 145
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 8e-21
Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 11/170 (6%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
++D G+G + F+ + +D ++ M++ F Q++ EN +
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQG 76
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
LPF S D + A H +S V E++RVL+ G F+ +VD P
Sbjct: 77 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYAPEDPV 132
Query: 298 SRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTA 345
++ ++ S E + + A L + + + +
Sbjct: 133 LDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDS 182
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 8e-21
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
L+ Y+K G ++D +CG G FS + G VV +D SE+M+++ E+ +
Sbjct: 30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRKAREYAKSR-- 83
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284
+ N + D +L F + D V +I + + E+ RVL+P G F+
Sbjct: 84 --ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141
Query: 285 TYIVDGPFNLIPFSRLLRQN 304
+ + S ++ Q
Sbjct: 142 FTDLRELLPRLKESLVVGQK 161
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 9e-21
Identities = 20/177 (11%), Positives = 48/177 (27%), Gaps = 23/177 (12%)
Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
G E ++ + G I+D G+G ++ A G + L+ + +++
Sbjct: 20 LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77
Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC--WSSPSTGVAEISR 273
+ P F I+ L + + A ++ + +
Sbjct: 78 LARQ------THPSVTF--HHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129
Query: 274 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330
+ GG + + + + M + E+ G
Sbjct: 130 AVEDGGGLLMSFFSGPSL-----------EPMYHPVATAYRWPLPELAQALETAGFQ 175
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 16/161 (9%)
Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
+E +KG L P G ++++ G+G + R V ++ SE ML
Sbjct: 24 AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRRRA- 76
Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
VRA LPF S D V + + E RVLRPGG V
Sbjct: 77 -------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALV 129
Query: 283 GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323
P+ + RL + ++ + FL+ +++ L
Sbjct: 130 VGVLEALSPW-AALYRRLGEKGVLPWAQ-ARFLAREDLKAL 168
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-18
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
Y + WR + E L+ G I+DA CG G +K G V+
Sbjct: 19 YAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQGRIGGYLSKQGHD--VL 72
Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
D ++ + +FP+ + V D+S + + D + + + + +
Sbjct: 73 GTDLDPILIDYA------KQDFPEARW--VVGDLSVDQISETDFDLIVSAGNVMGFLAED 124
Query: 266 TG---VAEISRVLRPGGVFV 282
+A I R L G V
Sbjct: 125 GREPALANIHRALGADGRAV 144
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 1e-18
Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 14/187 (7%)
Query: 150 WRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 208
W G + + + + ++D CG G R A G V +D
Sbjct: 24 WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVD 81
Query: 209 YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 268
++ + + +++P D + A A+ +
Sbjct: 82 GDRTLVDAA----RAAGAGEVHLASYAQLAEAKVPVGKD-YDLICANFALL-HQDIIELL 135
Query: 269 AEISRVLRPGGVFVGTT----YIVDGP-FNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323
+ + +L PGG V T + DG + + F + +
Sbjct: 136 SAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNA 195
Query: 324 CRACGLV 330
GL
Sbjct: 196 LDMAGLR 202
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-18
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 21/166 (12%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
L P G I+D CG+G + A+SG + V+ D + M+++ N+P +F
Sbjct: 53 LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKA------RQNYPHLHF 104
Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
+ AD +DAV + A +H P +A I + L+ GG FV G
Sbjct: 105 DV--ADARNFRVDKP-LDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG---GKG 158
Query: 293 NLIPFSRLLRQNMMQIS-------GSYTFLSEREIEDLCRACGLVD 331
N+ L + + + F S E ++ G
Sbjct: 159 NIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 41/200 (20%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 145 IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 192
+ R W +N +G G + + + ++ G ++D CG G +
Sbjct: 19 PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76
Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
A + V + S + Q + F AD LPF +S DAV
Sbjct: 77 VRLATARDVR-VTGISISRPQVNQANARATAAGLANRVTF--SYADAMDLPFEDASFDAV 133
Query: 253 HA-GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 311
A + H + E++RVLRPGG +++ P + G
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVLLAPVE--GAKKEAVDAFRAGGGV 190
Query: 312 YTFLSEREIEDLCRACGLVD 331
+ E E R LV
Sbjct: 191 LSLGGIDEYESDVRQAELVV 210
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-18
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
++ YLK ++D G+G +S + G VV +D S+ ML+ E
Sbjct: 46 SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVARE------- 94
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHA-GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
K +V A LPF S + +AV A G + + +EI RVL P G+ +
Sbjct: 95 --KGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 5e-18
Identities = 37/190 (19%), Positives = 62/190 (32%), Gaps = 38/190 (20%)
Query: 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
G L G I++ CG+G + +G V A D S + + + +
Sbjct: 39 GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEASRRLGRPV----- 89
Query: 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIV 288
+L + DAV A A + + I R L+PGG+F +
Sbjct: 90 ----RTMLFHQLDAIDA-YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144
Query: 289 DGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL---VDFKCTRNRG------ 339
+G +L R Y + SE + G V + + +G
Sbjct: 145 EGE----GRDKLARY--------YNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELA 192
Query: 340 -FVMFTATKP 348
F+ + KP
Sbjct: 193 QFLHVSVRKP 202
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 38/225 (16%)
Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
++ + + +I+D G+GL S +
Sbjct: 24 FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68
Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
+ +D SE ML+ + + AD S+ F D V + +IH
Sbjct: 69 ATFTLVDMSEKMLEIA-----KNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHL 122
Query: 262 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS-------- 311
+L+ G+F+ + + ++ + + ++ SG
Sbjct: 123 EDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG 182
Query: 312 ------YTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 349
+ + + + G D C + F + K
Sbjct: 183 YERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTE 227
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-17
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE 219
PEK + LK G ++D G+G + +K G V A+D E M+ +E
Sbjct: 25 DPEKVLKEFG--LKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80
Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
V + +N +++++ +++P +++D + H S P + E+ RV +P
Sbjct: 81 KVNKL---GLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFA 137
Query: 280 VFV 282
Sbjct: 138 YLA 140
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
F F+ ++ RQ G PE ++ L I D CG+G +
Sbjct: 11 FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63
Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254
A + +D + ++ E + + + + + LPF + +D + +
Sbjct: 64 LADYVKGQ-ITGIDLFPDFIEIFNENAVKANCADRVKG--ITGSMDNLPFQNEELDLIWS 120
Query: 255 GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
AI+ G+ E S+ L+ GG
Sbjct: 121 EGAIYN-IGFERGMNEWSKYLKKGGFIA 147
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 3e-17
Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 21/190 (11%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
++ + G++++ + G+G ++R + V ALD S M+ +
Sbjct: 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-----GRHG 88
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGT 284
F + D+ DAV + + + PGGV
Sbjct: 89 LDNVEF--RQQDLFDWTP-DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145
Query: 285 TYIVDGPFNL--------IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336
+ R L+ F S E+ + A G
Sbjct: 146 DVTDHERRLEQQDDSEPEVAVRRTLQDG-RSFRIVKVFRSPAELTERLTALGWSCSVDEV 204
Query: 337 NRGFVMFTAT 346
+ GF+ T
Sbjct: 205 HPGFLYATCR 214
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-16
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 18/181 (9%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
L+ K +I+D CG G + S +D E +L + E +
Sbjct: 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-- 70
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV---- 282
+ + D + + D A + ++P T + ++ ++ GG +
Sbjct: 71 --PYDSEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 127
Query: 283 -----GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE---REIEDLCRACGLVDFKC 334
+Y++DG + Q + + +I G+ + +C
Sbjct: 128 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIEC 187
Query: 335 T 335
Sbjct: 188 R 188
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-16
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 5/124 (4%)
Query: 160 PGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218
PG + ++ + I D CG+G + + A V LD+ +
Sbjct: 28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFN 86
Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278
+Q + + + LPF + +D + + AI+ G+ E + L+ G
Sbjct: 87 RNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFER-GLNEWRKYLKKG 143
Query: 279 GVFV 282
G
Sbjct: 144 GYLA 147
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-16
Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 191
++ F F S Y R P P ++++ Y ++D CG G
Sbjct: 1 SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50
Query: 192 SRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRAD----ISRLPFA 245
+ A+ F ++ D S M+K + + + +F + +D +
Sbjct: 51 TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110
Query: 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286
ID + A H W LR G Y
Sbjct: 111 KQKIDMITAVECAH-WFDFEKFQRSAYANLRKDGTIAIWGY 150
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-16
Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 27/191 (14%)
Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
Y W + G + L P +++A CG G + F
Sbjct: 21 YRHPWARVLS--GPDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--WA 74
Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP 264
A D+S +LK +N P + LP + + + P
Sbjct: 75 AYDFSPELLKLA------RANAPHADVYEWNGK-GELPAGLGAPFGLIVSRRG------P 121
Query: 265 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE---IE 321
++ + + + P F+ V N+ L I E
Sbjct: 122 TSVILRLPELAAPDAHFL----YVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWE 177
Query: 322 DLCRACGLVDF 332
D +
Sbjct: 178 DWQMRGEFMGK 188
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 2e-15
Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 50/220 (22%)
Query: 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTC------KKTYSGVGTHFDMTAASGSKD 125
+CP+C++PL+ +S C K+ Y + S+D
Sbjct: 3 FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGY----VNLLPVQHKRSRD 47
Query: 126 YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
G+ S R F+ + + R V ++ L ++D
Sbjct: 48 PGD--SAEMMQARRAFLDAGHYQPLRDAIV-----------AQLRERL-DDKATAVLDIG 93
Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245
CG G ++ FA + LD S+ +K +P A RLPF+
Sbjct: 94 CGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYP--QVTFCVASSHRLPFS 145
Query: 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285
+S+DA+ +P E++RV++PGG + T
Sbjct: 146 DTSMDAI------IRIYAPCK-AEELARVVKPGGWVITAT 178
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 3e-15
Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 12/144 (8%)
Query: 145 IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
+ E W + V G P + ++ YL+ I+D CGSG S A G
Sbjct: 1 MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54
Query: 204 VVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HC 260
V +D + ++ + + + S L F SS D A +
Sbjct: 55 VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114
Query: 261 --WSSPSTGVAEISRVLRPGGVFV 282
S + E+ RVL+PG
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLY 138
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-15
Identities = 44/261 (16%), Positives = 82/261 (31%), Gaps = 51/261 (19%)
Query: 91 IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
+E++ G S T K ++D + Y W
Sbjct: 3 VENSNGQSQPAATSKTVKDNAEIYYDDDDSDR----------------------FYFHVW 40
Query: 151 -RQNFVWGGFPGPEKEFEL----------------MKGYLKPVLGGNIIDASCGSGLFSR 193
++ G + P + E+ M G L+ +D G G +R
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAAR 98
Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253
+ S + L+ + K+ E+ Q +N + +P +S D +
Sbjct: 99 FLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNSYDFIW 155
Query: 254 A-GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSY 312
+ A +H E +RVL+P GV T + + + +L + + +
Sbjct: 156 SQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL-----H 209
Query: 313 TFLSEREIEDLCRACGLVDFK 333
S L + CGLV +
Sbjct: 210 DMGSLGLYRSLAKECGLVTLR 230
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 20/191 (10%)
Query: 145 IYERGWRQNFV-WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
+YE + +N++ GG + L L ++D G G +
Sbjct: 26 VYEFIFGENYISSGGLE--ATKKILSDIELNE--NSKVLDIGSGLGGGCMYINEKYGAH- 80
Query: 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS 263
+D N++ E V K F DI F ++ D +++ AI S
Sbjct: 81 THGIDICSNIVNMANERVSGN---NKIIF--EANDILTKEFPENNFDLIYSRDAILALSL 135
Query: 264 P--STGVAEISRVLRPGGVFVGTTY-IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320
+ + + L+P G + T Y + F ++Q YT ++ E
Sbjct: 136 ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRK------YTLITVEEY 189
Query: 321 EDLCRACGLVD 331
D+ AC +
Sbjct: 190 ADILTACNFKN 200
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 1e-14
Identities = 44/265 (16%), Positives = 77/265 (29%), Gaps = 32/265 (12%)
Query: 90 SIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFR--MPFMSFIYE 147
S S S + V ++ T S + A ++ I +
Sbjct: 4 SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63
Query: 148 RGWRQNFVWG-GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVV 205
+G G L G ++D CG+G + +K G V+
Sbjct: 64 EVL--EKFYGCGST-------LPADGSLE--GATVLDLGCGTGRDVYLASKLVGEHGKVI 112
Query: 206 ALDYSENMLKQC-----YEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHA 254
+D +N L+ Y + + + N ++ I L SS+D V +
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172
Query: 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS-YT 313
+ ++ EI RVLR GG + S +Q+ +
Sbjct: 173 NCVCNLSTNKLALFKEIHRVLRDGGELY-----FSDVYADRRLSEAAQQDPILYGECLGG 227
Query: 314 FLSEREIEDLCRACGLVDFKCTRNR 338
L + L G D +
Sbjct: 228 ALYLEDFRRLVAEAGFRDVRLVSVG 252
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-14
Identities = 36/270 (13%), Positives = 73/270 (27%), Gaps = 43/270 (15%)
Query: 85 GDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSF 144
G S+ + A+ +L + + +M A + D + P +
Sbjct: 1 GPGSMPSKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD---PEKGW-------- 49
Query: 145 IYERG---WRQ-----NFVWGGF---PGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFS 192
Y + WR + V GG + E L +D G G +
Sbjct: 50 -YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108
Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
+ ++ L+ ++ML++ + F + A + ++ D +
Sbjct: 109 KNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVG---KF--ILASMETATLPPNTYDLI 162
Query: 253 HAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG 310
+ + L P G G R + +
Sbjct: 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----------RFLVDKEDS 212
Query: 311 SYTFLSEREIEDLCRACGLVDFKCTRNRGF 340
S T S+ + L G+ K +
Sbjct: 213 SLTR-SDIHYKRLFNESGVRVVKEAFQEEW 241
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-13
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 206
+ W G L++ L+P I+ CG+ S G F V +
Sbjct: 16 GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70
Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC------ 260
+DYS ++ ++ P+ + D+ +L F S+S D V +
Sbjct: 71 VDYSSVVVAAMQA---CYAHVPQLRW--ETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125
Query: 261 --WSSPSTGVAEISRVL-------RPGGVFVGTTY 286
W+ S GV + +VL PGG F+ T
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-13
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
+ +V+G P + + G I+ + G G + A G V A+D S
Sbjct: 8 QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TG 267
L + + Q++ V+++++ + + + + +I C S
Sbjct: 61 SVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGI---VSIFCHLPSSLRQQL 113
Query: 268 VAEISRVLRPGGVFVGTTY 286
++ + L+PGGVF+ +
Sbjct: 114 YPKVYQGLKPGGVFILEGF 132
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-13
Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 24/170 (14%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
+ N D CG G + + +++ +D ++ML++ P NF
Sbjct: 29 VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA------ADRLPNTNF 82
Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
+AD++ A D ++A A ++++ L GGV
Sbjct: 83 --GKADLATWKPA-QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP---DNL 136
Query: 293 NLIPFSRLLRQNMMQ----------ISGSYTFLSEREIEDLCRACGL-VD 331
P + + + + VD
Sbjct: 137 QE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVD 185
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 5e-13
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 18/176 (10%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
++ +D G G ++ LF V +D +E+ L Q ++ +E
Sbjct: 69 RFLREGPNKTGTSCALDCGAGIGRITKRLL-LPLFREVDMVDITEDFLVQAKTYLGEEGK 127
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
+ S D + I + + + LRP G+ V
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
Query: 285 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 340
+ L S + + + GL R
Sbjct: 185 DNMAQEGVILDDV------------DSSVCRDLDVVRRIICSAGLSLLAEERQENL 228
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 4e-12
Identities = 34/203 (16%), Positives = 57/203 (28%), Gaps = 27/203 (13%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES 225
++ +L+P G + CG S + +V +DY L +
Sbjct: 110 RALQRHLRP--GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167
Query: 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFV 282
L R D +L D + + + + L+PGG V
Sbjct: 168 --LAGQITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
Query: 283 GTTYIVDGPFNLIPFSRLLRQNMMQ-------------ISGSYT-FLSEREIEDLCRACG 328
T + P L P S Q + I + + + G
Sbjct: 225 --TSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAG 282
Query: 329 LVDFKCTRNRG--FVMFTATKPS 349
D + +R F A KP+
Sbjct: 283 FTDLRFEDDRARLFPTVIARKPA 305
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-12
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 15/166 (9%)
Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
M E + + E+++ +K V G +D CG+G S A +G
Sbjct: 3 MVIRDENYFTDKYELTRTHS-----EVLE-AVKVVKPGKTLDLGCGNGRNSLYLAANGYD 56
Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
V A D + + E N + D++ L F D + + +
Sbjct: 57 --VDAWDKNAMSIANVERIKSIE-NLDNLHT--RVVDLNNLTF-DRQYDFILSTVVLMFL 110
Query: 262 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQN 304
+ +A + R +PGG + + + + F ++
Sbjct: 111 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG 156
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
+ + ++P G I D CG+G + + A + V +D SE ML+ E
Sbjct: 21 PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75
Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG 279
+ + D+ L +++ + + +R+L GG
Sbjct: 76 ET----NRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG 131
Query: 280 VFV 282
+
Sbjct: 132 KLL 134
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
+K + + ++ + +D +CG+G + A+D S+ ML +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAENK 78
Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 276
+ + L DIS L + D + + + +S L+
Sbjct: 79 FRSQ----GLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133
Query: 277 PGGVFV 282
GGVF+
Sbjct: 134 EGGVFI 139
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 1e-10
Identities = 17/164 (10%), Positives = 43/164 (26%), Gaps = 19/164 (11%)
Query: 180 NIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233
I+ G+G G+ ++ S + + E V + SN F
Sbjct: 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114
Query: 234 LVRADISRL------PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287
+ S D +H ++ + +L +
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174
Query: 288 VDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329
++ + + Q+ +++ ++ + GL
Sbjct: 175 GSSGWDKLWKKYGSRFPQD-----DLCQYITSDDLTQMLDNLGL 213
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-10
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225
+ +K ++K G ++DA+CG+G + A G V D + + + + +
Sbjct: 14 DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71
Query: 226 NFPKENFLLVRADI-SRLPFASSSIDAVHAGAAIHCW---------SSPSTGVAEISRVL 275
+ L++ + + + AV + +++ +L
Sbjct: 72 L--IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129
Query: 276 RPGGVFVGTTY 286
GG+ Y
Sbjct: 130 VTGGIITVVIY 140
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
G +++ + G G + F G V AL+ S ++L + + + ++ LV+
Sbjct: 83 SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140
Query: 238 DISRLPF---------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
D+S +S SI+ + + A + L PGG F+
Sbjct: 141 DMSAFALDKRFGTVVISSGSINELDEADRRGLY-------ASVREHLEPGGKFL 187
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-10
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 163 EKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
+ E + ++ K ++D +CG+G+ + A+ G VV LD E ML+
Sbjct: 24 KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARR 81
Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GAAIHCWSSPS--TGVAEISRVLR 276
++ ++ D+ + F + DAV + I + ++++ L+
Sbjct: 82 KAKER----NLKIEFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK 136
Query: 277 PGGVFV 282
PGGVF+
Sbjct: 137 PGGVFI 142
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 31/171 (18%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR- 236
++D C SG ++G + V ++ +Q KE V
Sbjct: 33 WKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQA-----------KEKLDHVVL 79
Query: 237 --ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 294
+ +P+ D V G + P + ++ ++ GV + + P N+
Sbjct: 80 GDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI-----P-NV 133
Query: 295 IPFSRLLR----QNMMQISGSYT-----FLSEREIEDLCRACGLVDFKCTR 336
S L G F + E+ + G K R
Sbjct: 134 SHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-10
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 21/150 (14%)
Query: 146 YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 199
+E+ W + V E+ + + + +ID +CG+G ++ ++
Sbjct: 19 WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76
Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA-----VHA 254
F V+ LD S++ L+ N D A+ ++
Sbjct: 77 FFPRVIGLDVSKSALEIA------AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130
Query: 255 GAAIHCWSSP--STGVAEISRVLRPGGVFV 282
H + +L G
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-10
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)
Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196
+ + +++ ++ + + G L+ ++D +CG+G+ S +
Sbjct: 22 YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76
Query: 197 KSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLP---FASSSIDAV 252
+ G V ++D S+ MLK + + +++ A+ L A DAV
Sbjct: 77 EEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134
Query: 253 -HAGAAIHCWSSPSTG-------VAEISRVLRPGGVFV 282
G + + I+ ++RPGG+ V
Sbjct: 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-10
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
+L++ +++D +CG+G F K L+ SE+ML +
Sbjct: 32 DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARK------R 81
Query: 227 FPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVFV 282
P + D+ AV +++ + VA + L PGGV V
Sbjct: 82 LPDATL--HQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
Query: 283 GTTYIVDGPFN 293
+ F
Sbjct: 139 VEPWWFPETFA 149
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-09
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPK 229
LK V +ID CG G + K F + +D S ++L++ + ++ + +
Sbjct: 24 VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83
Query: 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
+ L ++ + S DA I + RP V V T
Sbjct: 84 KRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
+ + L ++DA+ G+G + A GL V A D E L + + +
Sbjct: 14 DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDLG- 68
Query: 227 FPKENFLLVRADISRLP-FASSSIDAVHA------GAAIHCWSSPSTGVAEIS---RVLR 276
EN L+ L + I A A + P T + I L
Sbjct: 69 --IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE 126
Query: 277 PGGVFVGTTY 286
GG Y
Sbjct: 127 VGGRLAIMIY 136
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-09
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 25/132 (18%)
Query: 152 QNFVWGGFPGPEKEFELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
+ F P + + + L+ + D CG + + + V D
Sbjct: 41 RGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASS-----IRNPVHCFD-- 93
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
+ + D++++P S+D ++ ++ + E
Sbjct: 94 ----------------LASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEE 136
Query: 271 ISRVLRPGGVFV 282
+RVL+PGG+
Sbjct: 137 ANRVLKPGGLLK 148
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 17/137 (12%)
Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
+E + ++ +++D +CG+G+ R A S V L+ S +ML
Sbjct: 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARR- 90
Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 276
P D+ AV ++I + + + + +
Sbjct: 91 -----RNPDAVL--HHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVL 142
Query: 277 PGGVFVGTTYIVDGPFN 293
P GV V + F
Sbjct: 143 PDGVVVVEPWWFPENFT 159
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 14/185 (7%)
Query: 130 MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
+ R+ +S ++ + + K + ++D
Sbjct: 69 FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128
Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245
CG G S + G V + D++EN + E ++E N DI+
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI- 181
Query: 246 SSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGG-VFVGTTYIVDGPFNLIPFSRLLR 302
+ D + + + + + GG + D +PFS
Sbjct: 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFA 241
Query: 303 QNMMQ 307
+N ++
Sbjct: 242 ENELK 246
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-09
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
L++ Y K G +++D CG G + ++G +D +E + +
Sbjct: 57 LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVG 283
K F + R D + + + H S I+R LRPGG F+
Sbjct: 114 FKVFFR-AQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
Query: 284 TTYIVDGPFNLIP 296
T D
Sbjct: 173 TVPSRDVILERYK 185
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 5e-09
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 10/118 (8%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSEN------MLKQCYEFVQQES 225
+KP G I++ CG G S + A G V +D + L Q + +
Sbjct: 41 VKP--GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98
Query: 226 NFPKENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ L P A D V ++ ++S + +
Sbjct: 99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-09
Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
++S + + + WR + E+ +L++ L N ++ C
Sbjct: 6 TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61
Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247
+G F+ A + +D + + + + DI + +
Sbjct: 62 AGAFTEKLAPHC--KRLTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQFS-TAE 113
Query: 248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG-VFVGT 284
D + ++ + T + + ++L PGG + G+
Sbjct: 114 LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 33/214 (15%), Positives = 55/214 (25%), Gaps = 51/214 (23%)
Query: 144 FIYERGWRQNFV-WGGFPGPEKEFEL--------MKGYLKPVLGGNIIDASCGSGLFSRI 194
G ++ E G P ++DA CG G +
Sbjct: 77 DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGP--DDTLVDAGCGRGGSMVM 134
Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254
+ V + S ++ + ++ PF ++ A
Sbjct: 135 AHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRV--CNMLDTPFDKGAVTAS-- 189
Query: 255 GAAIHCWSSPSTGVA-------EISRVLRPGGVFVGTTYIVDGPF--------------- 292
W++ ST E SR L+ GG +V T + +
Sbjct: 190 ------WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE 243
Query: 293 -NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325
N+ LR M + L I DL
Sbjct: 244 CNIHSRREYLR--AMADNR----LVPHTIVDLTP 271
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-- 229
LK +ID CG G +I K F + +D S L+ E + +
Sbjct: 24 ALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQW 83
Query: 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
E L++ ++ DA I + +P V V T
Sbjct: 84 ERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 4e-08
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 27/177 (15%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
Y K ++D CG G F + + G+ + +D +E+M+K C
Sbjct: 30 ARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE--SIGVDINEDMIKFC------ 79
Query: 224 ESNFPKENFLLVRADISR--LPFASSSIDAVHAGAAI-HCWS-SPSTGVAEISRVLRPGG 279
+ F +V++D +D V + H ++ ++
Sbjct: 80 -----EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSS 134
Query: 280 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 336
V + P N P S N + ++ + G D K
Sbjct: 135 YIVIES-----P-N--PTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 7e-08
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Query: 166 FELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-V 221
+L K L ++G ID G G A + + + +D + L + +
Sbjct: 10 VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69
Query: 222 QQESNFPKENFLLVRADISRLPFA-SSSIDAVHA----GAAIHCWSSPSTGV-AEISRVL 275
++ S N + V A LPF + D++ G + P+ + + ++ +
Sbjct: 70 KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129
Query: 276 RPGGVFVGTT 285
+ F T
Sbjct: 130 KKEAHFEFVT 139
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-08
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 12/153 (7%)
Query: 150 WRQNFV-W-GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL 207
W + W G P + L G + CG G A F VV L
Sbjct: 40 WEEEITPWDQGRATPLIVHLVDTSSLPL---GRALVPGCGGGHDVVAMASPERF--VVGL 94
Query: 208 DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--S 265
D SE+ L + E S+ E F V+ D+ + D +
Sbjct: 95 DISESALAKANE--TYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRP 151
Query: 266 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298
+ +L+P G + Y + P+
Sbjct: 152 AWAKSMYELLKPDGELITLMYPITDHVGGPPYK 184
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 2e-07
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK 229
K +L ++ G+G + +L+VA D + + + E + ++ K
Sbjct: 41 KTFLDDSNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIK 99
Query: 230 ENFLLVRADIS-----------RLPFASSSIDAVHAGAAIH-CWSSP--STGVAEISRVL 275
+ R F + + AIH + +T + +S +
Sbjct: 100 TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT 159
Query: 276 RPGGVFVGTTY 286
GG + TT
Sbjct: 160 ASGGKVLITTM 170
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-07
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
+++ ++D CGSG ++ +D S L + + + + N
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC 775
Query: 231 NFL---LVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
N L I +D I ++ + P + V T
Sbjct: 776 NVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-06
Identities = 21/226 (9%), Positives = 57/226 (25%), Gaps = 37/226 (16%)
Query: 123 SKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNII 182
S++Y + + +F ++ +++ + GN++
Sbjct: 5 SRNYDQEIKDTAGH--KYAYNFDFDVMHP---------------FMVRAFTPFFRPGNLL 47
Query: 183 DASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242
+ G F+ + + + ++ SE + K+ + +
Sbjct: 48 ELGSFKGDFTSRLQEHF--NDITCVEASEEAISHA-------QGRLKDGITYIHSRFEDA 98
Query: 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 301
D + + P + I L GG + I +
Sbjct: 99 QL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 157
Query: 302 RQNMMQISGSYT------FLSEREIEDLCRACGLVDFKCTRNRGFV 341
+ ++ + + +E G + T G
Sbjct: 158 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAG---LQVTYRSGIF 200
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 4e-05
Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 10/118 (8%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
+ E G + G + G + I V ++ ++ + + ++
Sbjct: 112 KNEAALGRFRR--GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL 169
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ ++ D + + D + A I R + +
Sbjct: 170 ---GVDGVNVITGDETVIDGLE--FDVLMVAALA---EPKRRVFRNIHRYVDTETRII 219
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-05
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 163 EKEFELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALD-YSENMLKQCY 218
++ E + + ++D G G A+ LVVALD M K
Sbjct: 10 KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA 69
Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW---------SSPSTGVA 269
+ + + N L + A RLP S + +H + W SSP +
Sbjct: 70 KAAAKPAKGGLPNLLYLWATAERLP-PLSGVGELHV---LMPWGSLLRGVLGSSPEM-LR 124
Query: 270 EISRVLRPGGVFVGTT 285
++ V RPG F+
Sbjct: 125 GMAAVCRPGASFLVAL 140
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
+KP G I+D GSG +A+ G+ +D S Q ++ + +
Sbjct: 34 MKP--GTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRAEELGVSERVH 89
Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291
F+ D + A+ D A + +++ L+PGG+ + I +
Sbjct: 90 FIH--NDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML----IGEPY 142
Query: 292 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330
+ +P + + Q S S FL+ + G
Sbjct: 143 WRQLPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGYD 180
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 33/231 (14%), Positives = 58/231 (25%), Gaps = 47/231 (20%)
Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
P + W + F + +L L G I+D CG+G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG 234
Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
+ + VV +D S + V+ + + +
Sbjct: 235 VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRF 293
Query: 250 DAV------HAGAAIHCWSSPSTG---VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
+AV H A+ + R L+ G YIV
Sbjct: 294 NAVLCNPPFHQQHALT----DNVAWEMFHHARRCLKINGEL----YIV------------ 333
Query: 301 LRQNMMQISGSYTFLS-EREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ 350
+ L +++ + C + N FV+ A K
Sbjct: 334 ----------ANRHLDYFHKLKKIFGNCTTI----ATNNKFVVLKAVKLEH 370
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 22/199 (11%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLV--VALDYSENMLKQCYEFVQQE 224
L + ++ N+ D C G + ++ V + +D S+ M+++C + +
Sbjct: 50 MLAERFVTA--DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY 107
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
+ + ++ DI + ++S+ ++ + +I L P GV V +
Sbjct: 108 HS--EIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 165
Query: 285 TYIVDGPFNLIP--------------FSRLLRQNMMQ-ISGSYTFLSEREIEDLCRACGL 329
+ +S L + S + + G
Sbjct: 166 EKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGF 225
Query: 330 VDFKC-TRNRGFVMFTATK 347
+ + F A K
Sbjct: 226 SQVELWFQCFNFGSMIAVK 244
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 82/254 (32%)
Query: 124 KDYGELMSPATEFFRMPFM---SFIYERG--WRQN--FVWGGFPGPEKEFEL-------- 168
+Y LMSP R P M +I +R + N F + +L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 169 ---------MKGYLKPVLGGNII-DASCGSGLFSRIF-AKSG-----------LFSLVVA 206
+ G K + ++ + +IF L L+
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 207 L--------DYSENMLKQCYEFVQQE-SNF----PKENFLLVRADISRLPFASSSIDAVH 253
+ D+S N +K +Q E P EN LLV ++ + + +A
Sbjct: 209 IDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAF- 262
Query: 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313
+ C ++L + T + + + + ++ S + T
Sbjct: 263 ---NLSC------------KIL------LTTRFK--QVTDFLSAATTTHISLDHHSMTLT 299
Query: 314 FLSEREIEDLCRAC 327
E++ L
Sbjct: 300 ---PDEVKSLLLKY 310
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.92 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.91 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.91 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.9 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.9 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.9 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.9 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.89 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.89 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.88 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.88 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.88 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.88 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.87 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.87 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.87 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.87 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.87 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.86 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.86 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.86 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.86 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.86 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.86 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.85 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.85 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.85 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.85 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.85 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.85 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.84 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.84 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.84 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.84 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.84 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.84 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.84 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.84 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.84 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.84 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.84 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.83 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.83 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.83 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.83 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.82 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.82 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.82 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.82 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.82 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.82 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.82 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.82 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.82 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.82 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.81 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.81 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.81 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.81 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.81 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.8 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.8 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.8 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.8 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.8 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.8 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.79 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.79 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.79 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.78 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.78 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.75 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.75 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.75 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.75 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.73 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.73 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.72 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.72 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.72 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.72 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.72 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.7 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.7 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.7 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.7 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.7 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.7 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.7 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.69 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.69 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.69 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.69 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.69 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.69 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.68 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.66 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.66 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.66 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.66 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.66 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.65 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.64 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.64 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.63 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.62 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.62 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.62 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.62 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.61 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.61 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.61 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.61 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.6 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.6 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.59 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.59 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.59 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.58 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.58 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.58 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.58 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.57 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.57 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.57 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.57 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.56 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.56 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.56 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.55 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.55 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.55 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.54 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.54 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.54 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.54 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.53 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.53 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.53 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.53 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.53 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.52 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.51 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.51 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.5 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.49 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.48 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.48 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.47 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.47 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.47 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.47 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.47 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.47 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.47 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.47 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.45 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.45 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.45 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.44 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.44 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.44 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.44 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.43 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.43 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.42 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.42 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.42 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.4 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.39 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.38 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.38 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.38 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.37 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.37 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.36 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.36 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.36 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.35 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.35 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.35 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.35 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.32 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.31 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.31 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.3 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.3 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.27 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.24 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.23 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.22 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.22 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.21 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.2 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.2 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.19 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.16 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.13 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.1 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.06 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.06 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.06 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.05 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.0 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.99 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.99 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.99 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.96 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.94 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.85 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.85 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.85 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.84 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.83 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.82 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.81 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.77 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.76 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.74 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.72 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.65 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.64 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.6 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.59 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.57 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.53 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.49 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.34 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.29 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.28 | |
| 2jny_A | 67 | Uncharacterized BCR; structure, CGR1, NESG, struct | 98.25 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.23 | |
| 2jr6_A | 68 | UPF0434 protein NMA0874; solution, structural geno | 98.22 | |
| 2js4_A | 70 | UPF0434 protein BB2007; NESG, northeast structural | 98.19 | |
| 2pk7_A | 69 | Uncharacterized protein; NESG, PLR1, putative tetr | 98.17 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.17 | |
| 2hf1_A | 68 | Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A | 98.17 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.16 | |
| 2kpi_A | 56 | Uncharacterized protein SCO3027; zinc finger, PSI- | 98.03 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.02 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.01 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.0 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.96 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.89 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.85 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.84 | |
| 2k5r_A | 97 | Uncharacterized protein XF2673; solution structure | 97.84 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.81 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.74 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.5 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.4 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.38 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.36 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.21 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.77 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.55 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.13 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.84 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.58 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.55 | |
| 1pft_A | 50 | TFIIB, PFTFIIBN; N-terminal domain, transcription | 95.39 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.35 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.33 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.23 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.03 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.98 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.84 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.83 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.72 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.7 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.49 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.27 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.2 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.09 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.03 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.01 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.94 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.83 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.76 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.46 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.36 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.35 | |
| 1dl6_A | 58 | Transcription factor II B (TFIIB); zinc ribbon, ge | 93.32 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.3 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.13 | |
| 3q87_A | 125 | Putative uncharacterized protein ECU08_1170; SAM-m | 93.11 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.92 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.87 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.84 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.81 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 92.61 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.61 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.58 | |
| 3j20_Y | 50 | 30S ribosomal protein S27AE; archaea, archaeal, KI | 92.56 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.56 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.52 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.48 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.44 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.26 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.21 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.11 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.1 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.0 | |
| 2jne_A | 101 | Hypothetical protein YFGJ; zinc fingers, two zinc, | 91.99 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.99 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.92 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.89 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.76 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.62 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.52 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.27 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.27 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.24 | |
| 2k5c_A | 95 | Uncharacterized protein PF0385; structural genomic | 91.03 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.98 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 90.93 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.92 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.9 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.6 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.35 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.18 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.84 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.74 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.73 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.58 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.48 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.41 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.4 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.38 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.28 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.2 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.12 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.06 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.04 | |
| 1vq8_Z | 83 | 50S ribosomal protein L37AE; ribosome 50S, protein | 88.99 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 88.65 | |
| 3h0g_L | 63 | DNA-directed RNA polymerases I, II, and III subuni | 88.37 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 88.24 | |
| 2jrp_A | 81 | Putative cytoplasmic protein; two-zinc binding pro | 88.22 | |
| 1qyp_A | 57 | RNA polymerase II; transcription, RPB9, Zn ribbon, | 88.14 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 88.12 | |
| 2j6a_A | 141 | Protein TRM112; translation termination, methyltra | 87.95 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 87.89 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.7 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 87.62 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.48 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 87.47 | |
| 1twf_L | 70 | ABC10-alpha, DNA-directed RNA polymerases I, II, a | 87.46 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 87.39 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 87.13 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 86.86 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 86.64 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 86.46 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 86.32 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.11 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.01 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 85.63 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.19 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.13 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.04 | |
| 3po3_S | 178 | Transcription elongation factor S-II; RNA polymera | 85.01 | |
| 2k4x_A | 55 | 30S ribosomal protein S27AE; metal-binding, ribonu | 84.88 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 84.79 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 84.52 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.51 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 84.41 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 84.27 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.24 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.19 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 83.98 | |
| 1pqv_S | 309 | STP-alpha, transcription elongation factor S-II, D | 83.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 83.87 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 83.71 | |
| 1tfi_A | 50 | Transcriptional elongation factor SII; transcripti | 83.67 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 83.08 | |
| 2akl_A | 138 | PHNA-like protein PA0128; two domains, Zn binding | 82.51 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 82.47 | |
| 1gh9_A | 71 | 8.3 kDa protein (gene MTH1184); beta+alpha complex | 82.26 | |
| 3j21_g | 51 | 50S ribosomal protein L40E; archaea, archaeal, KIN | 82.03 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 81.97 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 81.87 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 81.74 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 81.71 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 81.5 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 81.47 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.46 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 80.54 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 80.09 |
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=214.85 Aligned_cols=171 Identities=12% Similarity=0.144 Sum_probs=129.6
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++ +.......+...+...++
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK-----GIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT-----TCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc-----CCCcceeeechhhHhhcc
Confidence 3455667777777788999999999999999999876 999999999999999875 110111112234445566
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
+++++||+|++.+++||++|+..+|++++++|||||++++.+++... . ............|..+++.+++.++
T Consensus 167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~-~~~~~~~~~~~~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------I-VAKTSFDQIFDEHFFLFSATSVQGM 239 (416)
T ss_dssp HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------H-HHHTCGGGCSTTCCEECCHHHHHHH
T ss_pred cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------h-hhhcchhhhhhhhhhcCCHHHHHHH
Confidence 77889999999999999999999999999999999999998876421 1 0011111113457889999999999
Q ss_pred HHHCCCeEEEEEe----cCeEEEEEEecC
Q 018740 324 CRACGLVDFKCTR----NRGFVMFTATKP 348 (351)
Q Consensus 324 l~~aGf~~v~~~~----~g~~~~~~a~kp 348 (351)
++++||++++... .|.+.++.+++.
T Consensus 240 l~~aGf~~~~~~~~~~~~g~l~~~~~~~~ 268 (416)
T 4e2x_A 240 AQRCGFELVDVQRLPVHGGEVRYTLARQG 268 (416)
T ss_dssp HHHTTEEEEEEEEECGGGSEEEEEEEETT
T ss_pred HHHcCCEEEEEEEccCCCCEEEEEEEeCC
Confidence 9999999988654 566666666553
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=185.88 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=128.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
.++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++++... +. ..+++++++|+.++|+ +.||+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-~~-~~~v~~~~~D~~~~~~--~~~d~v~ 144 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KA-PTPVDVIEGDIRDIAI--ENASMVV 144 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-CC-SSCEEEEESCTTTCCC--CSEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-cc-CceEEEeecccccccc--cccccce
Confidence 458899999999999999999874 3568999999999999999998765 21 4689999999999886 4699999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---c------------cCCccCCC
Q 018740 254 AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I------------SGSYTFLS 316 (351)
Q Consensus 254 ~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~s 316 (351)
++.++||++++ ..+|++++++|||||++++.+...................+.. + ......++
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 99999999765 4789999999999999999887653211111111111110000 0 11234568
Q ss_pred HHHHHHHHHHCCCeEEEEEe-cCeEEEEEEecCCC
Q 018740 317 EREIEDLCRACGLVDFKCTR-NRGFVMFTATKPSQ 350 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~~-~g~~~~~~a~kp~~ 350 (351)
.+++.++|+++||+.++.+. ...+..++|.|+.+
T Consensus 225 ~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~~ 259 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 259 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcCC
Confidence 89999999999999988653 44567788999875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=179.54 Aligned_cols=181 Identities=15% Similarity=0.220 Sum_probs=138.8
Q ss_pred HHHHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 164 KEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
...+.+...+. ..++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++... .++.++++|+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~ 104 (234)
T 3dtn_A 30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTC
T ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhcc
Confidence 33455556554 45678999999999999999999977779999999999999999987654 3899999999999
Q ss_pred CCCCCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH--------------h
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--------------M 306 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~--------------~ 306 (351)
+++ ++||+|++..+++|++++. .+++++.++|||||.+++.++...............+... .
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGY 183 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC
T ss_pred CCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 876 8999999999999998776 5999999999999999999987643211111111111111 0
Q ss_pred hccCCccCCCHHHHHHHHHHCCCeEEEEE-ecCeEEEEEEecCCC
Q 018740 307 QISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPSQ 350 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~ll~~aGf~~v~~~-~~g~~~~~~a~kp~~ 350 (351)
....+...++.+++.++|+++||+++++. ....+.++.+.|+++
T Consensus 184 ~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~ 228 (234)
T 3dtn_A 184 ERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEG 228 (234)
T ss_dssp ----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC--
T ss_pred HhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEeccc
Confidence 11235567899999999999999999854 456678888888874
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=177.88 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=138.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+...+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.+++++... + ..++.++.+|+.+++++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL-G--LKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-T--CTTEEEEECBTTBCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEecccccCCCC
Confidence 345555666678899999999999999999885 5569999999999999999998776 2 35899999999999988
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|++..+++|++++..+++++.++|+|||.+++.++....... ...+..+++.+++.++++
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~ 169 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK--------------GPPPEEVYSEWEVGLILE 169 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS--------------SCCGGGSCCHHHHHHHHH
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc--------------CCchhcccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999887643211 122445789999999999
Q ss_pred HCCCeEEEEEe-cCeEEEEEEecCC
Q 018740 326 ACGLVDFKCTR-NRGFVMFTATKPS 349 (351)
Q Consensus 326 ~aGf~~v~~~~-~g~~~~~~a~kp~ 349 (351)
++||++++... .+....+.++|+.
T Consensus 170 ~~Gf~~~~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 170 DAGIRVGRVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp HTTCEEEEEEEETTTEEEEEEECC-
T ss_pred HCCCEEEEEEeeCCceEEEEEEecc
Confidence 99999988554 4567777788875
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=184.88 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=131.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...++.+|||||||+|.++..+++.++ +|+|+|+|+.|++.+++++... + .+++.++.+|+.++|++
T Consensus 26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~-~--~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN-G--HQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhc-C--CCceEEEEecHHhCCCC
Confidence 34566666667788999999999999999999886 9999999999999999988765 2 36899999999999999
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~l~~l 323 (351)
+++||+|++..+++|++|+..+|+++.++|||||++++.++..... +....+..... ....+..+++.+++.++
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVEKERDYSHHRAWKKSDWLKM 176 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999987765321 22222221111 12345678899999999
Q ss_pred HHHCCCeEEEEEe
Q 018740 324 CRACGLVDFKCTR 336 (351)
Q Consensus 324 l~~aGf~~v~~~~ 336 (351)
|+++||+++....
T Consensus 177 l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 177 LEEAGFELEELHC 189 (260)
T ss_dssp HHHHTCEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 9999999877543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=177.11 Aligned_cols=178 Identities=17% Similarity=0.253 Sum_probs=137.8
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+...++ +|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++... +. ..++.++++|+.+++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~ 106 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA-NL-NDRIQIVQGDVHNIP 106 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECBTTBCS
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc-cc-cCceEEEEcCHHHCC
Confidence 345566666665555 9999999999999999998 4569999999999999999998776 22 358999999999999
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--------ccCCccCC
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--------ISGSYTFL 315 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 315 (351)
+++++||+|++..+++|++++..+++++.++|+|||.+++.++..+. ............ ...+..++
T Consensus 107 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T 3dlc_A 107 IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK-----ELRDSISAEMIRKNPDWKEFNRKNISQE 181 (219)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH-----HHHHHHHHHHHHHCTTHHHHHHHHSSHH
T ss_pred CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH-----HHHHHHHHHHHHhHHHHHhhhhhccccC
Confidence 98999999999999999999999999999999999999998755421 111111111100 11244566
Q ss_pred CHHHHHHHHHHCCCeEEEEEecCeEEEEEEecCCC
Q 018740 316 SEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ 350 (351)
Q Consensus 316 s~~~l~~ll~~aGf~~v~~~~~g~~~~~~a~kp~~ 350 (351)
+.+++.++|+++||++++........++..+|+.+
T Consensus 182 ~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~~~ 216 (219)
T 3dlc_A 182 NVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQ 216 (219)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEETTEEEEEEBCCSC
T ss_pred CHHHHHHHHHHcCCCeEEEEecCCceEEEEecccc
Confidence 88999999999999998877655555555666653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=180.64 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=133.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+...+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++. .++.++.+|+.+++++ ++
T Consensus 37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~~ 106 (220)
T 3hnr_A 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-TS 106 (220)
T ss_dssp HHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-SC
T ss_pred HHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-CC
Confidence 33333344678999999999999999999865 99999999999999998732 3788999999999887 89
Q ss_pred eeeEEeccccccCCChHH--HHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH----hhccCCccCCCHHHHHH
Q 018740 249 IDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQISGSYTFLSEREIED 322 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~--~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~l~~ 322 (351)
||+|++..+++|++++.. +|+++.++|||||.+++.++................... ........+++.+++.+
T Consensus 107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (220)
T 3hnr_A 107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT 186 (220)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH
T ss_pred eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHH
Confidence 999999999999999977 999999999999999999877543211111111110000 01111235679999999
Q ss_pred HHHHCCCeEEEEEecCeEEEEEEecCC
Q 018740 323 LCRACGLVDFKCTRNRGFVMFTATKPS 349 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g~~~~~~a~kp~ 349 (351)
+++++||+++.....+..+++.++|+.
T Consensus 187 ~l~~aGf~v~~~~~~~~~w~~~~~~~~ 213 (220)
T 3hnr_A 187 IFENNGFHVTFTRLNHFVWVMEATKQL 213 (220)
T ss_dssp HHHHTTEEEEEEECSSSEEEEEEEECS
T ss_pred HHHHCCCEEEEeeccceEEEEeehhhh
Confidence 999999999888888888888888875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=177.03 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=134.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++... |. ..++.++.+|+.++|++
T Consensus 50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA-GL-ANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc-CC-CcceEEEECccccCCCC
Confidence 4566677777778999999999999999999874 459999999999999999988765 22 35799999999999998
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|++..+++|++++..+|+++.++|||||.+++.++...... ..........+.....+..+++.+++.++++
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 204 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPV--EGAKKEAVDAFRAGGGVLSLGGIDEYESDVR 204 (273)
T ss_dssp TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCC--CHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCC--ChhHHHHHHHHHhhcCccCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999998764321 1111111111111223556889999999999
Q ss_pred HCCCeEEEEEec
Q 018740 326 ACGLVDFKCTRN 337 (351)
Q Consensus 326 ~aGf~~v~~~~~ 337 (351)
++||++++....
T Consensus 205 ~aGf~~~~~~~~ 216 (273)
T 3bus_A 205 QAELVVTSTVDI 216 (273)
T ss_dssp HTTCEEEEEEEC
T ss_pred HcCCeEEEEEEC
Confidence 999999876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=175.54 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=133.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++... + ..++.++.+|+..+|+++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK-G--VENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH-T--CCSEEEEECBTTBCCSCT
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc-C--CCCeEEEecccccCCCCC
Confidence 4556666777889999999999999999999886 9999999999999999988776 2 368999999999999988
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~l~~ll 324 (351)
++||+|++..+++|++++..+++++.++|+|||.+++.++..... +....+..... ....+...++.+++.++|
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 161 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNHLNRLRDPSHVRESSLSEWQAMF 161 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHH
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHHHHHHHhccccccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999988765422 22222222111 123466788999999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||.+++...
T Consensus 162 ~~aGf~~~~~~~ 173 (239)
T 1xxl_A 162 SANQLAYQDIQK 173 (239)
T ss_dssp HHTTEEEEEEEE
T ss_pred HHCCCcEEEEEe
Confidence 999999877543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=177.50 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=131.8
Q ss_pred HHHHHHhcc----CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 165 EFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 165 ~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
..+.+...+ ...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++... |. ..++.++.+|+.
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~ 142 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA-GL-ADNITVKYGSFL 142 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH-TC-TTTEEEEECCTT
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhc-CC-CcceEEEEcCcc
Confidence 345566666 66678899999999999999999873 239999999999999999988765 22 367999999999
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
++|+++++||+|++..+++|++++..+|+++.++|||||.+++.++......... ....+.... ....+.+.+++
T Consensus 143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~ 217 (297)
T 2o57_A 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKS-SIQPILDRI----KLHDMGSLGLY 217 (297)
T ss_dssp SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG-GGHHHHHHH----TCSSCCCHHHH
T ss_pred cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchH-HHHHHHHHh----cCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999998765432221 122221111 12346799999
Q ss_pred HHHHHHCCCeEEEEEe
Q 018740 321 EDLCRACGLVDFKCTR 336 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~ 336 (351)
.++++++||++++...
T Consensus 218 ~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 218 RSLAKECGLVTLRTFS 233 (297)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 9999999999988654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=176.41 Aligned_cols=163 Identities=16% Similarity=0.188 Sum_probs=133.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... .++.++.+|+.++
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccC
Confidence 4456677777777788899999999999999999974 349999999999999999874332 6899999999999
Q ss_pred CCCCCceeeEEeccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
|+++++||+|++..+++|+ .++..+++++.++|||||.+++.++............. ..... .+..+++.+++
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~ 189 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK---EYVKQ--RKYTLITVEEY 189 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHH---HHHHH--HTCCCCCHHHH
T ss_pred CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHH---HHHhc--CCCCCCCHHHH
Confidence 9889999999999999999 78899999999999999999999987654222222222 21111 25568899999
Q ss_pred HHHHHHCCCeEEEEEe
Q 018740 321 EDLCRACGLVDFKCTR 336 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~ 336 (351)
.++++++||++++...
T Consensus 190 ~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 190 ADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEEe
Confidence 9999999999988654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=175.15 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=133.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++... |. ..++.++++|+.++
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~-~~-~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL-GV-SERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEESCCTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-CC-CcceEEEECChHhC
Confidence 4456677777777788999999999999999999875 349999999999999999988765 22 35899999999998
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++ +++||+|++..+++|++++..+|++++++|||||.+++.++.......... +...+. ...+..+++.+++.+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE----IAQACG-VSSTSDFLTLPGLVG 172 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH----HHHTTT-CSCGGGSCCHHHHHH
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHH----HHHHHh-cccccccCCHHHHHH
Confidence 87 789999999999999999999999999999999999999876543221111 111111 223456889999999
Q ss_pred HHHHCCCeEEEEE
Q 018740 323 LCRACGLVDFKCT 335 (351)
Q Consensus 323 ll~~aGf~~v~~~ 335 (351)
+++++||++++..
T Consensus 173 ~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 173 AFDDLGYDVVEMV 185 (256)
T ss_dssp HHHTTTBCCCEEE
T ss_pred HHHHCCCeeEEEE
Confidence 9999999987754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=171.30 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=131.2
Q ss_pred cHHHHHHHHhcc-CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
.......+...+ ...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.+++++... |. ..++.++++|+.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~ 106 (257)
T 3f4k_A 30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKA-NC-ADRVKGITGSMD 106 (257)
T ss_dssp CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTT
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECChh
Confidence 344455566665 455678999999999999999999975 49999999999999999998776 22 345999999999
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
++|+++++||+|++..+++|+ ++..+++++.++|+|||++++.++..............+.. . ....++.+++
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~ 179 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD---A---YPEISVIPTC 179 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH---H---CTTCCBHHHH
T ss_pred hCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH---h---CCCCCCHHHH
Confidence 999889999999999999999 89999999999999999999999764332222222221211 1 2236789999
Q ss_pred HHHHHHCCCeEEEEEe
Q 018740 321 EDLCRACGLVDFKCTR 336 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~ 336 (351)
.++++++||++++...
T Consensus 180 ~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 180 IDKMERAGYTPTAHFI 195 (257)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 9999999999988553
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=173.48 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=131.6
Q ss_pred HHHHHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
......+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++... |. .+++.++.+|+.+
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS-GL-QNRVTGIVGSMDD 107 (267)
T ss_dssp HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTTS
T ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc-CC-CcCcEEEEcChhh
Confidence 444555666665 566889999999999999999998 4569999999999999999998776 22 3579999999999
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+|+++++||+|++..+++|+ ++..+++++.++|||||++++.++..............+. .. ...+.+.+++.
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 180 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM---DA---YPEIDTIPNQV 180 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHH---HH---CTTCEEHHHHH
T ss_pred CCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHH---Hh---CCCCCCHHHHH
Confidence 99888999999999999999 8999999999999999999999987533222222211111 11 22567899999
Q ss_pred HHHHHCCCeEEEEEe
Q 018740 322 DLCRACGLVDFKCTR 336 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~ 336 (351)
++++++||++++...
T Consensus 181 ~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 181 AKIHKAGYLPVATFI 195 (267)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999999988654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-21 Score=176.45 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=133.0
Q ss_pred HHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+.+. ..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++... |. ..++.++.+|+.++|
T Consensus 105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRAREL-RI-DDHVRSRVCNMLDTP 180 (312)
T ss_dssp HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTTSCC
T ss_pred HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHc-CC-CCceEEEECChhcCC
Confidence 345667776 667889999999999999999988 54 9999999999999999998876 22 357999999999999
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCC-CcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++++||+|++..+++|+ ++..+|+++.++|||||++++.++...... ........+...+ ...+++.+++.+
T Consensus 181 ~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~ 254 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF-----ECNIHSRREYLR 254 (312)
T ss_dssp CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH-----TCCCCBHHHHHH
T ss_pred CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh-----cCCCCCHHHHHH
Confidence 888999999999999999 699999999999999999999998776533 2233333332222 224789999999
Q ss_pred HHHHCCCeEEEEEec
Q 018740 323 LCRACGLVDFKCTRN 337 (351)
Q Consensus 323 ll~~aGf~~v~~~~~ 337 (351)
+++++||++++....
T Consensus 255 ~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 255 AMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHTTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEeC
Confidence 999999999886543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=174.90 Aligned_cols=167 Identities=20% Similarity=0.268 Sum_probs=132.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.......++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... ..+++.++.+|+..+++++
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~ 103 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNVKFLQANIFSLPFED 103 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGCCSCT
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCcEEEEcccccCCCCC
Confidence 4444555556788999999999999999999987789999999999999999998776 2468999999999999889
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCC--CcchHHHHHHHHHhh--ccCCccCCCHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQNMMQ--ISGSYTFLSEREIED 322 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~ 322 (351)
++||+|++..+++|++++..+++++.++|+|||++++.++...... +..+........... ...+...++.+++..
T Consensus 104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (276)
T 3mgg_A 104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYP 183 (276)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHH
T ss_pred CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 9999999999999999999999999999999999999887653221 112222222111111 122345567889999
Q ss_pred HHHHCCCeEEEEEe
Q 018740 323 LCRACGLVDFKCTR 336 (351)
Q Consensus 323 ll~~aGf~~v~~~~ 336 (351)
+|+++||++++...
T Consensus 184 ~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 184 LLQESGFEKIRVEP 197 (276)
T ss_dssp HHHHTTCEEEEEEE
T ss_pred HHHHCCCCeEEEee
Confidence 99999999988653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=176.05 Aligned_cols=176 Identities=22% Similarity=0.351 Sum_probs=128.5
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccCCCCC--ccccCccchhhhcCChhhhhhhhh
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKD--YGELMSPATEFFRMPFMSFIYERG 149 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~~ 149 (351)
+.||.|+..+.... +.++|++|+.++...+||++++....... ..+... .+.
T Consensus 3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~----~~~----------- 56 (269)
T 1p91_A 3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAE----MMQ----------- 56 (269)
T ss_dssp BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHH----HHH-----------
T ss_pred ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHH----HHH-----------
Confidence 78999999876533 57999999999999999999876533211 111100 100
Q ss_pred hhhhhhcCCCCCc--HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC
Q 018740 150 WRQNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227 (351)
Q Consensus 150 ~r~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~ 227 (351)
.+..+...+++.+ ....+.+...+. .++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~------- 128 (269)
T 1p91_A 57 ARRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR------- 128 (269)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-------
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-------
Confidence 0122222333221 122333444332 457799999999999999999985556999999999999999886
Q ss_pred CCCCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 228 ~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
..++.+..+|+.++|+++++||+|++..+.+ .++++.++|+|||.+++.++..+
T Consensus 129 -~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 129 -YPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp -CTTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred -CCCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence 4678999999999998889999999876633 48999999999999999998764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=170.65 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=118.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.|++++. .++.++++|+.++ +++++||+|++.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~~ 111 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLTH 111 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEhh
Confidence 467899999999999999999887 89999999999999998731 2799999999887 4678999999999
Q ss_pred ccccCCChHHHHHHHH-hcccCCcEEEEEeeccCCCCCcchHHHHHHHH---------HhhccCCccCCCHHHHHHHHHH
Q 018740 257 AIHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN---------MMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~-~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
++||++|+..+|+++. ++|||||.+++.+++.... .......... ......|..+++.+++.+++++
T Consensus 112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV---SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH---HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHH---HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 9999999999999999 9999999999999875421 0000000000 0012346678999999999999
Q ss_pred CCCeEEEEE
Q 018740 327 CGLVDFKCT 335 (351)
Q Consensus 327 aGf~~v~~~ 335 (351)
+||++++..
T Consensus 189 ~Gf~~~~~~ 197 (250)
T 2p7i_A 189 AGLQVTYRS 197 (250)
T ss_dssp TTCEEEEEE
T ss_pred CCCeEEEEe
Confidence 999988754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=170.47 Aligned_cols=156 Identities=20% Similarity=0.302 Sum_probs=127.6
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+...+. ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++. ...++.++++|+.++++
T Consensus 43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCSS
T ss_pred HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCCC
Confidence 3455666655 477999999999999999999865 9999999999999998863 14789999999999998
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
++++||+|++..+++|++++..+++++.++|+|||.+++.++..........+ ........+...++.+++.+++
T Consensus 113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l 187 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY-----PRLYGKDVVCNTMMPWEFEQLV 187 (242)
T ss_dssp CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG-----GGGGTCCCSSCCCCHHHHHHHH
T ss_pred CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh-----hhhccccccccCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999765432111111 1112233356778999999999
Q ss_pred HHCCCeEEEEE
Q 018740 325 RACGLVDFKCT 335 (351)
Q Consensus 325 ~~aGf~~v~~~ 335 (351)
+++||++++..
T Consensus 188 ~~~Gf~~~~~~ 198 (242)
T 3l8d_A 188 KEQGFKVVDGI 198 (242)
T ss_dssp HHTTEEEEEEE
T ss_pred HHcCCEEEEee
Confidence 99999998854
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=176.81 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=123.5
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++ .+++.+..+|+..+|+ ++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~ 116 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQN--------YPHLHFDVADARNFRV-DK 116 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHH--------CTTSCEEECCTTTCCC-SS
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhh--------CCCCEEEECChhhCCc-CC
Confidence 34455566678899999999999999999854 4999999999999999886 3678899999999987 57
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh-------hccCCccCCCHHHH
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM-------QISGSYTFLSEREI 320 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~l 320 (351)
+||+|++..+++|++|+..+++++.++|+|||++++.++..+.. ..+...+..... ....+..+++.+++
T Consensus 117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (279)
T 3ccf_A 117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNI---KYILEALYNALETLGIHNPQALNPWYFPSIGEY 193 (279)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTT---HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcch---HHHHHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence 89999999999999999999999999999999999988865421 122222221111 12234567899999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++|+++||++++..
T Consensus 194 ~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 194 VNILEKQGFDVTYAA 208 (279)
T ss_dssp HHHHHHHTEEEEEEE
T ss_pred HHHHHHcCCEEEEEE
Confidence 999999999988754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=167.39 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=119.2
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++ .+++.++++|+.++++++++||+|++..+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence 67999999999999999999866 999999999999999986 46899999999999988899999999999
Q ss_pred cccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
++|++ ++..+|+++.++|+|||.+++.++........ .....+..+++.+++.++++++||++++..
T Consensus 112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPM-----------YHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEE-----------CCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhh-----------hchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 99997 88999999999999999999999876532111 111224567899999999999999998855
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 181 ~ 181 (203)
T 3h2b_A 181 W 181 (203)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=175.85 Aligned_cols=162 Identities=16% Similarity=0.183 Sum_probs=124.2
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASS 247 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~ 247 (351)
+...+... +.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++... |. ..++.++.+|+.+++ +.++
T Consensus 61 ~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 61 VLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAK-GV-SDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHTCSS-CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC--CC-GGGEEEEESCGGGTGGGCSS
T ss_pred HHHhcCCC-CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CC-CcceEEEEcCHHHhhhhcCC
Confidence 33444433 67999999999999999999865 9999999999999999988765 21 268999999999987 7789
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh-------hccCCccCCCHHHH
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM-------QISGSYTFLSEREI 320 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~l 320 (351)
+||+|++..+++|++++..+++++.++|||||++++.+++.+...........+..... ....+..+++.+++
T Consensus 136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999998875321000000000000110 01224467899999
Q ss_pred HHHHHHCCCeEEEEE
Q 018740 321 EDLCRACGLVDFKCT 335 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~ 335 (351)
.++++++||++++..
T Consensus 216 ~~~l~~aGf~v~~~~ 230 (285)
T 4htf_A 216 YLWLEEAGWQIMGKT 230 (285)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCceeeee
Confidence 999999999998744
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-21 Score=174.66 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=131.1
Q ss_pred CCCCeEEEEcCccCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 176 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.+++++... +. ..++.++++|+.+++++ ++||+|++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-AL-AGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-TT-GGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEECchhcCCcc-CCeEEEEE
Confidence 457899999999999999985 4456679999999999999999998765 21 24599999999999887 89999999
Q ss_pred ccccccCCChHH---HHHHHHhcccCCcEEEEEeeccCCCCC-cc--------hHHHHHHH-HHhh--ccCCccCCCHHH
Q 018740 255 GAAIHCWSSPST---GVAEISRVLRPGGVFVGTTYIVDGPFN-LI--------PFSRLLRQ-NMMQ--ISGSYTFLSERE 319 (351)
Q Consensus 255 ~~vl~h~~d~~~---~l~~i~~~LkpgG~li~~~~~~~~~~~-~~--------~~~~~~~~-~~~~--~~~~~~~~s~~~ 319 (351)
..+++|++++.. +++++.++|||||++++.++....... .. +....... .+.. ......+++.++
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999999999975 799999999999999998866432110 01 10001111 1111 122235689999
Q ss_pred HHHHHHHCCCeEEEEE--ecCeEEEEEEecCC
Q 018740 320 IEDLCRACGLVDFKCT--RNRGFVMFTATKPS 349 (351)
Q Consensus 320 l~~ll~~aGf~~v~~~--~~g~~~~~~a~kp~ 349 (351)
+.++|+++||++++.. ..+.+..+.++||.
T Consensus 274 ~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFEDDRARLFPTVIARKPA 305 (305)
T ss_dssp HHHHHHHTTCEEEEEECCTTSSSCEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEcccCceeeEEEEecCC
Confidence 9999999999998866 44567788899984
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=169.34 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=124.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.++++.. ..++.++.+|+.++++++
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence 4566677766788999999999999999999874 389999999999999998743 368999999999999888
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc--------------chHHHHHHH-----HHhh
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--------------IPFSRLLRQ-----NMMQ 307 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~--------------~~~~~~~~~-----~~~~ 307 (351)
++||+|++..+++|++++..+|+++.++|||||.+++.++........ .++...+.. .+..
T Consensus 107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (253)
T 3g5l_A 107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG 186 (253)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence 999999999999999999999999999999999999987653100000 000000000 0000
Q ss_pred ccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 308 ISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 308 ~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.......++.+++.++|+++||++++..
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeee
Confidence 0011123499999999999999998865
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=163.04 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=121.8
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++ .+++.+..+| +++++++||+|
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCEEEE
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCceEEE
Confidence 3455677999999999999999999885 999999999999999987 4688999998 67778999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
++..+++|++++..+++++.++|+|||.+++.++....... ...+...++.+++.++++ ||+++
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI--------------GPPLSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSS--------------SSCGGGCCCHHHHHHHTT--TEEEE
T ss_pred EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccccc--------------CchHhhhcCHHHHHHHHh--CcEEE
Confidence 99999999999999999999999999999999887643211 112445689999999999 99999
Q ss_pred EEEecC-eEEEEEEecC
Q 018740 333 KCTRNR-GFVMFTATKP 348 (351)
Q Consensus 333 ~~~~~g-~~~~~~a~kp 348 (351)
+....+ ....++++|+
T Consensus 144 ~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 144 KRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp EEECSSTTEEEEEEEEC
T ss_pred EccCCCCceEEEEEecC
Confidence 976655 3444455443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=167.71 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=122.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.++++ .+++.++.+|+.+++ ++
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CS
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-cc
Confidence 455666666678899999999999999999986556999999999999999986 467899999999988 78
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH--Hhhc-----cCCccCCCHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MMQI-----SGSYTFLSERE 319 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~s~~~ 319 (351)
++||+|++..+++|++++..+++++.++|+|||.+++.++..... .....+...... +... ..+..+++.++
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-HHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-HHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 899999999999999999999999999999999999998754211 111111111111 1110 22557889999
Q ss_pred HHHHHHHCCCeEE
Q 018740 320 IEDLCRACGLVDF 332 (351)
Q Consensus 320 l~~ll~~aGf~~v 332 (351)
+.++|+++||.+.
T Consensus 173 ~~~~l~~aGf~v~ 185 (259)
T 2p35_A 173 YFNALSPKSSRVD 185 (259)
T ss_dssp HHHHHGGGEEEEE
T ss_pred HHHHHHhcCCceE
Confidence 9999999999743
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=167.54 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=120.1
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~lp 243 (351)
+.+...+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... +.. ..++.++++|+...+
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL-RLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC-CCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh-cCCcccCcceEEEeCCccccc
Confidence 4555555555678999999999999999999887679999999999999999987654 110 127999999998888
Q ss_pred CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
.++++||+|++..+++|++++ ..+++++.++|||||++++.... + ....+............+...++.+++.
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI-E----YNVKFANLPAGKLRHKDHRFEWTRSQFQ 172 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH-H----HHHHTC-----------CCSCBCHHHHH
T ss_pred ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc-c----cchhhcccccccccccccccccCHHHHH
Confidence 777899999999999999877 79999999999999966654432 1 0000000111111233466778999999
Q ss_pred ----HHHHHCCCeEEE
Q 018740 322 ----DLCRACGLVDFK 333 (351)
Q Consensus 322 ----~ll~~aGf~~v~ 333 (351)
++++++||++..
T Consensus 173 ~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 173 NWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHcCceEEE
Confidence 999999998755
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-21 Score=164.70 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=127.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+...+. ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++ ++.+..+|+..++ .
T Consensus 34 ~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~ 99 (211)
T 3e23_A 34 LTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-A 99 (211)
T ss_dssp HHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-C
T ss_pred HHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-C
Confidence 334444443 477999999999999999999865 9999999999999999874 4567889999988 7
Q ss_pred CCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
+++||+|++..+++|++ ++..+|+++.++|||||++++..+...... . .....+..+++.+++.++
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~ 167 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEG--R----------DKLARYYNYPSEEWLRAR 167 (211)
T ss_dssp CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE--E----------CTTSCEECCCCHHHHHHH
T ss_pred CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc--c----------cccchhccCCCHHHHHHH
Confidence 88999999999999998 778999999999999999999887654321 1 012235568899999999
Q ss_pred HHHCC-CeEEEEEec---------CeEEEEEEecCCC
Q 018740 324 CRACG-LVDFKCTRN---------RGFVMFTATKPSQ 350 (351)
Q Consensus 324 l~~aG-f~~v~~~~~---------g~~~~~~a~kp~~ 350 (351)
++++| |++++.... ..|..++.++|+.
T Consensus 168 l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 168 YAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPEL 204 (211)
T ss_dssp HHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred HHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence 99999 999884432 2367777777764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=164.09 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=123.7
Q ss_pred HHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 169 MKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 169 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
+...+. ..++.+|||||||+|.++..+++.+. +++|+|+|+.+++.+++. ...++.++++|+.++ ++++
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-------~~~~~~~~~~d~~~~-~~~~ 106 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDW-TPDR 106 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGG-------CCTTEEEEECCTTSC-CCSS
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhc-------CCCCeEEEecccccC-CCCC
Confidence 333333 44567999999999999999999965 999999999999999872 137899999999988 6789
Q ss_pred ceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH-HHHHHhh---ccC----CccCCCH
Q 018740 248 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNMMQ---ISG----SYTFLSE 317 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~----~~~~~s~ 317 (351)
+||+|++..+++|++++ ..+|+++.++|+|||.+++.+++..... ....... ....... ... ...+++.
T Consensus 107 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (218)
T 3ou2_A 107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR-LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSP 185 (218)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCH
T ss_pred ceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-cchhhhcccccceeeecCCcchhhHhhcCCCH
Confidence 99999999999999987 7999999999999999999998763211 0110000 0000000 011 1346799
Q ss_pred HHHHHHHHHCCCeEEEEEecCeEEEEEEe
Q 018740 318 REIEDLCRACGLVDFKCTRNRGFVMFTAT 346 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~g~~~~~~a~ 346 (351)
+++.++++++||++......+......++
T Consensus 186 ~~~~~~l~~aGf~v~~~~~~~~~~~~~~~ 214 (218)
T 3ou2_A 186 AELTERLTALGWSCSVDEVHPGFLYATCR 214 (218)
T ss_dssp HHHHHHHHHTTEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEeeeccccceEeecC
Confidence 99999999999997666665555444443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=173.15 Aligned_cols=178 Identities=12% Similarity=0.131 Sum_probs=138.1
Q ss_pred HHHhccCCCC-CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CC
Q 018740 168 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (351)
Q Consensus 168 ~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (351)
.+...+...+ +.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++... +. ..+++++.+|+.+.+ +.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH-DL-GGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-TC-GGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc-CC-CCceEEEeCCcccCcccC
Confidence 4444555445 78999999999999999999988889999999 88999999987765 11 357999999998875 13
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH-HhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~ 322 (351)
.+.||+|++.+++||++++ ..+|++++++|+|||.+++.++..+.... .+....+... ......+...++.+++.+
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPALSADFSLHMMVNTNHGELHPTPWIAG 324 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSHHHHHHHHHHHHHSTTCCCCCHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCchHHHhhHHHHhhCCCCCcCCHHHHHH
Confidence 4569999999999999877 79999999999999999999887654321 2222222211 111122455789999999
Q ss_pred HHHHCCCeEEEEEecCeEEEEEEecCCC
Q 018740 323 LCRACGLVDFKCTRNRGFVMFTATKPSQ 350 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g~~~~~~a~kp~~ 350 (351)
+++++||++++. ..+.+.++.++||+.
T Consensus 325 ll~~aGf~~~~~-~~g~~~l~~a~kp~~ 351 (352)
T 3mcz_A 325 VVRDAGLAVGER-SIGRYTLLIGQRSSG 351 (352)
T ss_dssp HHHHTTCEEEEE-EETTEEEEEEECCCC
T ss_pred HHHHCCCceeee-ccCceEEEEEecCCC
Confidence 999999999984 456788999999974
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=170.46 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=126.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++... ..++.++++|+.+++++ ++||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNIN-RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCCS-CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccCCcc-CCceEEEEcC
Confidence 578999999999999999999875 9999999999999999988765 34899999999998876 8899999998
Q ss_pred -ccccC---CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcch---HH---HH---HHHH-------------------
Q 018740 257 -AIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP---FS---RL---LRQN------------------- 304 (351)
Q Consensus 257 -vl~h~---~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~---~~---~~---~~~~------------------- 304 (351)
+++|+ .++..+|+++.++|+|||.+++..++........+ +. .. .+..
T Consensus 110 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (246)
T 1y8c_A 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGE 189 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCC
Confidence 99999 45679999999999999999997775421000000 00 00 0000
Q ss_pred -Hh--hccCCccCCCHHHHHHHHHHCCCeEEEEEec---------CeEEEEEEecCC
Q 018740 305 -MM--QISGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKPS 349 (351)
Q Consensus 305 -~~--~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~---------g~~~~~~a~kp~ 349 (351)
+. ....+.++++.+++.++|+++||++++.... ....+++++||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~~ 246 (246)
T 1y8c_A 190 FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLGG 246 (246)
T ss_dssp SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEECC
T ss_pred cccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEecC
Confidence 00 0011356889999999999999999986533 245788888874
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=167.00 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=121.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~lp 243 (351)
+.+...+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++... +.. ..++.++++|+..++
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG-GSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh-ccccccCcceEEEeCcccccc
Confidence 4455555545678999999999999999999886679999999999999999987654 110 128999999998888
Q ss_pred CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
..+++||+|++..+++|++++ ..+++++.++|||||+++ .+++.+....... +. ........+...++.+++.
T Consensus 98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~ 172 (219)
T 3jwg_A 98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV-STPNKEYNFHYGN-LF---EGNLRHRDHRFEWTRKEFQ 172 (219)
T ss_dssp GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE-EEEBGGGGGCCCC-T--------GGGCCTTSBCHHHHH
T ss_pred cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEE-Eccchhhhhhhcc-cC---cccccccCceeeecHHHHH
Confidence 778899999999999999877 699999999999999554 4544321111100 10 1111234466778999999
Q ss_pred ----HHHHHCCCeEEE
Q 018740 322 ----DLCRACGLVDFK 333 (351)
Q Consensus 322 ----~ll~~aGf~~v~ 333 (351)
++++++||++..
T Consensus 173 ~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 173 TWAVKVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHCCcEEEE
Confidence 889999997755
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=164.05 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=125.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLPFA 245 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~lp~~ 245 (351)
+...+. ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... +.. ..++.++.+|+..++++
T Consensus 24 ~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~ 98 (235)
T 3sm3_A 24 IHNYLQ--EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSP-GLNQKTGGKAEFKVENASSLSFH 98 (235)
T ss_dssp HHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCC-SCCSSSSCEEEEEECCTTSCCSC
T ss_pred HHHhCC--CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc-CCccccCcceEEEEecccccCCC
Confidence 344444 477999999999999999999865 9999999999999999987654 110 13689999999999988
Q ss_pred CCceeeEEeccccccCCChH---HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhc--------------
Q 018740 246 SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI-------------- 308 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~---~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 308 (351)
+++||+|++..+++|++++. .+++++.++|+|||.+++.++....... .+.......+...
T Consensus 99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (235)
T 3sm3_A 99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LYRKRYLHDFPITKEEGSFLARDPETG 176 (235)
T ss_dssp TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HHHHHHHHHHHHHCSTTEEEEECTTTC
T ss_pred CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HHHHHhhhhccchhhhcceEecccccC
Confidence 99999999999999999998 8999999999999999999987643211 1111111111110
Q ss_pred --cCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 309 --SGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 309 --~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
..+..+++.+++.++++++||++++..
T Consensus 177 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 177 ETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp CEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred CcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 113457899999999999999998844
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=169.20 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=126.1
Q ss_pred HHHhc-cCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 168 LMKGY-LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 168 ~l~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+... ....++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.+++++... ..++.++++|+.++++
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~- 86 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL- 86 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC-
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCc-
Confidence 34433 3556688999999999999999999865 369999999999999999988765 4589999999999887
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc---------CCCC-CcchHHHHHHHHHhh--ccCCcc
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV---------DGPF-NLIPFSRLLRQNMMQ--ISGSYT 313 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~---------~~~~-~~~~~~~~~~~~~~~--~~~~~~ 313 (351)
+++||+|++..+++|++++..++++++++|||||++++.++.. ++.. ........+...+.. ......
T Consensus 87 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD 166 (284)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCC
T ss_pred CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccc
Confidence 4689999999999999999999999999999999999998761 1000 000001122221111 112345
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEec
Q 018740 314 FLSEREIEDLCRACGLVDFKCTRN 337 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~~~~ 337 (351)
+.+.+++.++|+++||++++....
T Consensus 167 ~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 167 GNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEc
Confidence 667789999999999999876443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=167.56 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=120.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..++.++.+|+.++++++++||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAGV----DRKVQVVQADARAIPLPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTTS----CTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc----CCceEEEEcccccCCCCCCCeeEEE
Confidence 445678999999999999999998865 9999999999999999987322 5789999999999998889999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhc----cCCccCCCHHHHHHHHHHCCC
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~l~~ll~~aGf 329 (351)
+..++||++|+..+++++.++|+|||.+++.....+ ......+...+....... ..+..+++.+++.++++++||
T Consensus 110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 188 (263)
T 2yqz_A 110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE-ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGL 188 (263)
T ss_dssp EESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEEC-CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred ECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCC-ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999998832221 111001222222222111 113456788999999999999
Q ss_pred eEEEE
Q 018740 330 VDFKC 334 (351)
Q Consensus 330 ~~v~~ 334 (351)
+++..
T Consensus 189 ~~~~~ 193 (263)
T 2yqz_A 189 KPRTR 193 (263)
T ss_dssp CCEEE
T ss_pred CcceE
Confidence 97664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=164.26 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=113.9
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-----C----CCCCCeEEEEecCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----N----FPKENFLLVRADIS 240 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----g----~~~~~i~~~~~d~~ 240 (351)
...+...++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++..... | ....+++++++|+.
T Consensus 15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HHhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 3334455678999999999999999999976 99999999999999998764310 0 01368999999999
Q ss_pred CCCCCC-CceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCH
Q 018740 241 RLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE 317 (351)
Q Consensus 241 ~lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 317 (351)
++++.+ ++||+|++..+++|++.. ..++++++++|||||++++.+...+.. ...+....++.
T Consensus 93 ~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~---------------~~~~~~~~~~~ 157 (203)
T 1pjz_A 93 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA---------------LLEGPPFSVPQ 157 (203)
T ss_dssp SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---------------SSSSCCCCCCH
T ss_pred cCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---------------ccCCCCCCCCH
Confidence 998765 789999999999999754 468999999999999966655443210 01112234689
Q ss_pred HHHHHHHHHCCCeEEEEE
Q 018740 318 REIEDLCRACGLVDFKCT 335 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~ 335 (351)
+++.+++++ ||+++...
T Consensus 158 ~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp HHHHHTSCS-SEEEEEEE
T ss_pred HHHHHHhcC-CcEEEEec
Confidence 999999998 99877643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=167.17 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=126.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++... +. ..++.++.+|+.++|
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS-EN-LRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC-CC-CSCEEEEESCGGGCC--
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhc-CC-CCCeEEEECChhhCC--
Confidence 4556667777778899999999999999998543 239999999999999999988765 21 358999999998776
Q ss_pred CCceeeEEeccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCC-------cchHHHHHHHHHhh-ccCCccCC
Q 018740 246 SSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN-------LIPFSRLLRQNMMQ-ISGSYTFL 315 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~ 315 (351)
++||+|++..+++|+ .++..+++++.++|||||.+++.++....... .............. ......++
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 206 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence 789999999999999 67889999999999999999999987643110 00000111111111 12234567
Q ss_pred CHHHHHHHHHHCCCeEEEEEec
Q 018740 316 SEREIEDLCRACGLVDFKCTRN 337 (351)
Q Consensus 316 s~~~l~~ll~~aGf~~v~~~~~ 337 (351)
+.+++.++++++||++++....
T Consensus 207 s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 207 SIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp CHHHHHHHHHTTTCEEEEEEEC
T ss_pred CHHHHHHHHHhCCcEEEEEEeC
Confidence 9999999999999999886543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=170.03 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=124.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++ .++.++++|+.++|
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~ 89 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLA 89 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCC
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCC
Confidence 344566777777778899999999999999999865 4999999999999988753 48999999999999
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc--hHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+++++||+|++..+++|++++..+++++.++|| ||.+++.++..+...... ........ ..+..+++.+++.
T Consensus 90 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 163 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWE-----DALRFLPLDEQIN 163 (261)
T ss_dssp SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHH-----HHHTSCCHHHHHH
T ss_pred CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhh-----hhhhhCCCHHHHH
Confidence 989999999999999999999999999999999 999988888754322111 11111111 1134577888999
Q ss_pred HHHHHCCCeEEEEEe
Q 018740 322 DLCRACGLVDFKCTR 336 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~ 336 (351)
+|+++||++++...
T Consensus 164 -~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 164 -LLQENTKRRVEAIP 177 (261)
T ss_dssp -HHHHHHCSEEEEEE
T ss_pred -HHHHcCCCceeEEE
Confidence 99999998887544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-20 Score=168.62 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=128.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... |. ..++.++.+|+.++
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~--- 134 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV-DS-PRRKEVRIQGWEEF--- 134 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS-CC-SSCEEEEECCGGGC---
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEECCHHHc---
Confidence 45566777777889999999999999999999832 49999999999999999998775 22 34799999999876
Q ss_pred CCceeeEEeccccccCCCh---------HHHHHHHHhcccCCcEEEEEeeccCCCCCcch-------HHHHHHHHHhh-c
Q 018740 246 SSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-------FSRLLRQNMMQ-I 308 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~---------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~-------~~~~~~~~~~~-~ 308 (351)
+++||+|++..+++|++|| ..+++++.++|||||++++.++.......... ....+...+.. .
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 214 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhc
Confidence 6889999999999999887 69999999999999999999887542110000 00000111111 1
Q ss_pred cCCccCCCHHHHHHHHHHCCCeEEEEEecC
Q 018740 309 SGSYTFLSEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 309 ~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
.......+.+++.++++++||++++....+
T Consensus 215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 215 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 123357789999999999999998876544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=165.36 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=122.3
Q ss_pred HHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--
Q 018740 166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-- 242 (351)
Q Consensus 166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-- 242 (351)
.+.+...+. ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++ ++.++.+|+.+.
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~~~ 95 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEYLK 95 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHHHH
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHHhh
Confidence 344544443 23568999999999999999999876 89999999999999985 277888998775
Q ss_pred CCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
++++++||+|++..+++|++++ ..+++++.++|||||++++.+++.... . ..... .....+..+++.+++
T Consensus 96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~l 167 (240)
T 3dli_A 96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---Y----SLINF-YIDPTHKKPVHPETL 167 (240)
T ss_dssp TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---H----HHHHH-TTSTTCCSCCCHHHH
T ss_pred hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---H----HHHHH-hcCccccccCCHHHH
Confidence 7788999999999999999966 899999999999999999999875421 1 11111 223457788999999
Q ss_pred HHHHHHCCCeEEEEEecC
Q 018740 321 EDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~~g 338 (351)
.++++++||++++.....
T Consensus 168 ~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 168 KFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHCCCeEEEEEEec
Confidence 999999999998865543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=156.93 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=119.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++... + ..++.++.+|+.++++ ++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~~~~-~~ 96 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIE-N--LDNLHTRVVDLNNLTF-DR 96 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T--CTTEEEEECCGGGCCC-CC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhC-C--CCCcEEEEcchhhCCC-CC
Confidence 344455555678999999999999999999865 9999999999999999988766 1 3579999999999887 78
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+||+|++..+++|++ ++..+++++.++|+|||.+++.++........ ...+...++.+++.++++
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-------------TVGFPFAFKEGELRRYYE 163 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------CSCCSCCBCTTHHHHHTT
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC-------------CCCCCCccCHHHHHHHhc
Confidence 999999999999998 77899999999999999988877654321110 112345679999999998
Q ss_pred HCCCeEEEEE
Q 018740 326 ACGLVDFKCT 335 (351)
Q Consensus 326 ~aGf~~v~~~ 335 (351)
+ |++++..
T Consensus 164 ~--f~~~~~~ 171 (199)
T 2xvm_A 164 G--WERVKYN 171 (199)
T ss_dssp T--SEEEEEE
T ss_pred C--CeEEEec
Confidence 7 9887743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=168.30 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=125.3
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+. ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++ ..++.++++|+.++++ +
T Consensus 42 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~ 108 (263)
T 3pfg_A 42 ALVRRHSP--KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSL-G 108 (263)
T ss_dssp HHHHHHCT--TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTCCC-S
T ss_pred HHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhh--------CCCCEEEECChHHCCc-c
Confidence 34444433 367999999999999999999876 999999999999999987 4578999999999887 7
Q ss_pred CceeeEEecc-ccccCC---ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchH-----------HHHHHH--------
Q 018740 247 SSIDAVHAGA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-----------SRLLRQ-------- 303 (351)
Q Consensus 247 ~~fD~V~~~~-vl~h~~---d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-----------~~~~~~-------- 303 (351)
++||+|++.. +++|++ +...+|+++.++|+|||.+++.++..........+ ...++.
T Consensus 109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (263)
T 3pfg_A 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEAT 188 (263)
T ss_dssp CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEE
Confidence 8999999998 999997 44588999999999999999975432211000000 000000
Q ss_pred -------------HHh--hccCCccCCCHHHHHHHHHHCCCeEEEEEec-CeEEEEEEecCCC
Q 018740 304 -------------NMM--QISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKPSQ 350 (351)
Q Consensus 304 -------------~~~--~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp~~ 350 (351)
.+. ....+.++++.+++.++|+++||++++.... +...+++++||..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 189 RIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC-
T ss_pred EEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCC
Confidence 000 0011256789999999999999999885432 3456678888763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=170.44 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=111.4
Q ss_pred CCCCeEEEEcCccCHHHH----HHHHhCCCCeE--EEEeCCHHHHHHHHHHHhhhCCCCCCCeEE--EEecCCCCC----
Q 018740 176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLV--VALDYSENMLKQCYEFVQQESNFPKENFLL--VRADISRLP---- 243 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~--~~~d~~~lp---- 243 (351)
.++.+|||||||+|.++. .+...++...+ +|+|+|+.|++.|++++....+ ..++.+ ..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence 456799999999997654 34444555544 9999999999999998765311 244544 455555443
Q ss_pred --CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHH
Q 018740 244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSERE 319 (351)
Q Consensus 244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ 319 (351)
+++++||+|++.+++||++|+..+|++++++|||||++++.....+. .+...+...... ...+..+++.++
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-----GWDKLWKKYGSRFPQDDLCQYITSDD 203 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-----HHHHHHHHHGGGSCCCTTCCCCCHHH
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc-----cHHHHHHHHHHhccCCCcccCCCHHH
Confidence 56789999999999999999999999999999999999998765431 222222222211 112456889999
Q ss_pred HHHHHHHCCCeEEEE
Q 018740 320 IEDLCRACGLVDFKC 334 (351)
Q Consensus 320 l~~ll~~aGf~~v~~ 334 (351)
+.++|+++||+++..
T Consensus 204 ~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 204 LTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 999999999988763
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=167.52 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=124.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++... .++.++++|+..+++++
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~ 156 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCC
Confidence 344555566678899999999999999998886 347999999999999999985432 67999999999998888
Q ss_pred CceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
++||+|++..+++|++ ++..+|+++.++|+|||++++.++........ .....+..+++.+++.+++
T Consensus 157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l 225 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-----------VDKEDSSLTRSDIHYKRLF 225 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-----------EETTTTEEEBCHHHHHHHH
T ss_pred CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce-----------ecccCCcccCCHHHHHHHH
Confidence 9999999999999995 47899999999999999999998754321110 1112234467999999999
Q ss_pred HHCCCeEEEEEec
Q 018740 325 RACGLVDFKCTRN 337 (351)
Q Consensus 325 ~~aGf~~v~~~~~ 337 (351)
+++||++++....
T Consensus 226 ~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 226 NESGVRVVKEAFQ 238 (254)
T ss_dssp HHHTCCEEEEEEC
T ss_pred HHCCCEEEEeeec
Confidence 9999999886543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=169.30 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=136.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++... +. ..+++++.+|+.+.+++
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GV-ADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-TC-TTTEEEEECCTTTSCCC
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-CC-CCCEEEEeCccccCCCC
Confidence 34555666666778999999999999999999988889999999 99999999988765 21 34699999999988765
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---ccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~l 320 (351)
+. |+|++..++||+++ ...+|++++++|+|||++++.++..+.. ..+........+.. ......+++.+++
T Consensus 256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~ 331 (359)
T 1x19_A 256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP--ENPNFDYLSHYILGAGMPFSVLGFKEQARY 331 (359)
T ss_dssp CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT--TSCCHHHHHHHGGGGGSSCCCCCCCCGGGH
T ss_pred CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC--CCchHHHHHHHHHhcCCCCcccCCCCHHHH
Confidence 44 99999999999988 6789999999999999999988765432 11222222211111 1112345899999
Q ss_pred HHHHHHCCCeEEEEEecCeEEEEEEecC
Q 018740 321 EDLCRACGLVDFKCTRNRGFVMFTATKP 348 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~~g~~~~~~a~kp 348 (351)
.++++++||++++....+...++.++||
T Consensus 332 ~~ll~~aGf~~v~~~~~~~~~vi~a~kp 359 (359)
T 1x19_A 332 KEILESLGYKDVTMVRKYDHLLVQAVKP 359 (359)
T ss_dssp HHHHHHHTCEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHCCCceEEEEecCCceEEEEeCC
Confidence 9999999999998766556778888886
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=163.05 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=123.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+...++.+|||||||+|.++..+++.+. .+++|+|+|+.+++.++++.. ..++.++.+|+..++++++
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGP------DTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSC------SSSEEEEECCGGGCCCCTT
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcc------cCCceEEEcChhhccCCCC
Confidence 456666666788999999999999999998853 389999999999999998642 2479999999999888889
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc-------------hHHHHH-----HHHHhhcc
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-------------PFSRLL-----RQNMMQIS 309 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-------------~~~~~~-----~~~~~~~~ 309 (351)
+||+|++..+++|++++..+++++.++|+|||.+++.+++........ +..... ...+....
T Consensus 107 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 107 SFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred CceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 999999999999999999999999999999999999886531000000 000000 00000011
Q ss_pred CCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 310 GSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 310 ~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
.+...++.+++.++|+++||++++...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 233456999999999999999988553
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=166.66 Aligned_cols=177 Identities=12% Similarity=0.154 Sum_probs=133.7
Q ss_pred HHHHhccCC--CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 167 ELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 167 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+...+.. .++.+|||+|||+|.++..+++..+..+++++|++ .+++.+++++... +. ..+++++.+|+.+.++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-GV-ASRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH-TC-GGGEEEEESCTTTSCC
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc-CC-CcceEEEecccccCCC
Confidence 344555554 56789999999999999999999777799999999 9999999988765 21 2469999999988776
Q ss_pred CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH-HHhhccCCccCCCHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQISGSYTFLSEREIE 321 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~ 321 (351)
+++ ||+|++.+++||++++ ..+|++++++|+|||.+++.++..+... ..+....... .......+...++.+++.
T Consensus 230 ~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 307 (335)
T 2r3s_A 230 GND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR-ITPPDAAAFSLVMLATTPNGDAYTFAEYE 307 (335)
T ss_dssp CSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTS-SCSHHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred CCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCc-CCchHHHHHHHHHHeeCCCCCcCCHHHHH
Confidence 554 9999999999999766 5999999999999999999888764321 1122222211 111222245678999999
Q ss_pred HHHHHCCCeEEEEEec-CeEEEEEEecC
Q 018740 322 DLCRACGLVDFKCTRN-RGFVMFTATKP 348 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~~-g~~~~~~a~kp 348 (351)
++++++||++++.... +...++.+++|
T Consensus 308 ~ll~~aGf~~~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 308 SMFSNAGFSHSQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp HHHHHTTCSEEEEECCTTSSSEEEEEEC
T ss_pred HHHHHCCCCeeeEEECCCCceeEEEecC
Confidence 9999999999986653 33445555554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=168.41 Aligned_cols=114 Identities=28% Similarity=0.360 Sum_probs=100.4
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+.++++.+...... +.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++ .+++.++++|+++
T Consensus 26 p~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~ 92 (257)
T 4hg2_A 26 PRALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED 92 (257)
T ss_dssp CHHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred HHHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence 45566777776544 56999999999999999999886 99999999999988764 4789999999999
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+|+++++||+|++..++||+ ++..++++++|+|||||+|++..+...
T Consensus 93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999999999999776 788999999999999999999887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=163.16 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=115.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++... + ...++.++++|+.+++ ++++||+|++..+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 141 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSS-P-KAEYFSFVKEDVFTWR-PTELFDLIFDYVF 141 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTS-G-GGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhcc-C-CCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence 45999999999999999988654 9999999999999999987653 0 1357999999999987 4568999999999
Q ss_pred cccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
++|++ ++..+++++.++|+|||.+++..+...... ......++.+++.++++++||++++..
T Consensus 142 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 142 FCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV----------------GGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC----------------SCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC----------------CCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 99998 888999999999999999999887654211 112334799999999999999998855
Q ss_pred e
Q 018740 336 R 336 (351)
Q Consensus 336 ~ 336 (351)
.
T Consensus 206 ~ 206 (235)
T 3lcc_A 206 E 206 (235)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-19 Score=166.06 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=135.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+...+...+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++++... +. ..+++++.+|+. .+++
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~l-~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR-GL-ADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-TC-TTTEEEEECCTT-TCCC
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc-Cc-CCceEEeccCCC-CCCC
Confidence 34455555666678999999999999999999988889999999 99999999988765 22 468999999998 4555
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
. .||+|++.+++||++++. .+|++++++|+|||++++.++..+.... +. ................++.+++.++
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~--~~-~~~~d~~~~~~~~g~~~t~~e~~~l 342 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA--AS-TLFVDLLLLVLVGGAERSESEFAAL 342 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC--HH-HHHHHHHHHHHHSCCCBCHHHHHHH
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC--Cc-hhHhhHHHHhhcCCccCCHHHHHHH
Confidence 5 799999999999999886 7999999999999999999887653321 21 1111111111123456799999999
Q ss_pred HHHCCCeEEEEEe--cCeEEEEEEec
Q 018740 324 CRACGLVDFKCTR--NRGFVMFTATK 347 (351)
Q Consensus 324 l~~aGf~~v~~~~--~g~~~~~~a~k 347 (351)
++++||++++... .+...++.++|
T Consensus 343 l~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 343 LEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999776 45566666654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=172.10 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=124.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhC----C-CCCCCeEEEEecCCCC------
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES----N-FPKENFLLVRADISRL------ 242 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----g-~~~~~i~~~~~d~~~l------ 242 (351)
..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++.... | ...+++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467899999999999999998873 56799999999999999999765320 1 1237899999999987
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++++++||+|+++.+++|++|+..+|++++++|||||++++.++..+... ..........+ .......++.+++.+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~ 236 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL--SEAAQQDPILY--GECLGGALYLEDFRR 236 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC--CHHHHHCHHHH--HTTCTTCCBHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc--CHhHhhhHHHh--hcccccCCCHHHHHH
Confidence 88899999999999999999999999999999999999999988765321 11111111111 112335678999999
Q ss_pred HHHHCCCeEEEEE
Q 018740 323 LCRACGLVDFKCT 335 (351)
Q Consensus 323 ll~~aGf~~v~~~ 335 (351)
+|+++||.+++..
T Consensus 237 ll~~aGF~~v~~~ 249 (383)
T 4fsd_A 237 LVAEAGFRDVRLV 249 (383)
T ss_dssp HHHHTTCCCEEEE
T ss_pred HHHHCCCceEEEE
Confidence 9999999877644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=156.62 Aligned_cols=137 Identities=21% Similarity=0.333 Sum_probs=112.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ ++.++.+|+..+++++++||+|++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT 111 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence 679999999999999887653 9999999999999873 678999999999988889999999999
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH--hhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
++|++++..+|+++.++|+|||.+++.++..+. .+........ .....+..+++.+++.++|+++||++++..
T Consensus 112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999999999999999999999887532 1111111110 112235677899999999999999988744
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=163.38 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=118.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++... + ..++.++.+|+..+++++++||+|++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE-G--KRVRNYFCCGLQDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG-G--GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc-C--CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence 57899999999999999998876 459999999999999999987654 1 3468999999999988888999999999
Q ss_pred ccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+++|++++. .+++++.++|+|||++++.++..... .. + ....+...++.+++.++++++||++++.
T Consensus 155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~-------~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----VI-------L-DDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----EE-------E-ETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----ce-------e-cccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 999999865 89999999999999999998875430 00 0 0111233458999999999999999886
Q ss_pred Ee
Q 018740 335 TR 336 (351)
Q Consensus 335 ~~ 336 (351)
..
T Consensus 223 ~~ 224 (241)
T 2ex4_A 223 ER 224 (241)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=164.85 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=127.9
Q ss_pred hccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
..+...+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++++... +. ..+++++.+|+. .+++. +||
T Consensus 163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~-~~~p~-~~D 237 (332)
T 3i53_A 163 AKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT-GL-SGRAQVVVGSFF-DPLPA-GAG 237 (332)
T ss_dssp GSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-TC-TTTEEEEECCTT-SCCCC-SCS
T ss_pred HhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc-Cc-CcCeEEecCCCC-CCCCC-CCc
Confidence 334444567999999999999999999988889999999 99999999988765 21 378999999997 34444 799
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCC
Q 018740 251 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 251 ~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 328 (351)
+|++.+++||++++ ..+|++++++|+|||++++.++..+.. ....... +..... .....++.+++.++++++|
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d-~~~~~~---~~~~~~t~~e~~~ll~~aG 312 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMD-LRMLTY---FGGKERSLAELGELAAQAG 312 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHH-HHHHHH---HSCCCCCHHHHHHHHHHTT
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHH-HHHHhh---CCCCCCCHHHHHHHHHHCC
Confidence 99999999999987 689999999999999999988876533 1111111 111111 1445679999999999999
Q ss_pred CeEEEEEecCeEEEEEEec
Q 018740 329 LVDFKCTRNRGFVMFTATK 347 (351)
Q Consensus 329 f~~v~~~~~g~~~~~~a~k 347 (351)
|++++....+...++.+++
T Consensus 313 f~~~~~~~~~~~~vie~r~ 331 (332)
T 3i53_A 313 LAVRAAHPISYVSIVEMTA 331 (332)
T ss_dssp EEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEECCCcEEEEEee
Confidence 9999977655455555543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=161.85 Aligned_cols=167 Identities=12% Similarity=0.130 Sum_probs=127.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHHHhhhCCCCCCCeEEEEec-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQESNFPKENFLLVRAD- 238 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~------~~~~a~~~~~~~~g~~~~~i~~~~~d- 238 (351)
..+...+...++.+|||||||+|.++..+++. ++..+|+|+|+|+. +++.+++++... +. ..++.++.+|
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-PL-GDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-TT-GGGEEEECSCC
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-CC-CCceEEEECCh
Confidence 45556666777889999999999999999988 45579999999997 999999988765 11 2579999998
Q ss_pred --CCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc--hHHHHHHHH-Hh---h--c
Q 018740 239 --ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQN-MM---Q--I 308 (351)
Q Consensus 239 --~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~-~~---~--~ 308 (351)
...+|+++++||+|++..+++|++++..+++.+.++++|||.+++.++..+...... .....+... +. . .
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV 190 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence 456677789999999999999999999877777788888999999988765332111 111111111 10 0 1
Q ss_pred cCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 309 SGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 309 ~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
..+..+++.+++.++++++||++++..
T Consensus 191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~ 217 (275)
T 3bkx_A 191 ANIRTLITPDTLAQIAHDNTWTYTAGT 217 (275)
T ss_dssp CSCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred ccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 234568899999999999999998754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=155.88 Aligned_cols=140 Identities=26% Similarity=0.334 Sum_probs=112.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+. ++.+|||+|||+|.++..+ + ..+++|+|+|+.+++.++++ ..++.++.+|+.++|++++
T Consensus 29 ~l~~~~~--~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~ 94 (211)
T 2gs9_A 29 ALKGLLP--PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRR--------APEATWVRAWGEALPFPGE 94 (211)
T ss_dssp HHHTTCC--CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHH--------CTTSEEECCCTTSCCSCSS
T ss_pred HHHHhcC--CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHh--------CCCcEEEEcccccCCCCCC
Confidence 3444443 6789999999999999887 2 12899999999999999987 3578899999999998889
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH-H--hhccCCccCCCHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-M--MQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++..+++|++++..+++++.++|||||.+++.+++.+. .+....... . .....+.++++.+++.+++
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l 169 (211)
T 2gs9_A 95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALL 169 (211)
T ss_dssp CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHH
T ss_pred cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHh
Confidence 9999999999999999999999999999999999999987642 121111111 0 1122356789999999999
Q ss_pred HHCC
Q 018740 325 RACG 328 (351)
Q Consensus 325 ~~aG 328 (351)
+ |
T Consensus 170 ~--G 171 (211)
T 2gs9_A 170 G--P 171 (211)
T ss_dssp C--S
T ss_pred c--C
Confidence 9 7
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=167.78 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=118.5
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-------------------------
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP------------------------- 228 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~------------------------- 228 (351)
...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++....+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 345678999999999988777666653 379999999999999998765431000
Q ss_pred -CCCeE-EEEecCCCC-CC---CCCceeeEEeccccccC-C---ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 229 -KENFL-LVRADISRL-PF---ASSSIDAVHAGAAIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 229 -~~~i~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~-~---d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
..++. ++++|+.+. |+ ..++||+|+++.+|||+ + +...++++++++|||||.|++.+...+... .
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~--~--- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY--M--- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--E---
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccc--e---
Confidence 01243 889999873 43 25789999999999996 3 446899999999999999999876533210 0
Q ss_pred HHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEec-----------CeEEEEEEecCC
Q 018740 299 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-----------RGFVMFTATKPS 349 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-----------g~~~~~~a~kp~ 349 (351)
..........++.+++.++|+++||++++.... ..+++++|+|+.
T Consensus 206 ------~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 206 ------VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp ------ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred ------eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 000001223679999999999999998885542 256677888875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=165.54 Aligned_cols=164 Identities=12% Similarity=0.148 Sum_probs=126.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.+.+...+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.+++++... |. ..++.++.+|+.++|
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASI-DT-NRSRQVLLQGWEDFA- 153 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTS-CC-SSCEEEEESCGGGCC-
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEECChHHCC-
Confidence 456667777777889999999999999999987 54 9999999999999999988765 21 356999999998875
Q ss_pred CCCceeeEEeccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCc----chH---HHHHHHHHhh-ccCCccC
Q 018740 245 ASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL----IPF---SRLLRQNMMQ-ISGSYTF 314 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~----~~~---~~~~~~~~~~-~~~~~~~ 314 (351)
++||+|++..+++|+ +++..+++++.++|||||.+++.++........ .+. .......+.. ......+
T Consensus 154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T 2fk8_A 154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231 (318)
T ss_dssp --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence 789999999999999 578899999999999999999999886431100 000 0001111111 1123456
Q ss_pred CCHHHHHHHHHHCCCeEEEEEe
Q 018740 315 LSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
++.+++.++++++||++++...
T Consensus 232 ~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 232 PSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp CCHHHHHHHHHHTTCBCCCCEE
T ss_pred CCHHHHHHHHHhCCCEEEEEEe
Confidence 7999999999999999887544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=157.82 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=128.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+...+.. +.+|||+|||+|.++..+++. . +++|+|+|+.+++.|++++... ..++.++.+|+.++++
T Consensus 23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCC
T ss_pred HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCC
Confidence 34455666554 579999999999999999887 3 9999999999999999988766 4689999999998886
Q ss_pred CCCceeeEEecc-ccccCC---ChHHHHHHHHhcccCCcEEEEEeeccCCCCCc---ch-----------HHHHH---HH
Q 018740 245 ASSSIDAVHAGA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IP-----------FSRLL---RQ 303 (351)
Q Consensus 245 ~~~~fD~V~~~~-vl~h~~---d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~---~~-----------~~~~~---~~ 303 (351)
+ ++||+|++.. +++|+. ++..+++++.++|+|||.+++..+........ .. |.... ..
T Consensus 94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (243)
T 3d2l_A 94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL 172 (243)
T ss_dssp S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTT
T ss_pred C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCcccc
Confidence 5 7899999986 999994 45688999999999999999977653210000 00 00000 00
Q ss_pred -------H--------Hhh--ccCCccCCCHHHHHHHHHHCCCeEEEEEec---------CeEEEEEEecC
Q 018740 304 -------N--------MMQ--ISGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKP 348 (351)
Q Consensus 304 -------~--------~~~--~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~---------g~~~~~~a~kp 348 (351)
. +.. ...+.++++.+++.++|+++||++++.... ....+++++||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 173 SVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 0 000 011335789999999999999999886532 34577788886
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=162.93 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=104.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~ 241 (351)
....+.+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++..... .....++.+..+|+..
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 44445666666555678999999999999999999976 99999999999999998764320 0012578899999988
Q ss_pred CC---CCCCceeeEEec-cccccCCC-------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LP---FASSSIDAVHAG-AAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ +++++||+|++. .+++|+++ +..++++++++|||||++++..++.
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 87 788999999998 89999999 8999999999999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=159.06 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=114.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---------hCC-----CCCCCe
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESN-----FPKENF 232 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------~~g-----~~~~~i 232 (351)
+.+...+...++.+|||+|||+|..+..|++.|. +|+|+|+|+.|++.|+++... ..+ ....++
T Consensus 58 ~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (252)
T 2gb4_A 58 KHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI 135 (252)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred HHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce
Confidence 3443333334578999999999999999999987 999999999999999876531 000 013689
Q ss_pred EEEEecCCCCCCCC-CceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhcc
Q 018740 233 LLVRADISRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 309 (351)
Q Consensus 233 ~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
.++++|+.++++.+ ++||+|++..+++|++.+ ..+++++.++|||||++++.+...+.. ...
T Consensus 136 ~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~---------------~~~ 200 (252)
T 2gb4_A 136 SLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPT---------------KHA 200 (252)
T ss_dssp EEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT---------------SCC
T ss_pred EEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCc---------------cCC
Confidence 99999999998764 899999999999999743 578999999999999998766553211 001
Q ss_pred CCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 310 GSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 310 ~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+....++.+++.++++. +|+++...
T Consensus 201 g~~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 201 GPPFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp CSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence 12234789999999988 59877643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-19 Score=154.68 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=122.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+.. +.+|||+|||+|.++..+++.++ +++|+|+|+.+++.+++++... ..++.++++|+.+++++
T Consensus 29 ~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 100 (227)
T 1ve3_A 29 EPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFE 100 (227)
T ss_dssp HHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSC
T ss_pred HHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCC
Confidence 4455555554 77999999999999999999987 9999999999999999988776 47899999999998888
Q ss_pred CCceeeEEeccc--cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCc-chHHHHHHHHHhh---------------
Q 018740 246 SSSIDAVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQNMMQ--------------- 307 (351)
Q Consensus 246 ~~~fD~V~~~~v--l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~-~~~~~~~~~~~~~--------------- 307 (351)
+++||+|++..+ ++|..++..+++++.++|+|||.+++.+++....... ..........+..
T Consensus 101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEF 180 (227)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC
T ss_pred CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEe
Confidence 889999999999 5555677899999999999999999988763211000 0000000000000
Q ss_pred ------ccCCccCCCHHHHHHHHHHCCCeEEEEEecCeE
Q 018740 308 ------ISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 340 (351)
Q Consensus 308 ------~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~~ 340 (351)
...+...|.. ++.++|+++||..++....+.+
T Consensus 181 ~~~~~~~~~~~~~w~~-~~~~~l~~~GF~~v~~~~~~~~ 218 (227)
T 1ve3_A 181 KSEQDSFRVRFNVWGK-TGVELLAKLYFTKEAEEKVGNY 218 (227)
T ss_dssp -----CCEEEEECCCH-HHHHHHHTTTEEEEEEEEETTT
T ss_pred ccchhhheeehhhhch-HHHHHHHHHhhhHHHHHHhCCc
Confidence 0001123334 7899999999999997766643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-19 Score=161.96 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=122.2
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
+....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +....++.++++|+.
T Consensus 22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSD 99 (299)
T ss_dssp CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTT
T ss_pred CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHH
Confidence 3555666666654 367899999999999999999764 5679999999999999999987763 112578999999999
Q ss_pred CCCCCC------CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 241 RLPFAS------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 241 ~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
++++.+ ++||+|++..++||+ ++..+++++.++|+|||.+++.++..............+............+
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY 178 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGG
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccch
Confidence 998877 899999999999999 9999999999999999999995554321111111111122222111011122
Q ss_pred ---CCHHHHHHHHHHCCC
Q 018740 315 ---LSEREIEDLCRACGL 329 (351)
Q Consensus 315 ---~s~~~l~~ll~~aGf 329 (351)
...+.+.++++++||
T Consensus 179 w~~p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 179 WEQPGRSRLRNMLKDSHL 196 (299)
T ss_dssp SCTTHHHHHHTTTTTCCC
T ss_pred hhchhhHHHHHhhhccCC
Confidence 356678999999999
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=162.67 Aligned_cols=176 Identities=18% Similarity=0.222 Sum_probs=126.5
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC----CCeEEEEecCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK----ENFLLVRADIS 240 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~----~~i~~~~~d~~ 240 (351)
....+...+... +.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++... . .++.++++|+.
T Consensus 71 ~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 71 EAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEA----PADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTS----CHHHHTTEEEEECBTT
T ss_pred HHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhc----ccccccceEEEeCchh
Confidence 344555555543 34999999999999999999865 9999999999999999988765 3 68999999999
Q ss_pred CCCCCCCceeeEEec-cccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCC----C-cchHHHHHHHHH-------
Q 018740 241 RLPFASSSIDAVHAG-AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF----N-LIPFSRLLRQNM------- 305 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~-~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~----~-~~~~~~~~~~~~------- 305 (351)
++++ +++||+|++. .+++|++. ...+|+++.++|+|||++++.+++.+... . ...+.......+
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 222 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHL 222 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEe
Confidence 9987 6889999965 56676652 47999999999999999999998764210 0 000000000000
Q ss_pred --------------------hhccCCccCCCHHHHHHHHHHCCCeEEEEEecC-------eEEEEEEecC
Q 018740 306 --------------------MQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-------GFVMFTATKP 348 (351)
Q Consensus 306 --------------------~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g-------~~~~~~a~kp 348 (351)
.....+.++++.+++.++|+++||++++..... ...++.+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~~ 292 (299)
T 3g2m_A 223 PAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVMP 292 (299)
T ss_dssp EEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEECC
T ss_pred ccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhhh
Confidence 001123447899999999999999999865432 2455555543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=159.29 Aligned_cols=169 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+ .++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.++++ .+++.++.+|+.++++ +
T Consensus 32 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 32 DLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRL-G 98 (239)
T ss_dssp HHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH--------CTTCEEEECCTTTCCC-S
T ss_pred HHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh--------CCCCEEEECCHHHccc-C
Confidence 3444444 3577999999999999999999987 999999999999999986 4678999999999886 6
Q ss_pred CceeeEEe-ccccccCCCh---HHHHHHHHhcccCCcEEEEEeeccCCCCCcc---h-----------------------
Q 018740 247 SSIDAVHA-GAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLI---P----------------------- 296 (351)
Q Consensus 247 ~~fD~V~~-~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~---~----------------------- 296 (351)
++||+|+| ..+++|++++ ..+|+++.++|+|||.+++.++......... .
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNAT 178 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEE
Confidence 78999995 5599999654 5889999999999999999876543211000 0
Q ss_pred -----HH-HHHHHHHhh--ccCCccCCCHHHHHHHHHHCCCeEEEEEe-cCeEEEEEEecC
Q 018740 297 -----FS-RLLRQNMMQ--ISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFVMFTATKP 348 (351)
Q Consensus 297 -----~~-~~~~~~~~~--~~~~~~~~s~~~l~~ll~~aGf~~v~~~~-~g~~~~~~a~kp 348 (351)
+. ......... ...+.++++.+++.++|+++||+++.... .+...+++++||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 179 RMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 00 000000000 01134678999999999999997666543 345677888886
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=164.53 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=130.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++... +. ..+++++.+|+.+ +++.
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-GL-ADRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-TC-TTTEEEEECCTTS-CCSC
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc-CC-CCceEEEeCCCCC-cCCC
Confidence 3455555666678999999999999999999988789999999 99999999988765 21 3489999999976 3333
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEee--ccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY--IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
.||+|++.+++||++++. .+|++++++|+|||++++.++ ..... ..+..............+...++.+++.+
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG--ADRFFSTLLDLRMLTFMGGRVRTRDEVVD 324 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCC--CCcchhhhcchHHHHhCCCcCCCHHHHHH
Confidence 399999999999999885 899999999999999999887 43211 11111111111111111346789999999
Q ss_pred HHHHCCCeEEEEEecC-eE-----EEEEEecCC
Q 018740 323 LCRACGLVDFKCTRNR-GF-----VMFTATKPS 349 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g-~~-----~~~~a~kp~ 349 (351)
+++++||++++....+ .. .++.++|++
T Consensus 325 ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 325 LAGSAGLALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp HHHTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred HHHHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence 9999999998865543 33 666777664
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=162.43 Aligned_cols=165 Identities=15% Similarity=0.267 Sum_probs=124.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC--------------C-----------
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------------P----------- 228 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~--------------~----------- 228 (351)
...++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++....+. +
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 345577999999999999999888764 58999999999999999887543000 0
Q ss_pred -CCCe-EEEEecCCCCC-CCC---CceeeEEeccccc----cCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHH
Q 018740 229 -KENF-LLVRADISRLP-FAS---SSIDAVHAGAAIH----CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298 (351)
Q Consensus 229 -~~~i-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~ 298 (351)
..++ .++.+|+.+.+ +++ ++||+|++..+++ |++++..+++++.++|||||++++.++........
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~---- 207 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI---- 207 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc----
Confidence 0027 89999998864 355 8899999999999 66678899999999999999999988654321000
Q ss_pred HHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEecC-----------eEEEEEEecCCC
Q 018740 299 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-----------GFVMFTATKPSQ 350 (351)
Q Consensus 299 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g-----------~~~~~~a~kp~~ 350 (351)
.........++.+++.++++++||++++..... ...++.++|+..
T Consensus 208 -------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 208 -------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp -------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred -------CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 011112346799999999999999998855432 467778888763
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=163.25 Aligned_cols=177 Identities=13% Similarity=0.188 Sum_probs=131.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++... +. ..+++++.+|+.+ +++.
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~-~~~~ 248 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-GL-SDRVDVVEGDFFE-PLPR 248 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-TC-TTTEEEEECCTTS-CCSS
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc-CC-CCceEEEeCCCCC-CCCC
Confidence 3445555666678999999999999999999988789999999 99999999988765 22 3489999999876 3333
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeec-cCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
.||+|++.+++||++++. .++++++++|+|||.+++.++. .... ....+........... .+...++.+++.++
T Consensus 249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~l 325 (360)
T 1tw3_A 249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN-SFNEQFTELDLRMLVF-LGGALRTREKWDGL 325 (360)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGG-CCSHHHHHHHHHHHHH-HSCCCCBHHHHHHH
T ss_pred -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCC-CCcchhhhccHHHhhh-cCCcCCCHHHHHHH
Confidence 499999999999999874 8999999999999999998876 3211 1111111111111111 13467899999999
Q ss_pred HHHCCCeEEEEEecC-e-----EEEEEEecCCC
Q 018740 324 CRACGLVDFKCTRNR-G-----FVMFTATKPSQ 350 (351)
Q Consensus 324 l~~aGf~~v~~~~~g-~-----~~~~~a~kp~~ 350 (351)
++++||++++....+ . ..++.++|+..
T Consensus 326 l~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~~ 358 (360)
T 1tw3_A 326 AASAGLVVEEVRQLPSPTIPYDLSLLVLAPAAT 358 (360)
T ss_dssp HHHTTEEEEEEEEEECSSSSCEEEEEEEEEC--
T ss_pred HHHCCCeEEEEEeCCCCcccCccEEEEEEeCCC
Confidence 999999998865443 2 67777888753
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=157.75 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=122.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PF 244 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~ 244 (351)
.+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++ .++.+..+|+.++ ++
T Consensus 43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~ 111 (227)
T 3e8s_A 43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKV 111 (227)
T ss_dssp HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCS
T ss_pred HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhccccc
Confidence 344444444568999999999999999999865 999999999999999984 4667888888766 54
Q ss_pred CC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH----HHHHhh--ccCCccCCCH
Q 018740 245 AS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL----RQNMMQ--ISGSYTFLSE 317 (351)
Q Consensus 245 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~s~ 317 (351)
.. ++||+|++..+++ ..++..+++++.++|+|||++++.+++....... .+...+ ...... ...+..+++.
T Consensus 112 ~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 112 PVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp CCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCH
T ss_pred ccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecH
Confidence 44 4599999999999 7899999999999999999999999876432111 000000 000000 1123456799
Q ss_pred HHHHHHHHHCCCeEEEEEec-------CeEEEEEEecC
Q 018740 318 REIEDLCRACGLVDFKCTRN-------RGFVMFTATKP 348 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~~~~-------g~~~~~~a~kp 348 (351)
+++.++|+++||++++.... ....+++++||
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 99999999999999885531 12456667665
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=154.79 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=119.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC--CCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~--lp~~ 245 (351)
.+.+.+. .++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++ ...++.+|+.+ .+++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~ 90 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYE 90 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCC
Confidence 4455554 567899999999999999999884 5999999999999999864 23688999876 6677
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHH-HHHh------hccCCccCCCHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMM------QISGSYTFLSER 318 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~s~~ 318 (351)
+++||+|++..+++|++++..+++++.++|+|||.+++.+++.... ....... ..+. ....+..+++.+
T Consensus 91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI----SVLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH----HHHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH----HHHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 8899999999999999999999999999999999999998875321 1111110 0000 012345778999
Q ss_pred HHHHHHHHCCCeEEEEEe
Q 018740 319 EIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~~~~ 336 (351)
++.++++++||++++...
T Consensus 167 ~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEe
Confidence 999999999999888543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=160.81 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=135.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+......+|||||||+|.++..+++++|..+++..|. |.+++.+++++... ..++++++.+|+...|.+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~~- 243 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPLP- 243 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC-
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCCC-
Confidence 4455555656677999999999999999999999889999997 88999999887654 258999999999876644
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+|+|++.++||+++|+. .+|+++++.|+|||.+++.+...+.. ...+..........-....-..++.++++++|
T Consensus 244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~-~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll 321 (353)
T 4a6d_A 244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED-RRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL 321 (353)
T ss_dssp -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT-SCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 479999999999999885 78999999999999999998775432 22233222222111111133457999999999
Q ss_pred HHCCCeEEEEEecC-eEEEEEEecCC
Q 018740 325 RACGLVDFKCTRNR-GFVMFTATKPS 349 (351)
Q Consensus 325 ~~aGf~~v~~~~~g-~~~~~~a~kp~ 349 (351)
+++||+++++...+ .+.++.|+|..
T Consensus 322 ~~AGf~~v~v~~~~~~~~~i~ArKgt 347 (353)
T 4a6d_A 322 SSAGFRDFQFKKTGAIYDAILARKGT 347 (353)
T ss_dssp HHHTCEEEEEECCSSSCEEEEEECCC
T ss_pred HHCCCceEEEEEcCCceEEEEEEecC
Confidence 99999999976554 56778899864
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=161.56 Aligned_cols=174 Identities=16% Similarity=0.085 Sum_probs=130.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+...+...+ .+|||||||+|.++..+++..+..+++++|+ +.+++.+++++... +. ..+++++.+|+.+ +++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-LA-GERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-HH-TTSEEEEESCTTT-CCC
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-CC-CCcEEEecCCCCC-CCC
Confidence 345555555545 8999999999999999999988789999999 99999999987653 11 3679999999977 554
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
++||+|++.+++||++++. .+|++++++|+|||++++.++..+.... +..................++.+++.++
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~e~~~l 308 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVLWDVHLFMACAGRHRTTEEVVDL 308 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHHHHHHHHHHHSCCCCBHHHHHHH
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHHhhhHhHhhCCCcCCCHHHHHHH
Confidence 6799999999999998876 9999999999999999999876543211 2211111111111012345699999999
Q ss_pred HHHCCCeEEEEEec-CeEEEEEEec
Q 018740 324 CRACGLVDFKCTRN-RGFVMFTATK 347 (351)
Q Consensus 324 l~~aGf~~v~~~~~-g~~~~~~a~k 347 (351)
++++||++++.... +...++.++|
T Consensus 309 l~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 309 LGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999886654 4456666665
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=165.23 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=125.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~ 254 (351)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++... +. ..+++++.+|+.+. |++ ++||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL-SG-SERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC-TT-GGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc-Cc-ccceEEEEccccccCCCCC-CCcCEEEE
Confidence 467999999999999999999988889999999 99999999988765 11 35899999999885 455 78999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHH-HH-HHHHH-hhccCCccCCCHHHHHHHHHHCCC
Q 018740 255 GAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RL-LRQNM-MQISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 255 ~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~s~~~l~~ll~~aGf 329 (351)
.+++||++++. .+|++++++|+|||.+++.++..+......... .. ....+ .........++.+++.++++++||
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 99999998774 789999999999999999887765332111110 00 11111 112234457799999999999999
Q ss_pred eEEEEEe-cCe-EEEEEEec
Q 018740 330 VDFKCTR-NRG-FVMFTATK 347 (351)
Q Consensus 330 ~~v~~~~-~g~-~~~~~a~k 347 (351)
+++++.. .+. ..++.++|
T Consensus 335 ~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 335 EVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp EESCCCCCBTTTBEEEEEEE
T ss_pred eEEEEEeCCCCCceEEEEee
Confidence 9988652 232 44444443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=146.00 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=116.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG- 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~- 255 (351)
++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++ ..++.++.+|+..+++++++||+|++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSAG 115 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHh--------CCCCcEEEcccccCCCCCCceeEEEECC
Confidence 578999999999999999999865 999999999999999986 456899999999988888899999998
Q ss_pred cccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 256 AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 256 ~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
.+++|+.. ...+++++.++|+|||.+++..+... .++.+++.++++++||++++
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~------------------------~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR------------------------GWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS------------------------SCCHHHHHHHHHHHTEEEEE
T ss_pred cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC------------------------CcCHHHHHHHHHHcCCEEee
Confidence 78999853 47899999999999999999776421 25789999999999999887
Q ss_pred EEec---------CeEEEEEEecC
Q 018740 334 CTRN---------RGFVMFTATKP 348 (351)
Q Consensus 334 ~~~~---------g~~~~~~a~kp 348 (351)
.... ..+.+++++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 172 AFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp EESSTTCCBCCTTCSEEEEEEEEC
T ss_pred eecccccCcCCCCCcEEEEEEecC
Confidence 5432 34667777764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=166.29 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=113.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC----------------------------
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---------------------------- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---------------------------- 228 (351)
++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++... +..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY-LSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh-hhhhccccccccccccccccccccccccccc
Confidence 578999999999999999999966679999999999999999876543 100
Q ss_pred ----------------------------CCCeEEEEecCCCCC-----CCCCceeeEEeccccccCC------ChHHHHH
Q 018740 229 ----------------------------KENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWS------SPSTGVA 269 (351)
Q Consensus 229 ----------------------------~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~ 269 (351)
..++.+.++|+...+ +.+++||+|+|..+++|+. ++..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 148999999997654 5678999999999998874 6779999
Q ss_pred HHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH--CCCeEEEEE
Q 018740 270 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA--CGLVDFKCT 335 (351)
Q Consensus 270 ~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~--aGf~~v~~~ 335 (351)
+++++|+|||+|++.....+.+.............+. ...+.++++..+|.+ +||+.++.+
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~-----~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY-----RIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHH-----HCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhh-----cEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999976543221111111111222221 123457899999999 999877744
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=156.15 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=111.8
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 259 (351)
+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..++.++++|+.++++++++||+|++.. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSIF--C 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCTTTCSEEEEEC--C
T ss_pred CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCcCCccEEEEEh--h
Confidence 999999999999999998865 9999999999999999998776 4589999999999988889999999954 4
Q ss_pred cC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 260 CW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 260 h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
|+ .++..+++++.++|+|||.+++.++..+... + .......+..+++.+++.++++ ||++++.
T Consensus 104 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----Y------NTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----G------TSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----C------CCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 44 3667999999999999999999998765321 0 0011123456899999999999 9998873
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-18 Score=159.29 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=124.9
Q ss_pred HHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+...+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ |++
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p 260 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVP 260 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCC
Confidence 34444444 45568999999999999999999998889999999 888877654 4789999999987 666
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchH--HH-HHHHHHhhccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF--SR-LLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~~~l 320 (351)
++ |+|++.+++||++++. .+|++++++|+|||++++.+...+........ .. ...............++.+++
T Consensus 261 ~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~ 338 (368)
T 3reo_A 261 KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338 (368)
T ss_dssp CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH
T ss_pred CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH
Confidence 54 9999999999998775 78999999999999999988775432211111 11 111111111123456799999
Q ss_pred HHHHHHCCCeEEEEEe-cCeEEEEEEecC
Q 018740 321 EDLCRACGLVDFKCTR-NRGFVMFTATKP 348 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~-~g~~~~~~a~kp 348 (351)
.++++++||++++... .+...++.+.|+
T Consensus 339 ~~ll~~AGF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 339 QALAMASGFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence 9999999999998654 344455555554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=154.47 Aligned_cols=146 Identities=17% Similarity=0.107 Sum_probs=114.6
Q ss_pred CCCeEEEEcCcc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+..+|||||||+ |.++..+.+..+..+|+|+|+|+.|++.|++++.. ..++.++.+|+.+.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhc
Confidence 347999999999 99988888777777999999999999999998743 368999999997631
Q ss_pred -CCCCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 244 -FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
++..+||+|++..++||+++ +..+|++++++|+|||+|++.+...+. . .........+........+++.+++
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--L--PAQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--C--HHHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--h--HHHHHHHHHHHhcCCCCccCCHHHH
Confidence 23358999999999999987 789999999999999999999987642 1 1112222222221224567899999
Q ss_pred HHHHHHCCCeEEE
Q 018740 321 EDLCRACGLVDFK 333 (351)
Q Consensus 321 ~~ll~~aGf~~v~ 333 (351)
.+++ .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=156.98 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=112.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..++.++++|+.++++ +++||+|++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~-~~~fD~i~~~~ 192 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI-QENYDFIVSTV 192 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCGGGCCC-CSCEEEEEECS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHc----CCceEEEEeccccccc-cCCccEEEEcc
Confidence 578999999999999999999976 9999999999999999998876 3489999999999876 78999999999
Q ss_pred ccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
+++|++++ ..+++++.++|+|||.+++........... .......++.+++.++++. |+++..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 193 VFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC-------------PLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp SGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------SSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC-------------CCCccccCCHHHHHHHhcC--CEEEEE
Confidence 99999655 499999999999999988876654321111 1123456788999999865 877664
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=160.82 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=106.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC----------------CCC-----------C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFP-----------K 229 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----------------g~~-----------~ 229 (351)
++.+|||||||+|.+...++.. ...+|+|+|+|+.|++.|++++.... +.. .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5779999999999954433332 23499999999999999998654310 000 0
Q ss_pred CCeEEEEecCCC-CCC-----CCCceeeEEecccccc----CCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH
Q 018740 230 ENFLLVRADISR-LPF-----ASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (351)
Q Consensus 230 ~~i~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (351)
..+.++.+|+.+ +|+ ++++||+|+++.+++| ++++..+|++++++|||||+|++.......+...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~----- 224 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA----- 224 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE-----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc-----
Confidence 015677789987 654 3467999999999999 6678899999999999999999976443211000
Q ss_pred HHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 300 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
........+++.+++.++|+++||++++..
T Consensus 225 ------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 225 ------GEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp ------TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ------CCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 011112457899999999999999988743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-19 Score=151.77 Aligned_cols=152 Identities=19% Similarity=0.255 Sum_probs=115.7
Q ss_pred CCCCeEEEEcCccCHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 176 VLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.++.+|||+|||+|.+ ...++..+. +|+|+|+|+.+++.+++++... ..++.++++|+.++++++++||+|++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEEE
Confidence 3467999999999997 455555544 9999999999999999988776 46789999999999988899999999
Q ss_pred ccccccC--CChHHHHHHHHhcccCCcEEEEEeeccCCCCCc--chHHHHHHHHHhh-ccCCccCCCHHHHHHHHHHCCC
Q 018740 255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQ-ISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 255 ~~vl~h~--~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~s~~~l~~ll~~aGf 329 (351)
..+++|+ .++..+++++.++|+|||.+++.++........ .++.......... .+...++++.+++.++++++||
T Consensus 96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCc
Confidence 9999999 577899999999999999999999875432110 0000000000000 1112358899999999999999
Q ss_pred eEEE
Q 018740 330 VDFK 333 (351)
Q Consensus 330 ~~v~ 333 (351)
...+
T Consensus 176 ~~~~ 179 (209)
T 2p8j_A 176 LFKE 179 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7665
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=150.06 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=123.5
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+.......++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++... ..++.++++|+.+++++ ++
T Consensus 33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~ 105 (252)
T 1wzn_A 33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NE 105 (252)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SC
T ss_pred HHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhcccC-CC
Confidence 33334445678999999999999999999865 9999999999999999988776 45799999999988764 68
Q ss_pred eeeEEecc-ccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCC--C-Cc-------------------chHHHHHH-
Q 018740 249 IDAVHAGA-AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGP--F-NL-------------------IPFSRLLR- 302 (351)
Q Consensus 249 fD~V~~~~-vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~--~-~~-------------------~~~~~~~~- 302 (351)
||+|++.. .++|+. ++..+++++.++|+|||.+++..++.... . .. .+......
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRF 185 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeeh
Confidence 99999874 455554 45689999999999999999877652100 0 00 00000000
Q ss_pred ----HHHhh--------ccCCccCCCHHHHHHHHHHCCCeEEEEEec--------CeEEEEEEecCC
Q 018740 303 ----QNMMQ--------ISGSYTFLSEREIEDLCRACGLVDFKCTRN--------RGFVMFTATKPS 349 (351)
Q Consensus 303 ----~~~~~--------~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~--------g~~~~~~a~kp~ 349 (351)
..... ...+.++++.+++. +|+++||++++.... ....+++++|++
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~~ 251 (252)
T 1wzn_A 186 KRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAKS 251 (252)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECCC
T ss_pred eeeeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEeec
Confidence 00000 01234689999997 899999998886432 346778888874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=161.48 Aligned_cols=170 Identities=15% Similarity=0.093 Sum_probs=122.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++.+|||||||+|.++..+++.++..+++++|+ +.++. ++++... + ...+++++.+|+. .+.+
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~-~-~~~~v~~~~~d~~-~~~p- 246 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP-D-VAGRWKVVEGDFL-REVP- 246 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG-G-GTTSEEEEECCTT-TCCC-
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc-C-CCCCeEEEecCCC-CCCC-
Confidence 3455555666678999999999999999999988889999999 44444 2222111 1 1467999999996 3444
Q ss_pred CceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
+||+|++.+++||++|+ ..+|++++++|||||++++.++..+.... +..................++.+++.+++
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~--~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 323 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND--AHQSKEMDFMMLAARTGQERTAAELEPLF 323 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSS--CCHHHHHHHHHHHTTSCCCCBHHHHHHHH
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhhhcChhhhhcCCCcCCCHHHHHHHH
Confidence 89999999999999988 59999999999999999998876543321 11111111111111244577999999999
Q ss_pred HHCCCeEEEEEecC-eEEEEEEe
Q 018740 325 RACGLVDFKCTRNR-GFVMFTAT 346 (351)
Q Consensus 325 ~~aGf~~v~~~~~g-~~~~~~a~ 346 (351)
+++||++++....+ ...++.++
T Consensus 324 ~~aGf~~~~~~~~~~~~~vie~~ 346 (348)
T 3lst_A 324 TAAGLRLDRVVGTSSVMSIAVGV 346 (348)
T ss_dssp HHTTEEEEEEEECSSSCEEEEEE
T ss_pred HHCCCceEEEEECCCCcEEEEEE
Confidence 99999999977644 34444444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=159.98 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=123.0
Q ss_pred HHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~ 267 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ 267 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC
Confidence 4444443 44568999999999999999999998889999999 989887764 3679999999987 6554
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchH---HHHHHHHHhhccCCccCCCHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
||+|++.+++||++|+. .+|++++++|+|||.+++.++..+.... .+. .............+...++.+++.
T Consensus 268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~ 344 (372)
T 1fp1_D 268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPN-TSEESKLVSTLDNLMFITVGGRERTEKQYE 344 (372)
T ss_dssp --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCC-SSHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCc-cchHHHHHHHhhHHHHhccCCccCCHHHHH
Confidence 99999999999999988 9999999999999999998876543211 111 111111110001123456999999
Q ss_pred HHHHHCCCeEEEEEe--cCeEEEEEEec
Q 018740 322 DLCRACGLVDFKCTR--NRGFVMFTATK 347 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~--~g~~~~~~a~k 347 (351)
++++++||++++... .+.+.++.++|
T Consensus 345 ~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 345 KLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 999999999988655 34245555543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=150.75 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=100.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... .++.++++|+.+++ ++
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence 4455566666778999999999999999999875 9999999999999999986654 58999999999988 67
Q ss_pred CceeeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeec
Q 018740 247 SSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++||+|++..+++|++++ ..+++++.++|+|||.+++.++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 899999999999999998 46799999999999999998875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=155.81 Aligned_cols=168 Identities=19% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
..+...+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ |++
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p 258 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVP 258 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCC
Confidence 34444444 55678999999999999999999998889999999 888877654 4789999999987 766
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHH---HHHHHHHhhccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS---RLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~l 320 (351)
.+ |+|++.+++||+++.. .+|++++++|+|||++++.+...+......... ......+.........++.+++
T Consensus 259 ~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 336 (364)
T 3p9c_A 259 SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF 336 (364)
T ss_dssp CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH
T ss_pred CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH
Confidence 54 9999999999998764 889999999999999999888764322111111 1111111111224456799999
Q ss_pred HHHHHHCCCeEEEEEe-cCeEEEEEEec
Q 018740 321 EDLCRACGLVDFKCTR-NRGFVMFTATK 347 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~-~g~~~~~~a~k 347 (351)
.++++++||++++... .+...++.+.|
T Consensus 337 ~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 337 QALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 9999999999998654 34444444443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=155.40 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=118.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-CCCceeeEEe
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~~fD~V~~ 254 (351)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... +. ..++.++++|+.++++ ++++||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM-KR-RFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS-CC-SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhc-CC-CccEEEEECCccccccCCCCCcCEEEE
Confidence 357899999999999999888875 458999999999999999988765 11 2479999999999887 5789999999
Q ss_pred cccccc----CCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH------------------------H-
Q 018740 255 GAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN------------------------M- 305 (351)
Q Consensus 255 ~~vl~h----~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~------------------------~- 305 (351)
..++|| ..++..+|+++.++|+|||.+++.+++.+. ....+... +
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 213 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYR 213 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH------HHHHHccCccCCeeEEEEeCccccccccccceEE
Confidence 999987 456779999999999999999999887421 10000000 0
Q ss_pred ---hh--ccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 306 ---MQ--ISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 306 ---~~--~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
.. ...+..+++.+++.++++++||++++...
T Consensus 214 ~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 214 FTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp EEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred EEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 00 01123578999999999999999988543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=142.33 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=113.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
......+...+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++... + ..+++++.+|+.+.
T Consensus 26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-V--ARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH-T--CTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEeCChhhh
Confidence 44445667777777889999999999999999999987779999999999999999998876 2 37899999999665
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
....++||+|++..+++ ++..+++++.++|+|||++++.....+ +.+++.+
T Consensus 103 ~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------------~~~~~~~ 153 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--------------------------TLTKAVE 153 (204)
T ss_dssp CTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--------------------------HHHHHHH
T ss_pred hhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--------------------------cHHHHHH
Confidence 43447899999988775 788999999999999999999765421 3457888
Q ss_pred HHHHCCC
Q 018740 323 LCRACGL 329 (351)
Q Consensus 323 ll~~aGf 329 (351)
+++++||
T Consensus 154 ~l~~~g~ 160 (204)
T 3e05_A 154 FLEDHGY 160 (204)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 9999998
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=144.03 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=114.3
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFA 245 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~ 245 (351)
...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... .++.++.+|+.. +++.
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~ 141 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC
Confidence 4445556788999999999999999999854569999999999999999886543 789999999988 6766
Q ss_pred CCceeeEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++||+|+ ++++++ ..+++++.++|+|||.+++...... .....+. . .+..+++.
T Consensus 142 -~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~-~--------------~~~~~~l~- 198 (230)
T 1fbn_A 142 -EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARS-IDVTKDP-K--------------EIFKEQKE- 198 (230)
T ss_dssp -CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG-TCSSSCH-H--------------HHHHHHHH-
T ss_pred -ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCC-CCCCCCH-H--------------HhhHHHHH-
Confidence 7899999 566777 7889999999999999999732211 1111111 0 11236777
Q ss_pred HHHHCCCeEEEEEecCe----EEEEEEecCC
Q 018740 323 LCRACGLVDFKCTRNRG----FVMFTATKPS 349 (351)
Q Consensus 323 ll~~aGf~~v~~~~~g~----~~~~~a~kp~ 349 (351)
+|+++||++++...... +.+++++|+.
T Consensus 199 ~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 199 ILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG 229 (230)
T ss_dssp HHHHHTEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred HHHHCCCEEEEEEccCCCccceEEEEEEeCC
Confidence 89999999888665433 5777777754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=160.17 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=109.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC----CCCeEEEEecC------CCC--CC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KENFLLVRADI------SRL--PF 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~----~~~i~~~~~d~------~~l--p~ 244 (351)
++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++.... +.. ..++.+.+.|+ .++ ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~-~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKL-NSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH-CC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhc-cccccccccccchhhhhcccchhhhhhhccc
Confidence 46799999999998666565554 348999999999999999988765 110 01367888887 322 34
Q ss_pred CCCceeeEEeccccccC---CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcc-----------hHHHHH---H-----
Q 018740 245 ASSSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLL---R----- 302 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~---~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-----------~~~~~~---~----- 302 (351)
++++||+|+|..++||+ .+...+|++++++|||||++++.+++.+...... .....+ .
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 57899999999999886 3557999999999999999999998643211000 000000 0
Q ss_pred H--HH-hhc-cC--CccCCCHHHHHHHHHHCCCeEEEEEec
Q 018740 303 Q--NM-MQI-SG--SYTFLSEREIEDLCRACGLVDFKCTRN 337 (351)
Q Consensus 303 ~--~~-~~~-~~--~~~~~s~~~l~~ll~~aGf~~v~~~~~ 337 (351)
. .+ ... .. ...+.+.+++.++++++||++++....
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0 00 000 00 123677899999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=150.04 Aligned_cols=146 Identities=15% Similarity=0.047 Sum_probs=113.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC-----Cce
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-----SSI 249 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~-----~~f 249 (351)
..++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++. ..++.++++|+.+++... ..|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCc
Confidence 34577999999999999999999987 99999999999999998752 358999999998865432 249
Q ss_pred eeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH----------HhhccCCccCCCH
Q 018740 250 DAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----------MMQISGSYTFLSE 317 (351)
Q Consensus 250 D~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~ 317 (351)
|+|++..++||++ ++..+++++.++|||||++++.++.... ..++..+... ..........++.
T Consensus 126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC----IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTA 201 (245)
T ss_dssp CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH----HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCH
T ss_pred cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc----cHHHHHHHhCCCCCchhhhhccccCCCCCccCH
Confidence 9999999999998 7889999999999999999998876431 1122111111 1111112235799
Q ss_pred HHHHHHHHHCCCeEEEE
Q 018740 318 REIEDLCRACGLVDFKC 334 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v~~ 334 (351)
+++.+++ +||++++.
T Consensus 202 ~~~~~~~--aGf~~~~~ 216 (245)
T 3ggd_A 202 EDIELYF--PDFEILSQ 216 (245)
T ss_dssp HHHHHHC--TTEEEEEE
T ss_pred HHHHHHh--CCCEEEec
Confidence 9999999 99999874
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=142.03 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... + ..++.++.+|+.+.+ +++||+|+++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~--~~~fD~i~~~ 132 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALN-G--IYDIALQKTSLLADV--DGKFDLIVAN 132 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-T--CCCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc-C--CCceEEEeccccccC--CCCceEEEEC
Confidence 357899999999999999988864 459999999999999999998876 2 344999999997754 5889999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
..++++ ..+++++.++|+|||.+++.++... +.+++.++++++||++++..
T Consensus 133 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 133 ILAEIL---LDLIPQLDSHLNEDGQVIFSGIDYL--------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp SCHHHH---HHHGGGSGGGEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred CcHHHH---HHHHHHHHHhcCCCCEEEEEecCcc--------------------------cHHHHHHHHHHcCCceEEee
Confidence 888764 7889999999999999999766532 45688999999999999876
Q ss_pred ecCeE-EEEEEecCC
Q 018740 336 RNRGF-VMFTATKPS 349 (351)
Q Consensus 336 ~~g~~-~~~~a~kp~ 349 (351)
..+.| .++..++|.
T Consensus 184 ~~~~w~~~~~~~~~~ 198 (205)
T 3grz_A 184 RAGRWIGLAISRKHE 198 (205)
T ss_dssp EETTEEEEEEEECC-
T ss_pred ccCCEEEEEEecccc
Confidence 65555 444445443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=154.05 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=118.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLK 253 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEee
Confidence 3467999999999999999999988789999999 999887764 2569999999976 554 39999999
Q ss_pred cccccCCChH--HHHHHHHhcccC---CcEEEEEeeccCCCCCcc--hHHHHHHHHHhhccCCccCCCHHHHHHHHHHCC
Q 018740 256 AAIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 256 ~vl~h~~d~~--~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 328 (351)
+++||++|+. .+|++++++||| ||++++.++..+...... .............. ....++.+++.++++++|
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~g~~~t~~e~~~ll~~aG 332 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAG 332 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGG-TCCCEEHHHHHHHHHHTT
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhc-cCCCCCHHHHHHHHHHCC
Confidence 9999999988 999999999999 999999988764322110 11111111111111 134568999999999999
Q ss_pred CeEEEEEe-cCeEEEEEEe
Q 018740 329 LVDFKCTR-NRGFVMFTAT 346 (351)
Q Consensus 329 f~~v~~~~-~g~~~~~~a~ 346 (351)
|++++... .+...++.++
T Consensus 333 f~~~~~~~~~~~~~vie~~ 351 (352)
T 1fp2_A 333 FQHYKISPLTGFLSLIEIY 351 (352)
T ss_dssp CCEEEEEEEETTEEEEEEE
T ss_pred CCeeEEEecCCCcEEEEEe
Confidence 99988654 3444555554
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=167.36 Aligned_cols=164 Identities=10% Similarity=0.075 Sum_probs=124.7
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCC---CCCCCeEEEEecCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVRADIS 240 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g---~~~~~i~~~~~d~~ 240 (351)
..+.+...+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.|++.|++++....+ ....++.++++|+.
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 34556666655578899999999999999999987 445999999999999999987654211 12468999999999
Q ss_pred CCCCCCCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHH--------HH----HHh
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL--------RQ----NMM 306 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~--------~~----~~~ 306 (351)
++++.+++||+|++..+++|++++. .+++++.++|||| .+++.+++.+.. ..+..+ .. ...
T Consensus 789 dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN----~lF~~Lnp~tr~~dPd~~~~~~f 863 (950)
T 3htx_A 789 EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFN----TILQRSTPETQEENNSEPQLPKF 863 (950)
T ss_dssp SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGH----HHHTCC------------CCSSC
T ss_pred hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhh----hhhhhcccccccccccccccccc
Confidence 9999889999999999999999876 5899999999999 999998876321 111000 00 011
Q ss_pred hccCCccCCCHHHHHH----HHHHCCCeEEE
Q 018740 307 QISGSYTFLSEREIED----LCRACGLVDFK 333 (351)
Q Consensus 307 ~~~~~~~~~s~~~l~~----ll~~aGf~~v~ 333 (351)
....|...|+.++++. ++++.||.+.-
T Consensus 864 Rh~DHrFEWTReEFr~Wae~LAer~GYsVef 894 (950)
T 3htx_A 864 RNHDHKFEWTREQFNQWASKLGKRHNYSVEF 894 (950)
T ss_dssp SCSSCSCCBCHHHHHHHHHHHHHHTTEEEEE
T ss_pred cccCcceeecHHHHHHHHHHHHHhcCcEEEE
Confidence 2334556688888887 77788997644
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=135.41 Aligned_cols=134 Identities=17% Similarity=0.150 Sum_probs=108.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCC-CeEEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~-~i~~~~~d~~~l 242 (351)
.....+...+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++... | .. ++.++.+|+.+.
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~-g--~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTY-G--LSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-T--CTTTEEEEESCTTGG
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHc-C--CCCCEEEEeCchhhh
Confidence 334456667777778899999999999999999984 49999999999999999998776 2 34 899999999884
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
......||+|++...+ ++. +++++.++|+|||++++.....+ +..++.+
T Consensus 117 ~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~--------------------------~~~~~~~ 165 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE--------------------------SETLLTQ 165 (204)
T ss_dssp GTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH--------------------------HHHHHHH
T ss_pred cccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc--------------------------cHHHHHH
Confidence 3334579999987754 566 99999999999999999766421 2456778
Q ss_pred HHHHCCCeEEE
Q 018740 323 LCRACGLVDFK 333 (351)
Q Consensus 323 ll~~aGf~~v~ 333 (351)
++++.|+++..
T Consensus 166 ~l~~~g~~i~~ 176 (204)
T 3njr_A 166 LHARHGGQLLR 176 (204)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHhCCCcEEE
Confidence 88899988766
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=152.89 Aligned_cols=111 Identities=9% Similarity=0.197 Sum_probs=93.0
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~ 245 (351)
.+...+. .++++|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++.... ..++.++.+|+..+ +++
T Consensus 52 ~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~ 125 (236)
T 3orh_A 52 ALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLP 125 (236)
T ss_dssp HHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSC
T ss_pred HHHHhhc-cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhccccc
Confidence 3444433 4578999999999999999988764 58999999999999999998776 67889999988653 567
Q ss_pred CCceeeEEe-----ccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 246 SSSIDAVHA-----GAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 246 ~~~fD~V~~-----~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+++||.|+. ...++|+.++..++++++|+|||||+|++.
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 889999974 566788889999999999999999999874
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=146.06 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=107.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.+.+++... .....+++.++++|+.++|+++++ |.|
T Consensus 24 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 24 RSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp HTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred hccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEE
Confidence 345678999999999999999999977789999999999888644333221 001245899999999999987766 766
Q ss_pred Ee---cccc--ccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 253 HA---GAAI--HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 253 ~~---~~vl--~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
.. +..+ +|++++..+++++.++|||||.+++........ ...+.. ...+.....+..+.+..+++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~l~~~l~~a 174 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR-PSVPEV-------GEHPEPTPDSADEWLAPRYAEA 174 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT-TBCGGG-------TTCCCCCHHHHHHHHHHHHHHT
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc-cccccc-------ccCCccchHHHHHHHHHHHHHc
Confidence 63 3333 388999999999999999999999965443211 111110 0111111111234588899999
Q ss_pred CCeEEEEE
Q 018740 328 GLVDFKCT 335 (351)
Q Consensus 328 Gf~~v~~~ 335 (351)
||++.+..
T Consensus 175 Gf~i~~~~ 182 (218)
T 3mq2_A 175 GWKLADCR 182 (218)
T ss_dssp TEEEEEEE
T ss_pred CCCceeee
Confidence 99988754
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-17 Score=140.75 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+. .+++|+|+|+. ++.++.+|+.++|+++++||+|++.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence 456799999999999988773 38999999985 3457899999999888999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.++|| .++..+++++.++|+|||.+++.++.. .+.+.+++.++++++||++++..
T Consensus 123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~------------------------~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS------------------------RFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG------------------------GCSCHHHHHHHHHHTTEEEEEEE
T ss_pred hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC------------------------CCCCHHHHHHHHHHCCCEEEEEe
Confidence 99975 899999999999999999999987542 12388999999999999988855
Q ss_pred e-cCeEEEEEEecCC
Q 018740 336 R-NRGFVMFTATKPS 349 (351)
Q Consensus 336 ~-~g~~~~~~a~kp~ 349 (351)
. .+.+.++.++|.+
T Consensus 178 ~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 178 LTNSHFFLFDFQKTG 192 (215)
T ss_dssp CCSTTCEEEEEEECS
T ss_pred cCCCeEEEEEEEecC
Confidence 4 4456777777764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=135.42 Aligned_cols=119 Identities=15% Similarity=0.177 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC--eEEEEecCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISR 241 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~--i~~~~~d~~~ 241 (351)
...+.+...+...++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++... + ..+ +.++.+|+.+
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~-~--~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLN-N--LDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT-T--CTTSCEEEEECSTTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHc-C--CCccceEEEECchhc
Confidence 345667777777778899999999999999999884 49999999999999999998765 2 344 9999999977
Q ss_pred CCCCCCceeeEEecccccc-CCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LPFASSSIDAVHAGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h-~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
. .++++||+|++...++| ..+...+++++.++|+|||.+++.++..
T Consensus 114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 3 44678999999988887 3456799999999999999999988763
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=141.15 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=99.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+...+ .++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.++++... .+++.++.+|+.++
T Consensus 30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSC
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcC
Confidence 33445555555 34779999999999999999998753 899999999999999998653 36899999999999
Q ss_pred CCCCCceeeEEeccccccCC---------------ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 243 PFASSSIDAVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~---------------d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++++++||+|++..+++|+. ++..+++++.++|+|||.+++.++..
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 88889999999999987765 55799999999999999999988753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=134.33 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=106.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~ 244 (351)
...+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... +. ..++ ++.+|... ++.
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~~-~~~~d~~~~~~~ 90 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-GV-SDRI-AVQQGAPRAFDD 90 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT-TC-TTSE-EEECCTTGGGGG
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh-CC-CCCE-EEecchHhhhhc
Confidence 34556666777788999999999999999999876679999999999999999988775 22 2378 88888744 443
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
.+++||+|++..+++| ..+++++.++|+|||.+++.+...+ +...+..++
T Consensus 91 ~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~~ 140 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE--------------------------SEQMLWALR 140 (178)
T ss_dssp CCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH--------------------------HHHHHHHHH
T ss_pred cCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc--------------------------cHHHHHHHH
Confidence 3388999999999988 6789999999999999998766421 234666777
Q ss_pred HHCCCeEEE
Q 018740 325 RACGLVDFK 333 (351)
Q Consensus 325 ~~aGf~~v~ 333 (351)
++.|+....
T Consensus 141 ~~~~~~~~~ 149 (178)
T 3hm2_A 141 KQFGGTISS 149 (178)
T ss_dssp HHHCCEEEE
T ss_pred HHcCCeeEE
Confidence 888887655
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-18 Score=148.87 Aligned_cols=107 Identities=9% Similarity=0.212 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 253 (351)
.++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|+++.... ..++.++++|+.++ ++++++||+|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEEE
Confidence 4577999999999999999977653 48999999999999999987765 47899999999888 88889999999
Q ss_pred e-cccc--c--cCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 A-GAAI--H--CWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~-~~vl--~--h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+ .+.+ + |..++..++++++++|||||++++....
T Consensus 134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 9 5543 1 2223447799999999999999986543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-17 Score=151.68 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=117.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~~ 259 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLKW 259 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEcc
Confidence 457999999999999999999988889999999 788876653 3569999999987 655 499999999
Q ss_pred ccccCCChH--HHHHHHHhcccC---CcEEEEEeeccCCCCCc--chHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCC
Q 018740 257 AIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 257 vl~h~~d~~--~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 329 (351)
++||++|+. .+|++++++|+| ||++++.++..+..... ....................++.+++.++++++||
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 339 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF 339 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence 999999987 999999999999 99999988775432211 01111111111111113356799999999999999
Q ss_pred eEEEEEec-CeEEEEEEe
Q 018740 330 VDFKCTRN-RGFVMFTAT 346 (351)
Q Consensus 330 ~~v~~~~~-g~~~~~~a~ 346 (351)
++++.... +...++.++
T Consensus 340 ~~~~~~~~~~~~~vie~~ 357 (358)
T 1zg3_A 340 SSYKITPISGFKSLIEVY 357 (358)
T ss_dssp CEEEEEEETTTEEEEEEE
T ss_pred CeeEEEecCCCcEEEEEe
Confidence 99886554 444555444
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=141.28 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCCCC-CCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFA-SSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp~~-~~~fD~V~ 253 (351)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++ .+++.++++|+ ..+|++ +++||+|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~ 116 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV 116 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence 3478999999999999999999865 999999999999999987 46899999999 678888 88999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
+. .++..+++++.++|||||.++. .....+.+++.++++++||.++.
T Consensus 117 ~~------~~~~~~l~~~~~~LkpgG~l~~---------------------------~~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 117 SR------RGPTSVILRLPELAAPDAHFLY---------------------------VGPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp EE------SCCSGGGGGHHHHEEEEEEEEE---------------------------EESSSCCTHHHHHHHHTTCEEEE
T ss_pred eC------CCHHHHHHHHHHHcCCCcEEEE---------------------------eCCcCCHHHHHHHHHHCCCeEEE
Confidence 87 4778889999999999999991 11233556788889999998776
Q ss_pred EE
Q 018740 334 CT 335 (351)
Q Consensus 334 ~~ 335 (351)
..
T Consensus 164 ~~ 165 (226)
T 3m33_A 164 ED 165 (226)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-17 Score=135.80 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=97.2
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCce
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSI 249 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~f 249 (351)
++..++.+|||+|||. +++|+|+.|++.|+++.. .++.+.++|+.++++ ++++|
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence 3556789999999986 239999999999998742 358999999999887 78999
Q ss_pred eeEEeccccccC-CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCC
Q 018740 250 DAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 250 D~V~~~~vl~h~-~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 328 (351)
|+|++..++||+ +++..++++++++|||||++++..+...... ......+.+++.++|+++|
T Consensus 65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-----------------NNSKVKTASKLCSALTLSG 127 (176)
T ss_dssp EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----------------SSSSSCCHHHHHHHHHHTT
T ss_pred eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-----------------cccccCCHHHHHHHHHHCC
Confidence 999999999999 9999999999999999999999766533110 0223357899999999999
Q ss_pred C
Q 018740 329 L 329 (351)
Q Consensus 329 f 329 (351)
|
T Consensus 128 f 128 (176)
T 2ld4_A 128 L 128 (176)
T ss_dssp C
T ss_pred C
Confidence 9
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=143.67 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=91.5
Q ss_pred hccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
..+...++.+|||||||+|.++..+..+.+..+|+|+|+|+.|++.|+++++.. |. .+++++++|+.++| +++||
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-gl--~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-GV--DGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-TC--CSEEEEESCGGGGG--GCCCS
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-CC--CCeEEEECchhhCC--CCCcC
Confidence 356677899999999999987755544444669999999999999999998876 32 78999999999876 68999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|++... .+++..+++++.++|||||++++...
T Consensus 191 vV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998655 57899999999999999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=142.14 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=116.4
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+ .++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++..+ ...+.+..+|+.+. +++
T Consensus 112 ~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~----~~~v~~~~~d~~~~-~~~ 182 (254)
T 2nxc_A 112 KALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN----GVRPRFLEGSLEAA-LPF 182 (254)
T ss_dssp HHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT----TCCCEEEESCHHHH-GGG
T ss_pred HHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc----CCcEEEEECChhhc-CcC
Confidence 3444443 4578999999999999999999887 9999999999999999998876 22288999988662 346
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
++||+|+++...++ ...++.++.++|+|||+++++..... ..+++.+++++
T Consensus 183 ~~fD~Vv~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~--------------------------~~~~v~~~l~~ 233 (254)
T 2nxc_A 183 GPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILKD--------------------------RAPLVREAMAG 233 (254)
T ss_dssp CCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHH
T ss_pred CCCCEEEECCcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC--------------------------CHHHHHHHHHH
Confidence 78999999766554 46889999999999999999765421 35789999999
Q ss_pred CCCeEEEEEecCeEEEEEEec
Q 018740 327 CGLVDFKCTRNRGFVMFTATK 347 (351)
Q Consensus 327 aGf~~v~~~~~g~~~~~~a~k 347 (351)
+||++++....+.|..+.++|
T Consensus 234 ~Gf~~~~~~~~~~W~~l~~~k 254 (254)
T 2nxc_A 234 AGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp TTCEEEEEEEETTEEEEEEEC
T ss_pred CCCEEEEEeccCCeEEEEEEC
Confidence 999999988888888777775
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=133.73 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=108.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
......+...+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++... +. ..++.+..+|+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~- 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH-GL-GDNVTLMEGDAPE- 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT-TC-CTTEEEEESCHHH-
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc-CC-CcceEEEecCHHH-
Confidence 4445566666777778899999999999999999987 49999999999999999988765 11 2689999999876
Q ss_pred CCCC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 243 PFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 243 p~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
++++ ++||+|++..+++| ...+++++.++|+|||.+++..+..+ +..++.
T Consensus 94 ~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~~--------------------------~~~~~~ 144 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILLE--------------------------TKFEAM 144 (192)
T ss_dssp HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBHH--------------------------HHHHHH
T ss_pred hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCcc--------------------------hHHHHH
Confidence 2233 58999999888764 58899999999999999999766421 235788
Q ss_pred HHHHHCCCe
Q 018740 322 DLCRACGLV 330 (351)
Q Consensus 322 ~ll~~aGf~ 330 (351)
+++++.||.
T Consensus 145 ~~l~~~g~~ 153 (192)
T 1l3i_A 145 ECLRDLGFD 153 (192)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHCCCc
Confidence 899999994
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-16 Score=141.14 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=119.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+...+. .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++... + ..++.++++|+.+.
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~-~--~~~v~~~~~d~~~~ 171 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-A--IKNIHILQSDWFSA 171 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-T--CCSEEEECCSTTGG
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCceEEEEcchhhh
Confidence 334555666654 4567999999999999999998877779999999999999999998876 2 34799999999773
Q ss_pred CCCCCceeeEEec-------------cccccCC------------ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchH
Q 018740 243 PFASSSIDAVHAG-------------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297 (351)
Q Consensus 243 p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~ 297 (351)
+++++||+|+++ .+++|.+ +...+++++.++|+|||++++...
T Consensus 172 -~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------- 239 (276)
T 2b3t_A 172 -LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------- 239 (276)
T ss_dssp -GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------
T ss_pred -cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------
Confidence 346789999998 3555543 246789999999999999998521
Q ss_pred HHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEec
Q 018740 298 SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK 347 (351)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~k 347 (351)
+...+++.++++++||..++.. ..|.-.++.++|
T Consensus 240 ----------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 2356789999999999876643 356666666654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=142.55 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCCeEEEEcCcc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------CCCC
Q 018740 177 LGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~~ 247 (351)
...+|||||||+ |.....+.+..+..+|+++|.|+.|++.|++++... ...++.++++|+.+++ ...+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhhhccccccc
Confidence 346899999997 344444445567789999999999999999987653 1347999999998852 1134
Q ss_pred cee-----eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHH
Q 018740 248 SID-----AVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE 319 (351)
Q Consensus 248 ~fD-----~V~~~~vl~h~~d---~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 319 (351)
.|| .|+++.+|||++| +..+++++.+.|+|||+|++++...+.. ..........+......+.+++.++
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~~~~~~~~~~~~g~p~~~rs~~e 231 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQEVGRVAREYAARNMPMRLRTHAE 231 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHHHHHHHHHHHHTTCCCCCCCHHH
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHHHHHHHHHHHhcCCCCccCCHHH
Confidence 566 6889999999998 5689999999999999999998876521 1222333333333233467889999
Q ss_pred HHHHHHHCCCeEEE
Q 018740 320 IEDLCRACGLVDFK 333 (351)
Q Consensus 320 l~~ll~~aGf~~v~ 333 (351)
+..++. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999995 999766
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=135.94 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=112.5
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CCCCCC
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS 247 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~ 247 (351)
.+...+|.+|||+|||+|.++..+++. |+.++|+|+|+++.|++.+++++... .|+..+.+|... .+...+
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCC
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccc
Confidence 356788999999999999999999987 78889999999999999999886553 689999998865 355678
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
.+|+|++. +.|..++..++.++.+.|||||.+++......- . ... + ... ...+..+.|+++
T Consensus 147 ~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-----d--------~~~-p-~~~--~~~~ev~~L~~~ 207 (233)
T 4df3_A 147 GVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-----D--------VTT-E-PSE--VYKREIKTLMDG 207 (233)
T ss_dssp CEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-----H--------HHT-C-CCH--HHHHHHHHHHHT
T ss_pred eEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-----C--------CCC-C-hHH--HHHHHHHHHHHC
Confidence 89999863 445567789999999999999999987543210 0 000 0 000 012345678899
Q ss_pred CCeEEEEEecCe----EEEEEEe
Q 018740 328 GLVDFKCTRNRG----FVMFTAT 346 (351)
Q Consensus 328 Gf~~v~~~~~g~----~~~~~a~ 346 (351)
||++++...... +.++.++
T Consensus 208 GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 208 GLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp TCCEEEEEECTTTSTTEEEEEEC
T ss_pred CCEEEEEEccCCCCCceEEEEEE
Confidence 999988765433 5666664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=131.40 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .++.++++|+.+ ++++++||+|+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~-----~~~~~~~~d~~~-~~~~~~fD~i~~n 85 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H-----RGGNLVRADLLC-SINQESVDVVVFN 85 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C-----SSSCEEECSTTT-TBCGGGCSEEEEC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c-----cCCeEEECChhh-hcccCCCCEEEEC
Confidence 456799999999999999999887 99999999999987 1 468899999987 5666899999999
Q ss_pred cccccCCCh---------HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 256 AAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 256 ~vl~h~~d~---------~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
..+++.+++ ..+++++.+.| |||.+++..+.. ...+++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------------------~~~~~l~~~l~~ 138 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------------------NRPKEVLARLEE 138 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------------GCHHHHHHHHHH
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------------CCHHHHHHHHHH
Confidence 998877665 57889999999 999999977542 146789999999
Q ss_pred CCCeEEEE
Q 018740 327 CGLVDFKC 334 (351)
Q Consensus 327 aGf~~v~~ 334 (351)
+||..+..
T Consensus 139 ~gf~~~~~ 146 (170)
T 3q87_B 139 RGYGTRIL 146 (170)
T ss_dssp TTCEEEEE
T ss_pred CCCcEEEE
Confidence 99988763
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=142.48 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=106.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
..+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+++++.... +..++.++.+|+.+ +++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTT-CCC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECchhc-cCc
Confidence 45666677778889999999999999999987 556699999999999999999876530 14689999999987 566
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|++ |++++..+++++.++|+|||++++.++... ..+++.+.++
T Consensus 177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------------------------~~~~~~~~l~ 225 (275)
T 1yb2_A 177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD--------------------------QSEKTVLSLS 225 (275)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH--------------------------HHHHHHHHSG
T ss_pred CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHHHHHHH
Confidence 788999997 678899999999999999999999876421 1245667778
Q ss_pred HCCCeEEEEE
Q 018740 326 ACGLVDFKCT 335 (351)
Q Consensus 326 ~aGf~~v~~~ 335 (351)
++||..++..
T Consensus 226 ~~Gf~~~~~~ 235 (275)
T 1yb2_A 226 ASGMHHLETV 235 (275)
T ss_dssp GGTEEEEEEE
T ss_pred HCCCeEEEEE
Confidence 8899877643
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=142.26 Aligned_cols=153 Identities=23% Similarity=0.303 Sum_probs=112.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+. ++.+|||||||+|.++..+++.+. +++|+|+|+.+++.++++.. . .++++|+.++++++
T Consensus 46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~ 112 (260)
T 2avn_A 46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS 112 (260)
T ss_dssp HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence 44455554 578999999999999999999865 99999999999999998732 1 28899999999888
Q ss_pred CceeeEEeccccccC-CChHHHHHHHHhcccCCcEEEEEeeccCCCCCc---chHHHHHHHHHhhc--c--C-----Ccc
Q 018740 247 SSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFSRLLRQNMMQI--S--G-----SYT 313 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~-~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~--~--~-----~~~ 313 (351)
++||+|++..+++|+ +++..+|+++.++|+|||.+++.+++....... ...+.......... . . ...
T Consensus 113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSY 192 (260)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEE
T ss_pred CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEe
Confidence 999999999877766 789999999999999999999998874210000 00001111111110 0 0 112
Q ss_pred CCCHHHHHHHHHHCCCeEEEEE
Q 018740 314 FLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
+++.+++.++ +||++++..
T Consensus 193 ~~~~~~l~~l---aGf~~~~~~ 211 (260)
T 2avn_A 193 AFKPEDLDSL---EGFETVDIR 211 (260)
T ss_dssp CBCGGGGSSC---TTEEEEEEE
T ss_pred ccCHHHHHHh---cCceEEEEE
Confidence 6789999888 999988754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-16 Score=133.40 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=102.8
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.+.+..... .++.++.+|+... ++. ++
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~ 126 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EK 126 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cc
Confidence 3455688999999999999999998864569999999999887776655432 5788999998763 444 78
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH----HHH
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE----DLC 324 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~----~ll 324 (351)
||+|++.. .++ .+...++++++++|||||.+++...... . . ...+.+++. +.+
T Consensus 127 fD~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~----------------~----~-~~~~~~~~~~~~~~~l 183 (210)
T 1nt2_A 127 VDLIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARS----------------I----D-STAEPEEVFKSVLKEM 183 (210)
T ss_dssp EEEEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH----------------H----C-TTSCHHHHHHHHHHHH
T ss_pred eeEEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC----------------c----c-ccCCHHHHHHHHHHHH
Confidence 99999872 222 2234568999999999999999854310 0 1 112344432 237
Q ss_pred HHCCCeEEEEEecC----eEEEEEEec
Q 018740 325 RACGLVDFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 325 ~~aGf~~v~~~~~g----~~~~~~a~k 347 (351)
+++ |++++..... .+.+++++|
T Consensus 184 ~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 184 EGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp HTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred Hhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 888 9999876552 346666665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-16 Score=134.80 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=91.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~ 254 (351)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++... + ..++.++++|+..++ +++++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV-G--VPNIKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-C--CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc-C--CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 467999999999999999999987789999999999999999998876 2 368999999999877 77889999999
Q ss_pred ccccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+....+.. ....+++++.++|+|||.+++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 86543322 1257999999999999999997643
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=138.87 Aligned_cols=129 Identities=15% Similarity=0.011 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceeeE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~V 252 (351)
.++.+|||||||+|..+..++...+..+|+|+|+|+.|++.+++++... | ..+++++++|+.++++. +++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-Q--LENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-T--CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCEEEEeccHHHhcccccccCCccEE
Confidence 3577999999999999999997666679999999999999999988876 2 35799999999887753 5789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEE
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v 332 (351)
++.. +.++..+++++.++|+|||.+++..... .. . ..+++.+.++++||.++
T Consensus 146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~------~~--~----------------~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 146 TARA----VARLSVLSELCLPLVKKNGLFVALKAAS------AE--E----------------ELNAGKKAITTLGGELE 197 (240)
T ss_dssp EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-------CH--H----------------HHHHHHHHHHHTTEEEE
T ss_pred EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCC------ch--H----------------HHHHHHHHHHHcCCeEe
Confidence 9876 4678999999999999999998853210 00 0 12467788999999887
Q ss_pred EEE
Q 018740 333 KCT 335 (351)
Q Consensus 333 ~~~ 335 (351)
+..
T Consensus 198 ~~~ 200 (240)
T 1xdz_A 198 NIH 200 (240)
T ss_dssp EEE
T ss_pred EEE
Confidence 743
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=136.37 Aligned_cols=138 Identities=18% Similarity=0.160 Sum_probs=113.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++....| ..++.+..+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGG
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhh
Confidence 334456677777778899999999999999999998 6667999999999999999998765301 4689999999998
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
.++++++||+|++ +++++..+++++.++|+|||.+++.++..+ ...++.
T Consensus 160 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~ 208 (258)
T 2pwy_A 160 AELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT--------------------------QVLELV 208 (258)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH--------------------------HHHHHH
T ss_pred cCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH--------------------------HHHHHH
Confidence 8777889999997 567888999999999999999999876421 123566
Q ss_pred HHHHHCCCeEEE
Q 018740 322 DLCRACGLVDFK 333 (351)
Q Consensus 322 ~ll~~aGf~~v~ 333 (351)
+.++++||..++
T Consensus 209 ~~l~~~gf~~~~ 220 (258)
T 2pwy_A 209 RAAEAHPFRLER 220 (258)
T ss_dssp HHHTTTTEEEEE
T ss_pred HHHHHCCCceEE
Confidence 777889998766
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=144.45 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC----CCCCCeEEEEecCCCCC----CC--C
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----FPKENFLLVRADISRLP----FA--S 246 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g----~~~~~i~~~~~d~~~lp----~~--~ 246 (351)
++.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.++++...... ....++.++++|+..++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 46799999999999999998753 56999999999999999998765300 01347999999998876 53 4
Q ss_pred CceeeEEeccccccC-CC---hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH-------------Hh---
Q 018740 247 SSIDAVHAGAAIHCW-SS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-------------MM--- 306 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~-~d---~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-------------~~--- 306 (351)
++||+|++..++||+ .+ +..+|+++.++|+|||.+++.+++.+. ....+... +.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~f~~~~ 186 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE------LIRRLEASETESFGNEIYTVKFQKKG 186 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH------HHHHHTTSSSSEEECSSEEEEESCSS
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH------HHHHHHhhccCccCCeeEEEEeCCCC
Confidence 589999999999988 44 469999999999999999999886421 00000000 00
Q ss_pred ---------------hccCCccCCCHHHHHHHHHHCCCeEEEEEe
Q 018740 307 ---------------QISGSYTFLSEREIEDLCRACGLVDFKCTR 336 (351)
Q Consensus 307 ---------------~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~ 336 (351)
.........+.+++.+++++.||+++....
T Consensus 187 ~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~ 231 (313)
T 3bgv_A 187 DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT 231 (313)
T ss_dssp CCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred CCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence 000012246789999999999999988654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-15 Score=127.64 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=109.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+...+...++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.+++++... + ..++.++.+|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKF-N--IKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT--SSEEEEEECSHHHHHHHHHHHHHT-T--CCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHc-C--CCcEEEEECCccc-
Confidence 444556677777777889999999999999999983 459999999999999999998776 2 3689999999977
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
++++++||+|++..+ .++..+++++.++ |||.+++.++..+ +..++.+
T Consensus 95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~--------------------------~~~~~~~ 142 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE--------------------------NAAKIIN 142 (183)
T ss_dssp HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH--------------------------HHHHHHH
T ss_pred cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc--------------------------cHHHHHH
Confidence 666788999999888 6788999999999 9999999876421 1356888
Q ss_pred HHHHCCCeEEE
Q 018740 323 LCRACGLVDFK 333 (351)
Q Consensus 323 ll~~aGf~~v~ 333 (351)
.++++||.+..
T Consensus 143 ~l~~~g~~~~~ 153 (183)
T 2yxd_A 143 EFESRGYNVDA 153 (183)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCCeEEE
Confidence 99999986544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=132.78 Aligned_cols=130 Identities=13% Similarity=0.067 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeE
Q 018740 175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAV 252 (351)
Q Consensus 175 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V 252 (351)
..++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|++++... ..+++++++|+..+ ++++++||+|
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN----NSNVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT----TCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh----CCCcEEEeCCchhhhhcccCceeEE
Confidence 3457899999999 999999999984 349999999999999999998877 33899999997543 4556899999
Q ss_pred EeccccccCCC-------------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 253 HAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 253 ~~~~vl~h~~d-------------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
+++-.+++..+ ...+++++.++|+|||.+++..+...
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------ 183 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------ 183 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------------
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------------
Confidence 99876655433 36889999999999999999765420
Q ss_pred CCCHHHHHHHHHHCCCeEEEE
Q 018740 314 FLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~ 334 (351)
...+++.+++++.||.+...
T Consensus 184 -~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 184 -KLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp -HHHHHHHHHHHHTTCEEEEE
T ss_pred -hHHHHHHHHHHHcCCceEEE
Confidence 12467889999999976653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=139.01 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHHHhhhCCCCCCCeEEEEecCCCCCCC-CCcee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQESNFPKENFLLVRADISRLPFA-SSSID 250 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s-~~~~~~a---~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD 250 (351)
.++.+|||||||+|.++..+++..+..+|+|+|+| +.|++.| ++++... +..++.++++|+..+|.. .+.+|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---~~~~v~~~~~d~~~l~~~~~d~v~ 99 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---GLSNVVFVIAAAESLPFELKNIAD 99 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT---CCSSEEEECCBTTBCCGGGTTCEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEcCHHHhhhhccCeEE
Confidence 35779999999999999999987777799999999 7777776 6665544 246899999999998632 14455
Q ss_pred eEEecccc----cc-CCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 251 AVHAGAAI----HC-WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 251 ~V~~~~vl----~h-~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
.|.++... +| ..++..+|++++++|||||.+++.....+. ....++. .. .... ....++..+++.++++
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~--~~-~~~~--~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIK--KR-GLPL--LSKAYFLSEQYKAELS 173 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------------CCHHHHHSHHHHHHHH
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhchhh--hc-CCCC--CChhhcchHHHHHHHH
Confidence 55544321 11 134467899999999999999995443332 1111100 00 0000 0011122235999999
Q ss_pred HCCCeEEEEEec
Q 018740 326 ACGLVDFKCTRN 337 (351)
Q Consensus 326 ~aGf~~v~~~~~ 337 (351)
++||++.+....
T Consensus 174 ~aGf~v~~~~~~ 185 (225)
T 3p2e_A 174 NSGFRIDDVKEL 185 (225)
T ss_dssp HHTCEEEEEEEE
T ss_pred HcCCCeeeeeec
Confidence 999998875543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=134.05 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~ 254 (351)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++... + ..++.++++|+.+++ +++++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~-~--~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS-E--AQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS-C--CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc-C--CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 467999999999999999999987789999999999999999998776 2 468999999998876 67889999987
Q ss_pred ccccccCCC--------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d--------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+....+... ...+++++.++|+|||.+++.+..
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 654322211 257899999999999999997643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=136.28 Aligned_cols=137 Identities=23% Similarity=0.334 Sum_probs=112.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
......+...+...++.+|||+|||+|.++..+++. ++..+++++|+|+.+++.|++++... |. ..++.++.+|+.+
T Consensus 79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA-GF-DDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH-TC-TTTEEEECSCGGG
T ss_pred HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc-CC-CCceEEEECchhh
Confidence 444567777778888999999999999999999998 76779999999999999999998876 22 2349999999986
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
. +++++||+|++ +.+++..+++++.++|+|||.+++..+..+ ...++.
T Consensus 157 ~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~ 204 (255)
T 3mb5_A 157 G-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN--------------------------QVMRLH 204 (255)
T ss_dssp C-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHHH
T ss_pred c-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH--------------------------HHHHHH
Confidence 4 56788999997 567888999999999999999999765421 134667
Q ss_pred HHHHHCC--CeEEE
Q 018740 322 DLCRACG--LVDFK 333 (351)
Q Consensus 322 ~ll~~aG--f~~v~ 333 (351)
+.+++.| |..++
T Consensus 205 ~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 205 EKLREFKDYFMKPR 218 (255)
T ss_dssp HHHHHTGGGBSCCE
T ss_pred HHHHHcCCCccccE
Confidence 7888888 86655
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=132.25 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 253 (351)
.++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++... + ..+++++++|+.+++ +++++||+|+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~~~~~~~fD~i~ 118 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEAL-G--LSGATLRRGAVAAVVAAGTTSPVDLVL 118 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHH-T--CSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHc-C--CCceEEEEccHHHHHhhccCCCccEEE
Confidence 457899999999999999887765 358999999999999999998877 2 368999999998764 3468899999
Q ss_pred eccccccC-CChHHHHHHHHh--cccCCcEEEEEeeccC
Q 018740 254 AGAAIHCW-SSPSTGVAEISR--VLRPGGVFVGTTYIVD 289 (351)
Q Consensus 254 ~~~vl~h~-~d~~~~l~~i~~--~LkpgG~li~~~~~~~ 289 (351)
+...+++. .+...+++++.+ +|+|||++++......
T Consensus 119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 99887775 577899999999 9999999999887654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-17 Score=140.79 Aligned_cols=153 Identities=17% Similarity=0.022 Sum_probs=96.9
Q ss_pred HHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.+.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++... ..++.++++|+.+ ++
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~-~~ 92 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF----GAVVDWAAADGIE-WL 92 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh----CCceEEEEcchHh-hh
Confidence 3455555544 5678999999999999999999987779999999999999999987765 2278889999877 55
Q ss_pred CC-----CceeeEEecccccc------CCCh--------------------HHHHHHHHhcccCCcEEEEEeeccCCCCC
Q 018740 245 AS-----SSIDAVHAGAAIHC------WSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFN 293 (351)
Q Consensus 245 ~~-----~~fD~V~~~~vl~h------~~d~--------------------~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 293 (351)
++ ++||+|+++..+++ +... ..+++++.++|+|||++++....
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------ 166 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG------ 166 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT------
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC------
Confidence 54 89999999644433 2211 67889999999999994443221
Q ss_pred cchHHHHHHHHHhhccCCccCCCHHHHHHHHH--HCCCeEEEEEe--cCeEEEEEEecCC
Q 018740 294 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCR--ACGLVDFKCTR--NRGFVMFTATKPS 349 (351)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~--~aGf~~v~~~~--~g~~~~~~a~kp~ 349 (351)
....+.+.++++ +.||..++... .+...++.++|+.
T Consensus 167 --------------------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 167 --------------------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp --------------------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred --------------------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 124567888899 99998776443 3455566666543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=133.74 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=107.9
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CCCCCC
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS 247 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~ 247 (351)
.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.+.+... .++.++.+|+.+ +++.++
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence 344566889999999999999999987 35569999999999888887766553 689999999987 455678
Q ss_pred ceeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 248 SIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
+||+|++... .++. ..++.++.++|||||++++.......... .+. ...+.. + .++|++
T Consensus 147 ~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~-~~~--------------~~~~~~-~-~~~l~~ 206 (233)
T 2ipx_A 147 MVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDST-ASA--------------EAVFAS-E-VKKMQQ 206 (233)
T ss_dssp CEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSS-SCH--------------HHHHHH-H-HHTTGG
T ss_pred cEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccC-CCH--------------HHHHHH-H-HHHHHH
Confidence 9999998544 2233 45688999999999999996554210000 000 001122 3 488899
Q ss_pred CCCeEEEEEecC----eEEEEEEecC
Q 018740 327 CGLVDFKCTRNR----GFVMFTATKP 348 (351)
Q Consensus 327 aGf~~v~~~~~g----~~~~~~a~kp 348 (351)
+||++++..... .+.++.++++
T Consensus 207 ~Gf~~~~~~~~~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 207 ENMKPQEQLTLEPYERDHAVVVGVYR 232 (233)
T ss_dssp GTEEEEEEEECTTTSSSEEEEEEEEC
T ss_pred CCCceEEEEecCCccCCcEEEEEEeC
Confidence 999998854432 2566666654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=131.57 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.....+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... + ..++.++.+|+.+.+
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNL-D--LHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHc-C--CCceEEEECCcccCC
Confidence 3345666777777889999999999999999999854 9999999999999999998876 2 358999999998876
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+++||+|++..+++|+++ ++.++|+|||++++..+.
T Consensus 139 ~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 66789999999999999976 578999999999998776
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=137.46 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=89.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF- 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~- 244 (351)
.+.+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++... ++..++.+++.
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~ 102 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAE 102 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeecccc
Confidence 45666777777889999999999999999999876 9999999999999999985432 23444444332
Q ss_pred ----CCCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ----ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ----~~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+++||+|++..+++|+.. ...+++++.++| |||+++++...
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 2578999999999999864 457899999999 99999998754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=129.72 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEe
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~ 254 (351)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++... + ..++++++.+...++ +.+++||+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~-~--~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDL-G--IENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHH-T--CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 357899999999999999999884 49999999999999999998876 2 378999998887753 44788999998
Q ss_pred c-ccccc-------C-CChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 G-AAIHC-------W-SSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~-~vl~h-------~-~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+ ..+++ . .+...+++++.++|||||.+++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 7 33332 1 23357889999999999999998764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=131.03 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=87.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++... + ..++.++.+|+.+++ +.++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~-~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL-K--LENIEPVQSRVEEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT-T--CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCeEEEecchhhCC-ccCCcCEEEEec
Confidence 367999999999999999999876779999999999999999988775 2 346999999998876 457899999754
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+.++..+++++.++|+|||.+++.
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 356789999999999999999986
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=127.74 Aligned_cols=115 Identities=9% Similarity=0.095 Sum_probs=93.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+...+.+..++.. ..+|||+|||+|.++..++...|..+|+++|+|+.|++.+++++... |. ..++.+ +|....
T Consensus 37 d~fY~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~-g~-~~~v~~--~d~~~~ 110 (200)
T 3fzg_A 37 NDFYTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL-KT-TIKYRF--LNKESD 110 (200)
T ss_dssp HHHHHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS-CC-SSEEEE--ECCHHH
T ss_pred HHHHHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-CC-CccEEE--eccccc
Confidence 4455666667644 77999999999999999999988889999999999999999998876 21 124555 666544
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+.++||+|++..++||+.+.+..+.++.+.|+|||+++--
T Consensus 111 -~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 111 -VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp -HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred -CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence 35688999999999999977778888999999999877643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=132.34 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=113.5
Q ss_pred HHHhccCCC-CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--C
Q 018740 168 LMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F 244 (351)
Q Consensus 168 ~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~ 244 (351)
.+..++... ++.+|||+|||+|.++..+++.++. +|+|+|+++.+++.|++++... +. ..++.++++|+.+++ +
T Consensus 39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~-~~-~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYN-QL-EDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHT-TC-TTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHC-CC-cccEEEEECcHHHhhhhh
Confidence 455556666 7889999999999999999998753 9999999999999999998876 22 347999999998875 4
Q ss_pred CCCceeeEEeccccccC-----C---------------ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH
Q 018740 245 ASSSIDAVHAGAAIHCW-----S---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN 304 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
++++||+|+++-.+.+. . +...+++++.++|+|||++++..+.
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 178 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------- 178 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------
Confidence 57899999997544322 1 2357899999999999999985321
Q ss_pred HhhccCCccCCCHHHHHHHHHHCCCeEEEEEec-------CeEEEEEEecC
Q 018740 305 MMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-------RGFVMFTATKP 348 (351)
Q Consensus 305 ~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-------g~~~~~~a~kp 348 (351)
....++..++++.||........ ...+++.++|.
T Consensus 179 ----------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 179 ----------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp ----------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred ----------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 13457888899999987663221 23455666654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=125.90 Aligned_cols=157 Identities=9% Similarity=0.019 Sum_probs=107.7
Q ss_pred HHHHhcc---CCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 167 ELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 167 ~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
..+...+ ...++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++...+.... ..++.++.+|+...
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~ 137 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFP 137 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCG
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccc
Confidence 4454444 3678999999999999999999876 5567999999999987665544433 36899999999764
Q ss_pred C---CCCCceeeEEeccccccCCChHHHH-HHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHH
Q 018740 243 P---FASSSIDAVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 318 (351)
Q Consensus 243 p---~~~~~fD~V~~~~vl~h~~d~~~~l-~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 318 (351)
. ...++||+|++.... ++....+ ..+.+.|||||.++++.....-. . . .. .... .+
T Consensus 138 ~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d-~------------t-~~-~~e~--~~ 197 (232)
T 3id6_C 138 QSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSID-V------------T-KD-PKEI--YK 197 (232)
T ss_dssp GGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC---------------------CC-SSSS--TT
T ss_pred hhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcc-c------------C-CC-HHHH--HH
Confidence 3 124689999987553 5655555 45566999999999975432100 0 0 00 0111 13
Q ss_pred HHHHHHHHCCCeEEEEEecC----eEEEEEEecC
Q 018740 319 EIEDLCRACGLVDFKCTRNR----GFVMFTATKP 348 (351)
Q Consensus 319 ~l~~ll~~aGf~~v~~~~~g----~~~~~~a~kp 348 (351)
+....|+++||++++..... .+.+++++|+
T Consensus 198 ~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 198 TEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp HHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence 45678888999999977653 3577777765
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-15 Score=134.28 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=110.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
.....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+|+.+++.|++++... +. ..++.++.+|+.+.
T Consensus 99 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 99 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-GL-IERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-TC-GGGEEEECCCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-CC-CCCEEEEECCHHHc
Confidence 34456677777778899999999999999999998 66679999999999999999988765 11 25799999999776
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHH
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 322 (351)
+++++||+|++ +.+++..+++++.++|+|||.+++.++..+ ...++.+
T Consensus 177 -~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--------------------------~~~~~~~ 224 (277)
T 1o54_A 177 -FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN--------------------------QVQETLK 224 (277)
T ss_dssp -CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHHHH
T ss_pred -ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHHHH
Confidence 56678999997 467888999999999999999999876421 1235666
Q ss_pred HHHHCCCeEEE
Q 018740 323 LCRACGLVDFK 333 (351)
Q Consensus 323 ll~~aGf~~v~ 333 (351)
.+++.||..++
T Consensus 225 ~l~~~gf~~~~ 235 (277)
T 1o54_A 225 KLQELPFIRIE 235 (277)
T ss_dssp HHHHSSEEEEE
T ss_pred HHHHCCCceeE
Confidence 77778887665
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=132.34 Aligned_cols=130 Identities=10% Similarity=-0.087 Sum_probs=103.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---CCceee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDA 251 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~---~~~fD~ 251 (351)
..++.+|||||||+|..+..++...+..+|+++|+|+.+++.+++++... | ..++.++++|+++++.. +++||+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--l~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL-G--LKGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-T--CSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-C--CCceEEEECcHHHhhcccccCCCceE
Confidence 34578999999999999999999877789999999999999999998876 2 35799999999887643 478999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
|++.. +.+...+++.+.++|+|||++++...... .. ...++...++..||.+
T Consensus 155 I~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------~~----------------e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 155 AVARA----VAPLCVLSELLLPFLEVGGAAVAMKGPRV--------EE----------------ELAPLPPALERLGGRL 206 (249)
T ss_dssp EEEES----SCCHHHHHHHHGGGEEEEEEEEEEECSCC--------HH----------------HHTTHHHHHHHHTEEE
T ss_pred EEECC----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc--------HH----------------HHHHHHHHHHHcCCeE
Confidence 99864 35778999999999999999987542110 00 1235667788889988
Q ss_pred EEEE
Q 018740 332 FKCT 335 (351)
Q Consensus 332 v~~~ 335 (351)
.+..
T Consensus 207 ~~~~ 210 (249)
T 3g89_A 207 GEVL 210 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7744
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=133.48 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=90.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C--CCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p--~~~~~fD~V~ 253 (351)
++.+|||||||+|.++..+++..+...|+|+|+|+.+++.|++++... +..++.++++|+.++ + +++++||.|+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence 467999999999999999999988889999999999999999998766 246899999998774 3 6789999999
Q ss_pred eccccccCCCh--------HHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~d~--------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++...+.... ..+++++.++|||||.+++.+..
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 87543322211 25899999999999999998754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=127.89 Aligned_cols=111 Identities=16% Similarity=0.274 Sum_probs=90.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~ 253 (351)
.++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|++++... |. ..++.++++|+.+++ +.+++||+|+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-NL-IDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-TC-GGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCCeEEEECCHHHHhhhccCCceEEE
Confidence 45789999999999999999887 34569999999999999999998875 21 258999999998875 5668999999
Q ss_pred eccccc---------cCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 254 AGAAIH---------CWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 254 ~~~vl~---------h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+...+. +..++..+++++.++|+|||.+++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 886551 11134579999999999999999987653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=139.27 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=92.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhC------CC--CCCCeEE
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------NF--PKENFLL 234 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~------g~--~~~~i~~ 234 (351)
.....+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++.... +. ...++.+
T Consensus 92 ~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 92 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 33455666667778899999999999999999987 666799999999999999999887530 00 1268999
Q ss_pred EEecCCCC--CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 235 VRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 235 ~~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+.+|+.+. ++++++||+|++. .+++..+++++.++|+|||.+++..+..
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp EESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred EECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 99999886 4567789999974 4566668999999999999999877653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=142.19 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=99.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh-------hhCCCCCCCeEEEEe
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLVRA 237 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~g~~~~~i~~~~~ 237 (351)
.+..+...+...++.+|||||||+|.++..++...+..+++|+|+|+.+++.|++++. .. |....+++++++
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~-Gl~~~rVefi~G 239 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY-GKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-TBCCCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-CCCCCCeEEEEC
Confidence 3556677777888999999999999999999877544469999999999999987542 22 222368999999
Q ss_pred cCCCCCCCC--CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 238 DISRLPFAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 238 d~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+.++|+.+ ..||+|+++..+ +.++....|.++.++|||||+|++.....
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred cccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 999988754 479999998775 45788899999999999999999976544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=125.10 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=107.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCc
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~ 248 (351)
+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+++++... .++.++.+|+.+.. ...++
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCC
Confidence 33567889999999999999999987 45569999999999999998876543 68999999998732 12458
Q ss_pred eeeEEeccccccCCChH-HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 249 IDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~-~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
||+|++... .++.. .+++++.++|+|||.+++........ ...+. ..+..+++.++ +++
T Consensus 144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~---------------~~~~~~~l~~l-~~~ 203 (227)
T 1g8a_A 144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSID-VTKEP---------------EQVFREVEREL-SEY 203 (227)
T ss_dssp EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-TTSCH---------------HHHHHHHHHHH-HTT
T ss_pred ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCC-CCCCh---------------hhhhHHHHHHH-Hhh
Confidence 999997654 23443 44999999999999999984322111 00110 11235677777 777
Q ss_pred CCeEEEEEecC----eEEEEEEec
Q 018740 328 GLVDFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 328 Gf~~v~~~~~g----~~~~~~a~k 347 (351)
|++++..... .+.+++++|
T Consensus 204 -f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 -FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -SEEEEEEECTTTSSSEEEEEEEC
T ss_pred -ceeeeEeccCcccCCCEEEEEEe
Confidence 9998865533 256667765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=125.28 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=114.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
++.+..++.+ +.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++... |. ..++++..+|..+...+
T Consensus 12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~-gl-~~~I~~~~gD~l~~~~~ 87 (230)
T 3lec_A 12 LQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH-GL-TSKIDVRLANGLSAFEE 87 (230)
T ss_dssp HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT-TC-TTTEEEEECSGGGGCCG
T ss_pred HHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECchhhcccc
Confidence 3556666654 67999999999999999999987678999999999999999999887 32 45799999999876654
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
++.||+|+..++.-. -...+|.+..+.|+++|.|++.... ..+.++++|.
T Consensus 88 ~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~----------------------------~~~~lr~~L~ 137 (230)
T 3lec_A 88 ADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNN----------------------------REDDLRKWLA 137 (230)
T ss_dssp GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHHH
T ss_pred ccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCC----------------------------ChHHHHHHHH
Confidence 457999987665331 1346788889999999999885421 3678999999
Q ss_pred HCCCeEEEEE---ec-CeEEEEEEec
Q 018740 326 ACGLVDFKCT---RN-RGFVMFTATK 347 (351)
Q Consensus 326 ~aGf~~v~~~---~~-g~~~~~~a~k 347 (351)
+.||.+++.. .. ..|.++.+.+
T Consensus 138 ~~Gf~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 138 ANDFEIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp HTTEEEEEEEEEEC--CEEEEEEEEE
T ss_pred HCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 9999988843 23 3555555544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=132.64 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC---CCCCCCeEEEEecCCC-CC--CCCCce
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISR-LP--FASSSI 249 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---g~~~~~i~~~~~d~~~-lp--~~~~~f 249 (351)
.++.+|||||||+|.++..+++..+...|+|+|+|+.|++.|++++...+ .....++.++++|+.. ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34568999999999999999999887899999999999999998765310 0124789999999987 66 778999
Q ss_pred eeEEeccccccCCC--------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 250 DAVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 250 D~V~~~~vl~h~~d--------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|.|++...-.|... ...+++++.++|+|||.+++.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99987543222110 137899999999999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=128.74 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=94.9
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... . ++.++.+|+....
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~----~-~v~~~~~d~~~~~ 129 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY----N-NIKLILGDGTLGY 129 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC----S-SEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc----C-CeEEEECCccccc
Confidence 3345666677777788999999999999999999874 9999999999999999987665 2 8999999998733
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..+++||+|++..+++|+. .++.++|+|||++++..+..
T Consensus 130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 3467899999999999986 36889999999999987654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=136.05 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCCCC--CCCceeeE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPF--ASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~lp~--~~~~fD~V 252 (351)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .+...++++++.+|+.+.+. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3467999999999999999998765679999999999999999987421 01125789999999977643 36889999
Q ss_pred EeccccccCCCh----HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCC
Q 018740 253 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 328 (351)
Q Consensus 253 ~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG 328 (351)
++....++.+.. ..++++++++|+|||++++..... +. .....+++.+.++++|
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~--------------~~~~~~~~~~~l~~~G 231 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------WL--------------DLELIEKMSRFIRETG 231 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------TT--------------CHHHHHHHHHHHHHHT
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------cc--------------chHHHHHHHHHHHhCC
Confidence 997665554433 588999999999999999875431 00 0013467888999999
Q ss_pred CeEEEEEe-------cCeEEEEEEec
Q 018740 329 LVDFKCTR-------NRGFVMFTATK 347 (351)
Q Consensus 329 f~~v~~~~-------~g~~~~~~a~k 347 (351)
|..++... .|.+.++.+.|
T Consensus 232 F~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 232 FASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp CSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred CCcEEEEEeecccccCcceEEEEEeC
Confidence 98877543 35555555655
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=136.48 Aligned_cols=112 Identities=19% Similarity=0.328 Sum_probs=94.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.|++++... +. ..++.++.+|+.++++++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~-~~-~~~i~~~~~d~~~~~~~~ 129 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLN-KL-EDTITLIKGKIEEVHLPV 129 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHT-TC-TTTEEEEESCTTTSCCSC
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHc-CC-CCcEEEEEeeHHHhcCCC
Confidence 455555555668899999999999999999985 35899999997 999999988775 22 368999999999998888
Q ss_pred CceeeEEecc---ccccCCChHHHHHHHHhcccCCcEEE
Q 018740 247 SSIDAVHAGA---AIHCWSSPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 247 ~~fD~V~~~~---vl~h~~d~~~~l~~i~~~LkpgG~li 282 (351)
++||+|++.. .+.|..++..+++++.++|||||.++
T Consensus 130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 8999999876 46666777889999999999999988
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=128.91 Aligned_cols=137 Identities=14% Similarity=0.100 Sum_probs=108.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+. ++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|++++..+ +. ..+++++++|+.+++. +
T Consensus 117 ~~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n-~~-~~~v~~~~~D~~~~~~-~ 190 (278)
T 2frn_A 117 VRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN-KV-EDRMSAYNMDNRDFPG-E 190 (278)
T ss_dssp HHHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT-TC-TTTEEEECSCTTTCCC-C
T ss_pred HHHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc-CC-CceEEEEECCHHHhcc-c
Confidence 44455543 4789999999999999999999863 6999999999999999998876 22 3459999999999875 7
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
++||+|++... .+...++.++.++|+|||++++.+...... ...-..+.+.+.+++
T Consensus 191 ~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------------------~~~~~~~~i~~~~~~ 246 (278)
T 2frn_A 191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL--------------------MPREPFETFKRITKE 246 (278)
T ss_dssp SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG--------------------TTTTTHHHHHHHHHH
T ss_pred CCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeecccc--------------------ccccHHHHHHHHHHH
Confidence 88999998533 455688999999999999999988764211 111245678899999
Q ss_pred CCCeEEE
Q 018740 327 CGLVDFK 333 (351)
Q Consensus 327 aGf~~v~ 333 (351)
+||....
T Consensus 247 ~G~~~~~ 253 (278)
T 2frn_A 247 YGYDVEK 253 (278)
T ss_dssp TTCEEEE
T ss_pred cCCeeEE
Confidence 9997654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=138.57 Aligned_cols=116 Identities=19% Similarity=0.248 Sum_probs=97.8
Q ss_pred HHHHHhccC--CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+...+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... ..+++++.+|+.+.+
T Consensus 220 l~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~----~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEAN----ALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTS
T ss_pred HHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc----CCCeEEEEcchhhcc
Confidence 344444432 33577999999999999999999865 9999999999999999998877 446899999999987
Q ss_pred CCCCceeeEEecccccc-----CCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h-----~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.++++||+|+++..+|+ ..+...+++++.++|+|||.++++...
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 76789999999999988 345678999999999999999997654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.42 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=96.7
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
..+.+...+...++.+|||||||+|.++..+++.++ ..+|+|+|+|+.+++.|++++... | ..++.+..+|+.+.+
T Consensus 63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-g--~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL-G--IENVIFVCGDGYYGV 139 (317)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEESCGGGCC
T ss_pred HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCCeEEEECChhhcc
Confidence 345666777777889999999999999999998876 356999999999999999998776 2 356999999998865
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+++||+|++..+++|+. +++.++|||||++++....
T Consensus 140 ~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 140 PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 5567899999999999986 5788999999999997654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=125.63 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=93.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+...+...++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+++++... + ..++.+..+|+.....
T Consensus 66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL-G--YDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-T--CTTEEEEESCGGGCCG
T ss_pred HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCeEEEECCcccCCC
Confidence 4456666677778899999999999999999886 4469999999999999999988765 2 3579999999854322
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+++||+|++..+++|++ +++.++|+|||.+++..+.
T Consensus 143 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 367899999999999986 4889999999999998764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=129.66 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=88.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--CCCc-eeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--ASSS-IDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--~~~~-fD~V~ 253 (351)
++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++... +....+++++++|+.++.. .+++ ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHh-CCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 467999999999999998777763 58999999999999999998876 2111589999999876532 3578 99999
Q ss_pred eccccccCCChHHHHHHH--HhcccCCcEEEEEeecc
Q 018740 254 AGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i--~~~LkpgG~li~~~~~~ 288 (351)
+...++ ..+...+++++ .++|+|||.+++.....
T Consensus 131 ~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 131 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 988754 56777889999 67899999999977653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=129.42 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=99.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++....|....++.++.+|+.+
T Consensus 85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 334556677777778889999999999999999985 5566999999999999999998764300013689999999998
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.++++++||+|++ +++++..+++++.++|+|||.+++.++.
T Consensus 165 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 165 SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred cCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 8877889999997 5678889999999999999999998775
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=132.55 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=98.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-CCCeEEEEecCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~-~~~i~~~~~d~~~l 242 (351)
...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++... +.. ..+++++.+|+.+
T Consensus 209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n-gl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS- 286 (375)
T ss_dssp HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGGGEEEEECSTTT-
T ss_pred HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc-CCCcCceEEEEechhhc-
Confidence 3345677778777778999999999999999999987789999999999999999998876 211 1368999999987
Q ss_pred CCCCCceeeEEeccccccCC---Ch--HHHHHHHHhcccCCcEEEEEeec
Q 018740 243 PFASSSIDAVHAGAAIHCWS---SP--STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~---d~--~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++++++||+|+++..+|+.. +. ..+++++.++|+|||.++++...
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 45678999999998887642 22 36899999999999999997654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=125.63 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C--CCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F--ASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~--~~~~fD~V 252 (351)
++.+|||+|||+|.++..+++.++ .|+|+|+|+.+++.+++++... ..+++++++|+.+. + . ..++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT----GLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH----TCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHc----CCceEEEeccHHHHHHhhhccCCceEEE
Confidence 567999999999999999999987 6999999999999999998876 22899999998763 2 1 13479999
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEeeccCC
Q 018740 253 HAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVDG 290 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~--~~LkpgG~li~~~~~~~~ 290 (351)
++...++ .+....++.+. ++|+|||++++.++..+.
T Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 115 FMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp EECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred EECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 9988765 55666777777 999999999998887543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=136.20 Aligned_cols=107 Identities=14% Similarity=0.266 Sum_probs=90.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++... +. ..++.++.+|+.++++++++||+|++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKAN-KL-DHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHT-TC-TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHc-CC-CCcEEEEECcHHHccCCCCceEEEEE
Confidence 3457899999999999999999984 45999999995 999999988776 22 34599999999999988899999999
Q ss_pred ccc---cccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 255 GAA---IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 255 ~~v---l~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+ +++..++..+++++.++|||||+++...
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 765 4444788899999999999999987533
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=129.36 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=97.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCC---CCcee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFA---SSSID 250 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~---~~~fD 250 (351)
++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++... +. ..++.++++|+.+. +++ +++||
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NL-SDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc-CC-CccEEEEEcchhhhhhhhhhcccCCccc
Confidence 467999999999999998888754569999999999999999998776 22 23599999997652 344 26899
Q ss_pred eEEeccccccCC--------------Ch-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh----ccCC
Q 018740 251 AVHAGAAIHCWS--------------SP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGS 311 (351)
Q Consensus 251 ~V~~~~vl~h~~--------------d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 311 (351)
+|+++-.+++.. .+ ..++.+++++|||||.+.+.... .......... ....
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~----------~~~~~~~l~~~g~~~~~~ 212 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI----------IHDSLQLKKRLRWYSCML 212 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHH----------HHHHHHHGGGBSCEEEEE
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH----------HHHHHhcccceEEEEECC
Confidence 999985554432 11 24578899999999987664321 1111111111 0111
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEE
Q 018740 312 YTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 312 ~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
....+.+++.++++++||..++.
T Consensus 213 ~~~~~~~~~~~~l~~~Gf~~v~~ 235 (254)
T 2h00_A 213 GKKCSLAPLKEELRIQGVPKVTY 235 (254)
T ss_dssp SSTTSHHHHHHHHHHTTCSEEEE
T ss_pred CChhHHHHHHHHHHHcCCCceEE
Confidence 12234478999999999988763
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-14 Score=123.55 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=113.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
++.+..++.+ +.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++... |. ..++.+..+|..+...+
T Consensus 12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~-gl-~~~I~v~~gD~l~~~~~ 87 (244)
T 3gnl_A 12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS-GL-TEQIDVRKGNGLAVIEK 87 (244)
T ss_dssp HHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-TC-TTTEEEEECSGGGGCCG
T ss_pred HHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CceEEEEecchhhccCc
Confidence 3566667664 67999999999999999999987678999999999999999999887 32 35699999999776544
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+..||+|+..++.-. -...+|.+..+.|+++|+|++.... ..+.++++|.
T Consensus 88 ~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~----------------------------~~~~lr~~L~ 137 (244)
T 3gnl_A 88 KDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNI----------------------------AAWQLREWSE 137 (244)
T ss_dssp GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHHH
T ss_pred cccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCC----------------------------ChHHHHHHHH
Confidence 446999987655321 1346788999999999999985321 4578999999
Q ss_pred HCCCeEEEE---EecC-eEEEEEEec
Q 018740 326 ACGLVDFKC---TRNR-GFVMFTATK 347 (351)
Q Consensus 326 ~aGf~~v~~---~~~g-~~~~~~a~k 347 (351)
+.||.+++. ...+ .|.++.+.+
T Consensus 138 ~~Gf~i~~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 138 QNNWLITSEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp HHTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 999998772 3444 444555544
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-14 Score=121.25 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=111.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-CCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~lp~~ 245 (351)
+.+..++.+ +.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++..+ |. ..++++..+|.. .++.
T Consensus 7 ~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~-gl-~~~i~~~~~d~l~~l~~- 81 (225)
T 3kr9_A 7 ELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-GL-KEKIQVRLANGLAAFEE- 81 (225)
T ss_dssp HHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-TC-TTTEEEEECSGGGGCCG-
T ss_pred HHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CceEEEEECchhhhccc-
Confidence 456666654 67999999999999999999987778999999999999999999887 32 347999999985 3442
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
...||+|+..++--. -...+|.+..+.|+|+|++++... -..+.++++|.
T Consensus 82 ~~~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~----------------------------~~~~~vr~~L~ 131 (225)
T 3kr9_A 82 TDQVSVITIAGMGGR--LIARILEEGLGKLANVERLILQPN----------------------------NREDDLRIWLQ 131 (225)
T ss_dssp GGCCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEES----------------------------SCHHHHHHHHH
T ss_pred CcCCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEECC----------------------------CCHHHHHHHHH
Confidence 226999987665321 135779999999999999988422 14578999999
Q ss_pred HCCCeEEEE---EecCe-EEEEEEec
Q 018740 326 ACGLVDFKC---TRNRG-FVMFTATK 347 (351)
Q Consensus 326 ~aGf~~v~~---~~~g~-~~~~~a~k 347 (351)
+.||.+++. ...+. |.++.+.+
T Consensus 132 ~~Gf~i~~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 132 DHGFQIVAESILEEAGKFYEILVVEA 157 (225)
T ss_dssp HTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 999998884 34554 44544443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=132.02 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=94.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
..+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++... | ..++.++++|+..++..
T Consensus 108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~-g--~~~v~~~~~D~~~~~~~ 184 (315)
T 1ixk_A 108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL-G--VLNVILFHSSSLHIGEL 184 (315)
T ss_dssp HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-T--CCSEEEESSCGGGGGGG
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh-C--CCeEEEEECChhhcccc
Confidence 3445566777889999999999999999998743 469999999999999999998876 2 35899999999887655
Q ss_pred CCceeeEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++||+|++. +++++.++. ..+|+++.++|||||++++++..
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 6789999983 344443321 48899999999999999998754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=137.76 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=98.7
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++... ...+.++.+|+...+
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~d~~~~~- 258 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----GVEGEVFASNVFSEV- 258 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTC-
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCEEEEccccccc-
Confidence 345666777555677999999999999999999987779999999999999999998876 345778889987654
Q ss_pred CCCceeeEEecccccc-----CCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h-----~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++||+|+++..+|+ ..+...+++++.++|+|||.+++....
T Consensus 259 -~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 -KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp -CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred -cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 678999999999885 335678999999999999999998764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-15 Score=126.01 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=89.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~ 255 (351)
++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++... + ..+++++++|+.+ ++..+++||+|++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~-~--~~~v~~~~~D~~~~~~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL-K--AGNARVVNSNAMSFLAQKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-T--CCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence 467999999999999998777763 48999999999999999998876 2 2689999999876 45566789999998
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEeecc
Q 018740 256 AAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~~ 288 (351)
..+ |..+...+++++.+ +|+|||++++.....
T Consensus 130 ~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 130 PPF-RRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 774 45677788888866 599999999887653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=127.97 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=105.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHh-----hhCCCC---CCCeEEE
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQ-----QESNFP---KENFLLV 235 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~-----~~~g~~---~~~i~~~ 235 (351)
+.+.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+ |+.+++.+++++. .. +.. ..++.+.
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~-~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSC-SSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEE
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhc-ccccCCCCCeEEE
Confidence 34555555544567899999999999999998876 358999999 8999999999883 32 110 0368888
Q ss_pred EecCCCCC--C----CCCceeeEEeccccccCCChHHHHHHHHhccc---C--CcEEEEEeeccCCCCCcchHHHHHHHH
Q 018740 236 RADISRLP--F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR---P--GGVFVGTTYIVDGPFNLIPFSRLLRQN 304 (351)
Q Consensus 236 ~~d~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lk---p--gG~li~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
..+..+.. + .+++||+|++..+++|.++...+++.+.++|+ | ||.+++...... +..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~------~~~------ 212 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR------PHL------ 212 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------------
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee------ccc------
Confidence 76654421 1 35789999999999999999999999999999 9 998877432211 000
Q ss_pred HhhccCCccCCCHHHHHHHHHHCC-CeEEEE
Q 018740 305 MMQISGSYTFLSEREIEDLCRACG-LVDFKC 334 (351)
Q Consensus 305 ~~~~~~~~~~~s~~~l~~ll~~aG-f~~v~~ 334 (351)
......+.+.+++.| |.+.+.
T Consensus 213 ---------~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 213 ---------AERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp ------------CTHHHHHHHHSTTEEEEEE
T ss_pred ---------chhHHHHHHHHHhcCCEEEEEe
Confidence 001245667888889 887765
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=124.28 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=92.7
Q ss_pred HHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CC
Q 018740 166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP 243 (351)
Q Consensus 166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp 243 (351)
.+.+...+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... +. ..++.++.+|+.+ ++
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~~ 95 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMT-KA-ENRFTLLKMEAERAID 95 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTT-TC-GGGEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECcHHHhHH
Confidence 344455554 4467899999999999999999884 459999999999999999998765 21 2479999999877 34
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHH--hcccCCcEEEEEeeccC
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~--~~LkpgG~li~~~~~~~ 289 (351)
..+++||+|++...+++ .+....++.+. ++|+|||++++.+....
T Consensus 96 ~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 96 CLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 44567999999866532 34456677776 99999999999887643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=121.70 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=96.0
Q ss_pred HHHHHHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+...+.+...+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... +. ..+++++.+|+.+
T Consensus 29 ~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 29 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAIT-KE-PEKFEVRKMDANR 105 (187)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEESCHHH
T ss_pred HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh-CC-CcceEEEECcHHH
Confidence 444455555553 3467899999999999999888864 359999999999999999998776 11 2579999999876
Q ss_pred CC----CCCCceeeEEeccccccCCChHHHHHHH--HhcccCCcEEEEEeeccC
Q 018740 242 LP----FASSSIDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 242 lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~i--~~~LkpgG~li~~~~~~~ 289 (351)
.. ..+++||+|++...++ ..+....++.+ .++|+|||++++..+...
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 32 2367899999987744 45677778888 899999999999877643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-14 Score=116.95 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~ 245 (351)
..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++ ..++.++.+|+.+.+ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence 456789999999999999999988 5557999999999 642 357899999998876 67
Q ss_pred CCceeeEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++||+|++...+++..++ ..+++++.++|+|||.+++.++..
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 7899999999999988776 688999999999999999987753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-14 Score=123.07 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=94.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
...+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++... +. ..++.++.+|+.+. +
T Consensus 60 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~ 137 (232)
T 3ntv_A 60 LDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY-HF-ENQVRIIEGNALEQFEN 137 (232)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT-TC-TTTEEEEESCGGGCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECCHHHHHHh
Confidence 34444444444578999999999999999999766779999999999999999998876 22 35899999999764 3
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..+++||+|++... ..+...+++++.++|+|||++++.....
T Consensus 138 ~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 138 VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 33688999997643 4466789999999999999998855443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=134.97 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=95.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+...+...++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|++++... +. ..++.++.+|+.+++++
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~- 127 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKAN-NL-DHIVEVIEGSVEDISLP- 127 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHT-TC-TTTEEEEESCGGGCCCS-
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHc-CC-CCeEEEEECchhhcCcC-
Confidence 4555555666788999999999999999999863 599999999 9999999988776 22 35699999999998876
Q ss_pred CceeeEEeccccccC---CChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~---~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++||+|++..+.+++ .++..+++++.++|+|||++++...
T Consensus 128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 889999996655544 5678899999999999999987544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=124.29 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=89.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCC--CCce
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA--SSSI 249 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~--~~~f 249 (351)
...++.+|||||||+|..+..+++..+ ..+|+++|+|+.+++.|++++... |. ..++.++.+|+.+ ++.. .++|
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-g~-~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-GV-DQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-TC-TTTEEEEESCHHHHHHTCCSCCCC
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHhcCCCCCe
Confidence 344577999999999999999999865 679999999999999999998876 22 3589999999866 3322 3489
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+|++... ..+...+++++.++|+|||++++.....
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 138 DLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 99998653 3456788999999999999999876543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=126.06 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=86.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC--C---CCCCCeEEEEecCCC-CC--CCCCc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--N---FPKENFLLVRADISR-LP--FASSS 248 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--g---~~~~~i~~~~~d~~~-lp--~~~~~ 248 (351)
++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+++++.... . .+..++.++.+|+.+ ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4679999999999999999999887799999999999999998876531 0 013689999999987 66 66789
Q ss_pred eeeEEeccccccCCCh-------------HHHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~-------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|.|+.. +++| ..+++++.++|+|||.+++.+.
T Consensus 129 ~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9999843 4555 4899999999999999999654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=130.28 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=84.1
Q ss_pred CCCeEEEEcCccCH----HHHHHHHh-CC---CCeEEEEeCCHHHHHHHHHHHhhh---CC-----------------CC
Q 018740 177 LGGNIIDASCGSGL----FSRIFAKS-GL---FSLVVALDYSENMLKQCYEFVQQE---SN-----------------FP 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~-~~---~~~v~gvD~s~~~~~~a~~~~~~~---~g-----------------~~ 228 (351)
++.+|||+|||+|. ++..+++. +. ..+|+|+|+|+.|++.|++.+-.. ++ .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999998 45555555 21 248999999999999999864100 00 00
Q ss_pred --------CCCeEEEEecCCCCCCC-CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEE
Q 018740 229 --------KENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 229 --------~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~ 283 (351)
..++.|.+.|+.+.|++ .++||+|+|.++++|+.++ .++++++++.|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 03699999999887665 5789999999999999766 6999999999999999998
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=125.21 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=93.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+...+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++... + ..++.+..+|+ ..++
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~--~~~v~~~~~d~-~~~~ 153 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA-G--VKNVHVILGDG-SKGF 153 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEESCG-GGCC
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc-C--CCCcEEEECCc-ccCC
Confidence 345566666777788999999999999999999874 59999999999999999988765 2 35799999997 3344
Q ss_pred CC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 AS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ..||+|++..++++++ .++.++|+|||++++..+..
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 44 3599999999999885 37889999999999988764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=128.20 Aligned_cols=117 Identities=9% Similarity=0.153 Sum_probs=91.8
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~ 245 (351)
.+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++... +. ..+++++.+|+.+ ++..
T Consensus 49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~l~~~ 126 (221)
T 3u81_A 49 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-GL-QDKVTILNGASQDLIPQL 126 (221)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEESCHHHHGGGT
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-CC-CCceEEEECCHHHHHHHH
Confidence 33333333456799999999999999999863 3569999999999999999998876 22 3469999999854 3322
Q ss_pred C-----CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 246 S-----SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~-----~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
. ++||+|++....++..+...+++.+ ++|+|||++++.+..
T Consensus 127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 2 6899999998888876666778888 999999999985544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-16 Score=136.94 Aligned_cols=138 Identities=15% Similarity=0.128 Sum_probs=108.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++... +. ..++.++++|+.+++ ++++||+|++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~-~~~~~D~v~~~~ 152 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVY-GI-ADKIEFICGDFLLLA-SFLKADVVFLSP 152 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHG-GGCCCSEEEECC
T ss_pred CCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-CC-CcCeEEEECChHHhc-ccCCCCEEEECC
Confidence 578999999999999999999874 9999999999999999998876 11 158999999998876 567999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh-ccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ-ISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
.++|..++...+.++.++|+|||.+++..... .... ........+.+++..++...|...+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~---------------~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 153 PWGGPDYATAETFDIRTMMSPDGFEIFRLSKK---------------ITNNIVYFLPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp CCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHH---------------HCSCEEEEEETTBCHHHHHHTTCTTCCEEEEE
T ss_pred CcCCcchhhhHHHHHHhhcCCcceeHHHHHHh---------------hCCceEEECCCCCCHHHHHHHhccCCCEEEEe
Confidence 99998888778889999999999866532211 0000 000123457788888888888766663
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=130.87 Aligned_cols=105 Identities=21% Similarity=0.345 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++... +. ..++.++.+|+.++++++++||+|++
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~-~~-~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELN-GF-SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHT-TC-TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHc-CC-CCCEEEEECchhhccCCCCcccEEEE
Confidence 3457799999999999999999885 3589999999 5999999988775 22 35799999999999888789999998
Q ss_pred ccc---cccCCChHHHHHHHHhcccCCcEEEE
Q 018740 255 GAA---IHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 255 ~~v---l~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
..+ +.+..++..++.++.++|+|||.++.
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 754 45556788999999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=134.84 Aligned_cols=122 Identities=9% Similarity=-0.021 Sum_probs=95.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHhhhCCCCCCCeEEEE
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLVR 236 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~g~~~~~i~~~~ 236 (351)
.....+...+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| ++++... |....+++++.
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~-Gl~~~nV~~i~ 307 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY-GMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT-TBCCCCEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc-CCCCCceEEEE
Confidence 345566667777788999999999999999999875445899999999999988 7777665 22136899998
Q ss_pred ecCCCC--CC--CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 237 ADISRL--PF--ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 237 ~d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+|.... ++ ..++||+|+++.++ +.+++...|+++.++|||||.+++..+.
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 865432 22 24689999998776 4467788899999999999999997544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=131.74 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=95.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++.. |. ..+++++.+|+.+++++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~-~l-~~~v~~~~~d~~~~~~~ 114 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN-NL-TDRIVVIPGKVEEVSLP 114 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHT-TC-TTTEEEEESCTTTCCCS
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHc-CC-CCcEEEEEcchhhCCCC
Confidence 3455566665678899999999999999999875 45999999996 889999888765 21 36899999999998765
Q ss_pred CCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++||+|++..+++|+.+ ....+.++.++|||||.+++....
T Consensus 115 -~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 115 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp -SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred -CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 67999999999888854 457888999999999999865443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=125.80 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=93.5
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---hCCCCCCCeEEEEecCCCC--
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL-- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~g~~~~~i~~~~~d~~~l-- 242 (351)
.+..++...++.+|||+|||+|.++..++++.+..+|+|+|+++.+++.|++++.. . +. ..++.++++|+.++
T Consensus 27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~l-~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA-AF-SARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT-TT-GGGEEEEECCTTCCHH
T ss_pred HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC-CC-cceEEEEeCCHHHHhh
Confidence 45556666677899999999999999999998777999999999999999998776 4 11 23699999999887
Q ss_pred -----CCCCCceeeEEecccccc------------------CCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -----PFASSSIDAVHAGAAIHC------------------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -----p~~~~~fD~V~~~~vl~h------------------~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
++++++||+|+++-.+.. ..+...+++.+.++|+|||.+++..+
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 256789999999732221 12467889999999999999998644
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-15 Score=131.56 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCCCCCCceeeEEe
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp~~~~~fD~V~~ 254 (351)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++..........++.+.. .|+.. ..||.+.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~~ 109 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTSI 109 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEEE
Confidence 3467999999999999999999863 49999999999999987742211000001121111 12221 12344444
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--c--cCCccCCCHHHHHHHHHHCCCe
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--I--SGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
..++.++ ..++++++++|||||.+++... +.....+..... . ..+.+..+.+++.++++++||+
T Consensus 110 D~v~~~l---~~~l~~i~rvLkpgG~lv~~~~---------p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~ 177 (232)
T 3opn_A 110 DVSFISL---DLILPPLYEILEKNGEVAALIK---------PQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFS 177 (232)
T ss_dssp CCSSSCG---GGTHHHHHHHSCTTCEEEEEEC---------HHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEE
T ss_pred EEEhhhH---HHHHHHHHHhccCCCEEEEEEC---------cccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCE
Confidence 4443333 6789999999999999998541 111111111100 0 0112234788999999999999
Q ss_pred EEEEE
Q 018740 331 DFKCT 335 (351)
Q Consensus 331 ~v~~~ 335 (351)
++...
T Consensus 178 v~~~~ 182 (232)
T 3opn_A 178 VKGLT 182 (232)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=129.92 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE-EecCCCCC---CCCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP---FASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~-~~d~~~lp---~~~~~fD~ 251 (351)
.++.+|||||||||.++..+++.+ ..+|+|+|+|+.|++.+.+. .+++... ..++..++ ++..+||+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCE
Confidence 356799999999999999998885 35899999999999986542 2444332 23443333 23456999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEe-eccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCe
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT-YIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
|++..+++++ ..+|.++.++|+|||.+++.. |..+.. ...... ..... ....+....+++.++++++||.
T Consensus 155 v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~---~~~~~~--~G~vr-d~~~~~~~~~~v~~~~~~~Gf~ 225 (291)
T 3hp7_A 155 ASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAG---REQIGK--NGIVR-ESSIHEKVLETVTAFAVDYGFS 225 (291)
T ss_dssp EEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSC---GGGCC---CCCCC-CHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccC---hhhcCC--CCccC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 9998887754 778999999999999998863 111100 000000 00000 0012234678899999999999
Q ss_pred EEEEEe
Q 018740 331 DFKCTR 336 (351)
Q Consensus 331 ~v~~~~ 336 (351)
+.....
T Consensus 226 v~~~~~ 231 (291)
T 3hp7_A 226 VKGLDF 231 (291)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=129.20 Aligned_cols=123 Identities=20% Similarity=0.091 Sum_probs=100.8
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
.+.+...+.......++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.|++++... |. .++.+.++|+.
T Consensus 188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~-g~--~~i~~~~~D~~ 264 (354)
T 3tma_A 188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS-GL--SWIRFLRADAR 264 (354)
T ss_dssp CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-TC--TTCEEEECCGG
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-CC--CceEEEeCChh
Confidence 35556667777777778899999999999999999976 5679999999999999999998887 32 38999999999
Q ss_pred CCCCCCCceeeEEeccccccCC--------ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 241 RLPFASSSIDAVHAGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~--------d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++.+.+.||+|+++-...... ....+++++.++|+|||.+++.++.
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9887778899999965443211 1257899999999999999997663
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=121.18 Aligned_cols=106 Identities=23% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCC---CCCCeEEEEecCCCCCCCCCcee
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~---~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+++++... +. ...++.++.+|+...+..+++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-cccccCCCcEEEEECCcccCcccCCCcC
Confidence 456789999999999999999887 44469999999999999999988764 10 02589999999987665567899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+|++...++++ ++++.++|||||++++....
T Consensus 154 ~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 99999998887 46889999999999998764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=122.83 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (351)
+..+....+..++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++... |....+++++.+|+.+. +
T Consensus 45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~~i~~~~gda~~~l~ 123 (221)
T 3dr5_A 45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA-GYSPSRVRFLLSRPLDVMS 123 (221)
T ss_dssp HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT-TCCGGGEEEECSCHHHHGG
T ss_pred HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCcCcEEEEEcCHHHHHH
Confidence 3444444444445599999999999999999874 3679999999999999999999876 33115899999998664 2
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++++||+|++... ..+...+++++.++|+|||++++....
T Consensus 124 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 124 RLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp GSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 33689999998654 245667899999999999999985443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=121.27 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHhhhCCC---CCCCeEEEEecCCCCC---
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISRLP--- 243 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~g~---~~~~i~~~~~d~~~lp--- 243 (351)
..++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++... +. ...++.++.+|+....
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-CccccccCCEEEEECChHhccccc
Confidence 4567899999999999999999875 4569999999999999999998776 10 0358999999998754
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...++||+|++...++|+ ++++.++|+|||++++..+.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 456789999999999886 47889999999999998764
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=122.37 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=96.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l- 242 (351)
.....+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++... |. ..++.++.+|+...
T Consensus 41 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~ 118 (233)
T 2gpy_A 41 LGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL-GL-ESRIELLFGDALQLG 118 (233)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT-TC-TTTEEEECSCGGGSH
T ss_pred HHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECCHHHHH
Confidence 3344455555555678999999999999999999876679999999999999999998775 21 25799999999774
Q ss_pred CCC--CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 243 PFA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 243 p~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.. +++||+|++....+ +...+++++.++|+|||++++.+..
T Consensus 119 ~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 119 EKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp HHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred HhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 432 57899999977753 7789999999999999999997544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=119.60 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=95.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
....+...+...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|++++... +. ..++.+..+|+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 79 DSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKF-NL-GKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHT-TC-CTTEEEECSCTTTSCC
T ss_pred hHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHc-CC-CCcEEEEEcChhhccc
Confidence 34466677777778899999999999999999884 49999999999999999988765 21 2689999999987543
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++++||+|++ +.+++..+++++.++|+|||.+++..+.
T Consensus 155 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 155 PEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp CTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred CCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5678999997 4668889999999999999999998775
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=142.39 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=91.0
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~ 255 (351)
+.+|||||||.|.++..+++.|. +|+|+|+|+.+++.|+.++.+. +..++++.+++++++ ++.+++||+|+|+
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEEN---PDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTS---TTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhc---CCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 57999999999999999999987 9999999999999999988765 135899999999887 4567899999999
Q ss_pred cccccCCChH--HHHHHHHhcccCCcEEEEEeecc
Q 018740 256 AAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+|||++|+. ..+..+.+.|+++|..++.....
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred cchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 9999999886 33567788899988877766543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=128.21 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=90.7
Q ss_pred HHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+...+. ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++... +....++.++++|+.++...
T Consensus 142 ~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~~ 218 (332)
T 2igt_A 142 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQR 218 (332)
T ss_dssp HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHHH
Confidence 34444443 33467999999999999999999876 9999999999999999998876 32122599999998765321
Q ss_pred ----CCceeeEEecc----------ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 246 ----SSSIDAVHAGA----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ----~~~fD~V~~~~----------vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.++||+|++.- ++++..+...+++++.++|+|||++++....
T Consensus 219 ~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 219 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 56899999842 2233445678999999999999998877654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=122.35 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|++++..+ + ..++.++.+|+.+.+. .++||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n-~--l~~~~~~~~d~~~~~~-~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN-K--LNNVIPILADNRDVEL-KDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT-T--CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCCEEEEECChHHcCc-cCCceEEEE
Confidence 44578999999999999999999866679999999999999999998876 2 3679999999988743 678999998
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.... +...++.++.+.|+|||++++++...
T Consensus 193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 7653 66788999999999999999988764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=123.12 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=106.5
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.......+.... ..++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.|++++... |. ..++.+.++|+.+
T Consensus 203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-gl-~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-GV-LDKIKFIQGDATQ 279 (373)
T ss_dssp CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT-TC-GGGCEEEECCGGG
T ss_pred cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-CC-CCceEEEECChhh
Confidence 344555555555 66788999999999999999999886668999999999999999998876 21 2589999999999
Q ss_pred CCCCCCceeeEEeccccccC-------CCh-HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 242 LPFASSSIDAVHAGAAIHCW-------SSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~-------~d~-~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
+++++++||+|+++-.+..- .+. ..+++++.++| +|.+++.+.
T Consensus 280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------- 330 (373)
T 3tm4_A 280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------- 330 (373)
T ss_dssp GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------
T ss_pred CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------
Confidence 99888899999997553321 111 56788899988 555554332
Q ss_pred CCCHHHHHHHHHHCCCeEEE
Q 018740 314 FLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~ 333 (351)
+.+.+.+.+++.||+..+
T Consensus 331 --~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 331 --EKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp --CHHHHHHHHHHTTEEEEE
T ss_pred --CHHHHHHHHHHcCCEEEE
Confidence 345777889999998877
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.1e-14 Score=123.63 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=91.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~ 245 (351)
.+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..+++++.+|+.+. +..
T Consensus 51 ~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~-~~~i~~~~gda~~~l~~~ 128 (242)
T 3r3h_A 51 FMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-KQ-EHKIKLRLGPALDTLHSL 128 (242)
T ss_dssp HHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-TC-TTTEEEEESCHHHHHHHH
T ss_pred HHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHHH
Confidence 333333334467999999999999999998754 679999999999999999998876 22 35899999998664 211
Q ss_pred -----CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 -----SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 -----~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+++||+|++... ..+...+++++.++|+|||++++......
T Consensus 129 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 129 LNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred hhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 478999998654 23566889999999999999999766543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=122.26 Aligned_cols=120 Identities=18% Similarity=0.122 Sum_probs=88.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCC----------
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES--NFPKEN---------- 231 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~---------- 231 (351)
.+.+...+...++.+|||+|||+|.++..+++. .+..+|+|+|+|+.+++.|++++.... +. ..+
T Consensus 40 ~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 118 (250)
T 1o9g_A 40 FQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-TARELERREQSER 118 (250)
T ss_dssp HHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-cccchhhhhhhhh
Confidence 344444444445679999999999999999887 444589999999999999998765320 00 001
Q ss_pred ---------------eE-------------EEEecCCCCCC-----CCCceeeEEeccccccCCC---------hHHHHH
Q 018740 232 ---------------FL-------------LVRADISRLPF-----ASSSIDAVHAGAAIHCWSS---------PSTGVA 269 (351)
Q Consensus 232 ---------------i~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~ 269 (351)
+. +.++|+.+... ..++||+|+++..+.+..+ ...+++
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~ 198 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 198 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence 55 99999877431 3458999999876655443 348899
Q ss_pred HHHhcccCCcEEEEEee
Q 018740 270 EISRVLRPGGVFVGTTY 286 (351)
Q Consensus 270 ~i~~~LkpgG~li~~~~ 286 (351)
++.++|+|||++++...
T Consensus 199 ~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 199 SLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHSCTTCEEEEEES
T ss_pred HHHHhcCCCcEEEEeCc
Confidence 99999999999998443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-14 Score=124.36 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=82.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCC-Cc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS-SS 248 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~-~~ 248 (351)
++.+|||||||+|..+..+++. ++..+|+|+|+|+.+++.|+. . ..+++++++|+.+. +... .+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~----~~~v~~~~gD~~~~~~l~~~~~~~ 152 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D----MENITLHQGDCSDLTTFEHLREMA 152 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G----CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c----CCceEEEECcchhHHHHHhhccCC
Confidence 4579999999999999999987 566799999999999988872 1 46899999999884 5433 47
Q ss_pred eeeEEeccccccCCChHHHHHHHHh-cccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISR-VLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~-~LkpgG~li~~~~ 286 (351)
||+|++... | .+...++.++.+ +|||||++++.+.
T Consensus 153 fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 153 HPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 999998665 4 377889999997 9999999999654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=115.61 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=90.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F 244 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~ 244 (351)
.+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..++.++.+|+.+. + +
T Consensus 49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 49 FLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-NL-NDRVEVRTGLALDSLQQI 126 (223)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHHH
Confidence 333333444577999999999999999999865 569999999999999999998776 22 34699999998653 1 1
Q ss_pred C---CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 A---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~---~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
. .++||+|++.... .+...+++++.++|+|||++++.....
T Consensus 127 ~~~~~~~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 127 ENEKYEPFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HHTTCCCCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred HhcCCCCcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 1 2679999987653 345688999999999999999876543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-13 Score=121.70 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=89.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+...+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++... |. ..++.++++|+.+.
T Consensus 110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~-~l-~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH-GV-SDRFFVRKGEFLEP- 185 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT-TC-TTSEEEEESSTTGG-
T ss_pred HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECcchhh-
Confidence 34455555544334679999999999999999998 6779999999999999999998876 22 23599999999773
Q ss_pred CCCCce---eeEEec------------cccccCC--------ChHHHHHHHH-hcccCCcEEEEEe
Q 018740 244 FASSSI---DAVHAG------------AAIHCWS--------SPSTGVAEIS-RVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~f---D~V~~~------------~vl~h~~--------d~~~~l~~i~-~~LkpgG~li~~~ 285 (351)
++ ++| |+|+++ .+. |-+ |...+++++. +.|+|||++++..
T Consensus 186 ~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 186 FK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp GG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 22 478 999997 222 322 2237899999 9999999999854
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=119.60 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=88.9
Q ss_pred HHHhcc--CCCCCCeEEEEcCccCHHHHHHHHhCC------CCeEEEEeCCHHHHHHHHHHHhhhCC---CCCCCeEEEE
Q 018740 168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVR 236 (351)
Q Consensus 168 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~g---~~~~~i~~~~ 236 (351)
.+.+.+ ...++.+|||||||+|.++..+++... ..+|+++|+++.+++.+++++... + ....++.++.
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD-DRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH-HHHHHHHTSEEEEE
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc-CccccCCCceEEEE
Confidence 344444 345678999999999999999988532 248999999999999999987764 1 0025899999
Q ss_pred ecCCCCCCCC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 237 ADISRLPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 237 ~d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+|+.. ++++ ++||+|++..+++|+. +++.++|||||++++....
T Consensus 152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 GDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 99977 3444 7899999999999875 7889999999999998754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-13 Score=127.54 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=97.7
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
..+...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++++... | ..++.++++|+..++
T Consensus 249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~-g--~~~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM-G--IKIVKPLVKDARKAPEI 325 (450)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT-T--CCSEEEECSCTTCCSSS
T ss_pred HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-C--CCcEEEEEcChhhcchh
Confidence 34455667778889999999999999999987544 69999999999999999998876 2 358999999998876
Q ss_pred CCCCceeeEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++++||+|++ .+++++.++. ..+|+++.++|||||.+++++...
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 55578999996 3456665553 578999999999999999988654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=119.20 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
++.+|||||||+|..+..+++..+ ..+|+++|+|+.+++.|++++... +. ..+++++.+|+.+. +..++ ||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-GL-IDRVELQVGDPLGIAAGQRD-IDILFM 132 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-SG-GGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CC-CceEEEEEecHHHHhccCCC-CCEEEE
Confidence 467999999999999999998855 579999999999999999988765 21 34699999998653 44456 999998
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
... ..+...+++++.++|+|||++++....
T Consensus 133 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 133 DCD---VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp ETT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred cCC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 743 457789999999999999999986544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=116.51 Aligned_cols=99 Identities=15% Similarity=0.283 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---------
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------- 243 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------- 243 (351)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.. . .+++.++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~----~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P----IPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C----CTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C----CCCceEEEccccchhhhhhccccc
Confidence 34577999999999999999998865 5799999999831 1 357899999998876
Q ss_pred ----------------CCCCceeeEEeccccccCC----ChH-------HHHHHHHhcccCCcEEEEEeec
Q 018740 244 ----------------FASSSIDAVHAGAAIHCWS----SPS-------TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++++||+|++..++++.. +.. .+++++.++|+|||.+++..+.
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5667999999988877642 222 3789999999999999986654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=117.78 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=87.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-CCC----
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS---- 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~~~---- 246 (351)
...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++... |. ..++.++++|+.+. + +..
T Consensus 61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA-GL-SDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CC-CCceEEEeCCHHHHHHHhhhccCC
Confidence 334567999999999999999999854 569999999999999999998776 22 34699999998543 2 111
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++||+|++... ..+...+++++.++|+|||++++.....
T Consensus 139 ~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 139 WQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp TCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 78999996553 2356789999999999999999876553
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=130.88 Aligned_cols=115 Identities=16% Similarity=0.271 Sum_probs=93.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++... |. ..+++++.+|+.+++++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~-gl-~~~v~~~~~d~~~~~~~ 222 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN-NL-TDRIVVIPGKVEEVSLP 222 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHT-TC-TTTEEEEESCTTTCCCS
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHc-CC-CCcEEEEECchhhCccC
Confidence 3445555555567899999999999999998864 46999999998 999999988776 22 36899999999987754
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~ 285 (351)
++||+|++..+++|+.+. ...+.++.++|+|||.+++..
T Consensus 223 -~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 223 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp -SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred -CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 579999998888887654 467888999999999998643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=129.08 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCc------cCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCG------SGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG------~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
....+.+...+.. ++.+||||||| +|..+..+++ .++..+|+|+|+|+.|. .. .++++++
T Consensus 203 ~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~----~~rI~fv 269 (419)
T 3sso_A 203 TPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD----ELRIRTI 269 (419)
T ss_dssp HHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC----BTTEEEE
T ss_pred HHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc----CCCcEEE
Confidence 3444555544443 36799999999 6555555554 45678999999999872 11 4789999
Q ss_pred EecCCCCCCC------CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 236 RADISRLPFA------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 236 ~~d~~~lp~~------~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++|+.++|+. +++||+|++.. .|++.++..+|++++++|||||++++.+...
T Consensus 270 ~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 270 QGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp ECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 9999998876 68999999875 4777788899999999999999999988763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=119.31 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCC-CCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 254 (351)
.+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+...++++++.+|+.. ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 467999999999999999998754569999999999999999987542 01225789999999865 3434678999998
Q ss_pred ccccccCCC----hHHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~d----~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....++.+. ...+++++.++|+|||++++...
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 544322221 25789999999999999998653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=123.84 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=93.3
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--- 244 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--- 244 (351)
+...+...++.+|||+|||+|..+..+++..+. .+|+|+|+|+.+++.+++++... | ..++.++.+|+..++.
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~-g--~~~v~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM-G--VLNTIIINADMRKYKDYLL 151 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEESCHHHHHHHHH
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh-C--CCcEEEEeCChHhcchhhh
Confidence 344556677889999999999999999986443 69999999999999999998876 2 3589999999987654
Q ss_pred -CCCceeeEEec------cccc------------cCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 -ASSSIDAVHAG------AAIH------------CWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 -~~~~fD~V~~~------~vl~------------h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..++||+|++. +++. +......+|+++.++|||||.+++++...
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 26789999986 2222 22455789999999999999999988654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=125.92 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=99.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.....+...+...++.+|||+|||+|..+..+++.++..+|+|+|+++.+++.+++++... ..++.++++|+..++
T Consensus 233 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~----g~~~~~~~~D~~~~~ 308 (429)
T 1sqg_A 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQGDGRYPS 308 (429)
T ss_dssp HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEECCTTCTH
T ss_pred HHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc----CCCeEEEeCchhhch
Confidence 3344555666777889999999999999999999876679999999999999999998876 346889999998876
Q ss_pred --CCCCceeeEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 --FASSSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++++||+|++ .+++++.++. ..+|+++.++|||||++++++...
T Consensus 309 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 309 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 55678999996 2455665553 377999999999999999988653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-12 Score=119.64 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCC-CCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~-~~~~fD~V~ 253 (351)
.++.+|||+| |+|.++..++..++..+|+|+|+|+.+++.|++++... |. .+++++.+|+.+ +|. .+++||+|+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-g~--~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-GY--EDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH-TC--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC--CCEEEEEChhhhhchhhccCCccEEE
Confidence 3578999999 99999999999876679999999999999999998877 32 389999999988 664 356899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEE-EEEee
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVF-VGTTY 286 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~l-i~~~~ 286 (351)
++..+++. ....+++++.++|+|||.+ ++...
T Consensus 247 ~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 247 TDPPETLE-AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp ECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred ECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 98665433 2478899999999999944 55443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=121.12 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCC-CCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 254 (351)
.+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .+...++++++.+|+.+ ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 357999999999999999998755679999999999999999987541 01124789999999865 3444678999998
Q ss_pred ccccccCC-----ChHHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~-----d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...-.++. ....+++++.++|+|||++++...
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 53311121 226889999999999999999643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-12 Score=108.32 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++... ..++.++++|+.+++ ++||+|+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~---~~~D~v~ 117 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVFIGDVSEFN---SRVDIVI 117 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEEESCGGGCC---CCCSEEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHc----CCCEEEEECchHHcC---CCCCEEE
Confidence 345678999999999999999998863 47999999999999999998776 238999999998875 4899999
Q ss_pred eccccccCC--ChHHHHHHHHhcccCCcEEE
Q 018740 254 AGAAIHCWS--SPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 254 ~~~vl~h~~--d~~~~l~~i~~~LkpgG~li 282 (351)
++..+++.. ....+++++.++| ||.++
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred EcCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence 998877764 3357889999988 55443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=119.80 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=87.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CC-CCCCCeEEEEecCCC-CCCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SN-FPKENFLLVRADISR-LPFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g-~~~~~i~~~~~d~~~-lp~~~~~fD~V~ 253 (351)
.+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+ ...++++++.+|+.+ ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 457999999999999999998755669999999999999999987641 01 114789999999876 344467899999
Q ss_pred ecccccc-CCC------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHC-WSS------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h-~~d------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+....++ ... ...++++++++|+|||++++....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 9765443 112 268899999999999999987543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=123.64 Aligned_cols=102 Identities=20% Similarity=0.347 Sum_probs=85.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG- 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~- 255 (351)
++++|||||||+|.++..+++.|. .+|+|+|.|+ |++.|++.+..+ |. ..+|.++.++++++.++ ++||+|++-
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n-~~-~~~i~~i~~~~~~~~lp-e~~DvivsE~ 157 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFN-GL-EDRVHVLPGPVETVELP-EQVDAIVSEW 157 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHT-TC-TTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHc-CC-CceEEEEeeeeeeecCC-ccccEEEeec
Confidence 577999999999999999998874 5899999996 889999888776 32 57899999999998766 679999983
Q ss_pred --cccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 256 --AAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 --~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
..+.+-.....++....+.|+|||.++-
T Consensus 158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 158 MGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccchhhhHHHHHHhhCCCCceECC
Confidence 4455555677888899999999999764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=119.72 Aligned_cols=107 Identities=10% Similarity=0.046 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CC------CCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF------ASS 247 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~------~~~ 247 (351)
.++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..+++++.+|+.+. +. .++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~-~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-GV-DHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCCeEEEECCHHHHHHHHHhccCCCC
Confidence 4467999999999999999999854 579999999999999999998876 22 35799999998653 31 157
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+||+|++... ..+...+++++.++|+|||++++....
T Consensus 156 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 156 SYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp CBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred CEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 8999998654 346788999999999999999986543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-12 Score=108.38 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++ .+++++++|+.+++ ++||+|+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~ 115 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWI 115 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEE
Confidence 34467899999999999999999884 347999999999999999873 37899999998875 6899999
Q ss_pred eccccccCCC--hHHHHHHHHhcc
Q 018740 254 AGAAIHCWSS--PSTGVAEISRVL 275 (351)
Q Consensus 254 ~~~vl~h~~d--~~~~l~~i~~~L 275 (351)
++..++|+.+ ...+++++.+++
T Consensus 116 ~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp ECCCC-------CHHHHHHHHHHE
T ss_pred ECCCchhccCchhHHHHHHHHHhc
Confidence 9999999865 347899999988
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=117.54 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=91.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (351)
...+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..++.++.+|+.+. +
T Consensus 49 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~-~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 49 GQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-GL-ENKIFLKLGSALETLQ 126 (239)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCCEEEEECCHHHHHH
Confidence 33444444444577999999999999999999854 569999999999999999998765 21 23599999997542 2
Q ss_pred --------------CCC--CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 --------------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 --------------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++ ++||+|++....+ +...+++++.++|+|||++++.....
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 222 7899999876543 45688999999999999999976543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=119.89 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=85.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.... +...++++++.+|+.+. +..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4579999999999999999987556799999999999999999876410 11146899999998653 333578999998
Q ss_pred ccccccCC---C--hHHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~---d--~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
... +++. . ...+++++.++|+|||++++...
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 643 2221 1 16889999999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=116.77 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCC--Cc
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFAS--SS 248 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~--~~ 248 (351)
.++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..++.++.+|+.+ ++..+ ++
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~-~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-GV-AEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 3467999999999999999998754 569999999999999999988765 22 2469999999743 33333 78
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||+|++.... .+...+++++.++|+|||++++.....
T Consensus 149 fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 149 FDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred cCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 9999986552 356788999999999999999976543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-13 Score=120.31 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=87.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++... +. ..+++++.+|+.++
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~-~~-~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT-PV-ASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS-TT-GGGEEEEESCTTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhc-CC-CCceEEEEcceecc
Confidence 44556777777777788999999999999999999976 9999999999999999987653 11 25899999999988
Q ss_pred CCCCCceeeEEec-----------cccccCCChHHHH----HHH--HhcccCCcEEE
Q 018740 243 PFASSSIDAVHAG-----------AAIHCWSSPSTGV----AEI--SRVLRPGGVFV 282 (351)
Q Consensus 243 p~~~~~fD~V~~~-----------~vl~h~~d~~~~l----~~i--~~~LkpgG~li 282 (351)
+++ .||+|+++ .+++|.++...++ +|+ +++|+|||.++
T Consensus 90 ~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 90 DLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 764 79999996 4455554443211 333 46899999653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=118.90 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=85.7
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CCCCCceeeEEecc
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 256 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~ 256 (351)
.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... ..++++++.+|+.+. .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 4999999999999999999777779999999999999999987543 247899999998664 23467899999854
Q ss_pred ccccC-C---ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 257 AIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 257 vl~h~-~---d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+.. + ....++++++++|+|||++++....
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 32221 1 1258899999999999999987754
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=116.13 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=96.5
Q ss_pred CCCCcHHHHHHHHhcc----CCCCCCeEEEEcCccCHHHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHhhhCCCC
Q 018740 158 GFPGPEKEFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQESNFP 228 (351)
Q Consensus 158 ~~~~~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~g~~ 228 (351)
.++.+......+...+ ...++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...
T Consensus 107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~---- 182 (344)
T 2f8l_A 107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---- 182 (344)
T ss_dssp GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----
T ss_pred cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC----
Confidence 3556665544433332 4445679999999999999998877532 58999999999999999988766
Q ss_pred CCCeEEEEecCCCCCCCCCceeeEEeccccccCCChH------------------HHHHHHHhcccCCcEEEEEeec
Q 018740 229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS------------------TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 229 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..++.+.++|..... ..+.||+|+++-.+.++++.. .+++++.+.|+|||++++..+.
T Consensus 183 g~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 183 RQKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp TCCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 337889999986633 457899999997776654332 5799999999999999998876
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-12 Score=121.82 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=93.9
Q ss_pred HHHhccCCC--CCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 168 LMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 168 ~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
.+...+... ++.+|||+|||+|..+..+++... ...|+++|+|+.+++.+++++... | ..++.++++|+..++.
T Consensus 106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~-g--~~nv~~~~~D~~~~~~ 182 (479)
T 2frx_A 106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC-G--ISNVALTHFDGRVFGA 182 (479)
T ss_dssp HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH-T--CCSEEEECCCSTTHHH
T ss_pred HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCcEEEEeCCHHHhhh
Confidence 334455555 788999999999999999998742 469999999999999999999876 2 3589999999988763
Q ss_pred -CCCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 -ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 -~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+++||+|++. +++.+-++ ...+|+++.++|||||++++++...
T Consensus 183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 45789999972 34444333 2367999999999999999988654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=114.82 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=89.5
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F 244 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~ 244 (351)
.+.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++... |. ..+++++.+|+.+. + +
T Consensus 60 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~-~~~i~~~~~d~~~~~~~~ 137 (229)
T 2avd_A 60 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EA-EHKIDLRLKPALETLDEL 137 (229)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TC-TTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CC-CCeEEEEEcCHHHHHHHH
Confidence 333333334567999999999999999998754 569999999999999999998775 22 36899999998543 1 1
Q ss_pred CC----CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 AS----SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~----~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.. ++||+|++... ..+...+++++.++|+|||++++....
T Consensus 138 ~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 138 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred HhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 11 68999998654 345678899999999999999986654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=111.89 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=109.9
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.....+...+.. ..+|||||||+|.++..++...+..+|+++|+++.|++.+++++... ..+..+...|...-+
T Consensus 121 ~fY~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~ 194 (281)
T 3lcv_B 121 EFYRELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSC
T ss_pred HHHHHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccC
Confidence 334445555533 67999999999999999998888889999999999999999999887 566889999987655
Q ss_pred CCCCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+.+.||+|+++-+++|+.+.. ..+ ++.+.|+|+|+++-- +... .....+. +... -.+.|+
T Consensus 195 -p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf-p~ks-l~Grs~g---m~~~-----------Y~~~~e 256 (281)
T 3lcv_B 195 -LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF-PTKS-LGQRSKG---MFQN-----------YSQSFE 256 (281)
T ss_dssp -CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE-ECC--------C---HHHH-----------HHHHHH
T ss_pred -CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec-cchh-hcCCCcc---hhhH-----------HHHHHH
Confidence 467899999999999997553 444 899999999977643 3211 0011111 1111 135788
Q ss_pred HHHHHCCCeEEEEEecCeE
Q 018740 322 DLCRACGLVDFKCTRNRGF 340 (351)
Q Consensus 322 ~ll~~aGf~~v~~~~~g~~ 340 (351)
+.+.+.|..+-+.......
T Consensus 257 ~~~~~~g~~~~~~~~~nEl 275 (281)
T 3lcv_B 257 SQARERSCRIQRLEIGNEL 275 (281)
T ss_dssp HHHHHHTCCEEEEEETTEE
T ss_pred HHHHhcCCceeeeeecCee
Confidence 8888889965544444443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=110.14 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=104.3
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+...+. ++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++..+ +. ..++.++.+|+.+++ ..
T Consensus 117 ~ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N-~v-~~~v~~~~~D~~~~~-~~ 190 (278)
T 3k6r_A 117 VRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN-KV-EDRMSAYNMDNRDFP-GE 190 (278)
T ss_dssp HHHHHHCC--TTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT-TC-TTTEEEECSCTTTCC-CC
T ss_pred HHHHHhcC--CCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEeCcHHHhc-cc
Confidence 34555554 488999999999999999998873 58999999999999999999887 33 467999999998876 35
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
+.||.|++... +....+|..+.++|+|||++.+.....+. ...-...+.++++++.
T Consensus 191 ~~~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~--------------------~~~~~~~e~i~~~~~~ 246 (278)
T 3k6r_A 191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK--------------------LMPREPFETFKRITKE 246 (278)
T ss_dssp SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--------------------GTTTTTHHHHHHHHHH
T ss_pred cCCCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeeccc--------------------ccchhHHHHHHHHHHH
Confidence 78999997532 34457788899999999998776554321 0111234677888899
Q ss_pred CCCeEE
Q 018740 327 CGLVDF 332 (351)
Q Consensus 327 aGf~~v 332 (351)
.|+.+.
T Consensus 247 ~g~~v~ 252 (278)
T 3k6r_A 247 YGYDVE 252 (278)
T ss_dssp TTCEEE
T ss_pred cCCcEE
Confidence 999753
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=125.27 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (351)
.+...+...++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.+++++... | .. +.++++|+.+++ ..
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~-G--~~-v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW-G--AP-LAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH-C--CC-CEEECSCHHHHHHHH
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-C--Ce-EEEEECCHHHhhhhc
Confidence 445566677889999999999999999998743 368999999999999999999887 3 23 899999987765 24
Q ss_pred CCceeeEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.++||+|++ ..++.+-++. ..+|+++.++|||||+++.++-..
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 678999995 2344443432 578999999999999999987653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=115.19 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=85.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++.... +...++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4679999999999999999987666799999999999999999875420 01147899999998663 323678999998
Q ss_pred ccccccCCCh----HHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWSSP----STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....++.+.. ..++++++++|+|||++++...
T Consensus 158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5443222211 5889999999999999998654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=119.59 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCC-C-CCCCceeeE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-P-FASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~l-p-~~~~~fD~V 252 (351)
..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .+...++++++.+|+.+. + .++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3467999999999999999998865679999999999999999987541 011146899999998653 2 345789999
Q ss_pred Eecccc--ccCCC--hHHHHHHHHhcccCCcEEEEEe
Q 018740 253 HAGAAI--HCWSS--PSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 253 ~~~~vl--~h~~d--~~~~l~~i~~~LkpgG~li~~~ 285 (351)
++.... ++..+ ...+++++.++|+|||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 985431 11111 3688999999999999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=118.18 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=82.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCC-CCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 254 (351)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++.... +...++++++.+|+.+ ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 3579999999999999999987666799999999999999999875420 1114789999999865 3334678999998
Q ss_pred ccccccCCCh-----HHHHHHHHhcccCCcEEEEEe
Q 018740 255 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 255 ~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~ 285 (351)
... +++... ..+++++.++|+|||++++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 553 333211 578999999999999999865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=109.25 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE-EecCCCCC-
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP- 243 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~-~~d~~~lp- 243 (351)
..++.+|||+|||+|.++..+++..+. .+|+|+|+|+.+ ...++.++ .+|+...+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT 85 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence 445789999999999999999998532 699999999831 13568888 88887643
Q ss_pred -------CCCCceeeEEecccccc----CCCh-------HHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -------FASSSIDAVHAGAAIHC----WSSP-------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -------~~~~~fD~V~~~~vl~h----~~d~-------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++++||+|++...++. ..+. ..+++++.++|+|||.+++.++.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 33568999999765443 2333 47899999999999999998764
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-13 Score=121.10 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE--EecCCCCCCCCCceee
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPFASSSIDA 251 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~--~~d~~~lp~~~~~fD~ 251 (351)
...++.+|||+|||+|.++..+++. .+|+|+|+++ |+..++++.... .....++.++ ++|+..+| +++||+
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~ 151 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME--PFQADT 151 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence 3456789999999999999999988 3899999998 543332210000 0001278899 99998876 678999
Q ss_pred EEeccccccCCChH-------HHHHHHHhcccCCc--EEEEEeec
Q 018740 252 VHAGAAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl~h~~d~~-------~~l~~i~~~LkpgG--~li~~~~~ 287 (351)
|+|..+ ++..++. .+|+++.++|+||| .+++..+.
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999877 5544432 37899999999999 99987665
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=119.34 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCC-CCCCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~ 253 (351)
..+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... .+...++++++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 3467999999999999999998866679999999999999999987641 01124789999999865 344467899999
Q ss_pred eccccccCC----ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~----d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+....+..+ ....+++++.++|+|||++++...+
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 854432211 1246899999999999999987643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-13 Score=120.21 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=78.5
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE--EecCCCCCCCCCcee
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPFASSSID 250 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~--~~d~~~lp~~~~~fD 250 (351)
....++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++..... .....++.++ ++|+..++ +++||
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC--CCCCc
Confidence 33456789999999999999999987 3899999998 533322110000 0001278899 89999876 67899
Q ss_pred eEEeccccccCCChH-------HHHHHHHhcccCCc--EEEEEeec
Q 018740 251 AVHAGAAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI 287 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~-------~~l~~i~~~LkpgG--~li~~~~~ 287 (351)
+|+|..+ ++..++. .+|+++.++|+||| .+++..+.
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999877 5554432 37899999999999 99987765
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=115.16 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=83.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC-------CCCCeEEEEecCCCC-CCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-------PKENFLLVRADISRL-PFASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~-------~~~~i~~~~~d~~~l-p~~~~ 247 (351)
.+.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++ ... +. ..++++++.+|+.+. +. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 4679999999999999999988 5679999999999999999987 210 11 247899999998653 32 57
Q ss_pred ceeeEEeccccccCCC-----hHHHHHHHHhcccCCcEEEEEeec
Q 018740 248 SIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d-----~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+||+|++.... ++.. ...+++++.++|+|||++++....
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 89999986543 2211 257899999999999999987543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=114.00 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-C-----CCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----ASS 247 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-~-----~~~ 247 (351)
.++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++... |. ..+++++.+|+.+. + + +.+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~-~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-GV-EHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 4567999999999999999998854 579999999999999999998876 32 34799999998653 2 1 257
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+||+|++.... .+...+++++.++|+|||++++....
T Consensus 147 ~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 147 SYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp CEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 89999986432 34578899999999999999886543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=123.18 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=92.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~ 245 (351)
.+...+...++.+|||+|||+|..+..+++.. ....|+++|+|+.+++.+++++... | ..++.++.+|+..++ ..
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~-g--~~nv~v~~~Da~~l~~~~ 172 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW-G--VSNAIVTNHAPAELVPHF 172 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH-T--CSSEEEECCCHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEeCCHHHhhhhc
Confidence 45556677788999999999999999998763 2358999999999999999999887 3 457999999987764 23
Q ss_pred CCceeeEEecc------ccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~~------vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++||+|++.- ++.+-++ ...+|+++.++|||||+++.+|-..
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 57899999732 2322111 1267999999999999999887653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=105.96 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||.|.++..+. +..+|+|+|+|+.+++.+++.+... ..+..+..+|....+.+ ++||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence 457799999999999999888 4569999999999999999998776 58889999999887754 489999999
Q ss_pred cccccCCChH-HHHHHHHhcccCCcEEEE
Q 018740 256 AAIHCWSSPS-TGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 ~vl~h~~d~~-~~l~~i~~~LkpgG~li~ 283 (351)
-++||+.+.. ..+.++.+.|+++|+++-
T Consensus 176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 176 KLLPLLEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp SCHHHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred HHHHHhhhhchhhHHHHHHHhcCCCEEEE
Confidence 8888885432 334488889999876654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=105.71 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC---------
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--------- 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~--------- 245 (351)
..++.+|||+|||+|.++..+++.+ .+|+|+|+++.. ..+++.++++|+.+.+..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 4568899999999999999999884 499999999741 146899999999886421
Q ss_pred --CCceeeEEeccccccCC----C-------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 246 --SSSIDAVHAGAAIHCWS----S-------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 --~~~fD~V~~~~vl~h~~----d-------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.++||+|++........ | ...+++.+.++|||||.|++..+.
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 14899999965432211 1 246788999999999999987664
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=113.66 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=82.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.+.+|||||||+|.++..+++. + .+|+++|+++.+++.|++++... .+...++++++.+|..... ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4579999999999999999888 5 79999999999999999875431 0111468999999997764 789999985
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|..+++++.++|+|||++++...
T Consensus 147 -----~~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 147 -----QEPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp -----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence 46788899999999999999998643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-12 Score=113.09 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. .++++++.+|+.++
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhC
Confidence 45566777777777788999999999999999999975 999999999999999988653 36899999999998
Q ss_pred CCCC-CceeeEEec-----------cccccCCChHHHH----HHHHhcccCCcEE
Q 018740 243 PFAS-SSIDAVHAG-----------AAIHCWSSPSTGV----AEISRVLRPGGVF 281 (351)
Q Consensus 243 p~~~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~i~~~LkpgG~l 281 (351)
++++ ..|+ |+++ ..++|...+..++ +.+.|+++|+|.+
T Consensus 89 ~~~~~~~~~-vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 89 KFPKNQSYK-IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CCCSSCCCE-EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred CcccCCCeE-EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 8764 4564 4433 3344444444444 4477888888854
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=116.91 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC----CCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~~fD~ 251 (351)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+ |....+++++++|+.+... ..++||+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n-gl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 357799999999999999999986 359999999999999999998876 2101289999999876521 1468999
Q ss_pred EEecc---------ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VHAGA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~~---------vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|++.- +.++..+...++.++.+.|+|||++++++..
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99863 2233355678899999999999999987654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.2e-12 Score=117.81 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CC---CCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF---ASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~---~~~~fD~ 251 (351)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..+ |....+++++++|+.+. +. ...+||+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n-~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 3577999999999999999998652 48999999999999999998877 32112899999998663 21 2458999
Q ss_pred EEecccc-----ccCCCh----HHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VHAGAAI-----HCWSSP----STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl-----~h~~d~----~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|++.-.. .+..+. ..+++++.++|+|||++++++..
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9985332 233333 35678889999999999987654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-12 Score=118.19 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC----CCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~~fD~V 252 (351)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++..+ | ..++.++++|+.+... ..++||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n-~--~~~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLN-G--LGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHT-T--CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc-C--CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence 57799999999999999999884 49999999999999999998877 2 3559999999876531 25689999
Q ss_pred Eecccc---------ccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 253 HAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 253 ~~~~vl---------~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++.--. ++..+...++.++.++|+|||.+++.+..
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 984321 11233457899999999999999998764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=123.71 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~ 255 (351)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..+ |....+++++++|+.+ ++...++||+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~n-gl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLN-GLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 477999999999999999998764 47999999999999999999887 4423579999999976 34446789999985
Q ss_pred c-----------ccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 A-----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~-----------vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
- ++++..+...+++++.++|+|||++++++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3 2333345568899999999999999987654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=114.39 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=84.8
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~ 245 (351)
..+...+. ++.+|||+|||+|.++..+++.+. .|+++|+|+.+++.+++++..+ | ....+.++|+.+. +..
T Consensus 206 ~~l~~~~~--~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~n-g---~~~~~~~~D~~~~l~~~ 277 (393)
T 4dmg_A 206 RLFEAMVR--PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRL-G---LRVDIRHGEALPTLRGL 277 (393)
T ss_dssp HHHHTTCC--TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T---CCCEEEESCHHHHHHTC
T ss_pred HHHHHHhc--CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHh-C---CCCcEEEccHHHHHHHh
Confidence 33444433 478999999999999999999876 6999999999999999999887 2 2345678888664 221
Q ss_pred CCceeeEEecccccc---------CCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h---------~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.||+|++.-.... ..+...+++.+.++|+|||.+++.+..
T Consensus 278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 344999998543211 123357889999999999999976654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=116.25 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC----CCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~~fD~V 252 (351)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+ |. ..++.++++|+.+... ..++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n-~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLN-GV-EDRMKFIVGSAFEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc-CC-CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence 57899999999999999999874 348999999999999999998876 22 1289999999876531 25689999
Q ss_pred Eeccc---------cccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 253 HAGAA---------IHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 253 ~~~~v---------l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++.-. .++..+...++.++.++|+|||.+++.+...
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 98532 2222445678999999999999999887653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.1e-14 Score=123.85 Aligned_cols=112 Identities=12% Similarity=0.135 Sum_probs=87.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..+++++++|+.+++++
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFP 90 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCC
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCcc
Confidence 45667777777788999999999999999999874 999999999999998876542 36899999999998876
Q ss_pred C-CceeeEEec-----------cccccCCChHHHH----HHHHhcccCCcEEEEEe
Q 018740 246 S-SSIDAVHAG-----------AAIHCWSSPSTGV----AEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~i~~~LkpgG~li~~~ 285 (351)
+ ++| .|+++ .+++|..++...+ +.+.++|+|||.+.+..
T Consensus 91 ~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 91 NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4 678 56654 2234444555556 77999999999876644
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=110.39 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=85.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--- 241 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~--- 241 (351)
+.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+ | ..++.++++|+.+
T Consensus 274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~-~--~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLN-G--LQNVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEECCTTSCCS
T ss_pred HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEECCHHHHhh
Confidence 455666666666778999999999999999998854 9999999999999999998776 2 3589999999977
Q ss_pred -CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 242 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 242 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+++.+++||+|++.---.-. ..+++.+.+ ++|+++++++.
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 34566789999974322111 244555543 78999888753
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=111.62 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=91.2
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 234 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~ 234 (351)
.+.++.+....+.+.+.+...++.+|||+|||+|.++..++++. +..+++|+|+++.+++.| .++.+
T Consensus 18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~ 85 (421)
T 2ih2_A 18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEG 85 (421)
T ss_dssp ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEE
T ss_pred CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcE
Confidence 34566778888888888876567799999999999999999863 456999999999988665 36889
Q ss_pred EEecCCCCCCCCCceeeEEeccccc----------cCCCh-------------------HHHHHHHHhcccCCcEEEEEe
Q 018740 235 VRADISRLPFASSSIDAVHAGAAIH----------CWSSP-------------------STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 235 ~~~d~~~lp~~~~~fD~V~~~~vl~----------h~~d~-------------------~~~l~~i~~~LkpgG~li~~~ 285 (351)
+++|+...+ ..++||+|+++--.. |+.+. ..+++.+.++|+|||.+++..
T Consensus 86 ~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 86 ILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp EESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999998765 346899999962221 12111 156889999999999999988
Q ss_pred ec
Q 018740 286 YI 287 (351)
Q Consensus 286 ~~ 287 (351)
+.
T Consensus 165 p~ 166 (421)
T 2ih2_A 165 PA 166 (421)
T ss_dssp EG
T ss_pred Ch
Confidence 86
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=115.13 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=101.9
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-------------CCCeEEEEeCCHHHHHHHHHHHhh
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LFSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
+.++.|....+.+.+.+.+.++.+|||.|||+|.++..+.+.. ...+++|+|+++.+++.|+.++..
T Consensus 151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l 230 (445)
T 2okc_A 151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 230 (445)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence 3467788888899888888788899999999999998887642 124799999999999999998776
Q ss_pred hCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccCCC-----------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS-----------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 224 ~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-----------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
. |....++.+.++|....+.. .+||+|+++-.+.+... ...+++.+.+.|+|||++.+..+
T Consensus 231 ~-g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 231 H-GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp T-TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h-CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 5 32112677899998776643 48999999866554321 13789999999999999999887
Q ss_pred c
Q 018740 287 I 287 (351)
Q Consensus 287 ~ 287 (351)
.
T Consensus 309 ~ 309 (445)
T 2okc_A 309 D 309 (445)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=108.00 Aligned_cols=118 Identities=14% Similarity=0.004 Sum_probs=85.1
Q ss_pred cCCCCCCeEEEEcCcc------CHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEE-EEecCCCCCC
Q 018740 173 LKPVLGGNIIDASCGS------GLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPF 244 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~------G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~-~~~d~~~lp~ 244 (351)
+...++.+|||+|||+ |. ..+++..+ ..+|+|+|+|+. + .++++ +++|+.++++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCc
Confidence 4556788999999944 65 44444433 569999999987 1 25678 9999998875
Q ss_pred CCCceeeEEecccccc--------C---CChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCcc
Q 018740 245 ASSSIDAVHAGAAIHC--------W---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 313 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h--------~---~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (351)
+ ++||+|+++...+. . .....+++++.++|||||.+++..+...
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~------------------------ 175 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS------------------------ 175 (290)
T ss_dssp S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS------------------------
T ss_pred c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC------------------------
Confidence 4 68999998643221 1 1124789999999999999999654321
Q ss_pred CCCHHHHHHHHHHCCCeEEEEE
Q 018740 314 FLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 314 ~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
...++.+++++.||..++..
T Consensus 176 --~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 176 --WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp --CCHHHHHHHTTEEEEEEEEE
T ss_pred --CHHHHHHHHHHcCCcEEEEE
Confidence 12478888999999877654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-11 Score=108.62 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=80.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++... + .+++.++.+|+.++
T Consensus 28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~-~--~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYE-G--YNNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHT-T--CCCEEC----CCSS
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-C--CCceEEEECchhhC
Confidence 34456666777777788999999999999999998865 9999999999999999988654 1 36899999999988
Q ss_pred CCCCCceeeEEeccccccCCChH--HHH---------------HHHHhcccCCc
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPS--TGV---------------AEISRVLRPGG 279 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~--~~l---------------~~i~~~LkpgG 279 (351)
++ ++||+|+++...+ +..+. .++ +.+.|+++++|
T Consensus 103 ~~--~~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 103 VF--PKFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CC--CCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred Cc--ccCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 75 3799999864433 33332 333 44668888877
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-11 Score=106.66 Aligned_cols=88 Identities=10% Similarity=0.152 Sum_probs=76.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. .++++++++|+.++
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~ 108 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKV 108 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTS
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhC
Confidence 44566777778877889999999999999999999865 999999999999999998773 47899999999999
Q ss_pred CCCCCceeeEEeccc
Q 018740 243 PFASSSIDAVHAGAA 257 (351)
Q Consensus 243 p~~~~~fD~V~~~~v 257 (351)
++++.+||+|+++..
T Consensus 109 ~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 109 DLNKLDFNKVVANLP 123 (295)
T ss_dssp CGGGSCCSEEEEECC
T ss_pred CcccCCccEEEEeCc
Confidence 888888999997744
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-12 Score=114.48 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeC----CHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCCce
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI 249 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~~f 249 (351)
..++.+|||+|||+|.++..+++. . +|+|+|+ ++.+++... .. ....+++.++++ |+..++ .++|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~~~~~----~~-~~~~~~v~~~~~~D~~~l~--~~~f 149 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHEEPIP----MS-TYGWNLVRLQSGVDVFFIP--PERC 149 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSCCCCC----CC-STTGGGEEEECSCCTTTSC--CCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHHHHHH----hh-hcCCCCeEEEeccccccCC--cCCC
Confidence 345789999999999999999988 2 8999999 554432111 00 011257999999 888775 5689
Q ss_pred eeEEeccccc---cCCChH---HHHHHHHhcccCCcEEEEEeecc
Q 018740 250 DAVHAGAAIH---CWSSPS---TGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 250 D~V~~~~vl~---h~~d~~---~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+|+|..+++ +..|.. .+|.++.++|||||.+++..+..
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9999977653 222222 57899999999999999866543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=107.24 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|||+|||+|.++.. ++. ..+|+|+|+|+.+++.+++++..+ +. ..++.++++|+.+.. ++||+|++.-
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n-~l-~~~v~~~~~D~~~~~---~~fD~Vi~dp 266 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLN-KL-EHKIIPILSDVREVD---VKGNRVIMNL 266 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEESCGGGCC---CCEEEEEECC
T ss_pred CCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHc-CC-CCcEEEEECChHHhc---CCCcEEEECC
Confidence 478999999999999999 773 459999999999999999998876 22 257999999998875 7899999853
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.. ....++.++.++|+|||.+++.+...
T Consensus 267 P~----~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 267 PK----FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TT----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred cH----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 21 12378999999999999999987753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-10 Score=106.25 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+ | .. ++++.+|+.++... +||+|++.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~n-g--l~-v~~~~~d~~~~~~~--~fD~Vv~d 360 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEIN-N--VD-AEFEVASDREVSVK--GFDTVIVD 360 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T--CC-EEEEECCTTTCCCT--TCSEEEEC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-C--Cc-EEEEECChHHcCcc--CCCEEEEc
Confidence 4477999999999999999999865 9999999999999999998876 2 23 99999999887532 89999985
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
-.-.. -...+++.+. .|+|+|+++++.
T Consensus 361 PPr~g--~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 361 PPRAG--LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CCTTC--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred CCccc--hHHHHHHHHH-hcCCCcEEEEEC
Confidence 43211 1124556554 599999999864
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=107.78 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=92.9
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--------------------------------------Ce
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SL 203 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~ 203 (351)
.+.++..+.......++..|||.+||+|.++..++..+.+ .+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 3556667777777777889999999999999888775432 46
Q ss_pred EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc-cCC---ChHHHHHHHHhcccC--
Q 018740 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH-CWS---SPSTGVAEISRVLRP-- 277 (351)
Q Consensus 204 v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~~i~~~Lkp-- 277 (351)
|+|+|+|+.|++.|++++... |. ..++.+.++|+.+++.+ .+||+|+++--.. .+. +...+.+++.+.|++
T Consensus 266 V~GvDid~~al~~Ar~Na~~~-gl-~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEA-GL-GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-TC-TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999998876 32 34699999999998754 5899999984321 121 233556666667766
Q ss_pred CcEEEEEeec
Q 018740 278 GGVFVGTTYI 287 (351)
Q Consensus 278 gG~li~~~~~ 287 (351)
||.+++.+..
T Consensus 343 g~~~~iit~~ 352 (393)
T 3k0b_A 343 TWSVYVLTSY 352 (393)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEECC
Confidence 9998887765
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-09 Score=99.29 Aligned_cols=157 Identities=11% Similarity=0.005 Sum_probs=102.5
Q ss_pred CCeEEEEcCccCHHHHHHHH--------hC-------CCCeEEEEeCCHHHHHHHHHHHhhhCC----------C--CCC
Q 018740 178 GGNIIDASCGSGLFSRIFAK--------SG-------LFSLVVALDYSENMLKQCYEFVQQESN----------F--PKE 230 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~g----------~--~~~ 230 (351)
.-+|+|+|||+|.++..+.. .. |..+|+.-|+-.+.....-+.+..... . ...
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999998877622 21 567899999877766555444433200 0 001
Q ss_pred CeEEEEecCCCCCCCCCceeeEEeccccccCCC--------------------------------------hHHHHHHHH
Q 018740 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--------------------------------------PSTGVAEIS 272 (351)
Q Consensus 231 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~l~~i~ 272 (351)
-+..+.+.+..-.+++++||+|+++.+|||+.+ ...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233444445678999999999999999873 234688889
Q ss_pred hcccCCcEEEEEeeccCCCCCcc---------hHHHHHHHHH-----------hhccCCccCCCHHHHHHHHH-HCCCeE
Q 018740 273 RVLRPGGVFVGTTYIVDGPFNLI---------PFSRLLRQNM-----------MQISGSYTFLSEREIEDLCR-ACGLVD 331 (351)
Q Consensus 273 ~~LkpgG~li~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~~~~s~~~l~~ll~-~aGf~~ 331 (351)
+.|+|||+++++........... ..+...+..+ ....-.+.+.+.+++..+++ ..||.+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999999875432211 1111111111 00122456789999999998 599987
Q ss_pred EEE
Q 018740 332 FKC 334 (351)
Q Consensus 332 v~~ 334 (351)
.+.
T Consensus 293 ~~l 295 (374)
T 3b5i_A 293 DKL 295 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=102.86 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=93.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--------------------------------------CeE
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLV 204 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v 204 (351)
+.++..+.......++..+||.+||+|.++..++..+.+ .++
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 555666777777777889999999999999888765432 369
Q ss_pred EEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc-cCCC---hHHHHHHHHhcccC--C
Q 018740 205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH-CWSS---PSTGVAEISRVLRP--G 278 (351)
Q Consensus 205 ~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~d---~~~~l~~i~~~Lkp--g 278 (351)
+|+|+++.|++.|++++... |. ...+.+.++|+.+++.+ .+||+|+++--.. .+.+ ...+.+++.+.||+ |
T Consensus 260 ~GvDid~~al~~Ar~Na~~~-gl-~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREV-GL-EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEECCHHHHHHHHHHHHHc-CC-CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999876 32 34699999999998764 4899999984332 2322 34666777777776 9
Q ss_pred cEEEEEeec
Q 018740 279 GVFVGTTYI 287 (351)
Q Consensus 279 G~li~~~~~ 287 (351)
|.+++.+..
T Consensus 337 ~~~~iit~~ 345 (384)
T 3ldg_A 337 WSQFILTND 345 (384)
T ss_dssp SEEEEEESC
T ss_pred cEEEEEECC
Confidence 999887764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=99.75 Aligned_cols=85 Identities=11% Similarity=0.196 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. ..+++++++|+.++
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhC
Confidence 44566777888888889999999999999999999875 999999999999999998754 36899999999998
Q ss_pred CCCC----CceeeEEec
Q 018740 243 PFAS----SSIDAVHAG 255 (351)
Q Consensus 243 p~~~----~~fD~V~~~ 255 (351)
++++ +.|| |+++
T Consensus 88 ~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 88 DFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CGGGSCCSSCEE-EEEE
T ss_pred CHHHhccCCCeE-EEec
Confidence 7643 4688 5543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=103.17 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=94.4
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--------------------------------------Ce
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SL 203 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~ 203 (351)
.+.++..+.......++.+|||++||+|.++..++..+.. .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 3455667777777777889999999999999988776421 47
Q ss_pred EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccc-cCC---ChHHHHHHHHhcccC--
Q 018740 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH-CWS---SPSTGVAEISRVLRP-- 277 (351)
Q Consensus 204 v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~~i~~~Lkp-- 277 (351)
|+|+|+++.+++.|++++... |. ..++.+.++|+.+++.+ .+||+|+++--.. .+. +...+.+++.+.|++
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~-gl-~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIA-GV-DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred EEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999998877 22 24799999999998754 5899999975532 222 234667777777776
Q ss_pred CcEEEEEeec
Q 018740 278 GGVFVGTTYI 287 (351)
Q Consensus 278 gG~li~~~~~ 287 (351)
||.+++.+..
T Consensus 337 g~~~~iit~~ 346 (385)
T 3ldu_A 337 NWSYYLITSY 346 (385)
T ss_dssp SCEEEEEESC
T ss_pred CCEEEEEECC
Confidence 8888887664
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=99.80 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
.+...+...++.+|||+|||+|..+..+++. +...+|+++|+++.+++.++++++.. | ..++.++.+|+.+++...
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~-g--~~~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA-G--VSCCELAEEDFLAVSPSD 169 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-T--CCSEEEEECCGGGSCTTC
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-C--CCeEEEEeCChHhcCccc
Confidence 3445566777899999999999999999886 33469999999999999999999876 2 368999999998875332
Q ss_pred ---CceeeEEec------cccccCCC-----------h-------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 247 ---SSIDAVHAG------AAIHCWSS-----------P-------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 247 ---~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++||.|++. +++..-+| . ..+|+.+.++|+ ||+++.++-..
T Consensus 170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 579999962 23322111 1 246777878886 99988876543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.3e-10 Score=101.37 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=72.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++... ..++.++++|+.+++
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFL 90 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHH
Confidence 44556667777788999999999999999999865679999999999999999998776 368999999998875
Q ss_pred CC---CCceeeEEecc
Q 018740 244 FA---SSSIDAVHAGA 256 (351)
Q Consensus 244 ~~---~~~fD~V~~~~ 256 (351)
+. .++||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 11 15799999754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=98.53 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=72.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++ +|||||||+|.++..+++.+. +|+|+|+++.|++.+++++. ..+++++++|+.++
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGGS
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcC------CCCEEEEECChhhC
Confidence 4556777888787778 999999999999999999975 99999999999999998754 25899999999988
Q ss_pred CCCCC-ceeeEEeccc
Q 018740 243 PFASS-SIDAVHAGAA 257 (351)
Q Consensus 243 p~~~~-~fD~V~~~~v 257 (351)
++++. .+|.|+++--
T Consensus 104 ~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 104 PWEEVPQGSLLVANLP 119 (271)
T ss_dssp CGGGSCTTEEEEEEEC
T ss_pred ChhhccCccEEEecCc
Confidence 77643 6888887643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=103.03 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+.+.+... +.+|||+|||+|.++..+++... +|+|+|+|+.+++.|++++..+ | ..+++++.+|+.++.
T Consensus 201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~n-g--~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAAN-H--IDNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHT-T--CCSEEEECCCSHHHH
T ss_pred HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-C--CCceEEEECCHHHHH
Confidence 3345555555543 56899999999999999988654 9999999999999999998876 2 368999999987642
Q ss_pred --CCC--------------CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 --FAS--------------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 --~~~--------------~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.. .+||+|++.--- ..+..++.+.|+++|.++..+.+
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred HHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECC
Confidence 111 379999863110 12356677888899988876554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-09 Score=98.70 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=99.7
Q ss_pred CCeEEEEcCccCHHHHHHHHh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHhhhCCCCC
Q 018740 178 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS-----------ENMLKQCYEFVQQESNFPK 229 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s-----------~~~~~~a~~~~~~~~g~~~ 229 (351)
.-+|+|+||++|.++..+... .|..+|+.-|+- +.+.+.+++. . |. .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~-g~-~ 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---N-GR-K 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---T-CC-C
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---c-cC-C
Confidence 468999999999998877665 355688899987 4433333221 1 11 1
Q ss_pred CCeEEEEecCC---CCCCCCCceeeEEeccccccCCChH---------------------------------------HH
Q 018740 230 ENFLLVRADIS---RLPFASSSIDAVHAGAAIHCWSSPS---------------------------------------TG 267 (351)
Q Consensus 230 ~~i~~~~~d~~---~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------------~~ 267 (351)
.+-.|+.+... .-.|+++++|+|+++.+|||+.+.. .+
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F 207 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF 207 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 23355555443 3568899999999999999986542 12
Q ss_pred HHHHHhcccCCcEEEEEeeccCCC--CCcc-hHHHHHHHH-----------HhhccCCccCCCHHHHHHHHHHCC-CeEE
Q 018740 268 VAEISRVLRPGGVFVGTTYIVDGP--FNLI-PFSRLLRQN-----------MMQISGSYTFLSEREIEDLCRACG-LVDF 332 (351)
Q Consensus 268 l~~i~~~LkpgG~li~~~~~~~~~--~~~~-~~~~~~~~~-----------~~~~~~~~~~~s~~~l~~ll~~aG-f~~v 332 (351)
|+..++.|+|||+++++....... .+.. ..+...+.. .......+.+.+.++++.++++.| |.+.
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~ 287 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL 287 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence 556689999999999999987653 2110 022222211 111233566789999999999985 6766
Q ss_pred EE
Q 018740 333 KC 334 (351)
Q Consensus 333 ~~ 334 (351)
+.
T Consensus 288 ~l 289 (384)
T 2efj_A 288 YL 289 (384)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=105.01 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=98.7
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC------------------CCeEEEEeCCHHHHHHH
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL------------------FSLVVALDYSENMLKQC 217 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~gvD~s~~~~~~a 217 (351)
.+.++.|....+.+.+.+.+.++.+|||.+||+|.++..+.+... ...++|+|+++.+++.|
T Consensus 148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 355778888888888888887888999999999999988776410 13799999999999999
Q ss_pred HHHHhhhCCCCC---CCeEEEEecCCCCC-CCCCceeeEEeccccccCCC--------------hHHHHHHHHhcccCCc
Q 018740 218 YEFVQQESNFPK---ENFLLVRADISRLP-FASSSIDAVHAGAAIHCWSS--------------PSTGVAEISRVLRPGG 279 (351)
Q Consensus 218 ~~~~~~~~g~~~---~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~~i~~~LkpgG 279 (351)
+.++... |... .++.+.++|....+ ...+.||+|+++--+..... ...+++.+.+.|+|||
T Consensus 228 ~~nl~l~-gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 228 LMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp HHHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHh-CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 9887665 2211 02678899976643 34578999999754433211 1378999999999999
Q ss_pred EEEEEeec
Q 018740 280 VFVGTTYI 287 (351)
Q Consensus 280 ~li~~~~~ 287 (351)
++.+..+.
T Consensus 307 r~a~V~p~ 314 (541)
T 2ar0_A 307 RAAVVVPD 314 (541)
T ss_dssp EEEEEEEH
T ss_pred EEEEEecC
Confidence 99998875
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.8e-09 Score=96.84 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=105.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh----------------CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE---ec
Q 018740 178 GGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR---AD 238 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~---~d 238 (351)
.-+|+|+||++|.++..+... .|..+|+.-|+..+.....-+.+.... ...+..|+. +.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESC
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchh
Confidence 357999999999877554433 356789999999888888877654320 001223444 44
Q ss_pred CCCCCCCCCceeeEEeccccccCCChH---------------------------------HHHHHHHhcccCCcEEEEEe
Q 018740 239 ISRLPFASSSIDAVHAGAAIHCWSSPS---------------------------------TGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 239 ~~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~~i~~~LkpgG~li~~~ 285 (351)
+..-.++++++|+|+++.+|||+.+.. .+|+..++.|+|||+++++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 555678899999999999999986421 34888899999999999999
Q ss_pred eccCCCCC-------cchHHHHHHHHHh-----------hccCCccCCCHHHHHHHHHHCCC-eEEE
Q 018740 286 YIVDGPFN-------LIPFSRLLRQNMM-----------QISGSYTFLSEREIEDLCRACGL-VDFK 333 (351)
Q Consensus 286 ~~~~~~~~-------~~~~~~~~~~~~~-----------~~~~~~~~~s~~~l~~ll~~aGf-~~v~ 333 (351)
.......+ ....+...+..+. .....+.+.+.++++.++++.|. .+.+
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~ 276 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH 276 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEE
Confidence 87754321 1222333222111 12335568899999999999966 5444
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-09 Score=98.25 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=81.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC------------CCCCeEEEEecCCCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF------------PKENFLLVRADISRLPF 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~------------~~~~i~~~~~d~~~lp~ 244 (351)
++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++.+... +..+++++++|+..+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999854568999999999999999998775100 12348999999866431
Q ss_pred -CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..+.||+|++.- ...+..++..+.+.|+|||+++++.
T Consensus 127 ~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999532 1245788999999999999888765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.8e-09 Score=93.99 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=64.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+.. .+|+|+|+|+.|++.++++. . .+++++++|+.
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-----~~v~~i~~D~~ 100 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-----ELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-----GGEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-----CCcEEEECChh
Confidence 445567777777778899999999999999999998761 23999999999999999873 2 57999999999
Q ss_pred CCCCCC
Q 018740 241 RLPFAS 246 (351)
Q Consensus 241 ~lp~~~ 246 (351)
++++++
T Consensus 101 ~~~~~~ 106 (279)
T 3uzu_A 101 TFDFGS 106 (279)
T ss_dssp GCCGGG
T ss_pred cCChhH
Confidence 987653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=90.10 Aligned_cols=91 Identities=14% Similarity=0.273 Sum_probs=69.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++ . ..+++++++|+.++
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~---~----~~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI---G----DERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS---C----CTTEEEECSCTTTC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc---c----CCCeEEEEcchhhC
Confidence 4455677777777788899999999999999999984 34999999999999999875 2 46899999999998
Q ss_pred CCCCCceeeEEeccccccC
Q 018740 243 PFASSSIDAVHAGAAIHCW 261 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~ 261 (351)
++++..-+.++..+.-.++
T Consensus 89 ~~~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 89 PFCSLGKELKVVGNLPYNV 107 (249)
T ss_dssp CGGGSCSSEEEEEECCTTT
T ss_pred ChhHccCCcEEEEECchhc
Confidence 8764221334444444444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=100.89 Aligned_cols=125 Identities=14% Similarity=0.040 Sum_probs=89.8
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC------------------------------------------
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG------------------------------------------ 199 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------ 199 (351)
.+.++..+.......++..|||.+||+|.++..++..+
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 35566667777777778899999999999998877642
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEecccc-ccCCC---hHHH---HHH
Q 018740 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAI-HCWSS---PSTG---VAE 270 (351)
Q Consensus 200 ~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl-~h~~d---~~~~---l~~ 270 (351)
+...++|+|+++.+++.|+.++... |. ...+.+.++|+.++. ...++||+|+++--. +.+.+ ...+ +.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~a-gv-~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLA-GI-GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHc-CC-CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 1247999999999999999999887 32 235999999998873 334489999998332 12222 2233 444
Q ss_pred HHhcccCCcEEEEEeecc
Q 018740 271 ISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 271 i~~~LkpgG~li~~~~~~ 288 (351)
+.+.+.|||.+++.++..
T Consensus 333 ~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 333 IMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHCTTCEEEEEESCH
T ss_pred HHHhhCCCCeEEEEeCCH
Confidence 455556899999988643
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-08 Score=96.40 Aligned_cols=147 Identities=18% Similarity=0.080 Sum_probs=107.3
Q ss_pred Chhhhhhhhhhhhh-----hhcCCCCCcHHHHHHHHhccC----CCCCCeEEEEcCccCHHHHHHHHhC---CCCeEEEE
Q 018740 140 PFMSFIYERGWRQN-----FVWGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVAL 207 (351)
Q Consensus 140 ~~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gv 207 (351)
+.+...|+...++. -..+.|+.|....+.+...+. +.++.+|||.+||+|.++..+.+.. ....++|+
T Consensus 175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~ 254 (542)
T 3lkd_A 175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ 254 (542)
T ss_dssp THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence 34455555444332 124567888988888888776 4567899999999999998887762 24589999
Q ss_pred eCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--C-CCCCceeeEEecccc--cc-----------------CC---
Q 018740 208 DYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--P-FASSSIDAVHAGAAI--HC-----------------WS--- 262 (351)
Q Consensus 208 D~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p-~~~~~fD~V~~~~vl--~h-----------------~~--- 262 (351)
|+++.++..|+.++... |....++.+.++|.... | .....||+|+++--+ .+ ++
T Consensus 255 Eid~~~~~lA~~Nl~l~-gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s 333 (542)
T 3lkd_A 255 ELNTSTYNLARMNMILH-GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS 333 (542)
T ss_dssp ESCHHHHHHHHHHHHHT-TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred ECcHHHHHHHHHHHHHc-CCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence 99999999999987765 33235788999998765 3 346789999987221 00 11
Q ss_pred C-hHHHHHHHHhccc-CCcEEEEEeec
Q 018740 263 S-PSTGVAEISRVLR-PGGVFVGTTYI 287 (351)
Q Consensus 263 d-~~~~l~~i~~~Lk-pgG~li~~~~~ 287 (351)
+ -..+++.+.+.|+ |||++.+..|.
T Consensus 334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 334 KADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred hhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 1 1258999999999 99999998876
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=96.60 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCC-eEEEEecCCCCC--CCCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP--FASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~-i~~~~~d~~~lp--~~~~~fD~ 251 (351)
.++.+|||++||+|.++..++....+ .+|+++|+++.+++.++++++.+ |. ..+ ++++.+|+.++. ...+.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-gl-~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-NI-PEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-TC-CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-CC-CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 34679999999999999999986422 48999999999999999999887 32 223 999999986532 12457999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
|++.- ...+..++..+.+.|+|||+++++.
T Consensus 129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 99754 2234678999999999999888766
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-08 Score=98.05 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=71.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...|||||||+|.++....+.+ ...+|+++|-|+ +...+++....+ |. ..+|+++.+|++++..+ +++|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-~~-~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-EW-GSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-TT-GGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-cC-CCeEEEEeCcceeccCC-cccCEEE
Confidence 4579999999999854444432 223689999997 566777776665 33 67899999999998765 6799999
Q ss_pred eccccccC--CChHHHHHHHHhcccCCcEEE
Q 018740 254 AGAAIHCW--SSPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 254 ~~~vl~h~--~d~~~~l~~i~~~LkpgG~li 282 (351)
+-..=..+ ......|....|.|||||+++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 73221101 112256778889999999864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-09 Score=96.52 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ .+++.|++++... +. ..+++++++|+.++
T Consensus 76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~-~~-~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 76 AKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQ-DT-AARINLHFGNAAEQ 151 (258)
T ss_dssp HHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHH-HH-HTTEEEEESCHHHH
T ss_pred HHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhh-CC-ccCeEEEECCHHHH
Confidence 3333444567999999999999999999865 999999999 9999998876544 11 13599999999774
Q ss_pred -C-CCC--CceeeEEecccccc
Q 018740 243 -P-FAS--SSIDAVHAGAAIHC 260 (351)
Q Consensus 243 -p-~~~--~~fD~V~~~~vl~h 260 (351)
+ +++ ++||+|++.-.+.|
T Consensus 152 l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 152 MPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHHHCCCSEEEECCCC--
T ss_pred HHhhhccCCCccEEEECCCCCC
Confidence 3 334 68999999766655
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=89.30 Aligned_cols=142 Identities=14% Similarity=0.072 Sum_probs=92.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHhhhC-----
Q 018740 177 LGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLK-----------QCYEFVQQES----- 225 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~gvD~s~---~~~~-----------~a~~~~~~~~----- 225 (351)
+..+|||||+|+|..+..+++. .|. .+++++|..+ +++. .+++.++.+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999988776553 442 4899999876 4444 5555554310
Q ss_pred ------CCCCCCeEEEEecCCC-CCCCC----CceeeEEecc-ccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 226 ------NFPKENFLLVRADISR-LPFAS----SSIDAVHAGA-AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 226 ------g~~~~~i~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
.....+++++.+|+.+ ++..+ ..||+|+... .-..-++ -..+++.+.++|+|||+|+. +..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa--- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS--- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC---
Confidence 0012467889999866 44322 2799999743 2221122 24789999999999999884 221
Q ss_pred CCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEEec-CeEEEEEEecC
Q 018740 292 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKP 348 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp 348 (351)
...++..|.++||.+.+.... +...+..+.|+
T Consensus 215 -------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 215 -------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp -------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred -------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 125778888899997764433 34456666554
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.4e-09 Score=92.88 Aligned_cols=86 Identities=7% Similarity=0.108 Sum_probs=64.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+.+.+...++.+|||||||+|.++. +. .+...+|+|+|+++.|++.+++++... ++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchhhCC
Confidence 334566666777778899999999999999 65 454222999999999999999865432 58999999999887
Q ss_pred CCCC-----ceeeEEecc
Q 018740 244 FASS-----SIDAVHAGA 256 (351)
Q Consensus 244 ~~~~-----~fD~V~~~~ 256 (351)
+++. ..|.|+++-
T Consensus 81 ~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHHHTSCEEEEEEC
T ss_pred HHHhhcccCCceEEEECC
Confidence 5431 245666553
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=97.67 Aligned_cols=145 Identities=18% Similarity=0.062 Sum_probs=103.1
Q ss_pred Chhhhhhhhhhhhh-----hhcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC--------------
Q 018740 140 PFMSFIYERGWRQN-----FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------- 200 (351)
Q Consensus 140 ~~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------- 200 (351)
+++...|+...++. -..+.|+.|....+.+.+.+.+.++ +|||.+||+|.++..+.+...
T Consensus 203 D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~ 281 (544)
T 3khk_A 203 DILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK 281 (544)
T ss_dssp CSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred hHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence 45555555443331 1335678899999999999887655 999999999999887754310
Q ss_pred -CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCceeeEEecccccc------------------
Q 018740 201 -FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGAAIHC------------------ 260 (351)
Q Consensus 201 -~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h------------------ 260 (351)
...++|+|+++.+++.|+.++... |. ..++.+.++|....+ +...+||+|+++--+..
T Consensus 282 ~~~~i~G~Eid~~~~~lA~~Nl~l~-gi-~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~ 359 (544)
T 3khk_A 282 KQISVYGQESNPTTWKLAAMNMVIR-GI-DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINT 359 (544)
T ss_dssp GGEEEEECCCCHHHHHHHHHHHHHT-TC-CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECC
T ss_pred hhceEEEEeCCHHHHHHHHHHHHHh-CC-CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCc
Confidence 348999999999999999988765 33 223444777765543 45678999999633221
Q ss_pred -------CCC---h-HHHHHHHHhcccCCcEEEEEeec
Q 018740 261 -------WSS---P-STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 261 -------~~d---~-~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++. . ..+++.+.+.|+|||++.+..|.
T Consensus 360 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 360 NGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp C--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred ccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 111 1 26899999999999999998875
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-07 Score=82.98 Aligned_cols=110 Identities=16% Similarity=0.291 Sum_probs=85.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh-CC-CCCCCeEEEEecCCCC-CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SN-FPKENFLLVRADISRL-PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~g-~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 253 (351)
..++||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+... .+ ...++++++.+|.... .-..++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 367999999999999999998866679999999999999999987532 01 1258999999998764 34467899999
Q ss_pred ecccc-----ccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAI-----HCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl-----~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-..= .++ --..+++.+++.|+|||+++.....
T Consensus 163 ~D~~dp~~~~~~L-~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 163 SDCTDPIGPGESL-FTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp ESCCCCCCTTCCS-SCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EeCCCcCCCchhh-cCHHHHHHHHHHhCCCCEEEEecCC
Confidence 64321 111 1137899999999999999986554
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=88.62 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=73.8
Q ss_pred HHHhccCCCCC--CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-C--CC---CCCeEEEEecC
Q 018740 168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N--FP---KENFLLVRADI 239 (351)
Q Consensus 168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g--~~---~~~i~~~~~d~ 239 (351)
.+.+.+...++ .+|||+|||+|..+..++..+. +|+++|+++.+.+.+++.++... + .. ..+++++++|.
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 44555555556 8999999999999999999875 89999999988777766554220 0 00 14699999998
Q ss_pred CC-CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCc
Q 018740 240 SR-LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279 (351)
Q Consensus 240 ~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG 279 (351)
.+ ++....+||+|++.-.+.+ .....++++..++|++.+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred HHHHHhCcccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 66 3322246999999877755 333355666667776644
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-08 Score=84.95 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=74.5
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeE
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V 252 (351)
....++.+|||+|||+|.++..+++..+...+.|+|++.++....... .. ...++.....+++...+..+.||+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS----LGWNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB----TTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc----CCCCeEEEeccceehhcCCCCccEE
Confidence 445567899999999999999988764445788999885431000000 00 0125556667666566778899999
Q ss_pred EeccccccCCCh----H---HHHHHHHhcccCC-cEEEEEeec
Q 018740 253 HAGAAIHCWSSP----S---TGVAEISRVLRPG-GVFVGTTYI 287 (351)
Q Consensus 253 ~~~~vl~h~~d~----~---~~l~~i~~~Lkpg-G~li~~~~~ 287 (351)
+|..+.+ .... . .+|+.+.++|+|| |.|++-.+.
T Consensus 145 lsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 145 LCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9987655 3322 1 3468888999999 999997765
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=93.50 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCeEEEEcCccCHHHHHHHH----hC---------CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 178 GGNIIDASCGSGLFSRIFAK----SG---------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+..|||||||+|.++....+ .+ ...+|+++|-|+.++...+.+... | ....|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N--g-~~d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR--T-WKRRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH--T-TTTCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc--C-CCCeEEEEeCchhhccc
Confidence 45899999999999643222 22 234899999999777666655442 2 15679999999999865
Q ss_pred C-----CCceeeEEeccccccCCC---hHHHHHHHHhcccCCcEEE
Q 018740 245 A-----SSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 245 ~-----~~~fD~V~~~~vl~h~~d---~~~~l~~i~~~LkpgG~li 282 (351)
+ .+++|+|++-.. -.+.+ -...|..+.+.|||||+++
T Consensus 487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 578999998443 22211 2357788889999999865
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.2e-07 Score=75.35 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=73.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-CCCeEEEEecCCCC-------------
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRL------------- 242 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~-~~~i~~~~~d~~~l------------- 242 (351)
+..+|||+||| +.+..+++. +..+|+.+|.++...+.|+++++.. |.. ..+++++.+|+...
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~-g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN-PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS-CCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 36799999984 666666664 2569999999999999999999886 210 35899999997542
Q ss_pred --C--------C-CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 243 --P--------F-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 243 --p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+ . ..++||+|+.-.-. ....+..+.+.|+|||++++-
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEET
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEe
Confidence 1 1 23789999976531 235566677999999999764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=88.92 Aligned_cols=76 Identities=9% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CC-CCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF-ASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~ 254 (351)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++++.... .+..+++++++|+.+. +. ++++||+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~-~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLL-NEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHS-CTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhc-cCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 378999999999999999998875 99999999999999999987541 0136899999999874 32 2357999998
Q ss_pred c
Q 018740 255 G 255 (351)
Q Consensus 255 ~ 255 (351)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=88.49 Aligned_cols=132 Identities=13% Similarity=0.021 Sum_probs=89.6
Q ss_pred cCCCCCcHHHHHHHHhc----cCC--CCCCeEEEEcCccCHHHHHHHHhCC---CCeEEEEeCCHHHHHHH--HHHHhhh
Q 018740 156 WGGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQC--YEFVQQE 224 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~----l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~~~~a--~~~~~~~ 224 (351)
.+.++.+....+.+... +.. .++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.++..+
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 45577788887777666 332 3577999999999999999988753 35799999999999999 4433221
Q ss_pred C-CCCCCCeEEEEecCCCC-CCCCCceeeEEecccccc-CC---------------------------C-hHHHHHHHHh
Q 018740 225 S-NFPKENFLLVRADISRL-PFASSSIDAVHAGAAIHC-WS---------------------------S-PSTGVAEISR 273 (351)
Q Consensus 225 ~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~---------------------------d-~~~~l~~i~~ 273 (351)
. ..+.....+...|+... +...+.||+|+++=-.-. .. + ...+++.+.+
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~ 453 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTE 453 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHH
T ss_pred hhhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHH
Confidence 0 00112234555565543 234578999999743311 11 1 1246788999
Q ss_pred cccCCcEEEEEeec
Q 018740 274 VLRPGGVFVGTTYI 287 (351)
Q Consensus 274 ~LkpgG~li~~~~~ 287 (351)
.|+|||++.+..|.
T Consensus 454 lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 454 LVQDGTVISAIMPK 467 (878)
T ss_dssp HSCTTCEEEEEEET
T ss_pred hcCCCcEEEEEECh
Confidence 99999999998886
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-07 Score=81.72 Aligned_cols=115 Identities=13% Similarity=0.018 Sum_probs=74.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+....+ ...++.+|||+|||+|.++..+++..+...|+|+|++..+...+... ... ..++.....+.....++
T Consensus 80 ~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~----g~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 80 RWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL----GWNLIRFKDKTDVFNME 153 (282)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCGGGSC
T ss_pred HHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC----CCceEEeeCCcchhhcC
Confidence 3333443 55678899999999999999988765556789999986532211100 000 12333344333333345
Q ss_pred CCceeeEEeccccccCCChH-------HHHHHHHhcccCC--cEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG--GVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~-------~~l~~i~~~Lkpg--G~li~~~~~ 287 (351)
...+|+|+|..+.. ..... .+|.-+.++|+|| |.|++-.+.
T Consensus 154 ~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 78899999987766 43321 3466667899999 999997776
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=79.03 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=92.0
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCC----CCCCeEEEEecCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF----PKENFLLVRADISRLP 243 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~----~~~~i~~~~~d~~~lp 243 (351)
.....+.+.++.+|||+.+|.|.=+..+++.+....++++|+++.-++..++++... +. ...++.+...|...++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~-~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSY-VPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHH-SCTTTTTSSSEEEECCCGGGHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHh-hhhhhccCCceEEEeCchhhcc
Confidence 345567788899999999999999999998877678999999999999999888765 21 1257888888887764
Q ss_pred -CCCCceeeEEe----cc----ccccCCC----------------hHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 -FASSSIDAVHA----GA----AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 -~~~~~fD~V~~----~~----vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
...+.||.|++ ++ ++..-++ ...+|..+.+.|||||+|+.+|-...
T Consensus 218 ~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 218 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 34578999994 32 2211111 13678889999999999999887654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=79.13 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..+|.++||+||++|.++..+.+++. .|++||+.+ |-..... .+++.++++|......+.+.+|+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~~---------~~~V~~~~~d~~~~~~~~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLMD---------TGQVTWLREDGFKFRPTRSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHHT---------TTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhcc---------CCCeEEEeCccccccCCCCCcCEEEE
Confidence 35688999999999999999999975 999999875 2222222 58999999999888777788999999
Q ss_pred ccccccCCChHHHHHHHHhcccCC
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPG 278 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~Lkpg 278 (351)
-.+ .+|...++-+.+.|..+
T Consensus 277 Dm~----~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 277 DMV----EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp CCS----SCHHHHHHHHHHHHHTT
T ss_pred cCC----CChHHhHHHHHHHHhcc
Confidence 665 46777777777776665
|
| >2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-07 Score=62.69 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.9
Q ss_pred ccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
..-+++|+||.|+++|.... ..+.+.|+.|+..|++++|++.++.+.
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE 51 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred HHHHHHhCCCCCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeChhH
Confidence 34578899999999987754 347899999999999999999998763
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-06 Score=75.68 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHhhh
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSEN--------------------------MLKQCYEFVQQE 224 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~--------------------------~~~~a~~~~~~~ 224 (351)
..++.|||+|+..|..+..++... ++.+++++|..+. .++.++++++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999888776542 3568999996421 366788888776
Q ss_pred CCCCCCCeEEEEecCCC-CC-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 225 SNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 225 ~g~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|...++++++.+|+.+ +| .+.++||+|+.-.-.+ ......|+.+...|+|||++++-..
T Consensus 185 -gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 -DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp -TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred -CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4324789999999854 44 3357899999765321 1234779999999999999998543
|
| >2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-07 Score=62.54 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=39.3
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++|+||.|+++|.... ..+.+.|+.|+..|++++|++.++.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGIPYMLENE 49 (68)
T ss_dssp SSSCCCBCSSSCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCTTT
T ss_pred HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence 4578899999999987753 347899999999999999999998753
|
| >2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
Probab=98.19 E-value=5e-07 Score=62.78 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=39.4
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++|+||.|+++|.... ..+.+.|+.|+..|++++|++.++.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQR---------AQAELVCNADRLAFPVRDGVPIMLEAE 49 (70)
T ss_dssp CCCCCCBCTTTCCBEEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred HHhhheECCCCCCcCEEeC---------CCCEEEcCCCCceecCCCCeeeeChhh
Confidence 4578899999999987754 247899999999999999999998763
|
| >2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.6e-07 Score=62.34 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=39.0
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++|+||.|+++|.... ..+.+.|+.|+..|++++|++.++...
T Consensus 4 ~LLeiL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~e 49 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE 49 (69)
T ss_dssp CGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred HHHhheeCCCCCCcCeEeC---------CCCEEEcCCCCcEecCcCCeeeeChhh
Confidence 3467899999999988653 247899999999999999999998753
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-06 Score=74.15 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=66.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+.+.+...+++.+||.+||.|..+..+++. ..+|+|+|.++.+++.+++ +.. .++.++++++.+++
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHH
Confidence 455666777778899999999999999999998 3599999999999999998 532 58999999998874
Q ss_pred ---CCCCceeeEEec
Q 018740 244 ---FASSSIDAVHAG 255 (351)
Q Consensus 244 ---~~~~~fD~V~~~ 255 (351)
...+++|.|++.
T Consensus 82 L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 82 LAALGVERVDGILAD 96 (285)
T ss_dssp HHHTTCSCEEEEEEE
T ss_pred HHHcCCCCcCEEEeC
Confidence 123579999974
|
| >2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-07 Score=62.63 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=39.1
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++|+||.|+++|.... ..+.+.|+.|+..|++++|++.++.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE 49 (68)
T ss_dssp CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence 3467899999999987754 357899999999999999999998753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-05 Score=77.02 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=101.8
Q ss_pred Chhhhhhhhhhhhhh----hcCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-------------CCC
Q 018740 140 PFMSFIYERGWRQNF----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LFS 202 (351)
Q Consensus 140 ~~~~~~~~~~~r~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~ 202 (351)
+..+..|+...++.. ..+.|+.|....+.+.+.+.+.++.+|+|-+||+|.++..+.+.. ...
T Consensus 176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~ 255 (530)
T 3ufb_A 176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES 255 (530)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence 344555665443321 234588999999999999999889999999999999987765431 123
Q ss_pred eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC----CCCceeeEEeccccc---------cCC------C
Q 018740 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAVHAGAAIH---------CWS------S 263 (351)
Q Consensus 203 ~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----~~~~fD~V~~~~vl~---------h~~------d 263 (351)
.++|+|+++.+...|+-++... |. ....+..+|....|. ....||+|+++--+. .++ +
T Consensus 256 ~i~G~E~~~~~~~la~mNl~lh-g~--~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~ 332 (530)
T 3ufb_A 256 SIFGGEAKSLPYLLVQMNLLLH-GL--EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE 332 (530)
T ss_dssp CEEEECCSHHHHHHHHHHHHHH-TC--SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred hhhhhhccHHHHHHHHHHHHhc-CC--ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence 6999999999999999877665 33 334566777655442 235799999874431 111 1
Q ss_pred h-HHHHHHHHhccc-------CCcEEEEEeec
Q 018740 264 P-STGVAEISRVLR-------PGGVFVGTTYI 287 (351)
Q Consensus 264 ~-~~~l~~i~~~Lk-------pgG~li~~~~~ 287 (351)
. ..+++.+.+.|| |||++.+..|.
T Consensus 333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred hHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 1 256777778776 79999998885
|
| >2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=56.58 Aligned_cols=45 Identities=24% Similarity=0.424 Sum_probs=38.5
Q ss_pred ccCCCceeCCCCCCCcccccCCCcccccccCCccccc--cccccccccCceeeecccC
Q 018740 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 121 (351)
..-+++|+||.|+++|.... +.+.|+ .|+..|++++|++.++.+.
T Consensus 5 ~~lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e 51 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE 51 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred HHHHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence 34678899999999987653 789999 9999999999999997653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=9.8e-06 Score=75.23 Aligned_cols=108 Identities=13% Similarity=0.194 Sum_probs=78.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC-----CCCCCeEEEEecCCCC----CCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FPKENFLLVRADISRL----PFASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g-----~~~~~i~~~~~d~~~l----p~~~~ 247 (351)
++++||=||.|.|..++.+.+.. ..+|+.+|+++.+++.+++.+....+ ...++++++.+|.... .-..+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 46799999999999999999865 47999999999999999998643200 0124688999997542 12346
Q ss_pred ceeeEEecccccc-CCCh---------HHHHHHHHhcccCCcEEEEEe
Q 018740 248 SIDAVHAGAAIHC-WSSP---------STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 248 ~fD~V~~~~vl~h-~~d~---------~~~l~~i~~~LkpgG~li~~~ 285 (351)
+||+|+.-..-.. -.+| ..+++.+++.|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7999997422111 1122 367888999999999998754
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.9e-06 Score=72.81 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
..++.+|||+||++|.|+..+++......|.|+|+...+...... ... ...++.....+.....+..+.+|+|+|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeeecCCCCcCEEee
Confidence 346789999999999999999986544578999997542110000 000 011222233322222344678999999
Q ss_pred ccccccCCCh-------HHHHHHHHhcccCC-cEEEEEeec
Q 018740 255 GAAIHCWSSP-------STGVAEISRVLRPG-GVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d~-------~~~l~~i~~~Lkpg-G~li~~~~~ 287 (351)
..+.. ...+ ..+|.-+.++|+|| |.|++-.+.
T Consensus 154 D~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 154 DIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 76655 3332 24466677899999 999998765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=63.08 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCccC-HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+.+... ++.+|||||||.| ..+..|++ .+. .|+++|+++..+ .+++.|+.+..
T Consensus 26 aeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~ 83 (153)
T 2k4m_A 26 AVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPR 83 (153)
T ss_dssp HHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCC
T ss_pred HHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCc
Confidence 344444443 3579999999999 69999987 665 899999998532 17888987743
Q ss_pred CCC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 244 FAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 244 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
..- ..||+|.+..-- ++....+.++++.+ |.-+++.....+
T Consensus 84 ~~~Y~~~DLIYsirPP---~El~~~i~~lA~~v--~adliI~pL~~E 125 (153)
T 2k4m_A 84 MEIYRGAALIYSIRPP---AEIHSSLMRVADAV--GARLIIKPLTGE 125 (153)
T ss_dssp HHHHTTEEEEEEESCC---TTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred ccccCCcCEEEEcCCC---HHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 211 479999875542 34455666666643 557777666554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-05 Score=70.98 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=52.5
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.+..+.+.+..... .++..|||++||+|..+..+++.+. +++|+|+++.+++.|++++...
T Consensus 220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence 35667777776665 4688999999999999999999886 9999999999999999998775
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.8e-05 Score=68.62 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=103.8
Q ss_pred HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC------CC------------CCCC
Q 018740 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF------------PKEN 231 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------g~------------~~~~ 231 (351)
..++...+...|+.+|||.......+...++...++-+|. |+.++.-++.+.... |. ...+
T Consensus 90 ~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (334)
T 1rjd_A 90 LEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGR 168 (334)
T ss_dssp HHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSS
T ss_pred HHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCc
Confidence 3334324467999999999998888887655557777777 777777777665530 00 1368
Q ss_pred eEEEEecCCCCCC---------CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHH
Q 018740 232 FLLVRADISRLPF---------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300 (351)
Q Consensus 232 i~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 300 (351)
..++.+|+.+... ..+...++++-.++.+++.. ..+++.+.+.+ |+|.+++.++.... .+..++...
T Consensus 169 ~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~-~~~~~fg~~ 246 (334)
T 1rjd_A 169 YKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS-QPNDRFGAI 246 (334)
T ss_dssp EEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC-STTCCHHHH
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCC-CCcchHHHH
Confidence 8999999987421 23567899999999999644 47788888776 78877665554321 112233222
Q ss_pred HHHHHhh-----ccCCccCCCHHHHHHHHHHCCCe
Q 018740 301 LRQNMMQ-----ISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 301 ~~~~~~~-----~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
+...+.. ......+.+.++..+.|.++||.
T Consensus 247 m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 247 MQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 2222211 12223567999999999999997
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0001 Score=65.39 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=73.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCCceee
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSIDA 251 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~~fD~ 251 (351)
....++.+|||+||++|.++...+.......|+|+|+...--+.-+ ..++ .....+.+..+ |+..++. ..+|+
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~q---l~w~lV~~~~~~Dv~~l~~--~~~D~ 163 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQS---YGWNIVTMKSGVDVFYRPS--ECCDT 163 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCB---TTGGGEEEECSCCTTSSCC--CCCSE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhh---cCCcceEEEeccCHhhCCC--CCCCE
Confidence 4456778999999999999997776644458999999754100000 0000 01134778877 8877763 66999
Q ss_pred EEeccccccCCChH-------HHHHHHHhcccCC-cEEEEEeec
Q 018740 252 VHAGAAIHCWSSPS-------TGVAEISRVLRPG-GVFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl~h~~d~~-------~~l~~i~~~Lkpg-G~li~~~~~ 287 (351)
|+|.-. +.-++|. .+|+-+.+.|++| |-+.+-...
T Consensus 164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 999777 7777763 3556667889998 888876554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.7e-05 Score=66.36 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe---EEEEe-cCCCCCCCCCce
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF---LLVRA-DISRLPFASSSI 249 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i---~~~~~-d~~~lp~~~~~f 249 (351)
-..++.+|||+||+.|.++..+++.-....|.|.++.... .. . ... ....++ .+.++ |+..++ ...+
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~-~---P~~--~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE-E---PML--MQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC-C---CCC--CCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc-C---CCc--ccCCCceEEEeeccCCccCCC--CCCC
Confidence 4556889999999999999999886211244455544321 00 0 000 000233 44446 987754 4579
Q ss_pred eeEEeccccccCCChH-------HHHHHHHhcccCCc-EEEEEeec
Q 018740 250 DAVHAGAAIHCWSSPS-------TGVAEISRVLRPGG-VFVGTTYI 287 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~-------~~l~~i~~~LkpgG-~li~~~~~ 287 (351)
|+|+|-.+-. ..++. .+|.-+.++|+||| .|++-.+.
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 9999876543 33321 24656668999999 88887766
|
| >2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.2e-06 Score=60.75 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=41.4
Q ss_pred cCCCceeCCCCCCCcccccC------------------CCcccccccCCccccccccccccccCceeeeccc
Q 018740 67 TSKNVLACPICYKPLTWIGD------------------SSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~------------------~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~ 120 (351)
.-+++|+||.|+++|..... .....+++..+.+.|+.|+..|++++|++.++..
T Consensus 4 ~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ 75 (97)
T 2k5r_A 4 KLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE 75 (97)
T ss_dssp TTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred HHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence 45789999999998876431 1112334456789999999999999999999875
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.5e-06 Score=95.19 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCcee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSID 250 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD 250 (351)
+..+|||||.|+|..+..+.+... ..+++..|+|+...+.++++++.. .++....|..+. ++..++||
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----CC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCcee
Confidence 456999999999987655544321 237899999998888887766442 232222243332 33456799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCe
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
+|++.+++|-.++....|++++++|||||.+++............+ . +... .......+.+.++|.++|+.+||.
T Consensus 1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~--~-~~~~--~~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A 1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMV--G-FLTS--PEQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp EEEEECC--------------------CCEEEEEEC-------------------------------CTTTTSSTTTTEE
T ss_pred EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccc--c-cccc--ccccCCcccCHHHHHHHHHhCCCc
Confidence 9999999998889999999999999999999887654221110000 0 0000 000112346777888889999998
Q ss_pred EEEEE
Q 018740 331 DFKCT 335 (351)
Q Consensus 331 ~v~~~ 335 (351)
.+...
T Consensus 1389 ~~~~~ 1393 (2512)
T 2vz8_A 1389 LVALK 1393 (2512)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 87643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00026 Score=60.79 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=72.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCCceeeE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSIDAV 252 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~~fD~V 252 (351)
...++.+|||+||++|.++...+.......|+|+|+-..--+.-+ ..+ ..+...+.|.++ |+..++. .++|.|
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~---s~gwn~v~fk~gvDv~~~~~--~~~Dtl 148 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMS---TYGWNIVKLMSGKDVFYLPP--EKCDTL 148 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCC---CTTTTSEEEECSCCGGGCCC--CCCSEE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhh---hcCcCceEEEeccceeecCC--ccccEE
Confidence 556788999999999999997777654558999999753110000 000 112467899999 9876653 669999
Q ss_pred EeccccccCCChH-------HHHHHHHhcccCCcEEEEEeecc
Q 018740 253 HAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 253 ~~~~vl~h~~d~~-------~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+|.-.= .-++|. .+|+-+.+.|++ |-+.+-....
T Consensus 149 lcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 149 LCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp EECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred EEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 986653 444542 356666788998 7777765543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=66.97 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=66.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp- 243 (351)
.+.+.+.+...+++.++|..||.|..+..+++. ++.++|+|+|.++.+++.++ ++ . ..++.++.+++.++.
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~----~~Rv~lv~~nF~~l~~ 118 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D----DPRFSIIHGPFSALGE 118 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C----CTTEEEEESCGGGHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c----CCcEEEEeCCHHHHHH
Confidence 456677777888999999999999999999987 56789999999999999984 43 2 468999999988763
Q ss_pred -CC----CCceeeEEec
Q 018740 244 -FA----SSSIDAVHAG 255 (351)
Q Consensus 244 -~~----~~~fD~V~~~ 255 (351)
+. .+++|.|++.
T Consensus 119 ~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 119 YVAERDLIGKIDGILLD 135 (347)
T ss_dssp HHHHTTCTTCEEEEEEE
T ss_pred HHHhcCCCCcccEEEEC
Confidence 11 1369999965
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.002 Score=58.59 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=97.9
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---------CCCCce
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------FASSSI 249 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------~~~~~f 249 (351)
..|+++|||-=.....+.. .....++-+| .|..++..++.+.........+..++.+|+.+ . +.....
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 5799999998666554431 2235889999 59999999888875311125678899999976 2 222345
Q ss_pred eeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHH-HHHhhcc-------CCccC-CC-H
Q 018740 250 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMMQIS-------GSYTF-LS-E 317 (351)
Q Consensus 250 D~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~-~s-~ 317 (351)
-++++-.+++++++. ..+++.+...+.||+.+++.....+... .......+. ..+.... ....+ .+ .
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 259 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDE-WREQMQLRFRRVSDALGFEQAVDVQELIYHDENR 259 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSH-HHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcc-hhHHHHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence 678888999999753 4788999998899999998776543210 000111111 2221111 12223 36 7
Q ss_pred HHHHHHHHHCCCeEE
Q 018740 318 REIEDLCRACGLVDF 332 (351)
Q Consensus 318 ~~l~~ll~~aGf~~v 332 (351)
+++.+.|.+.||+.+
T Consensus 260 ~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 260 AVVADWLNRHGWRAT 274 (310)
T ss_dssp CCHHHHHTTTTEEEE
T ss_pred HHHHHHHHHCcCccc
Confidence 899999999999877
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00044 Score=63.92 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHHHHhccCCC------CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE
Q 018740 163 EKEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (351)
Q Consensus 163 ~~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~ 236 (351)
....+.+.+.+... ++..|||||.|.|.++..|.+.....+|+++|+++.++...++.. . .++++++.
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~ 111 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILK 111 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEEC
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEE
Confidence 44556666666543 357899999999999999998732348999999999999998875 2 36899999
Q ss_pred ecCCCC
Q 018740 237 ADISRL 242 (351)
Q Consensus 237 ~d~~~l 242 (351)
+|+.++
T Consensus 112 ~D~l~~ 117 (353)
T 1i4w_A 112 RDPYDW 117 (353)
T ss_dssp SCTTCH
T ss_pred CCccch
Confidence 999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0019 Score=58.21 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=83.2
Q ss_pred CCeEEEEcCccCHHHHHH----HHhCCCCeE--EEEeCCH--------H-HHHHHHHHHhhhC--CCCCCCeEEEEecCC
Q 018740 178 GGNIIDASCGSGLFSRIF----AKSGLFSLV--VALDYSE--------N-MLKQCYEFVQQES--NFPKENFLLVRADIS 240 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l----~~~~~~~~v--~gvD~s~--------~-~~~~a~~~~~~~~--g~~~~~i~~~~~d~~ 240 (351)
.-+|||+|-|+|.+.... .+..+..++ +.+|-.+ . ..+.....+.... ......+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 358999999999865433 233554444 5555311 1 1111221111110 001224566778875
Q ss_pred C-CC-CCCCceeeEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccC
Q 018740 241 R-LP-FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 314 (351)
Q Consensus 241 ~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (351)
+ ++ +.+..+|+|+.-. +---.+| ..+++.++++++|||++. |+.
T Consensus 177 ~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYt--------------------------- 226 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV--SYS--------------------------- 226 (308)
T ss_dssp HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESC---------------------------
T ss_pred HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE--EEe---------------------------
Confidence 4 33 3345799999743 2222344 489999999999999876 332
Q ss_pred CCHHHHHHHHHHCCCeEEEEEec-CeEEEEEEecCC
Q 018740 315 LSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKPS 349 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~~~-g~~~~~~a~kp~ 349 (351)
....++..|+++||.+.+.--. +..-+..|.++.
T Consensus 227 -aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~~ 261 (308)
T 3vyw_A 227 -SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLKA 261 (308)
T ss_dssp -CCHHHHHHHHHTTCEEEEEECC---CEEEEEESSS
T ss_pred -CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecCC
Confidence 2346889999999998876543 345677777653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00084 Score=59.42 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-+..+.+.+..... .++..|||..||+|..+.+..+.+. +++|+|+++.+++.+++++...
T Consensus 196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence 345667777766654 4678999999999999999999886 9999999999999999998654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0047 Score=54.81 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=63.1
Q ss_pred CCCCeEEEEcC------ccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 176 VLGGNIIDASC------GSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 176 ~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
..+.+|||+|+ ..|. ..+.+.++. ..|+++|+.+-. .... .++++|...+.. .++
T Consensus 108 p~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~--------------sda~-~~IqGD~~~~~~-~~k 169 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV--------------SDAD-STLIGDCATVHT-ANK 169 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB--------------CSSS-EEEESCGGGEEE-SSC
T ss_pred cCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc--------------cCCC-eEEEcccccccc-CCC
Confidence 45789999996 5566 345555665 489999997731 0123 459999866543 478
Q ss_pred eeeEEecccc---ccC--CC------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 249 IDAVHAGAAI---HCW--SS------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 249 fD~V~~~~vl---~h~--~d------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
||+|++-.+- -+. .. -+.++.=+.++|+|||.|++-.+..
T Consensus 170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 9999985432 111 11 1355666778999999999976543
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.13 Score=47.04 Aligned_cols=153 Identities=10% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhC------C--------------CCCCCeEEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------N--------------FPKENFLLV 235 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~------g--------------~~~~~i~~~ 235 (351)
+...|+-+|||.=.....+...+ +...++=+|. |+.++.=++.+.... | ....+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 35689999999877777776542 3456777776 555554333333200 0 014678899
Q ss_pred EecCCCC----------CCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHH
Q 018740 236 RADISRL----------PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303 (351)
Q Consensus 236 ~~d~~~l----------p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 303 (351)
.+|+.+. .+.....-++++-.++.+++.. ..+|+.+.+.. |+|.+++.++... ..++.+.+..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p----~d~fg~~M~~ 243 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNM----GDRFGQIMIE 243 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT----TSHHHHHHHH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC----CCHHHHHHHH
Confidence 9999763 1334556688888899998643 47778777766 5566666565532 2344444433
Q ss_pred HHhh----ccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 304 NMMQ----ISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 304 ~~~~----~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.+.. ..+...|.+.++..+.+.++||..+...
T Consensus 244 ~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 244 NLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp HHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence 3322 2223356788999999999999987644
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0036 Score=55.65 Aligned_cols=115 Identities=9% Similarity=-0.009 Sum_probs=84.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L 242 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l 242 (351)
..++.+.. + .+..+||+=+|+|.++..+...+ .+++.+|.++..++..++++.. ..++.++..|... +
T Consensus 82 ~yf~~l~~-~---n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L 150 (283)
T 2oo3_A 82 EYISVIKQ-I---NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKL 150 (283)
T ss_dssp HHHHHHHH-H---SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHH
T ss_pred HHHHHHHH-h---cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHH
Confidence 34455555 2 24578999999999999998855 4999999999999999887654 3679999999643 2
Q ss_pred C---CCCCceeeEEeccccccCCChHHHHHHHHh--cccCCcEEEEEeeccC
Q 018740 243 P---FASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIVD 289 (351)
Q Consensus 243 p---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~~~ 289 (351)
. .+..+||+|++-=-.+.-.+...+++.+.+ .+.|+|++++.-|..+
T Consensus 151 ~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 151 NALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp HHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred HHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 1 234579999986555533345566666665 4569999999888754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.15 Score=46.50 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCC-CeE-EEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCceeeE
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLF-SLV-VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAV 252 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v-~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~fD~V 252 (351)
.-+++|+-||.|.+...+.+.|.. ..+ .++|+++.+++..+.+... . ++.+|+.++.. +...+|++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence 348999999999999999998742 356 6999999999888876422 1 56788877642 22368999
Q ss_pred EeccccccC-----------CChH-HHHHHHHh-cccC---CcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCC
Q 018740 253 HAGAAIHCW-----------SSPS-TGVAEISR-VLRP---GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 253 ~~~~vl~h~-----------~d~~-~~l~~i~~-~Lkp---gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
+...-...+ .|+. .++.++.+ +++. .-.+++.+.... +.. . -.
T Consensus 81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g-------l~~-----------~---~~ 139 (327)
T 3qv2_A 81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL-------FKE-----------S---LV 139 (327)
T ss_dssp EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG-------GGG-----------S---HH
T ss_pred EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh-------hcC-----------h---HH
Confidence 975443333 3554 55666666 5532 123444443321 000 0 12
Q ss_pred HHHHHHHHHHCCCeEEE
Q 018740 317 EREIEDLCRACGLVDFK 333 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~ 333 (351)
.+.+.+.|++.|+.+..
T Consensus 140 ~~~i~~~l~~~GY~v~~ 156 (327)
T 3qv2_A 140 FKEIYNILIKNQYYIKD 156 (327)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 36788889999998755
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.06 Score=47.20 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCeEEEEcCccCHHHHHHHHh-------CCCCeEEEEe-----CCHH-------------------HHHHHHHHHh----
Q 018740 178 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALD-----YSEN-------------------MLKQCYEFVQ---- 222 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD-----~s~~-------------------~~~~a~~~~~---- 222 (351)
++.|+|+|+-.|..+..++.. ++..+++|+| +.+. ..+..++.+.
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 569999999999988776542 3457999999 3221 0111111111
Q ss_pred --hhCCCCCCCeEEEEecCCC-CC-----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 223 --QESNFPKENFLLVRADISR-LP-----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 223 --~~~g~~~~~i~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.. +....++.++.+++.+ +| .+..++|+|+.-.-. -..-...++.+...|+|||++++-+++
T Consensus 150 ~~~~-g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFF-GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTT-TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhc-CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 11 2224789999999865 33 235579999976532 122346789999999999999996654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.11 Score=48.56 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=69.8
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CC------
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP------ 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp------ 243 (351)
..+..++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++. ....+..+-.+ +.
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHH
Confidence 34566788999999876 88888888864223799999999988888763 12222211111 10
Q ss_pred CCCCceeeEEecccc---------ccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 FASSSIDAVHAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl---------~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+-.-.- .|.+++...++...+.|++||.+++..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 012369999965432 133456667899999999999998754
|
| >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0078 Score=38.65 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=24.7
Q ss_pred CceeCCCCCC-CcccccCCCcccccccCCcccccccccccccc
Q 018740 70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 70 ~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
..+.||.|++ +|..+. ..+.+.|..||..|...
T Consensus 4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCCCC
T ss_pred ccEeCcCCCCcceEEcC---------CCCeEECcccCCccccc
Confidence 3578999999 665543 34789999999988643
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.046 Score=51.50 Aligned_cols=67 Identities=7% Similarity=-0.013 Sum_probs=50.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHH-HhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCC-CCeEEEEecCCC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFA-KSGL-FSLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADISR 241 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~-~~i~~~~~d~~~ 241 (351)
..++..++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++...+... .++.++..-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 4678899999999999999887 4543 36999999999999999998876100013 577776655543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.07 Score=49.35 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=66.3
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----CC
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PF 244 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p~ 244 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++. | .. ..+..+-.++ ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l-----G---a~-~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-----G---AT-HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-----T---CS-EEEETTTSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-----C---CC-EEecCCccCHHHHHHHh
Confidence 445667789999999986 88888887763222699999999988888764 1 11 1222111111 01
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+.+|+|+-.-. . ...++...+.|+++|.+++...
T Consensus 255 ~~gg~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 255 TDGGVNFALESTG-----S-PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp TTSCEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECCC
T ss_pred cCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeCC
Confidence 1236999984332 2 3457889999999999987644
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.096 Score=48.97 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=67.8
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p----- 243 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. ....+..+-.++ .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHH
Confidence 345667789999999986 88888888763223899999999988887642 123332211111 0
Q ss_pred C-CCCceeeEEeccccc---------cCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 F-ASSSIDAVHAGAAIH---------CWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ~-~~~~fD~V~~~~vl~---------h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
. ....+|+|+-.-.-. |. ++...++++.+.|+++|++++..
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEEEECCS
T ss_pred HhCCCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCEEEEec
Confidence 0 123699998654322 11 23356889999999999987654
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.058 Score=50.18 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=56.6
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--------CCCcee
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------ASSSID 250 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--------~~~~fD 250 (351)
.+++|+-||.|.++..+.+.|. ..+.++|+++.+++..+.+ .++..++.+|+.++.. ....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N--------~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAIN--------FPRSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHH--------CTTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHh--------CCCCceEecChhhcCHHHHHhhcccCCCee
Confidence 3799999999999999999985 3567999999998888876 4566788899887631 245799
Q ss_pred eEEeccccc
Q 018740 251 AVHAGAAIH 259 (351)
Q Consensus 251 ~V~~~~vl~ 259 (351)
+|+..--.+
T Consensus 74 ~i~ggpPCQ 82 (376)
T 3g7u_A 74 GIIGGPPCQ 82 (376)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999754433
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.66 Score=42.71 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=67.1
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-------
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------- 242 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------- 242 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++.-.+.+++. | .. ..+...-.++
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-----G--a~--~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-----G--AT--ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-----T--CS--EEECTTSSCHHHHHHST
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-----C--CC--EEECCCCcCHHHHHHhh
Confidence 344566788999999875 77888888764323899999999988888774 1 11 1111111110
Q ss_pred -CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
....+.+|+|+-.- .. ...++...+.|++||.+++....
T Consensus 247 ~~~~~gg~Dvvid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 247 VGLVPGGVDVVIECA-----GV-AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp TSSSTTCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred hhccCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEEecc
Confidence 02234799998532 22 34578899999999999886543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.12 Score=47.35 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=64.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+..++.+||-+|+|. |.++..+++.. ..+|+++|.+++-++.+++. | ... .+ .+...+. ..+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-----G--a~~--v~-~~~~~~~---~~~D~ 237 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM-----G--VKH--FY-TDPKQCK---EELDF 237 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT-----T--CSE--EE-SSGGGCC---SCEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc-----C--CCe--ec-CCHHHHh---cCCCE
Confidence 3667789999999876 77888887764 34999999999888888763 1 121 22 3333222 27999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+-.-. .+ ..+....+.|+|+|.+++...
T Consensus 238 vid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 238 IISTIP-----TH-YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp EEECCC-----SC-CCHHHHHTTEEEEEEEEECCC
T ss_pred EEECCC-----cH-HHHHHHHHHHhcCCEEEEECC
Confidence 985332 11 136788899999999988644
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.15 Score=42.45 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=61.5
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
...+..++.+||.+|+ |.|.....+++ .|. +|+++|.+++..+.+++. .... . .|..+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~~--------g~~~-~--~d~~~~~~~~~ 98 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSRL--------GVEY-V--GDSRSVDFADE 98 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHTT--------CCSE-E--EETTCSTHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc--------CCCE-E--eeCCcHHHHHH
Confidence 3445667889999994 45665555544 454 999999998877666531 1111 1 2332211
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+.. ...++...+.|+|+|+++....
T Consensus 99 ~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 99 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred HHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 11246999996542 1457888999999999887654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.057 Score=49.12 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=50.7
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
-+..+.+.+..... .++..|||.-||+|..+.+..+.+. +.+|+|+++..++.+++++...
T Consensus 237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence 34566667666543 4588999999999999999999887 9999999999999999987654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.034 Score=51.13 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred CeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~fD~V~~ 254 (351)
.+|+|+-||.|.+...+...|.. ..|.++|+++.+++..+.++ ++..++.+|+.++.. +...+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence 47999999999999999998731 36899999999999998873 444577889887642 1125899997
Q ss_pred ccc
Q 018740 255 GAA 257 (351)
Q Consensus 255 ~~v 257 (351)
..-
T Consensus 75 gpP 77 (343)
T 1g55_A 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred cCC
Confidence 644
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.093 Score=47.63 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=49.6
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHHhhh
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQE 224 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~---~~~~~a~~~~~~~ 224 (351)
-+..+++.+..... .++..|||.-||+|..+.+..+.+. +.+|+|+++ ..++.+++++...
T Consensus 227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence 45667777776654 4588999999999999999999887 999999999 9999999986544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.26 Score=49.41 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=77.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-------C-----CCeEEEEeC---CHHHHHHHHH-----------HHhhhCCC----
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDY---SENMLKQCYE-----------FVQQESNF---- 227 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~-----------~~~~~~g~---- 227 (351)
.-+|||+|-|+|.+.....+.. | ..+++++|. +.+.+..+-. ....+...
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 4589999999999766554431 1 235899998 7776664332 11111000
Q ss_pred -------CCCCeEEEEecCCC-CC-C--C-CCceeeEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEeeccCCC
Q 018740 228 -------PKENFLLVRADISR-LP-F--A-SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGP 291 (351)
Q Consensus 228 -------~~~~i~~~~~d~~~-lp-~--~-~~~fD~V~~~~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~~~~ 291 (351)
....+++..+|+.+ ++ + . ...||+|+.-.. ---.+| ..+++.+.++++|||.+.- +.
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~---- 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-APAKNPDMWTQNLFNAMARLARPGGTLAT--FT---- 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-CGGGCGGGSCHHHHHHHHHHEEEEEEEEE--SC----
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-CCcCChhhhhHHHHHHHHHHhCCCCEEEe--cc----
Confidence 01234556666643 22 1 1 467999987432 111233 4789999999999998663 11
Q ss_pred CCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 292 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
....+++.|.++||.+.+..
T Consensus 220 ------------------------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 220 ------------------------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp ------------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred ------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12467888899999876644
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.19 Score=50.59 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-------C-----CCeEEEEeC---CHHHHHHHHH-----------HHhhhC----C-
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDY---SENMLKQCYE-----------FVQQES----N- 226 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~-----------~~~~~~----g- 226 (351)
.-+|+|+|-|+|.....+.+.. | ..+++.+|. +.+.+..+-. .+..+. |
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 4589999999999776665531 1 146899998 4444443321 122110 0
Q ss_pred ------CCCCCeEEEEecCCC-CC-CC---CCceeeEEecccc-ccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCC
Q 018740 227 ------FPKENFLLVRADISR-LP-FA---SSSIDAVHAGAAI-HCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF 292 (351)
Q Consensus 227 ------~~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~vl-~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 292 (351)
.+...++++.+|+.+ ++ +. +..+|+++.-..- ..-++ ...++..+.++++|||.+.- +.
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~----- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST--FT----- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE--SC-----
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe--cc-----
Confidence 001256677788743 22 11 4689999974421 11111 15789999999999997653 11
Q ss_pred CcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 293 NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
....+++.|.++||.+.+..
T Consensus 212 -----------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -----------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -----------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred -----------------------CcHHHHHHHHhCCeEEEecc
Confidence 22468888999999877644
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.23 Score=44.98 Aligned_cols=97 Identities=9% Similarity=-0.040 Sum_probs=62.9
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CC----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP---- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp---- 243 (351)
...+..++.+||-.|+ |.|.....+++.. +.+|+++|.+++.++.+++. ... ...|..+ -.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~--------g~~---~~~d~~~~~~~~~~ 206 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI--------GFD---AAFNYKTVNSLEEA 206 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS---EEEETTSCSCHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc--------CCc---EEEecCCHHHHHHH
Confidence 4455667889999998 4576666665542 23999999999888777432 111 1123322 10
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+..- ..++...+.|+++|.+++...
T Consensus 207 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 207 LKKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred HHHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 112469999865441 347888899999999987543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.14 Score=47.33 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=62.9
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe---c-CCCCCCCCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---D-ISRLPFASS 247 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~---d-~~~lp~~~~ 247 (351)
.+..++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++. | .. .++.. + ...+. +
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l-----G--a~--~vi~~~~~~~~~~~~---~ 256 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-----G--AD--EVVNSRNADEMAAHL---K 256 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-----T--CS--EEEETTCHHHHHTTT---T
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-----C--Cc--EEeccccHHHHHHhh---c
Confidence 3566789999999975 77777777753 34899999999988888763 1 11 11211 1 11111 4
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+|+|+..-.-. ..++...+.|+++|.++....
T Consensus 257 g~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 257 SFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp CEEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCCEEEECCCCH------HHHHHHHHHhccCCEEEEecc
Confidence 699998543321 136778899999999887543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.13 Score=46.40 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=61.4
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCce
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
...+..++.+||-+|+|. |.++..+++.. +.+|++++ +++-.+.+++. ....+..|...+ .+.+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~ 200 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKY 200 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCc
Confidence 555667889999999964 77777777763 23999999 98888888764 112222232223 4679
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
|+|+-.-. .+ .+....+.|+++|.++...
T Consensus 201 Dvv~d~~g-----~~--~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 201 FAIFDAVN-----SQ--NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred cEEEECCC-----ch--hHHHHHHHhcCCCEEEEEe
Confidence 99984322 21 2356789999999998763
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.37 Score=44.29 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=66.7
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
...+..++.+||-+|+|. |.++..+++.. +.+|+++|.++.-++.+++. | .. ..+..+-.++.
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-----G---a~-~vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL-----G---AD-HGINRLEEDWVERVYAL 252 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-----T---CS-EEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc-----C---CC-EEEcCCcccHHHHHHHH
Confidence 445667789999999875 77777777763 34999999999888888764 1 11 12221111110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+-.-. ...+....+.|+|+|.+++....
T Consensus 253 ~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 253 TGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp HTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred hCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence 12336999986543 12367788899999999887543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=1.6 Score=43.75 Aligned_cols=155 Identities=10% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHhhhC------------CC---------
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQES------------NF--------- 227 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~------------g~--------- 227 (351)
+...|+-+|||.=.....+....+ ...++=+|. |+.++.=++.+.... ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 356899999998877777765532 234555555 444444444443210 00
Q ss_pred CCCCeEEEEecCCCCC----------C-CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCc
Q 018740 228 PKENFLLVRADISRLP----------F-ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL 294 (351)
Q Consensus 228 ~~~~i~~~~~d~~~lp----------~-~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~ 294 (351)
...+..++.+|+.+.. + .....-++++-.+|.+++.. ..+|+.+.+ + |+|.+++.++.... ...
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~-~~~ 262 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPK-GPF 262 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTT-CTT
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCC-CCC
Confidence 0147889999997741 2 33445677778888988643 477887775 4 67777665544221 122
Q ss_pred chHHHHHHHHHhh----ccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 295 IPFSRLLRQNMMQ----ISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 295 ~~~~~~~~~~~~~----~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
.++.+.+...+.. ......+.+.++..+.+.++||..+...
T Consensus 263 d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~ 307 (695)
T 2zwa_A 263 EPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVG 307 (695)
T ss_dssp SHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEE
T ss_pred ChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCccee
Confidence 3333333333322 2223356789999999999999876543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.26 Score=44.84 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=65.9
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----- 244 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----- 244 (351)
...+..++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++. ... ..+ |..+..+
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~i--~~~~~~~~~~~~ 227 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL--------GAE-VAV--NARDTDPAAWLQ 227 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEE--ETTTSCHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc--------CCC-EEE--eCCCcCHHHHHH
Confidence 334566788999999975 88888888764 34999999999988888763 111 112 2221110
Q ss_pred -CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+.+|+|+.... -...++.+.+.|+|+|.+++...
T Consensus 228 ~~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 228 KEIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp HHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred HhCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 1136888875322 23468889999999999987543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.36 Score=45.10 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=63.9
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------CCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~ 246 (351)
+..++.+||=+|+|. |.++..+++.....+|+++|.++.-++.+++. | .. ..+..+-.++. ...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-----G--a~--~vi~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL-----G--AD--HVIDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-----T--CS--EEECTTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-----C--CC--EEEcCCCCCHHHHHHHHhCC
Confidence 456788999999875 77778887765323899999999998888764 1 11 11211111110 123
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcc----cCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVL----RPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~L----kpgG~li~~~~ 286 (351)
..+|+|+ +....+...+..+.+.| +++|.+++...
T Consensus 281 ~g~D~vi-----d~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 281 LGAKLFL-----EATGVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CCCSEEE-----ECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCCCEEE-----ECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 3699998 34445544556666666 99999988654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.29 Score=44.84 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=65.0
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec---CCC----CC
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISR----LP 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d---~~~----lp 243 (351)
..+..++.+||-+|+|. |.++..+++.....+|+++|.++.-++.+++. | .. ..+..+ ..+ +.
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-----G--a~--~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-----G--AD--LVLQISKESPQEIARKVE 236 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-----T--CS--EEEECSSCCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-----C--CC--EEEcCcccccchHHHHHH
Confidence 34566788999999875 88888888764223899999999888888753 1 11 122211 001 10
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+-.- .. ...+....+.|+|+|.++....
T Consensus 237 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 237 GQLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHhCCCCCEEEECC-----CC-hHHHHHHHHHhcCCCEEEEEec
Confidence 0014699998432 22 2457888899999999987653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.28 Score=44.85 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=66.4
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++. | .. .++..+-.++.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-----G---a~-~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY-----G---AT-DIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH-----T---CC-EEECGGGSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-----C---Cc-eEEcCCCcCHHHHHHHH
Confidence 445667789999999876 77888888764223799999999888888774 1 11 12211111110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+-.-. .+ ..++...+.|+|+|.++....
T Consensus 231 t~g~g~D~v~d~~g-----~~-~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 231 TDGKGVDKVVIAGG-----DV-HTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp TTTCCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECCC
T ss_pred cCCCCCCEEEECCC-----Ch-HHHHHHHHHHhcCCEEEEecc
Confidence 12336999985322 22 357888999999999987643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.38 Score=44.46 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=66.4
Q ss_pred HHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec--CCCC---
Q 018740 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISRL--- 242 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d--~~~l--- 242 (351)
+.......++.+||-+|+|. |.++..+++.....+|+++|.++.-++.+++. | .. ..+... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-----G--a~--~vi~~~~~~~~~~~~ 255 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-----G--VN--EFVNPKDHDKPIQEV 255 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-----T--CC--EEECGGGCSSCHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-----C--Cc--EEEccccCchhHHHH
Confidence 33445667788999999975 77887777764223799999999988888752 1 11 122111 1111
Q ss_pred --CCCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 243 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 243 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
....+.+|+|+-. ...+ ..++...+.|++| |++++...
T Consensus 256 i~~~~~gg~D~vid~-----~g~~-~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 256 IVDLTDGGVDYSFEC-----IGNV-SVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHTTSCBSEEEEC-----SCCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhcCCCCCEEEEC-----CCCH-HHHHHHHHHhhccCCEEEEEcc
Confidence 0123479999843 2233 4578889999997 99887654
|
| >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.058 Score=35.68 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=24.3
Q ss_pred cCCCceeCCCCCC-CcccccCCCcccccccCCcccccccccccc
Q 018740 67 TSKNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 67 ~~~~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..+..+.||.|++ .+..+ ...+.+.|..||.++.
T Consensus 7 ~ll~~~~Cp~C~~~~lv~D---------~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVED---------YRAGDMICPECGLVVG 41 (58)
T ss_dssp CCCSCCSBTTBSSSCCEEC---------SSSCCEECTTTCCEEC
T ss_pred hccccccCcCCCCCceeEe---------CCCCeEEeCCCCCEEe
Confidence 3456678999998 44332 3457899999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.21 Score=45.27 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=65.1
Q ss_pred HHhccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
+....+..++.+||-+|+ |.|..+..+++.. ..+|+++|.+++-++.+.+.+ ... ..+ |..+..
T Consensus 141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~-------g~~-~~~--~~~~~~~~~ 209 (336)
T 4b7c_A 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL-------GFD-GAI--DYKNEDLAA 209 (336)
T ss_dssp HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-------CCS-EEE--ETTTSCHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-------CCC-EEE--ECCCHHHHH
Confidence 335556777899999998 4577777776653 349999999998887773321 111 112 222111
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+-. ...+....+.|+++|.+++...
T Consensus 210 ~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 210 GLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp HHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 11346999985433 1368889999999999987644
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.48 Score=44.03 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=49.4
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCcee
Q 018740 178 GGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD 250 (351)
.-.|+|+|.|.|.+...+.+.. ...+++.||+|+...+.-++.+... .++.+. .++.++|. + .-
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp~--~-~~ 151 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE--G-PA 151 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC--S-SE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcCC--C-Ce
Confidence 4479999999999987776531 2348999999998887666655432 256544 34455541 2 34
Q ss_pred eEEeccccccCC
Q 018740 251 AVHAGAAIHCWS 262 (351)
Q Consensus 251 ~V~~~~vl~h~~ 262 (351)
+|+++.+|.-+|
T Consensus 152 ~viANE~fDAlP 163 (387)
T 1zkd_A 152 VILANEYFDVLP 163 (387)
T ss_dssp EEEEESSGGGSC
T ss_pred EEEeccccccCc
Confidence 666666665543
|
| >3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.022 Score=43.85 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred ccCCccccccccccccccCceeeeccc
Q 018740 94 AAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (351)
Q Consensus 94 ~~~~~~~C~~C~~~~~~~~g~~~~~~~ 120 (351)
+..+.+.|++||+.|++.+|+++.+..
T Consensus 95 V~EG~L~Cp~cgr~ypI~~GIPNm~~~ 121 (125)
T 3q87_A 95 VVEGSLRCDMCGLIYPIKGSIVETVDT 121 (125)
T ss_dssp EEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred EEEEEEECCCCCCEeeccCCcccHHHh
Confidence 567899999999999999999998654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.92 E-value=0.84 Score=41.59 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=64.1
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CCCC------
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP------ 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~lp------ 243 (351)
..+..++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++. | .. ..+..+- .++.
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-----G--a~--~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC-----G--AD--VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----T--CS--EEEECCTTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-----C--CC--EEEcCcccccHHHHHHHH
Confidence 34566788999999875 77777777753 34799999999988888753 1 11 1222110 1110
Q ss_pred CC---CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.. ...+|+|+..-. . ...++...+.|+++|.++....
T Consensus 233 ~~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHHHSSSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred hccccCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 01 246999984332 2 2357888899999999987643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.87 E-value=1.1 Score=40.98 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-----cCC-CC-
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DIS-RL- 242 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-----d~~-~l- 242 (351)
...+..++.+||-+|+|. |.++..+++......|+++|.+++-++.+++. ... -+.+... |+. .+
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~------~~~~~~~~~~~~~~~~~v~ 245 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE------VVTHKVERLSAEESAKKIV 245 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT------CEEEECCSCCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh------cccccccccchHHHHHHHH
Confidence 344566788999999875 77888888764222499999999999999875 211 1222211 110 00
Q ss_pred -CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-.....+|+|+-.- .. ...+....+.|+++|.+++...
T Consensus 246 ~~t~g~g~Dvvid~~-----g~-~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 246 ESFGGIEPAVALECT-----GV-ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HHTSSCCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECCC
T ss_pred HHhCCCCCCEEEECC-----CC-hHHHHHHHHHhcCCCEEEEEcc
Confidence 01234699998532 22 2357888999999999988654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.63 Score=42.77 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCCeEEEEc-Cc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-----CCCCCc
Q 018740 177 LGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFASSS 248 (351)
Q Consensus 177 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-----p~~~~~ 248 (351)
++.+||-+| +| .|.++..+++.....+|+++|.+++-++.+++. | .+ .++ |..+ + ....+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-----G--ad--~vi--~~~~~~~~~v~~~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-----G--AH--HVI--DHSKPLAAEVAALGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-----T--CS--EEE--CTTSCHHHHHHTTCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-----C--CC--EEE--eCCCCHHHHHHHhcCCC
Confidence 678999998 55 488888888862245999999999888888763 1 11 111 1111 1 112357
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|+|+-+-. -...++.+.+.|+++|.+++.
T Consensus 240 ~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 999884322 234678889999999999876
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.39 Score=43.67 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=64.0
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CC--
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LP-- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp-- 243 (351)
...+..++.+||-+|+ |.|..+..+++.. +.+|+++|.++..++.+++.+ ... .. .|..+ +.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~-------g~~-~~--~d~~~~~~~~~~ 217 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF-------GFD-DA--FNYKEESDLTAA 217 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS-------CCS-EE--EETTSCSCSHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-------CCc-eE--EecCCHHHHHHH
Confidence 4456667899999997 4577777776653 249999999998887776421 111 11 13221 10
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+.. . ..++...+.|+++|.+++...
T Consensus 218 ~~~~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 218 LKRCFPNGIDIYFENVG-----G--KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp HHHHCTTCEEEEEESSC-----H--HHHHHHHTTEEEEEEEEECCC
T ss_pred HHHHhCCCCcEEEECCC-----H--HHHHHHHHHHhcCCEEEEEcc
Confidence 11246999986543 1 368888999999999987643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=92.61 E-value=0.31 Score=44.32 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEecc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 256 (351)
+.+++|+.||.|.+...+...|. ..+.++|+++.+++..+.+.... . .+|+.++... -..+|+|+...
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~-----~-----~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK-----P-----EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC-----C-----BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC-----C-----cCCHHHcCHhhCCCCCEEEECC
Confidence 46899999999999999999885 35788999999999988875432 1 5777665321 13589999764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.65 Score=42.75 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=64.8
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL----- 242 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l----- 242 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++.-++.+++. | .. ..+..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-----G--a~--~vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-----G--AT--ECLNPKDYDKPIYEVIC 255 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-----T--CS--EEECGGGCSSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-----C--Cc--EEEecccccchHHHHHH
Confidence 445566788999999875 77777777763223799999999888888753 1 11 1121110 111
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
....+.+|+|+-.- .. ...++...+.|+++ |.+++...
T Consensus 256 ~~t~gg~Dvvid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 256 EKTNGGVDYAVECA-----GR-IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHhCCCCCEEEECC-----CC-HHHHHHHHHHHhcCCCEEEEEcc
Confidence 01123699998432 22 34578889999999 99887543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.36 Score=43.85 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=64.0
Q ss_pred HHhccCCCCCCeEEEEcCc--cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
+.......++.+||-+|+| .|..+..+++.. +.+|+++|.++..++.+++. .... .+...-.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------ga~~-~~~~~~~~~~~~~ 205 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL--------GAAY-VIDTSTAPLYETV 205 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCSE-EEETTTSCHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC--------CCcE-EEeCCcccHHHHH
Confidence 3345567788999999987 577777766642 23999999999888888764 1111 1211111110
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+.+-.- + .+.+..+.|+++|.++.....
T Consensus 206 ~~~~~~~g~Dvvid~~g~-----~--~~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 206 MELTNGIGADAAIDSIGG-----P--DGNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp HHHTTTSCEEEEEESSCH-----H--HHHHHHHTEEEEEEEEECCCT
T ss_pred HHHhCCCCCcEEEECCCC-----h--hHHHHHHHhcCCCEEEEEeec
Confidence 123479999854331 1 234455899999999886543
|
| >3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.046 Score=34.92 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=21.4
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.--||.||+...... ....+.|+.||..+-
T Consensus 19 ~k~CP~CG~~~fm~~---------~~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD---------HGDRWACGKCGYTEW 48 (50)
T ss_dssp SEECSSSCSSCEEEE---------CSSEEECSSSCCEEE
T ss_pred cccCCCCCCceEEec---------CCCeEECCCCCCEEE
Confidence 456999999755432 136889999997653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.66 Score=41.92 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=64.2
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-+|+ |.|..+..+++.. +.+|+++|.+++-++.+++. ... ..+..+-.++.
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~~~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY--------GAE-YLINASKEDILRQVLK 211 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHH
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCc-EEEeCCCchHHHHHHH
Confidence 3345677899999994 3477777777653 34999999999888877663 111 12221111110
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+-.- ..++...+.|+++|.++....
T Consensus 212 ~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 212 FTNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp HTTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 113469999865432 347788899999999988643
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.21 Score=44.69 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=54.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC----CCceee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA----SSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~----~~~fD~ 251 (351)
...+++|+-||.|.+...+.+.|.... |.++|+++.+++..+.+ .+...++.+|+.++... .+.+|+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N--------~~~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR--------HQGKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH--------TTTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh--------CCCCceeCCChHHccHHHhcccCCcCE
Confidence 355899999999999999999886433 68999999988877665 34556788999876421 136899
Q ss_pred EEec
Q 018740 252 VHAG 255 (351)
Q Consensus 252 V~~~ 255 (351)
++..
T Consensus 87 l~gg 90 (295)
T 2qrv_A 87 VIGG 90 (295)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9965
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.84 Score=41.97 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=64.8
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CC--
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LP-- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp-- 243 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++. | .. ..+ |..+ +.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-----G--a~--~vi--~~~~~~~~~~~~ 254 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-----G--AT--DFV--NPNDHSEPISQV 254 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-----T--CC--EEE--CGGGCSSCHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-----C--Cc--eEE--eccccchhHHHH
Confidence 444566788999999875 77777787764223799999999988888753 1 11 112 2211 10
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
...+.+|+|+-.-. . ...++...+.|+++ |.+++...
T Consensus 255 ~~~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 255 LSKMTNGGVDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHHHTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHhCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence 11236999984322 2 34578889999999 99887543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.44 E-value=0.86 Score=41.93 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=64.6
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL----- 242 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l----- 242 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. | .. ..+..+- .++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-----G--a~--~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-----G--AT--ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-----T--CS--EEECGGGCSSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-----C--Cc--eEecccccchhHHHHHH
Confidence 445566788999999875 77777777764223799999999888888653 1 11 1121110 111
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
....+.+|+|+-.- .. ...++...+.|+++ |.+++...
T Consensus 256 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 256 EMSNGGVDFSFEVI-----GR-LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp HHTTSCBSEEEECS-----CC-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred HHhCCCCcEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEecc
Confidence 01123699998432 22 24578889999999 99887543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.89 Score=41.83 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=64.9
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CC--
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LP-- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp-- 243 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++. | .. ..+ |..+ +.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-----G--a~--~vi--~~~~~~~~~~~~ 257 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-----G--AT--DCL--NPRELDKPVQDV 257 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-----T--CS--EEE--CGGGCSSCHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-----C--Cc--EEE--ccccccchHHHH
Confidence 445566788999999875 77888888764223799999999888888753 1 11 111 2211 10
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
...+.+|+|+-. ... ...++...+.|+++ |.+++...
T Consensus 258 v~~~~~~g~Dvvid~-----~G~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 258 ITELTAGGVDYSLDC-----AGT-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHHHTSCBSEEEES-----SCC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHHHhCCCccEEEEC-----CCC-HHHHHHHHHHhhcCCCEEEEECC
Confidence 112369999843 222 34578889999999 99887543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.75 Score=42.26 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=64.7
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL----- 242 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l----- 242 (351)
...+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++. | .. ..+..+- .++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-----G--a~--~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-----G--AT--ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-----T--CS--EEECGGGCSSCHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-----C--Cc--eEeccccccccHHHHHH
Confidence 445566788999999875 77777777763222799999999988888764 1 11 1121110 111
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
....+.+|+|+-.- .. ...++...+.|+++ |.+++...
T Consensus 255 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 255 EMTDGGVDYSFECI-----GN-VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHhCCCCCEEEECC-----Cc-HHHHHHHHHhhccCCcEEEEEec
Confidence 01123699998432 22 34578889999999 99887543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.36 Score=43.98 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC---CCC-----
Q 018740 174 KPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RLP----- 243 (351)
Q Consensus 174 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~---~lp----- 243 (351)
+..++.+||-+|+ |.|..+..+++.. ..+|+++|.++..++.+++. ... .. .|.. ++.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~--------g~~-~~--~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI--------GGE-VF--IDFTKEKDIVGAVLK 233 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT--------TCC-EE--EETTTCSCHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc--------CCc-eE--EecCccHhHHHHHHH
Confidence 5667889999998 4577666666642 23999999998877776652 111 11 2432 110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+.. ....++.+.+.|+++|.++....
T Consensus 234 ~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 234 ATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred HhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 01126999986543 13468889999999999887543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.42 Score=43.51 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=64.1
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
......++.+||-+|+ |.|..+..+++.. +.+|++++.+++-++.+++. ... ..+..+ .++.
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~v~~~~-~~~~~~v~~ 221 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV--------GAD-IVLPLE-EGWAKAVRE 221 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------TCS-EEEESS-TTHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCc-EEecCc-hhHHHHHHH
Confidence 4456677899999997 4577777777763 34999999999888888764 111 122222 2211
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+.+-.- ..+....+.|+++|.+++..
T Consensus 222 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 222 ATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp HTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred HhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 122369999865432 14778889999999998754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.71 Score=41.92 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C-CC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-AS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~-~~ 246 (351)
...++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++. | .. ..+..+ .++. . ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-----G--a~--~~i~~~-~~~~~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-----G--AD--AAVKSG-AGAADAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-----T--CS--EEEECS-TTHHHHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-----C--CC--EEEcCC-CcHHHHHHHHhCC
Confidence 456688999999876 78888887753245999999999988888763 1 11 122211 1110 0 12
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+-. ... ...++...+.|+++|.+++...
T Consensus 238 ~g~d~v~d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 238 QGATAVFDF-----VGA-QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GCEEEEEES-----SCC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCeEEEEC-----CCC-HHHHHHHHHHHhcCCEEEEECC
Confidence 369998843 222 2368889999999999988654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.29 Score=43.79 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=39.7
Q ss_pred CCeEEEEecCCC-CC-CCCCceeeEEeccccccC--------------------CChHHHHHHHHhcccCCcEEEEEee
Q 018740 230 ENFLLVRADISR-LP-FASSSIDAVHAGAAIHCW--------------------SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 230 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~--------------------~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.++.++++|..+ ++ +++++||+|+++--.... ......++++.++|+|||.+++...
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 457889999866 22 457899999986433211 0123567899999999999988654
|
| >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.052 Score=39.31 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=22.9
Q ss_pred ccccCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 64 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
++++..+...||.|+.++.+.+ +.+.|..|+..|..
T Consensus 25 ~~~~~~M~~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~ 60 (101)
T 2jne_A 25 VPRGSHMELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM 60 (101)
T ss_dssp ------CCCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred ccCcccccccCccCCCcceecC-----------CEEECccccchhhc
Confidence 3455556689999999998765 56668888765543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.56 Score=42.24 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=64.8
Q ss_pred hccCCCCCCeEEEEc-C-ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDAS-C-GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiG-c-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-+| + |.|..+..+++.. +.+|+++|.+++-++.+++. ... ..+..+-.++.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL--------GAW-ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCC-EEEeCCCccHHHHHHH
Confidence 344567789999999 3 3577777776652 23999999999988888763 111 12211111110
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+.+-.- ..+....+.|+++|.+++....
T Consensus 204 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 204 LTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp HTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 123469999864432 3477888999999999886543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.21 Score=45.64 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=78.6
Q ss_pred CeEEEEcCccCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~fD~V~~ 254 (351)
-+++|+-||.|.+...+.+.|.. ..+.++|+++.+.+.-+.++ +...++.+|+.++.. +...+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEEe
Confidence 37999999999999999988742 35789999999888887763 444567788877642 2235899996
Q ss_pred cccccc---------CCChH-HHHHHHHh---ccc-CCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 255 GAAIHC---------WSSPS-TGVAEISR---VLR-PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 255 ~~vl~h---------~~d~~-~~l~~i~~---~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
..-... ..|+. .++.++.+ .++ | .+++.+.... ... . -..+.+
T Consensus 76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~g----l~~--------------~---~~~~~i 132 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKG----FEN--------------S---TVRNLF 132 (333)
T ss_dssp CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTT----GGG--------------S---HHHHHH
T ss_pred cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchh----hhh--------------h---hHHHHH
Confidence 533222 23333 23344444 444 5 3444443321 000 0 013578
Q ss_pred HHHHHHCCCeEEE
Q 018740 321 EDLCRACGLVDFK 333 (351)
Q Consensus 321 ~~ll~~aGf~~v~ 333 (351)
.+.|++.|+.+..
T Consensus 133 ~~~l~~~GY~v~~ 145 (333)
T 4h0n_A 133 IDKLKECNFIYQE 145 (333)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 8889999998755
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.99 Score=41.19 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=62.4
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. ... .. .|..+..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~--~d~~~~~~~~~~ 231 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN--------GAH-EV--FNHREVNYIDKI 231 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EE--EETTSTTHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc--------CCC-EE--EeCCCchHHHHH
Confidence 3445667889999997 4577666666543 34999999999888776542 111 11 2322211
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+.+..- ..+....+.|+++|.+++..
T Consensus 232 ~~~~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 232 KKYVGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHHHCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred HHHcCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence 112369999865431 35778889999999988754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.41 Score=43.62 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=62.0
Q ss_pred cCCCCCCeEEEEcCc--cCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 173 LKPVLGGNIIDASCG--SGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG--~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
.+..++.+||-+|+| .|..+..+++. +. +|+++|.+++.++.+++. .... .+ |..+..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~~--------g~~~-~~--~~~~~~~~~~~ 232 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRA--------GADY-VI--NASMQDPLAEI 232 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHH--------TCSE-EE--ETTTSCHHHHH
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHh--------CCCE-Ee--cCCCccHHHHH
Confidence 456678899999997 45555555544 54 899999999888887653 1111 11 222111
Q ss_pred --CCC-CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 --FAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 --~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
... +.+|+|+.+.. . ...++...+.|+++|.++....
T Consensus 233 ~~~~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 233 RRITESKGVDAVIDLNN-----S-EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp HHHTTTSCEEEEEESCC-----C-HHHHTTGGGGEEEEEEEEECCS
T ss_pred HHHhcCCCceEEEECCC-----C-HHHHHHHHHHHhcCCEEEEECC
Confidence 112 47999985433 1 3457888899999999887543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.62 E-value=1 Score=40.93 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=63.2
Q ss_pred cCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-------
Q 018740 173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------- 243 (351)
.+..++.+||-+|+ |.|..+..+++.. ..+|+++|.+++.++.+++. | .. .. .|..+..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-----g--a~--~~--~d~~~~~~~~~~~~ 229 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL-----G--AD--ET--VNYTHPDWPKEVRR 229 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-----T--CS--EE--EETTSTTHHHHHHH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-----C--CC--EE--EcCCcccHHHHHHH
Confidence 35567889999998 4677777776653 34999999999888888653 1 11 11 2332211
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+.. . ..++.+.+.|+++|.++....
T Consensus 230 ~~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 230 LTGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp HTTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred HhCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 11246999986544 2 246778899999999887544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.99 Score=41.37 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=64.7
Q ss_pred hccCCCCCCeEEEEc--CccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDAS--CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-+| .|.|..+..+++.. +.+|+++|.+++.++.+++. ... ..+..+-.++.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL--------GCD-RPINYKTEPVGTVLKQ 226 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc--------CCc-EEEecCChhHHHHHHH
Confidence 334566788999999 34588777777653 34999999998888877752 111 11211111110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+.+-. . ..++.+.+.|+++|.++.....
T Consensus 227 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~~ 263 (362)
T 2c0c_A 227 EYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGFI 263 (362)
T ss_dssp HCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCCG
T ss_pred hcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeCC
Confidence 11246999985433 2 4678889999999998876543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.27 E-value=0.29 Score=44.94 Aligned_cols=98 Identities=10% Similarity=0.110 Sum_probs=61.5
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC-CC--CCCCCc
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RL--PFASSS 248 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~-~l--p~~~~~ 248 (351)
.+..++.+||-+|+|. |.++..+++.. ..+|+++|.++.-++.+++. | .. .++..+-. ++ ... +.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l-----G--a~--~v~~~~~~~~~~~~~~-~~ 243 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-----G--AD--HYIATLEEGDWGEKYF-DT 243 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-----T--CS--EEEEGGGTSCHHHHSC-SC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-----C--CC--EEEcCcCchHHHHHhh-cC
Confidence 4566789999999864 77777777652 23899999999888888763 1 11 12221111 11 011 46
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+|+|+..-.-. ....++...+.|+++|.++...
T Consensus 244 ~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 244 FDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred CCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence 99998654320 0122556778999999988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.91 Score=41.48 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=59.0
Q ss_pred CeEEEEcCcc-CHHH-HHHH-HhCCCCe-EEEEeCCHH---HHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-----C
Q 018740 179 GNIIDASCGS-GLFS-RIFA-KSGLFSL-VVALDYSEN---MLKQCYEFVQQESNFPKENFLLVRADISRLPFA-----S 246 (351)
Q Consensus 179 ~~vLDiGcG~-G~~~-~~l~-~~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-----~ 246 (351)
.+||-+|+|. |.++ ..++ +.. ..+ |+++|.+++ -++.+++. ....+ |..+..+. .
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~~~~~~~~i~~~~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DSRQTPVEDVPDVY 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ETTTSCGGGHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CCCccCHHHHHHhC
Confidence 8999999864 7777 7777 543 335 999999987 77877652 12222 33221110 2
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+.+|+|+-. ...+ ..++.+.+.|+++|.++.....
T Consensus 241 gg~Dvvid~-----~g~~-~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 241 EQMDFIYEA-----TGFP-KHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp CCEEEEEEC-----SCCH-HHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEeCC
Confidence 368998843 2222 3578889999999998876543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.24 E-value=0.97 Score=40.95 Aligned_cols=95 Identities=21% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC------C
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------S 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~------~ 246 (351)
+..++.+||-+|+|. |..+..+++.. ..+|+++|.++..++.+++. | .. . ..|..+..+. .
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-----G--a~--~--~~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL-----G--AD--L--VVNPLKEDAAKFMKEKV 228 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-----T--CS--E--EECTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC-----C--CC--E--EecCCCccHHHHHHHHh
Confidence 556788999999864 77777776653 34999999999888887652 1 11 1 1233221100 0
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+.... . ...++...+.|+++|.++....
T Consensus 229 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 229 GGVHAAVVTAV-----S-KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp SSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 46899885432 2 2457888999999999887543
|
| >2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.032 Score=38.79 Aligned_cols=16 Identities=44% Similarity=1.159 Sum_probs=11.2
Q ss_pred CCceeCCCCCCCcccc
Q 018740 69 KNVLACPICYKPLTWI 84 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~ 84 (351)
-++..||+||.+|.+.
T Consensus 6 ~~~~~~PlCG~~L~W~ 21 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWE 21 (95)
T ss_dssp --CEECSSSCCEECHH
T ss_pred cccccCCcCCCccCHH
Confidence 3567899999976544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.98 E-value=2 Score=38.78 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=64.6
Q ss_pred HhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
.......++.+||=.|+|. |.++..+++......++++|.++.-++.+++. .-...+..+-.+.+
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQSV 223 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHHh
Confidence 3344566788999999875 66666676664334678999999988888763 11122221111110
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+..- .. ...++...+.|++||.+++....
T Consensus 224 ~~~~~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 224 LRELRFNQLILETA-----GV-PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp HGGGCSSEEEEECS-----CS-HHHHHHHHHHCCTTCEEEECCCC
T ss_pred hcccCCcccccccc-----cc-cchhhhhhheecCCeEEEEEecc
Confidence 1124578877432 22 34578888999999999876543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.64 Score=41.76 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=59.8
Q ss_pred eEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEecc
Q 018740 180 NIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA 256 (351)
Q Consensus 180 ~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~ 256 (351)
+||=+|+ |.|.++..+++.. ..+|+++|.+++-.+.+++. | ...-+-..+.... ....+.+|+|+-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l-----G---a~~vi~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL-----G---ANRILSRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH-----T---CSEEEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-----C---CCEEEecCCHHHHHhhcCCCccEEEEC-
Confidence 4999997 4588888888764 34999999999988888764 1 1111111111111 1224579988743
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
... ..+....+.|+++|.++....
T Consensus 219 ----~g~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 219 ----VGD--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp ----SCH--HHHHHHHHTEEEEEEEEECCC
T ss_pred ----CCc--HHHHHHHHHHhcCCEEEEEec
Confidence 322 278899999999999987643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.92 E-value=2.9 Score=32.31 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=59.6
Q ss_pred CCeEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceee
Q 018740 178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 251 (351)
Q Consensus 178 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~ 251 (351)
..+|+=+|+|. |. +...|.+.+. .|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence 35899999975 54 3444555565 99999999998887765 35677888886532 11246788
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEee
Q 018740 252 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+.. +++.. ..+....+.+.|+..++....
T Consensus 75 vi~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 75 LILT-----IPNGYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp EEEC-----CSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred EEEE-----CCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 8753 23332 224445667778887776443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=1.7 Score=39.34 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-----C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-----p-~~ 245 (351)
....++.+||=+|+|. |.+...+++.....+|+++|.+++-++.+++. ... ..+...-.+. . ..
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~--------Ga~-~~i~~~~~~~~~~v~~~t~ 229 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI--------GAD-VTINSGDVNPVDEIKKITG 229 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT--------TCS-EEEEC-CCCHHHHHHHHTT
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc--------CCe-EEEeCCCCCHHHHhhhhcC
Confidence 3556788999999986 44555555543346999999999888877763 111 1221111111 0 12
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
...+|.++.... -...+....+.|+++|.+++..
T Consensus 230 g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 230 GLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp SSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence 234666664322 2355788889999999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.61 Score=42.00 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=62.2
Q ss_pred ccCCCCCCeEEEEcC--ccCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
..+..++.+||-.|+ |.|.....+++ .|. +|+++|.+++.++.+++. .... . .|..+..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~ 201 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA--------GAWQ-V--INYREEDLVERL 201 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH--------TCSE-E--EETTTSCHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc--------CCCE-E--EECCCccHHHHH
Confidence 445667889999994 45666665555 454 999999999888877653 1111 1 2322211
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+.. ...++.+.+.|+++|.++....
T Consensus 202 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 202 KEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred HHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 11236999986544 2347888899999999887654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.81 Score=42.28 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=64.0
Q ss_pred ccC-CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec------C-CCC
Q 018740 172 YLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD------I-SRL 242 (351)
Q Consensus 172 ~l~-~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d------~-~~l 242 (351)
..+ ..++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++. | .. .++..+ + +.+
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-----G--a~--~vi~~~~~~~~~~~~~v 259 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-----G--AD--LTLNRRETSVEERRKAI 259 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-----T--CS--EEEETTTSCHHHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-----C--Cc--EEEeccccCcchHHHHH
Confidence 345 66788999999764 77777777764214999999999988888752 1 11 122211 0 001
Q ss_pred -CC-CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -PF-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -p~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.. ....+|+|+-.-. .+ ..++...+.|+++|.++....
T Consensus 260 ~~~~~g~g~Dvvid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 260 MDITHGRGADFILEATG-----DS-RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHHTTTSCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECCC
T ss_pred HHHhCCCCCcEEEECCC-----CH-HHHHHHHHHHhcCCEEEEEec
Confidence 01 1236999985432 11 347788899999999887543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=1.3 Score=40.21 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=63.8
Q ss_pred hccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+. ++.+||-+|+|. |..+..+++.. .. +|+++|.+++.++.+++. | .. ..+ |..+..
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~-----G--a~--~~~--~~~~~~~~~~v 228 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKV-----G--AD--YVI--NPFEEDVVKEV 228 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHH-----T--CS--EEE--CTTTSCHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----C--CC--EEE--CCCCcCHHHHH
Confidence 33455 788999999864 77777777764 34 899999999888888753 1 11 111 221111
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+..-. . ...++.+.+.|+++|.++....
T Consensus 229 ~~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 229 MDITDGNGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp HHHTTTSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred HHHcCCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 11236999985432 2 3457888999999999887644
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=1.5 Score=39.84 Aligned_cols=98 Identities=5% Similarity=-0.061 Sum_probs=63.4
Q ss_pred hccCCCCC--CeEEEEcC--ccCHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 171 GYLKPVLG--GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 171 ~~l~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
...+..++ .+||-.|+ |.|.....+++.. +. +|+++|.+++.++.+++.+ | .. ...|..+..
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~----g---~~---~~~d~~~~~~~ 220 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSEL----G---FD---AAINYKKDNVA 220 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS----C---CS---EEEETTTSCHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHc----C---Cc---eEEecCchHHH
Confidence 44456678 89999997 4466666666654 34 8999999987777766521 1 11 112332211
Q ss_pred -----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+.. ...++...+.|+++|.+++...
T Consensus 221 ~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 221 EQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 11126999986544 2568888999999999987644
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.74 E-value=1.4 Score=41.85 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=63.0
Q ss_pred cCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-------
Q 018740 173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------- 243 (351)
....++.+||=+|+ | .|.++..+++.. ..++++++.++.-++.+++. | .. .++...-.++.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l-----G--a~--~vi~~~~~d~~~~~~~~~ 293 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM-----G--AE--AIIDRNAEGYRFWKDENT 293 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-----T--CC--EEEETTTTTCCSEEETTE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh-----C--Cc--EEEecCcCcccccccccc
Confidence 45667889999997 4 477777777764 34899999999888888764 1 11 11211111110
Q ss_pred ----------------CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 ----------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ----------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+-+-. . ..+....+.|+++|.+++..
T Consensus 294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 294 QDPKEWKRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp ECHHHHHHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEESC
T ss_pred cchHHHHHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEEe
Confidence 01247999985322 2 46788889999999998754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=1.3 Score=40.48 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=62.4
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. .... . .|..+..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~ 223 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL--------GAAA-G--FNYKKEDFSEAT 223 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH--------TCSE-E--EETTTSCHHHHH
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CCcE-E--EecCChHHHHHH
Confidence 3445667889999984 4577666666553 34999999999888887543 1111 1 2222211
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+..- + .+....+.|+++|.+++...
T Consensus 224 ~~~~~~~~~d~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 224 LKFTKGAGVNLILDCIGG-----S--YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp HHHTTTSCEEEEEESSCG-----G--GHHHHHHHEEEEEEEEECCC
T ss_pred HHHhcCCCceEEEECCCc-----h--HHHHHHHhccCCCEEEEEec
Confidence 112469999865432 2 46778899999999887654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.58 E-value=1 Score=41.06 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=63.6
Q ss_pred hccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
...+..++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++. ... ..+..+-.++.
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL--------GAK-RGINYRSEDFAAVIKA 230 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCC-EEEeCCchHHHHHHHH
Confidence 4455667889999953 3577777777653 34999999999988888764 111 11211111110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+.+-.- ..+....+.|+++|.+++...
T Consensus 231 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 231 ETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp HHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 013469999865432 247778899999999887653
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.59 Score=44.02 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh----CC-CCeEEEEeCCHHHHHHHHHHHhh
Q 018740 178 GGNIIDASCGSGLFSRIFAKS----GL-FSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----~~-~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
...|+|+|.|+|.+...+.+. .+ ..+++.||+|+.+.+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 359999999999987776543 21 24799999999988888877764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.41 E-value=2.2 Score=38.64 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCeEEEEc-Cc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C-----CCCCCc
Q 018740 177 LGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFASSS 248 (351)
Q Consensus 177 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l-----p~~~~~ 248 (351)
++.+||-+| +| .|.++..+++.. ..+|+++|.+++-++.+++. | ... .+ |..+ + ......
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-----G--a~~--vi--~~~~~~~~~~~~~~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM-----G--ADI--VL--NHKESLLNQFKTQGIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH-----T--CSE--EE--CTTSCHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-----C--CcE--EE--ECCccHHHHHHHhCCCC
Confidence 688999994 54 477777777753 34999999999988888774 1 111 11 1111 1 012346
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
+|+|+.+.. -...+..+.+.|+++|.++..
T Consensus 218 ~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 218 VDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred ccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 999985322 234578888999999999764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.40 E-value=3.2 Score=38.22 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=71.3
Q ss_pred HHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+++.+.. ..+++||.++.+.|.++..++... ++.+.-|--.....+.++..+ +....++.+.. ....+
T Consensus 27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~-~~~~~~~~~~~-~~~~~--- 97 (375)
T 4dcm_A 27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLN-GIDESSVKFLD-STADY--- 97 (375)
T ss_dssp HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHT-TCCGGGSEEEE-TTSCC---
T ss_pred HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHc-CCCccceEecc-ccccc---
Confidence 445555432 245689999999999998887653 355543555555566677665 33233455543 23333
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
.+.||+|+.... .+.......|..+...|+||+.+++...+..
T Consensus 98 ~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~ 140 (375)
T 4dcm_A 98 PQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARD 140 (375)
T ss_dssp CSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGG
T ss_pred ccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecccc
Confidence 356999885322 2222334668889999999999988776654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.38 E-value=1.3 Score=40.00 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=62.5
Q ss_pred ccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
..+..++.+||-.|+ |.|.....+++.. +.+|+++|.+++.++.+++. .... . .|..+..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~--------g~~~-~--~d~~~~~~~~~i~ 207 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL--------GCHH-T--INYSTQDFAEVVR 207 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCSE-E--EETTTSCHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCCE-E--EECCCHHHHHHHH
Confidence 445667889999995 5577666666543 24999999999888877653 1111 1 2332211
Q ss_pred --CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+|+.+..- ..++...+.|+++|.++....
T Consensus 208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 208 EITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred HHhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 112369999865432 347788899999999887654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.68 Score=42.06 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=62.4
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE----ecC-CCCCCCC
Q 018740 174 KPVLGGNIIDASCGS-GLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR----ADI-SRLPFAS 246 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~----~d~-~~lp~~~ 246 (351)
+. ++.+||-+|+|. |.++..+++.. ++.+|+++|.+++-++.+++. | ... ++. .|. ..+. ..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-----G--a~~--vi~~~~~~~~~~~~~-~g 236 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-----G--ADY--VSEMKDAESLINKLT-DG 236 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-----T--CSE--EECHHHHHHHHHHHH-TT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-----C--CCE--EeccccchHHHHHhh-cC
Confidence 45 788999999975 77777776652 134899999999988888763 1 111 111 111 1111 12
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+|+|+-.-. . ...++.+.+.|+|+|.++....
T Consensus 237 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 237 LGASIAIDLVG-----T-EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp CCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCccEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence 36999985432 2 2357888999999999887544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.20 E-value=3.1 Score=33.67 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=56.7
Q ss_pred CCeEEEEcCcc-CH-HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----C-CCCce
Q 018740 178 GGNIIDASCGS-GL-FSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----F-ASSSI 249 (351)
Q Consensus 178 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~-~~~~f 249 (351)
+.+|+=+|+|. |. ++..|.+. +. +|+++|.+++.++.+++ ..+..+.+|..+.. . .-..+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence 55899999875 44 34555555 65 89999999987776654 23456677765421 1 13458
Q ss_pred eeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEee
Q 018740 250 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+|+..- ++.. ..+....+.+.|++.++....
T Consensus 107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 8888632 2332 223345566677777776543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.12 E-value=1.4 Score=39.40 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=59.3
Q ss_pred hccCCCCCCeEEEEc-Cc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCC
Q 018740 171 GYLKPVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS 247 (351)
Q Consensus 171 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~ 247 (351)
...+..++.+||=+| +| .|.++..+++.. ..+|++++ ++.-.+.+++. | .. ..+..+-.+ +.-.-.
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l-----G--a~--~~i~~~~~~~~~~~~~ 214 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL-----G--AE--QCINYHEEDFLLAIST 214 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH-----T--CS--EEEETTTSCHHHHCCS
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc-----C--CC--EEEeCCCcchhhhhcc
Confidence 445667789999997 55 488888887764 34899998 55546666653 1 11 122211111 111114
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+|+|+-.- ..+ .+....+.|+++|.++..
T Consensus 215 g~D~v~d~~-----g~~--~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 215 PVDAVIDLV-----GGD--VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp CEEEEEESS-----CHH--HHHHHGGGEEEEEEEEEC
T ss_pred CCCEEEECC-----CcH--HHHHHHHhccCCCEEEEe
Confidence 699988432 222 247889999999999875
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.06 E-value=0.49 Score=42.14 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCC--CCce
Q 018740 175 PVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA--SSSI 249 (351)
Q Consensus 175 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~--~~~f 249 (351)
..++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++. | .. ..+ |..+ ..+. -+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-----g--a~--~~~--~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-----G--AE--EAA--TYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-----T--CS--EEE--EGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-----C--CC--EEE--ECCcchhHHHHhcCc
Confidence 566889999997 4577777777653 34999999998888777652 1 11 112 2211 0000 0469
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+|+. -. . ..++...+.|+++|.++....
T Consensus 191 d~vid-~g-----~--~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 191 DLVLE-VR-----G--KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp EEEEE-CS-----C--TTHHHHHTTEEEEEEEEEC--
T ss_pred eEEEE-CC-----H--HHHHHHHHhhccCCEEEEEeC
Confidence 99986 32 2 247888899999999887543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=1.9 Score=39.47 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCH---HHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC------C
Q 018740 178 GGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSE---NMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------S 246 (351)
Q Consensus 178 ~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~---~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~------~ 246 (351)
+.+||-+|+|. |..+..+++. |. +|+++|.++ +-++.+++. ....+ | .+ .+. .
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~~----------ga~~v--~-~~-~~~~~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEET----------KTNYY--N-SS-NGYDKLKDSV 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHHH----------TCEEE--E-CT-TCSHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHHh----------CCcee--c-hH-HHHHHHHHhC
Confidence 78999999853 6666666554 54 999999988 777777653 11222 3 22 111 1
Q ss_pred CceeeEEeccccccCCChHHHH-HHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l-~~i~~~LkpgG~li~~~~ 286 (351)
+.+|+|+.+-.. + ..+ +.+.+.|+++|.++....
T Consensus 245 ~~~d~vid~~g~-----~-~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 245 GKFDVIIDATGA-----D-VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCEEEEEECCCC-----C-THHHHHHGGGEEEEEEEEECSC
T ss_pred CCCCEEEECCCC-----h-HHHHHHHHHHHhcCCEEEEEec
Confidence 469999854432 2 135 888999999999887644
|
| >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... | Back alignment and structure |
|---|
Probab=88.99 E-value=0.12 Score=36.81 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=23.5
Q ss_pred CceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..+.||.||....... ..+.+.|+.|+..+.
T Consensus 26 ~~y~Cp~CG~~~v~r~---------atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEE---------ETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceecc---------CCCeEECCCCCCEec
Confidence 4589999999665442 357899999998764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=0.39 Score=43.98 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCC-CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCCcee
Q 018740 174 KPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSID 250 (351)
Q Consensus 174 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~~fD 250 (351)
... ++.+||-+|+|. |.++..+++.. ..+|+++|.+++-++.+++.+ | ...+ +.. +...+.-..+.+|
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~l----G--a~~v--i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDL----G--ADDY--VIGSDQAKMSELADSLD 246 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTS----C--CSCE--EETTCHHHHHHSTTTEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHc----C--Ccee--eccccHHHHHHhcCCCC
Confidence 445 688999999864 67777776653 249999999988777766321 1 1111 111 1000100123699
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+-.-.-. ..++...+.|+++|.++....
T Consensus 247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 247 YVIDTVPVH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp EEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred EEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence 998543311 125667789999999887543
|
| >3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=88.37 E-value=0.36 Score=32.25 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=24.6
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
.....+.|..|+....... ...++|+.||+....
T Consensus 17 ~~~v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 17 PATMIYLCADCGARNTIQA----------KEVIRCRECGHRVMY 50 (63)
T ss_dssp --CCCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCCB
T ss_pred CCCeEEECCCCCCeeecCC----------CCceECCCCCcEEEE
Confidence 3356799999999776543 367999999986554
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.24 E-value=3.9 Score=35.59 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.++++|=.|++.|. .+..|++.|. +|+.+|.+ ...++.+...+... ..++.++.+|+.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVDVRD 82 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECCTTC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEccCCC
Confidence 46789999986653 4566667776 99999987 66666665555544 5688999999976
Q ss_pred CCC----------CCCceeeEEeccccccCC---Ch--------------HHHHHHHHhcccCCcEEEEEee
Q 018740 242 LPF----------ASSSIDAVHAGAAIHCWS---SP--------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 lp~----------~~~~fD~V~~~~vl~h~~---d~--------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..- .-+..|+++.+..+.... +. ..+++.+.+.++.+|.++....
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 420 013689999876553321 11 1345666777778888776543
|
| >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.21 Score=35.21 Aligned_cols=27 Identities=37% Similarity=0.992 Sum_probs=16.7
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
..||.|++++.+.+ +...|..|+..|.
T Consensus 3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----------DTAHCETCAKDFS 29 (81)
T ss_dssp CCCSSSCSCCEECS-----------SEEECTTTCCEEE
T ss_pred CCCCCCCCccccCC-----------CceECccccccCC
Confidence 56888888776654 3445666655443
|
| >1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=88.14 E-value=0.15 Score=33.48 Aligned_cols=39 Identities=18% Similarity=0.513 Sum_probs=23.0
Q ss_pred ceeCCCCCCCcc-cccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.|+..-. .......+.++.+...+.|.+|++.+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 477999998321 111111223334445789999998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.12 E-value=2.3 Score=38.56 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=62.5
Q ss_pred hccCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----
Q 018740 171 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----- 243 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----- 243 (351)
......++.+||-+|+ | .|.++..+++.. ..+|+++ .++.-++.+++. | ...+. +-.++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l-----G-----a~~i~-~~~~~~~~~~~ 210 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL-----G-----ATPID-ASREPEDYAAE 210 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH-----T-----SEEEE-TTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc-----C-----CCEec-cCCCHHHHHHH
Confidence 4456677899999994 3 477777777763 3499999 888888777653 1 11222 222211
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+-+-. . ..+....+.|+++|.++...
T Consensus 211 ~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 211 HTAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp HHTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred HhcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence 12346999985332 2 46788889999999988753
|
| >2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.95 E-value=0.11 Score=40.76 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccCCccccccccccccccCceeeecccC
Q 018740 94 AAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 94 ~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
+..+.+.|+.|+..|++++|+++++...
T Consensus 105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e 132 (141)
T 2j6a_A 105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP 132 (141)
T ss_dssp EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred ccCCEEECCCCCCcccccCCccCcCCcH
Confidence 4568899999999999999999998753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.74 Score=41.82 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=61.7
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-----
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----- 244 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~----- 244 (351)
..+. ++.+||-+|+|. |.++..+++.. +. +|+++|.+++-++.+++. .. .. .|..+..+
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~---------~v--~~~~~~~~~~~~~ 225 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD---------RL--VNPLEEDLLEVVR 225 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS---------EE--ECTTTSCHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH---------hc--cCcCccCHHHHHH
Confidence 4455 788999999864 77777777764 34 899999998877766542 11 11 12221110
Q ss_pred --CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 --ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+|+|+..-. . ...++...+.|+++|.++....
T Consensus 226 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 226 RVTGSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp HHHSSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred HhcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 0236999984332 2 2457888999999999887543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.70 E-value=1.9 Score=33.19 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCeEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceee
Q 018740 178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA 251 (351)
Q Consensus 178 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~ 251 (351)
..+|+=+|+|. |. +...|.+.+. +|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence 34799999865 33 3444455565 89999999988777664 24667888886532 12246888
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEee
Q 018740 252 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 252 V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+..-. +.. ..+....+.+. ...++....
T Consensus 74 vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~~ 104 (141)
T 3llv_A 74 VLITGS-----DDEFNLKILKALRSVS-DVYAIVRVS 104 (141)
T ss_dssp EEECCS-----CHHHHHHHHHHHHHHC-CCCEEEEES
T ss_pred EEEecC-----CHHHHHHHHHHHHHhC-CceEEEEEc
Confidence 875332 322 33444445555 555555433
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=0.7 Score=42.46 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=58.9
Q ss_pred CCC-CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CCCCCCc
Q 018740 174 KPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASSS 248 (351)
Q Consensus 174 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~~ 248 (351)
... ++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++.+. .. ..+ |..+ +.-..+.
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lG------a~--~v~--~~~~~~~~~~~~~~ 251 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFG------AD--SFL--VSRDQEQMQAAAGT 251 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSC------CS--EEE--ETTCHHHHHHTTTC
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcC------Cc--eEE--eccCHHHHHHhhCC
Confidence 444 688999999864 66777776653 3499999999887777664221 11 111 2211 1001136
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+|+..-.... .++...+.|+++|.++....
T Consensus 252 ~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 252 LDGIIDTVSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp EEEEEECCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCEEEECCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 999985433211 24566788999999887543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.48 E-value=9.8 Score=32.79 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=49.8
Q ss_pred CeEEEEcCccCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.+||=.|+ |..+..+++ .+. +|++++-++........ .+++++.+|+.++. -..+|+|+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence 48999995 776666554 455 99999998865544332 46899999998866 457899998
Q ss_pred ccccccCCCh
Q 018740 255 GAAIHCWSSP 264 (351)
Q Consensus 255 ~~vl~h~~d~ 264 (351)
........++
T Consensus 70 ~a~~~~~~~~ 79 (286)
T 3ius_A 70 STAPDSGGDP 79 (286)
T ss_dssp CCCCBTTBCH
T ss_pred CCCccccccH
Confidence 7765544344
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=87.47 E-value=6 Score=35.34 Aligned_cols=79 Identities=13% Similarity=0.219 Sum_probs=55.8
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C----
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~---- 244 (351)
.+++||=.|++.|. ++..|++.|. +|++++.++..++.+.+.+... + ...++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~-~-~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAE-G-SGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T-CGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-C-CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46689999987663 5566666776 9999999998887777766554 1 1237899999997642 0
Q ss_pred -CCCceeeEEeccccc
Q 018740 245 -ASSSIDAVHAGAAIH 259 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~ 259 (351)
..+..|+++.+..+.
T Consensus 83 ~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHTCCEEEEEECCCCC
T ss_pred HhCCCCCEEEECCCcC
Confidence 124689999877653
|
| >1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... | Back alignment and structure |
|---|
Probab=87.46 E-value=0.32 Score=33.37 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCceeCCCCCCCcccccCCCcccccccCCcccccccccc
Q 018740 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (351)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 107 (351)
...+.|+.||..+.... ....+|+.||+.
T Consensus 26 ~v~Y~C~~CG~~~e~~~----------~d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSLSR----------TDAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECCCT----------TSTTCCSSSCCC
T ss_pred eEEEECCCCCCcceeCC----------CCCccCCCCCce
Confidence 45689999999765543 356799999983
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=5.3 Score=35.17 Aligned_cols=104 Identities=12% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCCeEEEEcCcc----C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C--
Q 018740 177 LGGNIIDASCGS----G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~----G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~-- 244 (351)
.++++|=.|++. | .++..|++.|. +|+.++.++...+.+.+..... .++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHH
Confidence 467899999763 3 25667777776 8999999876555555444433 46888999997642 0
Q ss_pred ---CCCceeeEEecccccc-------C--CCh--------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ---ASSSIDAVHAGAAIHC-------W--SSP--------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ---~~~~fD~V~~~~vl~h-------~--~d~--------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-+..|+++.+..+.. + .++ ..+++.+.+.++.+|.++.....
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 1247899998765432 1 111 13456666777788888776543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=0.91 Score=40.93 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=77.7
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEecccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAAI 258 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl 258 (351)
+|||+=||.|.+...+.+.|. .-+.++|+++.+++.-+.+. + -.++.+|+.++... -...|+++...-.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~--------~-~~~~~~DI~~i~~~~~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH--------S-AKLIKGDISKISSDEFPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC--------C-SEEEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC--------C-CCcccCChhhCCHhhCCcccEEEecCCC
Confidence 699999999999999999885 35679999999888877752 2 25778999876422 2468999864322
Q ss_pred c---------cCCChH-HHHHH---HHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 259 H---------CWSSPS-TGVAE---ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 259 ~---------h~~d~~-~~l~~---i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+ -+.|+. .++.+ +.+.++|. +++.+.... .. . +...-..+.+.+.|+
T Consensus 72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~g----l~-----------~---~~~~~~~~~i~~~l~ 131 (331)
T 3ubt_Y 72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKG----MM-----------A---QRHNKAVQEFIQEFD 131 (331)
T ss_dssp GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCG----GG-----------G---CTTSHHHHHHHHHHH
T ss_pred CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecc----cc-----------c---ccccchhhhhhhhhc
Confidence 1 234554 34433 44556784 333333221 00 0 111112356777888
Q ss_pred HCCCeEEE
Q 018740 326 ACGLVDFK 333 (351)
Q Consensus 326 ~aGf~~v~ 333 (351)
+.|+.+..
T Consensus 132 ~~GY~v~~ 139 (331)
T 3ubt_Y 132 NAGYDVHI 139 (331)
T ss_dssp HHTEEEEE
T ss_pred cCCcEEEE
Confidence 89997654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=86.86 E-value=4.2 Score=34.93 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=67.2
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~--------- 244 (351)
.++++|=.|++.|. .+..|++.|. +|+.+|.++..++...+.+ ..++.++.+|+.+..-
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHH
Confidence 46789999976653 4556666776 9999999988776665543 2468889999876421
Q ss_pred -CCCceeeEEeccccccCC-----Ch--------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 245 -ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+..|+++.+..+.... ++ ..+.+.+...++++|.++.....
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 140 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV 140 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 114689999876543221 11 13455666777778887776543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=1.2 Score=40.11 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCCCC-eEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-CCCCC
Q 018740 174 KPVLGG-NIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL-PFASS 247 (351)
Q Consensus 174 ~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l-p~~~~ 247 (351)
+..++. +||-+|+ |.|.++..+++.. ..+|++++.+++-++.+++. | ...+ +-..+. ..+ ....+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l-----G--a~~~-i~~~~~~~~~~~~~~~~ 215 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL-----G--AKEV-LAREDVMAERIRPLDKQ 215 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT-----T--CSEE-EECC---------CCSC
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-----C--CcEE-EecCCcHHHHHHHhcCC
Confidence 344554 8999997 4577777777763 34899999998877777652 1 1111 111111 000 11234
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+|+|+-+-. . ..+....+.|+++|.+++...
T Consensus 216 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 216 RWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred cccEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence 6999885432 2 247788899999999887543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=4 Score=35.18 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=68.6
Q ss_pred CCCeEEEEcCc--cCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-------
Q 018740 177 LGGNIIDASCG--SGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~------- 244 (351)
.++++|=.|++ .|. ++..|++.|. +|+.++.++...+.+.+..... ...++.++.+|+.+..-
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTL---DRNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTS---SSCCCEEEECCCSSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhc---CCCCceEEeCCCCCHHHHHHHHHH
Confidence 36689999976 333 5667777776 8999998876666555554443 12378999999976530
Q ss_pred ---CCCceeeEEecccccc-------C--CChH--------------HHHHHHHhcccCCcEEEEEeec
Q 018740 245 ---ASSSIDAVHAGAAIHC-------W--SSPS--------------TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ---~~~~fD~V~~~~vl~h-------~--~d~~--------------~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+..|+++.+..+.+ + .+.+ .+++.+...++++|.++.....
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 0136899887765432 1 1111 2456677778888888776644
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.32 E-value=3 Score=38.24 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=58.0
Q ss_pred CCCCCeEEEEc-Cc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCCce
Q 018740 175 PVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI 249 (351)
Q Consensus 175 ~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~~f 249 (351)
..++.+||=+| +| .|.++..+++.. +.+|++++ ++.-.+.+++. ... ..+..+-.++. .....+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~l--------Ga~-~v~~~~~~~~~~~~~~~~g~ 249 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKL--------GAD-DVIDYKSGSVEEQLKSLKPF 249 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT--------TCS-EEEETTSSCHHHHHHTSCCB
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHc--------CCC-EEEECCchHHHHHHhhcCCC
Confidence 56788999999 34 488777777763 34899998 66666666542 111 11211111110 011468
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
|+|+-+ ...+...+....+.|+++|.++...
T Consensus 250 D~vid~-----~g~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 250 DFILDN-----VGGSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp SEEEES-----SCTTHHHHGGGGBCSSSCCEEEESC
T ss_pred CEEEEC-----CCChhhhhHHHHHhhcCCcEEEEeC
Confidence 998843 3344345677788999999988754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.11 E-value=7 Score=34.18 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C----C-----
Q 018740 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P----F----- 244 (351)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p----~----- 244 (351)
+++||=.|++.|. ++..|++.|. +|++++.+....+.+.+.+... ...++.++.+|+.+. . +
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNS---NHENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---TCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEccCCCcHHHHHHHHHHHH
Confidence 5688888876552 4555666676 9999999998877777666554 245799999999875 2 0
Q ss_pred -CCCceeeEEeccccc
Q 018740 245 -ASSSIDAVHAGAAIH 259 (351)
Q Consensus 245 -~~~~fD~V~~~~vl~ 259 (351)
..+..|+++.+..+.
T Consensus 87 ~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 87 THFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHSSCCEEEECCCCC
T ss_pred HhCCCCCEEEECCccc
Confidence 014689999877653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=6.2 Score=34.64 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C---
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSEN-MLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~-~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~--- 244 (351)
.++++|=.|++.|. ++..|++.|. +|+.+|.+.. ..+...+.+... ..++.++.+|+.+.. +
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 46789999976653 4556666776 8999998764 344444444443 467899999997642 0
Q ss_pred --CCCceeeEEeccccccCC------Ch--------------HHHHHHHHhcccCCcEEEEEee
Q 018740 245 --ASSSIDAVHAGAAIHCWS------SP--------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~------d~--------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+..|+++.+....+.. +. ..+++.+.+.++.+|.++....
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 113689999775432211 11 1345667777888888776543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=85.63 E-value=1.5 Score=39.39 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCCCCC-eEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-CCCCC
Q 018740 174 KPVLGG-NIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL-PFASS 247 (351)
Q Consensus 174 ~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l-p~~~~ 247 (351)
+..++. +||-+|+ |.|.++..+++.. ..+|++++.+++-++.+++. | ...+ +-..+. ..+ ....+
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l-----G--a~~v-~~~~~~~~~~~~~~~~~ 216 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL-----G--ASEV-ISREDVYDGTLKALSKQ 216 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH-----T--CSEE-EEHHHHCSSCCCSSCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-----C--CcEE-EECCCchHHHHHHhhcC
Confidence 344554 8999997 3477777776652 23899999998877777653 1 1111 111111 111 12234
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+|+|+.+- .. ..+....+.|+++|.+++...
T Consensus 217 ~~d~vid~~-----g~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 217 QWQGAVDPV-----GG--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp CEEEEEESC-----CT--HHHHHHHTTEEEEEEEEECCC
T ss_pred CccEEEECC-----cH--HHHHHHHHhhcCCCEEEEEec
Confidence 699988433 33 358888999999999987543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=5.6 Score=35.57 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=57.7
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCCceeeEEec
Q 018740 179 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG 255 (351)
Q Consensus 179 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~ 255 (351)
.+|.=||+|. | .++..+.+.|...+|+++|.+++.++.+++. |. +.-...|..+ . -...|+|+..
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-----G~----~~~~~~~~~~~~---~~~aDvVila 101 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-----GI----IDEGTTSIAKVE---DFSPDFVMLS 101 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-----TS----CSEEESCTTGGG---GGCCSEEEEC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-----CC----cchhcCCHHHHh---hccCCEEEEe
Confidence 5899999885 3 4566677776545899999999887777642 11 1112234333 1 1347998865
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
--.. ....+++++...|+||.+++-
T Consensus 102 vp~~---~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 102 SPVR---TFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp SCGG---GHHHHHHHHHHHSCTTCEEEE
T ss_pred CCHH---HHHHHHHHHhhccCCCcEEEE
Confidence 3322 235678888888998876543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.13 E-value=7 Score=33.76 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=68.3
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-------- 244 (351)
.++++|=.|++.|. .+..|++.|. +|+.++. +....+...+.+... ..++.++.+|+.+..-
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46688888876653 4556666776 8888775 455555555555544 5678999999976420
Q ss_pred --CCCceeeEEeccccccCC-----Ch--------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 --ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.-+..|+++.+..+.+.. ++ ..+.+.+.+.++++|.++......
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 155 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT 155 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 013689999776553321 11 134566777888889888766543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.04 E-value=5.1 Score=34.52 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCeEEEEcC----ccCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------
Q 018740 177 LGGNIIDASC----GSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------- 243 (351)
Q Consensus 177 ~~~~vLDiGc----G~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------- 243 (351)
.++++|=-|. |-|. .+..|++.|. +|+..|.++..++.+.+.+.+. ...++.++.+|+.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQL---NQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGG---TCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEccCCCHHHHHHHHHH
Confidence 4778999985 3344 5677778887 9999999988888887777665 2457888999987632
Q ss_pred --CCCCceeeEEeccccccC-------C--ChH--------------HHHHHHHhcccCCcEEEEEeec
Q 018740 244 --FASSSIDAVHAGAAIHCW-------S--SPS--------------TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 --~~~~~fD~V~~~~vl~h~-------~--d~~--------------~~l~~i~~~LkpgG~li~~~~~ 287 (351)
-.-+..|+++.+..+... . +.+ ...+.....++.+|.++.....
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~ 148 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL 148 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence 112578998876543211 1 111 1223455667788988776654
|
| >3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A | Back alignment and structure |
|---|
Probab=85.01 E-value=0.76 Score=37.77 Aligned_cols=40 Identities=13% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCceeCCCCCCCcc-cccCCCcccccccCCccccccccccc
Q 018740 69 KNVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 69 ~~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
.....||.|+..-. .-.....+.++-....+.|.+|++.+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 34678999998421 11112334455666788999999875
|
| >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 | Back alignment and structure |
|---|
Probab=84.88 E-value=0.49 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
...||.||+.+.... ..+.+.|..|+..+.
T Consensus 18 ~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAE---------HADRYSCGRCGYTEF 47 (55)
T ss_dssp SCCCTTTTTTCCCEE---------CSSEEECTTTCCCEE
T ss_pred cccCcCCCCceeEec---------cCCEEECCCCCCEEE
Confidence 578999998654332 136899999987653
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=0.59 Score=43.30 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
.++.+|+=+|+|. |......++.. +.+|+++|.++..++.+++.+. ..+.....+..++.-.-...|+|+.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEE
Confidence 3577999999864 55444444432 2399999999988777765321 1111111111111100125799986
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.-.......+.-+.++..+.++|||+++...
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 4322111112222456677899999887654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=84.52 E-value=4.7 Score=37.90 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=61.8
Q ss_pred cCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe--cCCC-------
Q 018740 173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISR------- 241 (351)
Q Consensus 173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~--d~~~------- 241 (351)
.+..++.+||-+|+ | .|..+..+++.. ..++++++.+++-++.+++. | ...+ +... |...
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l-----G--a~~~-i~~~~~~~~~~~~~~~~ 286 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL-----G--CDLV-INRAELGITDDIADDPR 286 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-----T--CCCE-EEHHHHTCCTTGGGCHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-----C--CCEE-Eeccccccccccccccc
Confidence 45667899999997 3 477777777763 34999999999888888652 1 1111 1111 1100
Q ss_pred ------------C-CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 242 ------------L-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 242 ------------l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+ ......+|+|+-+-. . ..++...+.|+++|.++...
T Consensus 287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 287 RVVETGRKLAKLVVEKAGREPDIVFEHTG-----R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSEEEECSC-----H--HHHHHHHHHSCTTCEEEESC
T ss_pred ccchhhhHHHHHHHHHhCCCceEEEECCC-----c--hHHHHHHHHHhcCCEEEEEe
Confidence 0 001246899985433 1 35778889999999998854
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.51 E-value=0.94 Score=40.93 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCeEEEEecCCC-CC-CCCCceeeEEeccccccC--------------CChHHHHHHHHhcccCCcEEEEEee
Q 018740 230 ENFLLVRADISR-LP-FASSSIDAVHAGAAIHCW--------------SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 230 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~--------------~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....++++|..+ +. +++++||+|++.--.... ......++++.++|+|||.+++...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 467788999754 33 457899999986332111 1245778999999999999988654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.41 E-value=6 Score=34.81 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=67.0
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS--ENMLKQCYEFVQQESNFPKENFLLVRADISRLPF------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~------- 244 (351)
.++++|=.|++.|. ++..|++.|. +|+.+|.+ ....+...+.+... ..++.++.+|+.+...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC----GRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT----TCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 36689999976553 4556666776 89999886 33444444444444 4678889999876420
Q ss_pred ---CCCceeeEEecccccc-CC-----Ch--------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ---ASSSIDAVHAGAAIHC-WS-----SP--------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ---~~~~fD~V~~~~vl~h-~~-----d~--------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+..|+++.+..... .. ++ ..+++.+...++.+|.++.....
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI 187 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence 0146899998766432 11 11 14456677778888888776544
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=84.27 E-value=2 Score=41.17 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=50.6
Q ss_pred HHHHHhccCCC------CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 166 FELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 166 ~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
...+..+++.. ..-+++|+=||.|.+...+.+.|. ..|.++|+++.+++.-+.+... .+...++.+|+
T Consensus 70 ~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~DI 143 (482)
T 3me5_A 70 FAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNEDI 143 (482)
T ss_dssp HHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESCT
T ss_pred HHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccch
Confidence 45555555432 235899999999999999998875 3478999999888877776421 13445677887
Q ss_pred CCC
Q 018740 240 SRL 242 (351)
Q Consensus 240 ~~l 242 (351)
.++
T Consensus 144 ~~i 146 (482)
T 3me5_A 144 RDI 146 (482)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.24 E-value=4.6 Score=34.61 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=62.9
Q ss_pred CCeEEEEcCccCHHH----HHHHH-hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-----C--
Q 018740 178 GGNIIDASCGSGLFS----RIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----A-- 245 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~----~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-----~-- 245 (351)
+++||=.|++ |..+ ..|++ .+. +|+.++.++...+...+.+... ..++.++.+|+.+... .
T Consensus 4 ~k~vlITGas-ggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (276)
T 1wma_A 4 IHVALVTGGN-KGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFL 76 (276)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHH
Confidence 5678877754 4444 44455 555 9999999987776666665544 4578899999876420 0
Q ss_pred ---CCceeeEEeccccccCC----C-h--------------HHHHHHHHhcccCCcEEEEEee
Q 018740 246 ---SSSIDAVHAGAAIHCWS----S-P--------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ---~~~fD~V~~~~vl~h~~----d-~--------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.+|+|+.+....... . . ..+++.+.+.++++|.++....
T Consensus 77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 13689999765432211 1 1 1344556666666777776543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.19 E-value=7.9 Score=33.57 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C---
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s-~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~--- 244 (351)
.++++|=.|++.|. ++..|++.|. +|+.++.. ....+...+.+... ..++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 46789999987653 5566667776 89888654 45555555555544 467889999997642 0
Q ss_pred --CCCceeeEEeccccccCC-----C--------------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 --ASSSIDAVHAGAAIHCWS-----S--------------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~-----d--------------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..+..|+++.+..+.+.. + +..+++.+.+.++++|.++.....
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 113689999876543221 1 123456677778888888776543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.98 E-value=6.8 Score=33.93 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
.++++|=-|.+.|. .+..|++.|. +|+..|.+++.++...+.+... ..++..+.+|+.+..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 46788888877664 4566677776 9999999999888887777665 567888999987532
Q ss_pred CCCCceeeEEecccccc
Q 018740 244 FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h 260 (351)
-.-+..|+++.+..+.+
T Consensus 82 ~~~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 82 AEGIHVDILINNAGIQY 98 (255)
T ss_dssp HTTCCCCEEEECCCCCC
T ss_pred HHCCCCcEEEECCCCCC
Confidence 12367999998765543
|
| >1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A | Back alignment and structure |
|---|
Probab=83.91 E-value=0.38 Score=43.33 Aligned_cols=40 Identities=13% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCceeCCCCCCCcc-cccCCCcccccccCCccccccccccc
Q 018740 69 KNVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 69 ~~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
...+.||.|+..-. .......+.++-....+.|.+|++.+
T Consensus 266 ~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 266 TDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 44689999998321 11112233455556678999999865
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=3.7 Score=36.22 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCeEEEEcCcc----CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C--
Q 018740 177 LGGNIIDASCGS----GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~----G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~-- 244 (351)
.++++|=.|++. |. ++..|++.|. +|+.+|.++...+...+..... ..+.++.+|+.+.. +
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHH
Confidence 367899999753 32 5666777776 9999999976555555444443 34678899987642 0
Q ss_pred ---CCCceeeEEeccccccC---------CCh--------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ---ASSSIDAVHAGAAIHCW---------SSP--------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ---~~~~fD~V~~~~vl~h~---------~d~--------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-+..|+++.+..+... .+. ..+++.+.+.++.+|.++.....
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~ 170 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY 170 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence 01468999987654321 111 13455666777788888776543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=83.71 E-value=0.87 Score=41.87 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred CCeEEEEcCcc-CHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 178 GGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
+.+||=+|+|. |.....+++. |. +|+++|.++.-++.+++..... +.....+..++.-.-..+|+|+..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR-------VELLYSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-------SEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCce-------eEeeeCCHHHHHHHHcCCCEEEEC
Confidence 47999999864 5544444443 54 9999999998888777653221 222211111111001258999865
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
-.......|.-+.++..+.++|||+++.....
T Consensus 238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 238 VLVPGRRAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCcCCCCCCeecCHHHHhhCCCCCEEEEEecC
Confidence 44332112211234566788999988775543
|
| >1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=83.67 E-value=0.32 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=23.2
Q ss_pred CceeCCCCCCCcc-cccCCCcccccccCCccccccccccc
Q 018740 70 NVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 70 ~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
....||.|+..-. .-.....+.++-+.-.+.|.+|++.+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3468999998421 11112233444455578899999765
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.08 E-value=5.4 Score=34.32 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----C---
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gv-D~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~--- 244 (351)
.++++|=.|++.|. ++..|++.|. +|+.+ +.+....+...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKL----GRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTT----TSCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 46689999987653 5566666776 88887 66666666666655544 467889999997642 0
Q ss_pred --CCCceeeEEeccccc-c---CCC--h--------------HHHHHHHHhcccCCcEEEEEee
Q 018740 245 --ASSSIDAVHAGAAIH-C---WSS--P--------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~-h---~~d--~--------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.-+..|+++.+.... . +.+ + ..+++.+.+.++++|.++....
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 014689999776432 1 111 1 1345566667777787776554
|
| >2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5 | Back alignment and structure |
|---|
Probab=82.51 E-value=0.5 Score=36.15 Aligned_cols=29 Identities=31% Similarity=0.772 Sum_probs=23.0
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
+-.||.|++...-.. ...+.|+.|++.+.
T Consensus 27 lP~CP~C~seytYeD----------g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 27 LPPCPQCNSEYTYED----------GALLVCPECAHEWS 55 (138)
T ss_dssp SCCCTTTCCCCCEEC----------SSSEEETTTTEEEC
T ss_pred CCCCCCCCCcceEec----------CCeEECCccccccC
Confidence 356999999876654 36789999999885
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.47 E-value=9.2 Score=33.09 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeC-------------CHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-------------SENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-------------s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
.++++|=.|++.|. .+..|++.|. +|+.+|. +...++...+.+... ..++.++.+|+.
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~ 83 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA----NRRIVAAVVDTR 83 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence 36689999987653 5566677776 9999998 566666665555544 568899999997
Q ss_pred CCC-----CC-----CCceeeEEeccccc
Q 018740 241 RLP-----FA-----SSSIDAVHAGAAIH 259 (351)
Q Consensus 241 ~lp-----~~-----~~~fD~V~~~~vl~ 259 (351)
+.. +. -+..|+++.+..+.
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVA 112 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 642 00 14689999876553
|
| >1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1 | Back alignment and structure |
|---|
Probab=82.26 E-value=0.46 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.479 Sum_probs=21.6
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
++.|| |+..+.... .....+|+ ||......
T Consensus 4 vv~C~-C~~~~~~~~---------~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRALYSRE---------GAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCCEEEET---------TCSEEEET-TTEEEECC
T ss_pred EEECC-CCCEEEEcC---------CCcEEECC-CCCeeeec
Confidence 47899 998765544 23678899 99876544
|
| >3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=82.03 E-value=0.6 Score=29.75 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=21.9
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
...+...||.|++.+. .+...|..||+..
T Consensus 10 r~~~k~iCpkC~a~~~-------------~gaw~CrKCG~~~ 38 (51)
T 3j21_g 10 RIFKKYVCLRCGATNP-------------WGAKKCRKCGYKR 38 (51)
T ss_dssp HSSSEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred HHhCCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence 3456789999998732 3788999998763
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.97 E-value=0.94 Score=41.74 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCCeEEEEcCcc-CHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGS-GLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 254 (351)
++.+|+=+|+|. |......+ ..|. +|+++|.++..++.+++.. ...+.....+...+.-.-..+|+|+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~-------g~~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVF-------GGRVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT-------TTSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc-------CceEEEecCCHHHHHHHHhCCCEEEE
Confidence 457999999863 44333333 3354 9999999998777665432 11222211111111100125799886
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+-.......+.-+.+++.+.+++||+++...
T Consensus 236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 5433211111112466778889999877654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.87 E-value=8.7 Score=33.64 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=68.7
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
.++.+|=-|.+.|. .+..|++.|. +|+.+|.+++.++.+.+.+ ..+...+.+|+.+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 46788988987764 5666777776 9999999998877665543 346778889987642
Q ss_pred CCCCceeeEEeccccccCC---C----------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWS---S----------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~---d----------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-.-+..|+++.+....... + +-...+.+.+.|+.+|.++....
T Consensus 99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 1125789998776543321 1 12445677788888888776554
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.74 E-value=8.5 Score=33.15 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh-hCCCCCCCeEEEEecCCCCCC--------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-ESNFPKENFLLVRADISRLPF-------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~g~~~~~i~~~~~d~~~lp~-------- 244 (351)
.++++|=.|++.|. .+..|++.|. +|+.++.++..++.+.+.+.. . ..++.++.+|+.+..-
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF----GTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 35688888876553 4556666676 999999998888777666554 3 4678999999977531
Q ss_pred --CCCceeeEEeccccc
Q 018740 245 --ASSSIDAVHAGAAIH 259 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~ 259 (351)
..+..|+++.+..+.
T Consensus 93 ~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHTSCSEEEEECCCC
T ss_pred HHHcCCCCEEEECCCcC
Confidence 013689999876543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.71 E-value=6.1 Score=33.90 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=49.3
Q ss_pred CCCeEEEEcCccC---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CC--
Q 018740 177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA-- 245 (351)
Q Consensus 177 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~-- 245 (351)
.+++||=.|++.| .++..|++.|. +|++++. ++..++...+.+... ..++.++.+|+.+.. +.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 93 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDKA 93 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 3568887776433 13445555665 8999998 776666555555443 467889999987642 00
Q ss_pred ---CCceeeEEeccccc
Q 018740 246 ---SSSIDAVHAGAAIH 259 (351)
Q Consensus 246 ---~~~fD~V~~~~vl~ 259 (351)
-+.+|+|+.+....
T Consensus 94 ~~~~~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 94 VSHFGGLDFVMSNSGME 110 (274)
T ss_dssp HHHHSCEEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13689999776543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.50 E-value=11 Score=32.18 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCc--cCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 175 PVLGGNIIDASCG--SGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 175 ~~~~~~vLDiGcG--~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
...+++||=.|++ .|. ++..|++.|. +|+.++.+....+.+++..... .++.++.+|+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~ 83 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALF 83 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHH
Confidence 3457799999965 332 4556666676 9999998865555444433332 45788999987642
Q ss_pred ----CCCCceeeEEeccccccC----------CCh--------------HHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ----FASSSIDAVHAGAAIHCW----------SSP--------------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~----------~d~--------------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
-..+..|+++.+..+... .++ ..+++.+.+.++++|.++.....
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 155 (271)
T 3ek2_A 84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYL 155 (271)
T ss_dssp HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecc
Confidence 012478999987654321 111 13455666677778887765543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.47 E-value=6.5 Score=34.05 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.++++|=.|++.|. .+..|++.|. +|+.+|.+ .+.++...+.+... ..++.++.+|+.+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 85 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVRD 85 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCCC
Confidence 46789999976552 5566667776 99999987 66666655555554 5689999999976
Q ss_pred CC-----C-----CCCceeeEEecccccc
Q 018740 242 LP-----F-----ASSSIDAVHAGAAIHC 260 (351)
Q Consensus 242 lp-----~-----~~~~fD~V~~~~vl~h 260 (351)
.. + .-+..|+++.+..+..
T Consensus 86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 114 (278)
T 3sx2_A 86 RESLSAALQAGLDELGRLDIVVANAGIAP 114 (278)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 42 0 0146899998776543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.46 E-value=7.2 Score=33.76 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEe-CCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC--------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALD-YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-------- 244 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD-~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-------- 244 (351)
.++++|=.|++.|. .+..|++.|. +|+.++ .+....+...+.+... ..++.++.+|+.+..-
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~ 99 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAA----GGKALTAQADVSDPAAVRRLFATA 99 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 36689989987653 5566677776 888774 4555555555555544 4678899999976420
Q ss_pred --CCCceeeEEeccccccCC-----Ch--------------HHHHHHHHhcccCCcEEEEEee
Q 018740 245 --ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
..+..|+++.+..+.... ++ ..+++.+.+.++++|.++....
T Consensus 100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 014799999876543321 11 1345566777777888777653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.54 E-value=8.4 Score=33.90 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=50.9
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CC---
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 245 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~--- 245 (351)
.++++|=.|++.|. ++..|++.|. +|+.++.++..++...+.+... +....++.++.+|+.+.. +.
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 35678888865542 4455566666 9999999988776665555443 100117889999987642 00
Q ss_pred --CCceeeEEecccc
Q 018740 246 --SSSIDAVHAGAAI 258 (351)
Q Consensus 246 --~~~fD~V~~~~vl 258 (351)
-+..|+++.+..+
T Consensus 102 ~~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 102 AKFGKIDILVNNAGA 116 (297)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 1368999987654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=4.3 Score=38.92 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
..++.+|+=+|+|. |......++.. +.+|+++|.++...+.+++. .+.. .++.++ -...|+|+
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~---l~~aDvVi 334 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----------GFDV--VTVEEA---IGDADIVV 334 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH---GGGCSEEE
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH---HhCCCEEE
Confidence 34688999999875 65554444432 24999999999877666542 2222 222221 13579998
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
..-.-.++-+ .+..+.+|+||+++...
T Consensus 335 ~atgt~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 335 TATGNKDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp ECSSSSCSBC-----HHHHHHSCTTCEEEECS
T ss_pred ECCCCHHHHH-----HHHHHhcCCCcEEEEeC
Confidence 7533233211 25566789999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 351 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 7e-12 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 8e-12 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-11 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-11 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-11 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-10 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-09 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 6e-09 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-08 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 3e-08 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 8e-08 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 3e-07 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 3e-07 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 5e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 4e-06 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 4e-06 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 8e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 3e-05 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 7e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 9e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 1e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 2e-04 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 2e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.003 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 62.3 bits (150), Expect = 7e-12
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
+ ++D G+G + F+ + +D ++ M++ F Q++
Sbjct: 14 CRA--EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQ 69
Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
+ LPF S D + A H +S V E++RVL+ G F+ +VD
Sbjct: 70 ---QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYA 122
Query: 293 NLIPFSRLLRQNMMQIS--GSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 343
P ++ ++ S E + + A L + + +
Sbjct: 123 PEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQY 175
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 62.7 bits (151), Expect = 8e-12
Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 42/225 (18%)
Query: 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMS 131
+CP+C++PL+ +S C + + ++ + S
Sbjct: 2 FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 50
Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
E + R+ F+ G P ++ ++ L ++D CG G
Sbjct: 51 A--EMMQ-----------ARRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEG 96
Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
++ FA + LD S+ +K + Q + A RLPF+ +S+
Sbjct: 97 YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFC--------VASSHRLPFSDTSM 148
Query: 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 294
DA+ A E++RV++PGG + T L
Sbjct: 149 DAIIRIYAPCKA-------EELARVVKPGGWVITATPGPRHLMEL 186
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 60.2 bits (145), Expect = 2e-11
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%)
Query: 154 FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
PGP L+ +P +D CG+G + A V A+D +
Sbjct: 8 IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65
Query: 212 NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 271
+ +Q+ + +N L+ D ID G + + I
Sbjct: 66 EAISTTEMNLQR--HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI---LRII 120
Query: 272 SRVLRPGGVFVGTTYIVDGPFNLIPFSR 299
L+PGG + T +++ F + R
Sbjct: 121 KDKLKPGGRIIVTAILLETKFEAMECLR 148
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 61.0 bits (147), Expect = 3e-11
Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
L+ K +I+D CG G + S +D E +L + E +
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 77
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV---- 282
+ + + D A + ++P T + ++ ++ GG +
Sbjct: 78 DSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132
Query: 283 -----GTTYIVDG--PFNLIPFSRLLR--QNMMQISGSYTFLSEREIEDLCRACGLVDFK 333
+Y++DG I L + ++ Q +G + +I G+ + +
Sbjct: 133 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG-MKIPIYLSELGVKNIE 191
Query: 334 CT 335
C
Sbjct: 192 CR 193
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 60.4 bits (145), Expect = 4e-11
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 9/170 (5%)
Query: 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
P E+++ + L+ G I+D GSG +A+ + +D S Q
Sbjct: 16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74
Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
++ + +F+ A A+ D A + +++ L+PGG
Sbjct: 75 RAEELGVSERVHFIHNDAAG---YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 131
Query: 280 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 329
+ + I + + +P + + Q S S FL+ + G
Sbjct: 132 IML----IGEPYWRQLPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGY 176
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 58.5 bits (140), Expect = 1e-10
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
LK ++D + G G + FA VVA D +E++LK F++ + E
Sbjct: 13 LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYV 68
Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
+ + A H + +P++ V+E RVL+ GG + +VD
Sbjct: 69 QGDAEQMPFTDERFHIVTCRI---AAHHFPNPASFVSEAYRVLKKGGQLL----LVDNSA 121
Query: 293 NLIPFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 343
+ + + + + + + G + +F
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.7 bits (133), Expect = 2e-09
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192
A E + R W Q ++ + + G L+ ++D +CG+G+ S
Sbjct: 13 AAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDS 71
Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-----SRLPFASS 247
+ + G V ++D S+ MLK + P + ++ +P
Sbjct: 72 IMLVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129
Query: 248 SIDAVHAGAAIHCWSSPSTG-------VAEISRVLRPGGVFVGTTYIVD 289
+ G + + I+ ++RPGG+ V D
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 178
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 6e-09
Identities = 32/264 (12%), Positives = 68/264 (25%), Gaps = 73/264 (27%)
Query: 135 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 193
+ P G P + + V G +ID G ++
Sbjct: 21 NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69
Query: 194 IFAKSGLFSLVVALDYSENMLKQ----------------CYEFVQQESNFPKE------- 230
+ + F + D+ E ++ + +
Sbjct: 70 LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129
Query: 231 ----NFLLVRADISR------LPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLR 276
++ D+ + A DA+ + + +S + I+ +LR
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR 189
Query: 277 PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL------- 329
PGG + + + + L +RL + +SE E+ + G
Sbjct: 190 PGGHLLLIGAL-EESWYLAGEARL----------TVVPVSEEEVREALVRSGYKVRDLRT 238
Query: 330 ------VDFKCTRNRGFVMFTATK 347
+ +G A K
Sbjct: 239 YIMPAHLQTGVDDVKGVFFAWAQK 262
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 53.0 bits (126), Expect = 1e-08
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 6/132 (4%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
L++ Y K G +++D CG G + ++G +D +E + +
Sbjct: 17 LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 73
Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGT 284
K F + + + + +S+ I+R LRPGG F+ T
Sbjct: 74 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133
Query: 285 TYIVDGPFNLIP 296
D
Sbjct: 134 VPSRDVILERYK 145
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 51.9 bits (123), Expect = 1e-08
Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 24/215 (11%)
Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
M+ E + + + G + + P G +D CG+G S A +G
Sbjct: 1 MTVRDENYFTEKY---GLTRTHSDVLAAAKVVAP---GRTLDLGCGNGRNSLYLAANGYD 54
Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
+ + +++ + L D + + +
Sbjct: 55 VTAWDKNPA------SMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108
Query: 262 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSER 318
+ +A + R +PGG + + F + F ++ ++ +
Sbjct: 109 EAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELR-----RYYEGW 163
Query: 319 EIEDLCRACG-LVDFKCTRNRG---FVMFTATKPS 349
++ G L NR F A K +
Sbjct: 164 DMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA 198
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 1e-08
Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 24/142 (16%)
Query: 165 EFELMKGYLKPVLGG------------NIIDASCGSGLFSRIFAK------SGLFSLVVA 206
E + M+ ++ L G I+ G+G G+
Sbjct: 16 EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEV 75
Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHAGAAIHC 260
++ S + + E V + SN F + S D +H ++
Sbjct: 76 VEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY 135
Query: 261 WSSPSTGVAEISRVLRPGGVFV 282
+ +L +
Sbjct: 136 VKDIPATLKFFHSLLGTNAKML 157
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 3e-08
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 7/121 (5%)
Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLL 234
+D G G A + ++ ++ K ++ + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 235 VRADISRLPFASSSIDA-VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 293
R D + + V + E ++ GG V + F
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR 274
Query: 294 L 294
+
Sbjct: 275 I 275
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 50.3 bits (119), Expect = 8e-08
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 17/169 (10%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
+++ + GN+++ G F+ + F+ + ++ SE + ++ +
Sbjct: 11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKDGITY 68
Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTY 286
F D + + P + I L GG
Sbjct: 69 IHSRF--------EDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120
Query: 287 IVDGPFNLIPFSRLLRQNMMQIS------GSYTFLSEREIEDLCRACGL 329
+ I + + ++ G + +E GL
Sbjct: 121 NANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 28/216 (12%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL--- 234
G +ID G ++ + A F + D+++ ++ +++++E +
Sbjct: 52 GDTLIDIGSGPTIYQ-VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA 110
Query: 235 ----------------------------VRADISRLPFASSSIDAVHAGAAIHC----WS 262
V P D V A+ C
Sbjct: 111 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD 170
Query: 263 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 322
+ + ++ +L+PGG V T + + + + L + E+E
Sbjct: 171 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMV----------GKREFSCV-ALEKGEVEQ 219
Query: 323 LCRACGL--VDFKCTR---------NRGFVMFTATK 347
G + N G A K
Sbjct: 220 AVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 255
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 48.6 bits (115), Expect = 3e-07
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
+K I+ +G A +V A++Y+ +++ E + +
Sbjct: 71 PIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR---ELLDACAERENII 125
Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+L +A+ + + + L+ GG +
Sbjct: 126 PILGD-ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 19/159 (11%), Positives = 48/159 (30%), Gaps = 16/159 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
GG +++ G + + ++ + ++ ++ + ++ ++ ++++ L
Sbjct: 54 GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112
Query: 238 DISRLPFASS---SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 294
LP D + R+L+PGGV NL
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY--------CNL 164
Query: 295 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 333
+ L++ I+ + E G
Sbjct: 165 TSWGELMKSKYSDITIMF----EETQVPALLEAGFRREN 199
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 6/111 (5%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
L+ ++ SG A ++ A++YS ++ E V++ +N
Sbjct: 53 KLRG--DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNI---I 107
Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
LL A I + A L+ G V
Sbjct: 108 PLLFDASKPWKYS-GIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 45.2 bits (105), Expect = 4e-06
Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)
Query: 145 IYERGWR-QNFVWGGFPGPEKE--------------FELMKGYLKPVLGGNIIDASCGSG 189
Y W ++ G + P + + +D G G
Sbjct: 20 FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79
Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
+R + S + L+ + K+ E+ Q +P +S
Sbjct: 80 GAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITV--KYGSFLEIPCEDNSY 136
Query: 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 309
D + + A E +RVL+P GV T + + + +L + +
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL--- 193
Query: 310 GSYTFLSEREIEDLCRACGLVDFKC 334
+ S L + CGLV +
Sbjct: 194 --HDMGSLGLYRSLAKECGLVTLRT 216
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 8e-06
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
++D CG+G+ S AK+G V+ +D SE + + + L++
Sbjct: 36 DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLED---TITLIKG 91
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTG---VAEISRVLRPGGVFV---GTTYIVDGP 291
I + +D + + + S + ++ L GG T +V
Sbjct: 92 KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLV--- 148
Query: 292 FNLIPFSRLLRQNMMQISGSYTF 314
+ + Y F
Sbjct: 149 --AVSDVNKHADRIAFWDDVYGF 169
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.8 bits (103), Expect = 1e-05
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222
K+ + G +++A GSG + ++ G V++ + + + V
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
P +N+ LV +D++ S+D + +P + +SR+L GGV +
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLM 197
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
++D G+G+ AK+G V+ ++ S ++N +++
Sbjct: 34 DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVK---IVKANKLDHVVTIIKG 89
Query: 238 DISRLPFASSSIDAVHAGAAIHC---WSSPSTGVAEISRVLRPGGVFV---GTTYIV 288
+ + +D + + +C S +T + + L P G+ T Y+
Sbjct: 90 KVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT 146
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226
+M+ L+P G +I++ GSG S + + ++ E+ LK+ + + + +
Sbjct: 78 IMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ I A I P V +I+ +++PG V
Sbjct: 136 IGNVRT--------SRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (101), Expect = 3e-05
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 11/129 (8%)
Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML----KQCYEFVQQESNFP 228
LK G +D G G A +L + ++ Q E ++ +
Sbjct: 214 LKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271
Query: 229 KEN---FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVG 283
++ + I + V +I + + G +
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331
Query: 284 TTYIVDGPF 292
+ +
Sbjct: 332 LKSLRSLTY 340
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 7e-05
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
++D CG+G+ S AK G V+ +D S + + +R
Sbjct: 39 DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITL---LRG 94
Query: 238 DISRLPFASSSIDAVHA---GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
+ + +D + + G + S T + L GG+
Sbjct: 95 KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 9e-05
Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 19/186 (10%)
Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
L+ Y+K G ++D +CG G FS + G ++ + ++ +
Sbjct: 29 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE------VVGVDISEDMIRKAREYAK 80
Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284
+ N + D +L F + D V +I + + E+ RVL+P G F+
Sbjct: 81 SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140
Query: 285 TYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 344
+ + S ++ Q + + I D +++FK ++ V F
Sbjct: 141 FTDLRELLPRLKESLVVGQK---------YWISKVIPDQEERTVVIEFKSEQDSFRVRFN 191
Query: 345 ATKPSQ 350
+
Sbjct: 192 VWGKTG 197
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 15/167 (8%)
Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233
+D G G ++ ++ L+ ++ML++ +
Sbjct: 90 PGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILAS 148
Query: 234 LVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 293
+ A + + I + + L P G G
Sbjct: 149 METATLPPNTYDLIVIQWTAI---YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD-- 203
Query: 294 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 340
+ ++ S S+ + L G+ K +
Sbjct: 204 ---------RFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 17/163 (10%)
Query: 124 KDYGELM--SPATEFF-RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGN 180
K GE++ S + + +P + R K+ + L G
Sbjct: 52 KGPGEIIRTSAGKKGYILIPSLIDEIMNMKR-----RTQIVYPKDSSFIAMMLDVKEGDR 106
Query: 181 IIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
IID GSG + A+ G V A + E K + + +
Sbjct: 107 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTI------- 159
Query: 240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
++ S D A P + + L+ GG F
Sbjct: 160 -KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFA 201
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 11/139 (7%)
Query: 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
+K + + ++ + +D +CG+G + ++ ++ ++
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSE 74
Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRP 277
+ + L DIS L + + +S L+
Sbjct: 75 AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134
Query: 278 GGVFVGTTYIVDGPFNLIP 296
GGVF+ ++
Sbjct: 135 GGVFIFDINSYYKLSQVLG 153
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 2e-04
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 16/130 (12%)
Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222
K+ ++ + G +++A GSG S +K+ G V++ + ++ + +
Sbjct: 85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144
Query: 223 Q--------ESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEIS 272
+N + DIS S + DAV +P +
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML-----NPHVTLPVFY 199
Query: 273 RVLRPGGVFV 282
L+ GGV
Sbjct: 200 PHLKHGGVCA 209
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE- 230
+LKP I+D + G G SR + ++ +D +L+ E +++ S+
Sbjct: 18 FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF 77
Query: 231 -------NFLLVRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281
+FLL I ++ + + + + +L PGG
Sbjct: 78 KVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRI 137
Query: 282 V 282
V
Sbjct: 138 V 138
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.6 bits (83), Expect = 0.003
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 11/177 (6%)
Query: 159 FPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
+ E + ++ K ++D +CG+G+ + A+ VV LD E ML+
Sbjct: 20 IERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLR 77
Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVL 275
++ + + V + F + ++ + ++++ L
Sbjct: 78 VARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTM--FFSTIMYFDEEDLRKLFSKVAEAL 135
Query: 276 RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 332
+PGGVF+ P ++ + RE+E +
Sbjct: 136 KPGGVFITDFPCWFYGGRDGPVVWNEQKG----EEKLVIMDWREVEPAVQKLRFKRL 188
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.96 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.94 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.93 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.9 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.88 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.87 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.87 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.86 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.86 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.85 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.83 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.8 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.79 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.76 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.76 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.74 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.73 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.72 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.71 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.7 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.7 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.67 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.66 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.65 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.59 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.58 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.56 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.54 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.49 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.45 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.45 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.37 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.34 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.33 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.25 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.23 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.14 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.13 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.13 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.1 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.1 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.08 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.07 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.05 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.99 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.96 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.91 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.86 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.84 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.8 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.79 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.69 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.68 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.67 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.64 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.6 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.57 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.56 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.53 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.51 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.51 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.46 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.45 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.43 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.39 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.37 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.36 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.29 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.25 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.24 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d2jnya1 | 59 | Uncharacterized protein Cgl1405/cg1592 {Corynebact | 98.04 | |
| d2pk7a1 | 59 | Uncharacterized protein PFL1779 {Pseudomonas fluor | 98.0 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.98 | |
| d2hf1a1 | 59 | Hypothetical protein CV3345 {Chromobacterium viola | 97.94 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.86 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.81 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.11 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.11 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.11 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.08 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.08 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.75 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.61 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.59 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.55 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.52 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.51 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.35 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.29 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.27 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.22 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.21 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.08 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.07 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.98 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.23 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.15 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.14 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.93 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.1 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.83 | |
| d2akla2 | 38 | Hypothetical protein PA0128, N-terminal domain {Ps | 93.74 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.65 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.61 | |
| d1dl6a_ | 58 | Transcription initiation factor TFIIB, N-terminal | 93.34 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.26 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.22 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.86 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.79 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.76 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.33 | |
| d1tfia_ | 50 | Transcriptional factor SII, C-terminal domain {Hum | 91.28 | |
| d1qypa_ | 57 | RBP9 subunit of RNA polymerase II {Archaeon Thermo | 91.02 | |
| d2jnea1 | 71 | Hypothetical protein YfgJ {Escherichia coli [TaxId | 90.93 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.71 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 89.98 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.74 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 89.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.43 | |
| d1pfta_ | 50 | Transcription initiation factor TFIIB, N-terminal | 89.4 | |
| d1twfi2 | 72 | RBP9 subunit of RNA polymerase II {Baker's yeast ( | 89.35 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.1 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.51 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.4 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.33 | |
| d1pfva3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch | 88.18 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.35 | |
| d1rqga3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro | 87.16 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.01 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 85.95 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 85.39 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.25 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.9 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 84.87 | |
| d1k3xa3 | 40 | Endonuclease VIII {Escherichia coli [TaxId: 562]} | 84.11 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 83.98 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.11 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 82.43 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 82.14 | |
| d1twfl_ | 46 | RBP12 subunit of RNA polymerase II {Baker's yeast | 82.14 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.72 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.28 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 80.49 | |
| d1wjva1 | 35 | Cell growth regulating nucleolar protein LyaR {Mou | 80.26 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.9e-28 Score=219.50 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=138.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccCCCCCccccCccchhhhcCChhhhhhhhhhh
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~r 151 (351)
++||+|+++|.... +.++|.+||+++..++||++++.......|..... .+.+. .|
T Consensus 2 f~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~--~~~~~-----------ar 57 (268)
T d1p91a_ 2 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS--AEMMQ-----------AR 57 (268)
T ss_dssp BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS--HHHHH-----------HH
T ss_pred ccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCCC--HHHHH-----------HH
Confidence 78999999987554 67999999999999999999987654443333211 11111 13
Q ss_pred hhhhcCCCCCc--HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC
Q 018740 152 QNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK 229 (351)
Q Consensus 152 ~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~ 229 (351)
+.+...+++.. +.....+...+. .++.+|||||||+|.++..+++.+++.+++|+|+|+.|++.|+++ .
T Consensus 58 ~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------~ 128 (268)
T d1p91a_ 58 RAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------Y 128 (268)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------C
T ss_pred HHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------c
Confidence 44444444321 222334444443 457799999999999999999998888999999999999999886 5
Q ss_pred CCeEEEEecCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccC
Q 018740 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 289 (351)
+++.+.++|+.++|+++++||+|++.++++| ++|+.|+|||||++++.+|+.+
T Consensus 129 ~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 129 PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred ccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 7899999999999999999999999999887 5789999999999999998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=1.2e-26 Score=202.85 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=133.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+++.++..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++... ..++++++++|++++|+++
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSCT
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhccccc---ccccccccccccccccccc
Confidence 4566677888889999999999999999999986 9999999999999999988776 2588999999999999999
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~l~~ll 324 (351)
++||+|+|.+++||++|+..+|+++.++|||||++++.++.... .+....+..... ....+...++.+++.+++
T Consensus 80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE----NDAFDVFYNYVEKERDYSHHRAWKKSDWLKML 155 (231)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS----SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHH
T ss_pred cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCC----CHHHHHHHHHHHhhcccCcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998876532 222222222211 133466788999999999
Q ss_pred HHCCCeEEEEE
Q 018740 325 RACGLVDFKCT 335 (351)
Q Consensus 325 ~~aGf~~v~~~ 335 (351)
+++||++++..
T Consensus 156 ~~aGf~~~~~~ 166 (231)
T d1vl5a_ 156 EEAGFELEELH 166 (231)
T ss_dssp HHHTCEEEEEE
T ss_pred HHCCCEEEEEE
Confidence 99999987644
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=5.7e-26 Score=199.18 Aligned_cols=160 Identities=20% Similarity=0.227 Sum_probs=135.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++.+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++... +.+++.++++|++++|++
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~---~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSC
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccc---cccccccccccccccccc
Confidence 46778888889999999999999999999999876 9999999999999999998876 247899999999999999
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHh--hccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~l~~l 323 (351)
+++||+|+|.++++|++|+..+|+++.++|||||++++.++.... .+....+...+. ..+.+...++..++..+
T Consensus 80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS----SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC----CHHHHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence 999999999999999999999999999999999999998776532 233332222211 13456778899999999
Q ss_pred HHHCCCeEEEE
Q 018740 324 CRACGLVDFKC 334 (351)
Q Consensus 324 l~~aGf~~v~~ 334 (351)
++.+||.+...
T Consensus 156 ~~~~gf~~~~~ 166 (234)
T d1xxla_ 156 FSANQLAYQDI 166 (234)
T ss_dssp HHHTTEEEEEE
T ss_pred HHHCCCceeEE
Confidence 99999987653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.93 E-value=1.8e-24 Score=194.84 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=131.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.......++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... |. ..+++++++|+.++|++
T Consensus 56 ~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~-gl-~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 56 ASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA-GL-ADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH-TC-TTTEEEEECCTTSCSSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccc-cc-ccccccccccccccccc
Confidence 3444555567788999999999999999998873 349999999999999999988776 33 46899999999999999
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+++||+|++..+++|++|+..+++++.++|||||++++.++........... ..+.... ......+..++.++++
T Consensus 133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~s~~~~~~~l~ 207 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI-QPILDRI----KLHDMGSLGLYRSLAK 207 (282)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG-HHHHHHH----TCSSCCCHHHHHHHHH
T ss_pred ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH-HHHHHHh----ccCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876543322222 2222111 1234568899999999
Q ss_pred HCCCeEEEEE
Q 018740 326 ACGLVDFKCT 335 (351)
Q Consensus 326 ~aGf~~v~~~ 335 (351)
++||.++...
T Consensus 208 ~~Gf~~i~~~ 217 (282)
T d2o57a1 208 ECGLVTLRTF 217 (282)
T ss_dssp HTTEEEEEEE
T ss_pred HcCCceEEEE
Confidence 9999988755
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=3.8e-24 Score=183.87 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=113.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+.+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.++++|++++|+++++||+|++.++
T Consensus 37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~~~ 100 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT 100 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccccc
Confidence 5689999999999887762 579999999999999873 688999999999999999999999999
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH--hhccCCccCCCHHHHHHHHHHCCCeEEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACGLVDFKCT 335 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~ 335 (351)
|||++|+..+++++.++|+|||.+++.+++.+.. +........ .....+..+++.+++.++|+++||+++++.
T Consensus 101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccccccchhhhhhcCCCCceEEEEecCCcch-----hHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 9999999999999999999999999999876431 111111111 113446678999999999999999988744
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4e-23 Score=182.07 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=134.1
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.....+.+...+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++.... |. ..+++++.+|+.+
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~-gl-~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL-GV-SERVHFIHNDAAG 94 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEESCCTT
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHh-hc-cccchhhhhHHhh
Confidence 45556788899999999999999999999999998875 359999999999999999988776 32 4679999999999
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHH
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE 321 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 321 (351)
+. ++++||+|++..+++|++|+..++++++++|||||++++.++........ ......+ .......+.+..++.
T Consensus 95 ~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~ 168 (245)
T d1nkva_ 95 YV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT----EEIAQAC-GVSSTSDFLTLPGLV 168 (245)
T ss_dssp CC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS----HHHHHTT-TCSCGGGSCCHHHHH
T ss_pred cc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCCh----HHHHHHh-ccCCCcccCCHHHHH
Confidence 74 67899999999999999999999999999999999999998876433221 1122221 122234577899999
Q ss_pred HHHHHCCCeEEEEE
Q 018740 322 DLCRACGLVDFKCT 335 (351)
Q Consensus 322 ~ll~~aGf~~v~~~ 335 (351)
.+++++||.++...
T Consensus 169 ~~~~~aG~~~v~~~ 182 (245)
T d1nkva_ 169 GAFDDLGYDVVEMV 182 (245)
T ss_dssp HHHHTTTBCCCEEE
T ss_pred HHHHHcCCEEEEEE
Confidence 99999999887644
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.89 E-value=1.5e-23 Score=182.54 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=117.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
.+++|||||||+|.++..+++.+. +|+|+|+|+++++.|+++. ..++.++.+|++++++ +++||+|++.+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~~~~ 89 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIVLTH 89 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEEEES
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccccccc
Confidence 466899999999999999999886 8999999999999999863 3579999999998875 57899999999
Q ss_pred ccccCCChHHHHHHHH-hcccCCcEEEEEeeccCCCCCcchHHHHHHH---------HHhhccCCccCCCHHHHHHHHHH
Q 018740 257 AIHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ---------NMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~-~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
+|||++||..+|.+++ ++|+|||.+++.+|+..... ........ .......|.+.++.+++++++++
T Consensus 90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~ 166 (225)
T d2p7ia1 90 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS---RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 166 (225)
T ss_dssp CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHH---HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHH---HHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence 9999999999999998 89999999999998754321 00000000 00012347788999999999999
Q ss_pred CCCeEEEE
Q 018740 327 CGLVDFKC 334 (351)
Q Consensus 327 aGf~~v~~ 334 (351)
+||++++.
T Consensus 167 ~Gf~i~~~ 174 (225)
T d2p7ia1 167 AGLQVTYR 174 (225)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998763
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=4.7e-22 Score=172.88 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=124.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
.++.+|||+|||+|..+..+++. .+..+|+|+|+|+.|++.|+++++.. + ...++.+..+|+.+++ .+.+|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-~-~~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-H-SEIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS-C-CSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh-c-ccchhhhccchhhccc--cccceeeE
Confidence 34789999999999999999875 35679999999999999999988765 1 2456777888877665 56799999
Q ss_pred eccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh---c------------cCCccCCC
Q 018740 254 AGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I------------SGSYTFLS 316 (351)
Q Consensus 254 ~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~s 316 (351)
+..++||++ |+..+|++++++|||||.+++.++..................+.. . ......++
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 999999985 677999999999999999999887653321111111111111100 0 01124578
Q ss_pred HHHHHHHHHHCCCeEEEEE-ecCeEEEEEEec
Q 018740 317 EREIEDLCRACGLVDFKCT-RNRGFVMFTATK 347 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v~~~-~~g~~~~~~a~k 347 (351)
.+++.++|+++||+.++.+ ....+..++|+|
T Consensus 194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 9999999999999998864 344566777776
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1e-22 Score=176.87 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=120.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++... ...+++++++|++++++++++||+|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~---~~~~~~f~~~d~~~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEE---GKRVRNYFCCGLQDFTPEPDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGG---GGGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccc---cccccccccccccccccccccccccc
Confidence 345567999999999999998876653 48999999999999999988765 14678999999999998899999999
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 254 AGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 254 ~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
+.++++|++++. .++++++++|+|||.+++.++........ ....+...++.+++.++++++||++
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL------------DDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE------------ETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred cccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc------------ccCCceeeCCHHHHHHHHHHcCCEE
Confidence 999999998874 79999999999999999998765432111 1112344568999999999999999
Q ss_pred EEEEe
Q 018740 332 FKCTR 336 (351)
Q Consensus 332 v~~~~ 336 (351)
++...
T Consensus 201 i~~~~ 205 (222)
T d2ex4a1 201 LAEER 205 (222)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88554
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.87 E-value=5.8e-21 Score=168.95 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=130.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+...+...+.++|||||||+|.++..+++++|..+++++|+ +.+++.+++++... +. ..+++++.+|+.+..
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~-~~rv~~~~~D~~~~~-- 143 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-GL-SDRVDVVEGDFFEPL-- 143 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-TC-TTTEEEEECCTTSCC--
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh-hc-ccchhhccccchhhc--
Confidence 34566666766778999999999999999999999899999998 67899999988776 32 578999999986532
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
..+||+|++.++|||++|+. .+|++++++|||||.+++.+...............+...+.... ....++.+++.++
T Consensus 144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~-~g~~rt~~e~~~l 222 (253)
T d1tw3a2 144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL-GGALRTREKWDGL 222 (253)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH-SCCCCBHHHHHHH
T ss_pred ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhC-CCcCCCHHHHHHH
Confidence 35699999999999998775 78999999999999999987654322122222111111111111 2245689999999
Q ss_pred HHHCCCeEEEEEec-----CeEEEEEEecC
Q 018740 324 CRACGLVDFKCTRN-----RGFVMFTATKP 348 (351)
Q Consensus 324 l~~aGf~~v~~~~~-----g~~~~~~a~kp 348 (351)
++++||+++++... +....++..+|
T Consensus 223 l~~AGf~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 223 AASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp HHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence 99999998875432 23344555655
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=7.3e-22 Score=174.79 Aligned_cols=153 Identities=12% Similarity=0.060 Sum_probs=122.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+++.+...+..+|||+|||+|.++..++..+. .+|+++|+|+.|++.|++++.. ..+++++++|++++++++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~~ 156 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCS
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccccccCC
Confidence 3445556666778999999999999998776643 3899999999999999988654 367899999999999889
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 324 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll 324 (351)
++||+|++.++++|++|++ .+|++++++|+|||.+++.++......... ....+..+++.+++++++
T Consensus 157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-----------d~~d~~~~rs~~~~~~l~ 225 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-----------DKEDSSLTRSDIHYKRLF 225 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-----------ETTTTEEEBCHHHHHHHH
T ss_pred CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-----------cccCCceeCCHHHHHHHH
Confidence 9999999999999998875 889999999999999999887653221110 011133456899999999
Q ss_pred HHCCCeEEEEEe
Q 018740 325 RACGLVDFKCTR 336 (351)
Q Consensus 325 ~~aGf~~v~~~~ 336 (351)
+++||++++...
T Consensus 226 ~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 226 NESGVRVVKEAF 237 (254)
T ss_dssp HHHTCCEEEEEE
T ss_pred HHcCCEEEEEEe
Confidence 999999988554
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.86 E-value=6.8e-21 Score=171.05 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=122.4
Q ss_pred HHHHHhcc-CCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 166 FELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 166 ~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
.+.+...+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.... ..++++.++|+.+++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTCC
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----ccccccccccccccc
Confidence 34444433 455678999999999999999988754 358999999999999999998776 458999999999998
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc---------CCCC-CcchHHHHHHHHHh---hccC
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV---------DGPF-NLIPFSRLLRQNMM---QISG 310 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~---------~~~~-~~~~~~~~~~~~~~---~~~~ 310 (351)
++ ++||+|++.+++||++||..+|+++.++|||||.+++.++.. ++.. .....+..+...+. ...+
T Consensus 91 ~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (281)
T d2gh1a1 91 LN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG 169 (281)
T ss_dssp CS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTC
T ss_pred cc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcC
Confidence 75 579999999999999999999999999999999999988752 1110 00000111111111 1111
Q ss_pred CccCCCHHHHHHHHHHCCCeEEEEEecC
Q 018740 311 SYTFLSEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 311 ~~~~~s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
....-..++..+++++||+.+++....
T Consensus 170 -~~~~i~~~l~~~l~eaGf~~i~~~~~~ 196 (281)
T d2gh1a1 170 -KDGNIGMKIPIYLSELGVKNIECRVSD 196 (281)
T ss_dssp -CCTTGGGTHHHHHHHTTCEEEEEEECC
T ss_pred -CCCCHHHHHHHHHHHcCCeEEEEEEec
Confidence 111123468889999999998865444
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=2.3e-21 Score=167.90 Aligned_cols=113 Identities=28% Similarity=0.492 Sum_probs=100.2
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+.++++ +..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++... ...+.++.+|+.++|++++
T Consensus 30 ~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~~~ 101 (226)
T d1ve3a1 30 LLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDK 101 (226)
T ss_dssp HHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTT
T ss_pred HHHHhcC--CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc----cccccccccccccccccCc
Confidence 4445554 467999999999999999999876 9999999999999999988776 5678899999999999999
Q ss_pred ceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+||+|++..+++|++ |+.++|+++.++|||||.+++..++.
T Consensus 102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 999999999999997 56689999999999999999987653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.85 E-value=2e-20 Score=165.56 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=123.3
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.+.++.....+|||||||+|.++..+++++|..+++++|+ +.+++.++++++.. +. ..++.++.+|+.. +.+
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-~~-~~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-GL-ADRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-TC-TTTEEEEECCTTS-CCS-
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc-CC-cceeeeeeeeccc-ccc-
Confidence 4555556666678999999999999999999999899999998 78999999988775 32 5789999999875 333
Q ss_pred CceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHH-HhhccCCccCCCHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~l 323 (351)
..||+|++.++|||+++.. .+|++++++|||||++++.+..........+........ +.... ....++.++++++
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~-~g~~rt~~e~~~l 224 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM-GGRVRTRDEVVDL 224 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHH-SCCCCCHHHHHHH
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhC-CCccCCHHHHHHH
Confidence 4599999999999998764 779999999999999999886532222222222222111 11111 2345689999999
Q ss_pred HHHCCCeEEEEEec
Q 018740 324 CRACGLVDFKCTRN 337 (351)
Q Consensus 324 l~~aGf~~v~~~~~ 337 (351)
++++||++++....
T Consensus 225 l~~AGf~~~~~~~~ 238 (256)
T d1qzza2 225 AGSAGLALASERTS 238 (256)
T ss_dssp HHTTTEEEEEEEEE
T ss_pred HHHCCCceeEEEEe
Confidence 99999999986654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=3.6e-20 Score=157.63 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=107.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++++|||||||+|..+..+++++. +|+|+|+|+.|++.++++.... ..+++.+...|+..+++ +++||+|++..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~~fD~I~~~~ 103 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAE---GLDNLQTDLVDLNTLTF-DGEYDFILSTV 103 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT---TCTTEEEEECCTTTCCC-CCCEEEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhc---cccchhhhheecccccc-cccccEEEEee
Confidence 456999999999999999999987 9999999999999999988765 24689999999998875 68899999999
Q ss_pred ccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 257 vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
++||++++. ++++++.++|+|||++++.+...... .+ ........++..++.+++ .||.++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~~----------~~~~~~~~~~~~el~~~~--~~~~i~~ 167 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPD---FP----------CTVGFPFAFKEGELRRYY--EGWDMLK 167 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC----------------------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCcc---CC----------CCCCCCCccCHHHHHHHh--CCCeEEE
Confidence 999997654 79999999999999999987653211 00 001123445667787776 5787654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=3.6e-20 Score=165.71 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=126.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|++++... |. ..++.+...|...+
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~-~l-~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI-DT-NRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS-CC-SSCEEEEESCGGGC---
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhh-cc-ccchhhhhhhhhhh---
Confidence 5678888889999999999999999999988774 349999999999999999998876 33 45677777777665
Q ss_pred CCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCc----chH---HHHHHHHHhh-ccCCccCC
Q 018740 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL----IPF---SRLLRQNMMQ-ISGSYTFL 315 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~----~~~---~~~~~~~~~~-~~~~~~~~ 315 (351)
+++||.|++..+++|+.++ ..++++++++|||||++++.+......... ... .......+.. ..+.....
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 4689999999999999766 789999999999999999987654321100 000 0011111111 12233467
Q ss_pred CHHHHHHHHHHCCCeEEEEEecC
Q 018740 316 SEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 316 s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
+..++.++++++||++++....+
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECH
T ss_pred chHhhhhhHHhhccccceeeecc
Confidence 99999999999999988765543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=9.7e-20 Score=163.42 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=127.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.++..++.+|||||||.|.++..+++.. +++|+|+++|+.+++.+++++... |. ..++.+...|.. +.
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~-~l-~~~v~~~~~d~~---~~ 123 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEV-DS-PRRKEVRIQGWE---EF 123 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHS-CC-SSCEEEEECCGG---GC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhh-cc-chhhhhhhhccc---cc
Confidence 5678888899999999999999999999988764 359999999999999999998876 33 456777777753 45
Q ss_pred CCceeeEEeccccccCCCh---------HHHHHHHHhcccCCcEEEEEeeccCCCCC------cchH-HHHHHHHHhh-c
Q 018740 246 SSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFN------LIPF-SRLLRQNMMQ-I 308 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~---------~~~l~~i~~~LkpgG~li~~~~~~~~~~~------~~~~-~~~~~~~~~~-~ 308 (351)
+++||.|++..+++|++++ ..+++++.++|||||++++.+........ ..+. ......++.. .
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 7899999999999999874 68999999999999999998876421100 0000 0111111111 1
Q ss_pred cCCccCCCHHHHHHHHHHCCCeEEEEEecCe
Q 018740 309 SGSYTFLSEREIEDLCRACGLVDFKCTRNRG 339 (351)
Q Consensus 309 ~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~ 339 (351)
.+.....+..++..+++++||++.+....+.
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeeccc
Confidence 2234577899999999999999988766543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=6.8e-20 Score=161.13 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG- 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~- 255 (351)
++++|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++... ..+++++++|+.++++ +++||+|+|.
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~i~~~~ 109 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI-NRKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcccccccc----Cccceeeccchhhhcc-cccccccceee
Confidence 357999999999999999999987 9999999999999999998776 5689999999999876 4689999985
Q ss_pred cccccCCCh---HHHHHHHHhcccCCcEEEEEeec
Q 018740 256 AAIHCWSSP---STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~---~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++++|+.++ ..+|++++++|+|||.+++....
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 688888755 47899999999999999986553
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.7e-20 Score=164.43 Aligned_cols=101 Identities=29% Similarity=0.366 Sum_probs=90.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec-
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG- 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~- 255 (351)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.. ..++.+|++++|+++++||+|++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~~ 110 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLALG 110 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeeec
Confidence 467999999999999999999876 99999999999999998622 226789999999999999999985
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.++||++|+..+|+++.++|||||++++.+++.
T Consensus 111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred chhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 689999999999999999999999999998764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=4.6e-19 Score=158.48 Aligned_cols=168 Identities=16% Similarity=0.115 Sum_probs=129.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
..+.+.+.++..++.+|||||||.|.++..+++.. +++|+|+++|+.+++.|++++++. |. ..++.+..+|...++
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~-g~-~~~v~~~~~d~~~~~- 125 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS-EN-LRSKRVLLAGWEQFD- 125 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC-CC-CSCEEEEESCGGGCC-
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhh-hh-hhhhHHHHhhhhccc-
Confidence 35778888999999999999999999999888775 469999999999999999998776 33 678999999998775
Q ss_pred CCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCC-------CcchHHHHHHHHHhh-ccCCccC
Q 018740 245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPF-------NLIPFSRLLRQNMMQ-ISGSYTF 314 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~ 314 (351)
++||.|++..+++|+... ..+++++.++|||||++++.+.....+. +...........+.. ..+....
T Consensus 126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l 203 (285)
T d1kpga_ 126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 203 (285)
T ss_dssp --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence 689999999999999644 7999999999999999999877532110 000111111111111 1223456
Q ss_pred CCHHHHHHHHHHCCCeEEEEEecC
Q 018740 315 LSEREIEDLCRACGLVDFKCTRNR 338 (351)
Q Consensus 315 ~s~~~l~~ll~~aGf~~v~~~~~g 338 (351)
.+..++..+++++||.+++....+
T Consensus 204 Psl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 204 PSIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CChhhHHHHHHHhchhhcccccch
Confidence 789999999999999998876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.7e-19 Score=160.29 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=111.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CC--CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe--EEEEecCCC------
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKS----GL--FSLVVALDYSENMLKQCYEFVQQESNFPKENF--LLVRADISR------ 241 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~----~~--~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i--~~~~~d~~~------ 241 (351)
.+..+|||||||+|.++..+++. ++ ...++|+|+|+.|++.++++++...+ ..++ .+...+++.
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN--LENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS--CTTEEEEEECSCHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc--cccccccchhhhhhhhcchhc
Confidence 34458999999999988777553 22 34689999999999999998876422 2333 334444332
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhh--ccCCccCCCHHH
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSERE 319 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ 319 (351)
.+.++++||+|++.+++||++|+..+|++++++|+|||.+++..+..+. .+...+...... ...+..+++.++
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-----GWDKLWKKYGSRFPQDDLCQYITSDD 191 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-----HHHHHHHHHGGGSCCCTTSCCCCHHH
T ss_pred ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc-----hHHHHHHHHHHhcCCCcccccCCHHH
Confidence 3456889999999999999999999999999999999999998876432 222222222222 233556789999
Q ss_pred HHHHHHHCCCeEEEE
Q 018740 320 IEDLCRACGLVDFKC 334 (351)
Q Consensus 320 l~~ll~~aGf~~v~~ 334 (351)
+.++|++.||..+..
T Consensus 192 ~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 192 LTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 999999999986553
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=2.1e-19 Score=158.16 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=96.3
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCc
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~ 248 (351)
+.......+.++|||||||+|..+..+++.+. +|+|+|+|+.|++.|++++... ..++.++++|+++++++ ++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~----~~~i~~~~~d~~~l~~~-~~ 105 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NE 105 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SC
T ss_pred HHHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccc----cccchheehhhhhcccc-cc
Confidence 34444555677999999999999999999886 9999999999999999998876 56899999999999976 58
Q ss_pred eeeEEec-cccccCC--ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 249 IDAVHAG-AAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 249 fD~V~~~-~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
||+|+|. .+++|+. ++..+|++++++|||||++++..++
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 9999986 5778874 4568999999999999999987654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=5.3e-19 Score=155.38 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=117.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
-.++.+..... ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++++.+ ..++.+.++|+...
T Consensus 109 l~l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n----~~~~~~~~~d~~~~- 179 (254)
T d2nxca1 109 LALKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN----GVRPRFLEGSLEAA- 179 (254)
T ss_dssp HHHHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT----TCCCEEEESCHHHH-
T ss_pred HHHHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHc----CCceeEEecccccc-
Confidence 34555555543 588999999999999999998876 8999999999999999998887 45678899987653
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHH
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 323 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 323 (351)
++.++||+|+++...+. ...++.++.++|||||+++++....+ ..+.+.+.
T Consensus 180 ~~~~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil~~--------------------------~~~~v~~~ 230 (254)
T d2nxca1 180 LPFGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILKD--------------------------RAPLVREA 230 (254)
T ss_dssp GGGCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHH
T ss_pred ccccccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEEecchh--------------------------hHHHHHHH
Confidence 45689999998765543 45778999999999999999754321 24678899
Q ss_pred HHHCCCeEEEEEecCeEEEEEEec
Q 018740 324 CRACGLVDFKCTRNRGFVMFTATK 347 (351)
Q Consensus 324 l~~aGf~~v~~~~~g~~~~~~a~k 347 (351)
++++||.+++....+.|..+..+|
T Consensus 231 ~~~~Gf~~~~~~~~~~Wv~l~~~r 254 (254)
T d2nxca1 231 MAGAGFRPLEEAAEGEWVLLAYGR 254 (254)
T ss_dssp HHHTTCEEEEEEEETTEEEEEEEC
T ss_pred HHHCCCEEEEEEEECCEEEEEEeC
Confidence 999999999988877777777765
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5e-20 Score=162.77 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCe-----------------------
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF----------------------- 232 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i----------------------- 232 (351)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++... ....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKE----PGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTC----TTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhc----cccchhhhHHHHHHHhccccchHHHHH
Confidence 4567999999999998877766652 47999999999999999987654 1111
Q ss_pred --------EEEEec----CCCCCCCCCceeeEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 233 --------LLVRAD----ISRLPFASSSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 233 --------~~~~~d----~~~lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
.....+ ....+++.++||+|++.+++||+. ++..+++++.++|||||.+++.++........
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-- 202 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-- 202 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE--
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee--
Confidence 111111 122356788999999999999996 45688999999999999999998865432100
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
.....+..+++.++++++|+++||++++.
T Consensus 203 ---------~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 203 ---------GKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp ---------TTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ---------ccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 01122456789999999999999998775
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.1e-18 Score=150.01 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=119.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC--------------CCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP 228 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------g~~ 228 (351)
..+.+.+...+...++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.|+++..... ...
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 44556677777777889999999999999999999987 99999999999999998754310 001
Q ss_pred CCCeEEEEecCCCCC-CCCCceeeEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHH
Q 018740 229 KENFLLVRADISRLP-FASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM 305 (351)
Q Consensus 229 ~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 305 (351)
..+++++++|+..++ ...+.||+|+...+++|++ +....++++.++|||||.+++.+...+...
T Consensus 109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~------------- 175 (229)
T d2bzga1 109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK------------- 175 (229)
T ss_dssp TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT-------------
T ss_pred CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC-------------
Confidence 357999999998874 5578999999999999995 446889999999999999999887754211
Q ss_pred hhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 306 MQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 306 ~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
..+.....+.+++.+++.. +|.+
T Consensus 176 --~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 176 --HPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp --CCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred --CCCCCCCCCHHHHHHHhcC-CCEE
Confidence 1112345789999999965 6654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=4.7e-18 Score=147.34 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=121.6
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCCCcee
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID 250 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~~~fD 250 (351)
.+...++.+|||+|||+|..+..+++.++...|+|+|+|+.|++.+++++... +++..+.+|....+ +.+..+|
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccce
Confidence 45577899999999999999999999988889999999999999999886553 78888988887653 4567789
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCe
Q 018740 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 330 (351)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~ 330 (351)
++++...++|..++..++.++.+.|||||.+++......... ..+... ..++..+.|+++||+
T Consensus 144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~-~~~~~~----------------~~~e~~~~L~~aGF~ 206 (230)
T d1g8sa_ 144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV-TKDPKE----------------IFKEQKEILEAGGFK 206 (230)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCS-SSCHHH----------------HHHHHHHHHHHHTEE
T ss_pred eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCC-CCCHHH----------------HHHHHHHHHHHcCCE
Confidence 988888999999999999999999999999998876543211 111100 125678899999999
Q ss_pred EEEEEecC----eEEEEEEec
Q 018740 331 DFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 331 ~v~~~~~g----~~~~~~a~k 347 (351)
+++..... .+.++++..
T Consensus 207 ive~idL~py~~~H~~vvg~y 227 (230)
T d1g8sa_ 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEecCCCCcCCeEEEEEEe
Confidence 99977643 256666643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=5.7e-18 Score=143.40 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=101.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
.+.+.+.+...++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.++++++.. +....++++..+|+.+ +++
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~-~l~~~~i~~~~~d~~~-~~~ 116 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT-TCTTSCEEEEECSTTT-TCT
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHh-CCccceEEEEEcchhh-hhc
Confidence 35677778888899999999999999999999887 9999999999999999998876 4445679999999977 556
Q ss_pred CCceeeEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~-~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+++||+|+++..+|+..+. ..+++++.++|+|||.+++...
T Consensus 117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 8899999999998876654 5789999999999999988654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.76 E-value=2.1e-18 Score=145.70 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=110.7
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC---------CCCCCeEEEEecC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------FPKENFLLVRADI 239 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g---------~~~~~i~~~~~d~ 239 (351)
....+...++.+|||+|||+|..+..|+++|. +|+|+|+|+.|++.|++++..... .....+.++++|+
T Consensus 12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 12 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 34446677899999999999999999999987 999999999999999998754310 0134567899999
Q ss_pred CCCCC-CCCceeeEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCC
Q 018740 240 SRLPF-ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS 316 (351)
Q Consensus 240 ~~lp~-~~~~fD~V~~~~vl~h~~d--~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 316 (351)
..++. ....||+|++..+++|+.+ ....+++++++|||||.+++........... ......+
T Consensus 90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~---------------~p~~~~~ 154 (201)
T d1pjza_ 90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE---------------GPPFSVP 154 (201)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS---------------SCCCCCC
T ss_pred cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC---------------CccccCC
Confidence 88763 3468999999999999975 4588999999999999998877664322111 1223457
Q ss_pred HHHHHHHHHHCCCeEE
Q 018740 317 EREIEDLCRACGLVDF 332 (351)
Q Consensus 317 ~~~l~~ll~~aGf~~v 332 (351)
.+++++++. .+|.+.
T Consensus 155 ~~el~~l~~-~~~~i~ 169 (201)
T d1pjza_ 155 QTWLHRVMS-GNWEVT 169 (201)
T ss_dssp HHHHHHTSC-SSEEEE
T ss_pred HHHHHHHhC-CCcEEE
Confidence 777777664 466543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.76 E-value=9e-18 Score=141.17 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=102.6
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
.++....+...+.+.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++.. |. .++++++++|+.+
T Consensus 18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~-gl-~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRH-GL-GDNVTLMEGDAPE 93 (186)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT-TC-CTTEEEEESCHHH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHc-CC-CcceEEEECchhh
Confidence 345567788888999999999999999999999998765 9999999999999999999887 32 4699999999988
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.....||+|++....++ ...+++++.+.|||||++++....
T Consensus 94 ~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred cccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEeec
Confidence 8777889999999876654 567899999999999999886543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.76 E-value=2.9e-18 Score=151.22 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=92.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC-CCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~ 255 (351)
++.+|||||||+|..+..+++.+. .+|+|+|+|+.|++.|++++... + ...++.+.++|+...++ .+++||+|+|.
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~-~-~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNM-K-RRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTS-C-CSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhc-C-CCcceEEEEcchhhhcccccccceEEEEc
Confidence 478999999999999999988763 48999999999999999988765 1 14579999999987765 46789999999
Q ss_pred cccccCCCh----HHHHHHHHhcccCCcEEEEEeecc
Q 018740 256 AAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 256 ~vl~h~~d~----~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+++||+.++ ..+++++.++|||||++++.+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999998543 478999999999999999988764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1.1e-17 Score=147.16 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=108.7
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~ 239 (351)
-+......+...++..|+.+|||+|||+|.++..|++. ++.++|+++|+++++++.|++++....+....++.+..+|+
T Consensus 80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 34556778889999999999999999999999999987 78889999999999999999988764233468999999999
Q ss_pred CCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 240 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+.++++++||.|++ |+++|..++.++.++|||||.+++..|+.
T Consensus 160 ~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 160 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 998888999999985 78999999999999999999999877763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=2.2e-17 Score=144.28 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=94.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+...++..++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++.... ...++++..+|+.+. +
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~-~ 150 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADF-I 150 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTC-C
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeecc-c
Confidence 456778888899999999999999999999986 677799999999999999999988751 257899999999876 4
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+++.||.|++ ++++|..++.++.++|||||++++..|+
T Consensus 151 ~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 151 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence 5788999985 5789999999999999999999987664
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.7e-18 Score=150.27 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=104.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCC------------------------
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE------------------------ 230 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~------------------------ 230 (351)
...+.+|||||||+|.+....+... ..+|+|+|+|+.|++.+++++....+. .+
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGA-FNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTC-CCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCccc-ccchhhhhhhhhhccccchhhhhHHH
Confidence 4457899999999998765444333 238999999999999999887543110 00
Q ss_pred ----CeEEEEecCCC------CCCCCCceeeEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEeeccCCCCCcch
Q 018740 231 ----NFLLVRADISR------LPFASSSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (351)
Q Consensus 231 ----~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~ 296 (351)
......+|+.. .+...++||+|++.++|||+. ++..++++++++|||||.|++.++........
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~-- 207 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA-- 207 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE--
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc--
Confidence 11234455533 234467899999999999985 45689999999999999999988765321100
Q ss_pred HHHHHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 297 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
....-...+++.++++++++++||++++
T Consensus 208 ---------~~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 208 ---------GEARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp ---------TTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ---------CCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 0011123468999999999999999876
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-18 Score=148.73 Aligned_cols=112 Identities=9% Similarity=0.199 Sum_probs=92.6
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC--CC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF 244 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--p~ 244 (351)
+.+...+. .++++|||||||+|..+..+++..+ .+++|+|+|+.+++.|++++... ..++.++..++... ++
T Consensus 44 ~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 44 HALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTL 117 (229)
T ss_dssp HHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGS
T ss_pred HHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccc
Confidence 34444444 3578999999999999999998763 48999999999999999998776 56788888776543 56
Q ss_pred CCCceeeEE-----eccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 245 ASSSIDAVH-----AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 245 ~~~~fD~V~-----~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++++||.|+ +...++|+.++..++++++|+|||||+|++.
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 688899887 5678899999999999999999999999874
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.70 E-value=8.1e-17 Score=140.67 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=120.4
Q ss_pred HHHHhccC-CCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+.+.+... .....+|||||||+|.++..++++.|..+++.+|+ |..++.+. ...+++++.+|+.+ +.+
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~ri~~~~gd~~~-~~p 138 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP---------PLSGIEHVGGDMFA-SVP 138 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CCTTEEEEECCTTT-CCC
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC---------CCCCeEEecCCccc-ccc
Confidence 44455444 34567999999999999999999999999999998 54443222 25899999999865 233
Q ss_pred CCceeeEEeccccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCcchH---HHHHHHHHhhccCCccCCCHHHH
Q 018740 246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
..|++++.++||+++|.. .+|+++++.|+|||.+++.+...+........ ...+...+.... .-...|.+++
T Consensus 139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~ 215 (244)
T d1fp1d2 139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQY 215 (244)
T ss_dssp --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHH
T ss_pred --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHH
Confidence 459999999999998765 88999999999999999998875432221111 111111111111 2234689999
Q ss_pred HHHHHHCCCeEEEEEe--cCeEEEEEEec
Q 018740 321 EDLCRACGLVDFKCTR--NRGFVMFTATK 347 (351)
Q Consensus 321 ~~ll~~aGf~~v~~~~--~g~~~~~~a~k 347 (351)
.++++++||+.+++.. .+.+.++-++|
T Consensus 216 ~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 216 EKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp HHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 9999999999998643 35667777776
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.3e-17 Score=150.10 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=91.8
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC--CCCeEEEEecCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADISR 241 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~--~~~i~~~~~d~~~ 241 (351)
...+.+...++..++.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+++..... .. .....+..+++..
T Consensus 43 ~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 43 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLT 119 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccccc
Confidence 3345556666666678999999999999999999986 99999999999999999876541 00 1123445555533
Q ss_pred CC---CCCCceeeEEec-cccccCCCh-------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 242 LP---FASSSIDAVHAG-AAIHCWSSP-------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 242 lp---~~~~~fD~V~~~-~vl~h~~d~-------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
++ ...++||+|+|. .+++|++++ ..+|++++++|||||+|++...+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 21 135679999975 589999764 479999999999999999977643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=2.8e-16 Score=134.07 Aligned_cols=111 Identities=18% Similarity=0.087 Sum_probs=93.4
Q ss_pred ccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceee
Q 018740 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~ 251 (351)
.+...|+.+|||+|||+|..+..+++..+..+|+|+|+|+.|++.+++++... .++.++.+|+...+.....+|.
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCC
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccce
Confidence 35677899999999999999999999877779999999999999999987764 6999999999887655555544
Q ss_pred EE-eccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VH-AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~-~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+. ..+.+.|..++..+++++.++|||||.+++....
T Consensus 126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 43 3355777788889999999999999999987754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=2.6e-16 Score=134.84 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=96.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
...+.+.+...++.+|||||||+|+++..+++. ++...|+++|+++.+++.|+++++.. ...++.++.+|..+.++
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---cccccccccCchHHccc
Confidence 456677888889999999999999999999876 55678999999999999999998876 35789999999988777
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.+++||+|++..+++|+++ ++.++|||||++++..
T Consensus 141 ~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred cccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 7889999999999999864 4678899999998844
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=5.8e-16 Score=136.76 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=112.6
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCC
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~ 240 (351)
+......+...++..++.+|||+|||+|.++..+++. ++.++|+++|+++.+++.|++++... +. ..++.+...|+.
T Consensus 88 ypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-g~-~~~v~~~~~d~~ 165 (266)
T d1o54a_ 88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-GL-IERVTIKVRDIS 165 (266)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-TC-GGGEEEECCCGG
T ss_pred chHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-cc-ccCcEEEecccc
Confidence 3456678889999999999999999999999999887 56779999999999999999998876 22 467888888864
Q ss_pred CCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHH
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI 320 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 320 (351)
. .+....||.|+ +|+++|..+++++.++|||||.+++..|+.+ ..+.+
T Consensus 166 ~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~--------------------------Qv~~~ 213 (266)
T d1o54a_ 166 E-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN--------------------------QVQET 213 (266)
T ss_dssp G-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHH
T ss_pred c-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc--------------------------HHHHH
Confidence 3 34567789886 6899999999999999999999998776521 11356
Q ss_pred HHHHHHCCCeEEE
Q 018740 321 EDLCRACGLVDFK 333 (351)
Q Consensus 321 ~~ll~~aGf~~v~ 333 (351)
.+.|++.||..++
T Consensus 214 ~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 214 LKKLQELPFIRIE 226 (266)
T ss_dssp HHHHHHSSEEEEE
T ss_pred HHHHHHCCceeEE
Confidence 6777888997766
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=3.2e-15 Score=128.79 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=111.5
Q ss_pred hccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---CCCC
Q 018740 171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS 246 (351)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---p~~~ 246 (351)
+.+...+|.+|||+|||+|.++..+++. |+.++|+|+|+|+.|++.++++++.. .++..+..|.... +...
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~ 141 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALV 141 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTC
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCcccccccc
Confidence 3456788999999999999999999987 67789999999999999999987654 6788888887553 3345
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHH
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA 326 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~ 326 (351)
..+|+|++ .+.|..++..+++++.+.|||||.+++............+. .. ..+...+ .+
T Consensus 142 ~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~--~v---------------~~~v~~l-~~ 201 (227)
T d1g8aa_ 142 PKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPE--QV---------------FREVERE-LS 201 (227)
T ss_dssp CCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHH--HH---------------HHHHHHH-HH
T ss_pred cceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHH--HH---------------HHHHHHH-HH
Confidence 67888875 45666778899999999999999999876543211111110 00 1233344 45
Q ss_pred CCCeEEEEEecC----eEEEEEEec
Q 018740 327 CGLVDFKCTRNR----GFVMFTATK 347 (351)
Q Consensus 327 aGf~~v~~~~~g----~~~~~~a~k 347 (351)
.||++++..... .+.++.++|
T Consensus 202 ~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 202 EYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp TTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred cCCEEEEEEcCCCCCCceEEEEEEe
Confidence 699999876543 367888887
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=5.8e-16 Score=131.42 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=92.5
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 255 (351)
...|||||||+|.++..+++..|+..++|+|+++.++..|.+++... +..|+.++.+|+..+. ++++++|.|++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~---~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH---hccCchhcccchhhhhcccCchhhhccccc
Confidence 44899999999999999999999999999999999999999998876 2579999999998775 778999999988
Q ss_pred cccccCCCh--------HHHHHHHHhcccCCcEEEEEe
Q 018740 256 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 256 ~vl~h~~d~--------~~~l~~i~~~LkpgG~li~~~ 285 (351)
+...|.... ..+|++++++|||||.|.+.|
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 876665433 478999999999999999876
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-15 Score=138.29 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC------CCCCCCeEEEEe
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKENFLLVRA 237 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------g~~~~~i~~~~~ 237 (351)
.....+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++.....+ |....++.++++
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 34566777788888999999999999999999888766689999999999999988665421 344678999999
Q ss_pred cCCCCCCCCCce--eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 238 DISRLPFASSSI--DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 238 d~~~lp~~~~~f--D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+.++++.+..+ |+|++ +.+.|.+++...|.++.+.|||||.++...+
T Consensus 218 d~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 999988766655 55555 5566778888999999999999999987654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.59 E-value=1.1e-14 Score=126.93 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=111.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
..+|||||||+|.++..+++++|..+++..|. +..++.+. ..++++++.+|+.+.+ + .+|++++.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~rv~~~~gD~f~~~-p--~aD~~~l~~v 147 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---------GSNNLTYVGGDMFTSI-P--NADAVLLKYI 147 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CBTTEEEEECCTTTCC-C--CCSEEEEESC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---------ccCceEEEecCcccCC-C--CCcEEEEEee
Confidence 46899999999999999999999999999998 54544332 1589999999997632 2 5799999999
Q ss_pred cccCCChH--HHHHHHHhcccCC---cEEEEEeeccCCCCCcchHHHH---HHHHHhhccCCccCCCHHHHHHHHHHCCC
Q 018740 258 IHCWSSPS--TGVAEISRVLRPG---GVFVGTTYIVDGPFNLIPFSRL---LRQNMMQISGSYTFLSEREIEDLCRACGL 329 (351)
Q Consensus 258 l~h~~d~~--~~l~~i~~~Lkpg---G~li~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 329 (351)
||+++|.. ++|+++++.|+|| |++++.+...+..... +.... ........ ..-...+.++++++++++||
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~-~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf 225 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDE-NQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGF 225 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSC-HHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTC
T ss_pred cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCC-chHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCC
Confidence 99999875 8899999999998 7788877765432221 11111 11111111 12345689999999999999
Q ss_pred eEEEEEec-CeEEEEE
Q 018740 330 VDFKCTRN-RGFVMFT 344 (351)
Q Consensus 330 ~~v~~~~~-g~~~~~~ 344 (351)
+++++... +...++.
T Consensus 226 ~~~~i~~~~~~~svIE 241 (244)
T d1fp2a2 226 QHYKISPLTGFLSLIE 241 (244)
T ss_dssp CEEEEEEEETTEEEEE
T ss_pred ceEEEEECCCCeEEEE
Confidence 99996653 3344433
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.3e-15 Score=126.92 Aligned_cols=114 Identities=22% Similarity=0.309 Sum_probs=93.2
Q ss_pred HHHHhcc--CCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCCeEEEEecCCC
Q 018740 167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISR 241 (351)
Q Consensus 167 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~i~~~~~d~~~ 241 (351)
..+.+.| ...++.+|||||||+|+.+..+++. ++..+|+++|+++++++.|+++++... +....++.+..+|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 3455555 4567899999999999999988875 566799999999999999999887541 0114688999999988
Q ss_pred CCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 242 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.++++||+|++..+++++++ ++.+.|||||++++...
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 8777889999999999998753 47789999999998543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.58 E-value=1.4e-14 Score=122.77 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=89.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--CCCCceeeEEec
Q 018740 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (351)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 255 (351)
...|||||||+|.++..+++..|+..++|+|+++.++..|.+++... +..|+.++.+|+..+. +++.++|.|++.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~---~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~ 108 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 108 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh---ccccceeeecCHHHHhhhccCCceehhccc
Confidence 34899999999999999999999999999999999999999988876 2579999999998875 678899999865
Q ss_pred cccccCCCh--------HHHHHHHHhcccCCcEEEEEee
Q 018740 256 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 256 ~vl~h~~d~--------~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.-.+.... ..+|+.+.++|||||.+++.|-
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 443222111 5889999999999999998763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.1e-14 Score=131.60 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=99.1
Q ss_pred cHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhC--------CCCCCCe
Q 018740 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------NFPKENF 232 (351)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~--------g~~~~~i 232 (351)
+...+..+...++..++.+|||+|||+|.++..|++. ++.++|+++|+++.+++.|++++.... .....++
T Consensus 83 ypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv 162 (324)
T d2b25a1 83 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 162 (324)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred ccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence 3455678888899999999999999999999999987 677899999999999999999887531 1125789
Q ss_pred EEEEecCCCCC--CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 233 LLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 233 ~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+...|+.... +++..||.|+. ++++|..++.++.++|||||++++..|+.
T Consensus 163 ~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 163 DFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp EEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred eEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 99999997753 45678999985 57899999999999999999999877653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.56 E-value=1.2e-14 Score=124.78 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=90.2
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
..+.+.+...++.+|||||||+|+++..+++... +|+++|+++.+++.|++++.. ..++.++.+|........
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCGGG
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhhcchhh
Confidence 4567778888999999999999999999999875 999999999999999988664 479999999987654456
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++||+|++..+++++++ .+.+.|+|||+|++-
T Consensus 133 ~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 88999999999998853 456789999999874
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.54 E-value=2.4e-14 Score=124.95 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
...+|||||||+|.++..+++++|..+++++|+.+ .++.++ ..+++.++.+|+.+ +.+ ..|++++.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~---------~~~r~~~~~~d~~~-~~P--~ad~~~l~~ 147 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP---------SYPGVEHVGGDMFV-SIP--KADAVFMKW 147 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC---------CCTTEEEEECCTTT-CCC--CCSCEECSS
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc---------cCCceEEecccccc-cCC--CcceEEEEE
Confidence 35689999999999999999999999999999854 333222 25789999999865 333 258889999
Q ss_pred ccccCCChH--HHHHHHHhcccCCcEEEEEeeccCCCCCc--chHHHH-HHHHHhhccCCccCCCHHHHHHHHHHCCCeE
Q 018740 257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRL-LRQNMMQISGSYTFLSEREIEDLCRACGLVD 331 (351)
Q Consensus 257 vl~h~~d~~--~~l~~i~~~LkpgG~li~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 331 (351)
++|++++.. .+|+++++.|+|||.+++.+......... ...... +...+......-...+.++++++++++||+.
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 999998654 88999999999999999988765322111 111111 1111111111234468999999999999999
Q ss_pred EEEEe
Q 018740 332 FKCTR 336 (351)
Q Consensus 332 v~~~~ 336 (351)
++++.
T Consensus 228 vkv~~ 232 (243)
T d1kyza2 228 FKVHC 232 (243)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.8e-13 Score=118.50 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=111.9
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~ 244 (351)
+.+....... ..+.+|||+|||+|..+..++...|..+|+++|+|+.+++.|++++... + ..++.++.+|+.+ ++
T Consensus 97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~-~--~~~v~~~~~d~~~-~~ 171 (274)
T d2b3ta1 97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-A--IKNIHILQSDWFS-AL 171 (274)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-T--CCSEEEECCSTTG-GG
T ss_pred hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh-C--cccceeeeccccc-cc
Confidence 3444444443 3456899999999999999999999999999999999999999999887 2 3579999999876 34
Q ss_pred CCCceeeEEeccc-------------cccCCC------------hHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH
Q 018740 245 ASSSIDAVHAGAA-------------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (351)
Q Consensus 245 ~~~~fD~V~~~~v-------------l~h~~d------------~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (351)
++++||+|+++-- +.|-|. ...++.++.+.|+|||.+++...
T Consensus 172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig------------- 238 (274)
T d2b3ta1 172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------- 238 (274)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-------------
T ss_pred CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 5679999999722 222111 13678899999999999998421
Q ss_pred HHHHHHhhccCCccCCCHHHHHHHHHHCCCeEEEEE--ecCeEEEEEEe
Q 018740 300 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTAT 346 (351)
Q Consensus 300 ~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~--~~g~~~~~~a~ 346 (351)
+-..+.+.+++++.||..++.. ..|.-.++.|+
T Consensus 239 --------------~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 239 --------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp --------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred --------------chHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 1124678899999999866643 23555555554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=7.8e-14 Score=127.10 Aligned_cols=103 Identities=20% Similarity=0.317 Sum_probs=86.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++.+|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++..... + ...++.++.+|+.++++++++||+|++.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~-~-~~~~i~~i~~~~~~l~~~~~~~D~i~se 112 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELN-G-FSDKITLLRGKLEDVHLPFPKVDIIISE 112 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHT-T-CTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHh-C-ccccceEEEeehhhccCcccceeEEEEE
Confidence 3578999999999999999999874 4899999996 677888777665 2 2678999999999999999999999996
Q ss_pred cccccC---CChHHHHHHHHhcccCCcEEE
Q 018740 256 AAIHCW---SSPSTGVAEISRVLRPGGVFV 282 (351)
Q Consensus 256 ~vl~h~---~d~~~~l~~i~~~LkpgG~li 282 (351)
.+.+++ .....++.++.++|||||.++
T Consensus 113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 665544 466788999999999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.9e-13 Score=121.46 Aligned_cols=113 Identities=16% Similarity=0.268 Sum_probs=88.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~ 246 (351)
+.+.......++++|||||||+|.++..+++.|. .+|+|+|.|+.+... ++..... + ...++.++.+|+.+++.+.
T Consensus 25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a-~~~~~~~-~-~~~~i~~~~~~~~~l~~~~ 100 (311)
T d2fyta1 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQA-MDIIRLN-K-LEDTITLIKGKIEEVHLPV 100 (311)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHH-HHHHHHT-T-CTTTEEEEESCTTTSCCSC
T ss_pred HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHH-HHHHHHh-C-CCccceEEEeeHHHhcCcc
Confidence 3445444455688999999999999999999885 589999999988654 4444333 2 2678999999999999888
Q ss_pred CceeeEEeccccccCCC---hHHHHHHHHhcccCCcEEEE
Q 018740 247 SSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d---~~~~l~~i~~~LkpgG~li~ 283 (351)
++||+|++....+++.. +..++....+.|+|||+++-
T Consensus 101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999777666543 45777778899999999874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=2.5e-13 Score=115.64 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=93.6
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
...+.+.+...++.+|||||||+|+.+..+++.. ..+|+++|.++.+++.|++++... +..|+.++.+|.......
T Consensus 67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~---g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG
T ss_pred HHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHc---CCceeEEEECccccCCcc
Confidence 4567778888999999999999999999998762 237999999999999999999887 368999999999876556
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.++||.|++..+++++++. +.+.|+|||++++..
T Consensus 143 ~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 7899999999999987543 556899999998743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.6e-13 Score=121.98 Aligned_cols=104 Identities=14% Similarity=0.260 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
.++++|||||||+|.++..+++.|. .+|+|+|.|+.+ ..+++.+..+ + ...++.++.+|+.+++++.++||+|++.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n-~-~~~~v~~~~~~~~~~~~~~~~~D~ivs~ 107 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKAN-K-LDHVVTIIKGKVEEVELPVEKVDIIISE 107 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHT-T-CTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHh-C-CccccceEeccHHHcccccceeEEEeee
Confidence 3578999999999999999999874 489999999864 5566655554 2 2577999999999999988999999987
Q ss_pred cccccCC---ChHHHHHHHHhcccCCcEEEE
Q 018740 256 AAIHCWS---SPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 ~vl~h~~---d~~~~l~~i~~~LkpgG~li~ 283 (351)
...+++. ....++..+.++|||||.++-
T Consensus 108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 108 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 7666553 567899999999999999863
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=2.3e-12 Score=110.36 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=87.8
Q ss_pred HHHhcc--CCCCCCeEEEEcCccCHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCCeEEEEe
Q 018740 168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG------LFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRA 237 (351)
Q Consensus 168 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~i~~~~~ 237 (351)
.+.+.+ ...++.+|||||||+|+++..+++.. +..+|+++|+++++++.|++++.... .....++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 455555 56678999999999999998887751 23489999999999999988764320 001368999999
Q ss_pred cCCCCCCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 238 d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
|......+.++||.|++..+++++++ .+.+.|||||++++..
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 99876666789999999999998764 4678999999998744
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.5e-12 Score=108.77 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=98.0
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+.+++.+.+++.+||++||+|..+..+++..+..+|+|+|.++.|++.|++++... ..++.++.+++.++.
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFL 87 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHH
Confidence 45667778888899999999999999999999988889999999999999999998876 678999999987652
Q ss_pred ---CCCCceeeEEecccc--c-------cCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ---FASSSIDAVHAGAAI--H-------CWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl--~-------h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+..++||.|+....+ . .+......|..+.++|+|||.+++.++.
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 446789999875433 1 1223357899999999999999987765
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=1.2e-11 Score=108.40 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=103.1
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~ 247 (351)
.+...+. ++.+|||+|||+|.++..+++.+ .++|+++|+++.+++.++++++.+ +. ..+++++++|+.+++ ..+
T Consensus 100 ri~~~~~--~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n-~l-~~~v~~~~~D~~~~~-~~~ 173 (260)
T d2frna1 100 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN-KV-EDRMSAYNMDNRDFP-GEN 173 (260)
T ss_dssp HHHHHCC--TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT-TC-TTTEEEECSCTTTCC-CCS
T ss_pred HHHhhcC--CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHh-CC-CceEEEEEcchHHhc-cCC
Confidence 3444444 48899999999999999999886 359999999999999999999887 33 457999999998876 357
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHHHC
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC 327 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~a 327 (351)
.||.|++... +....++.++.+.|+|||++.+....... .......+.+.++++..
T Consensus 174 ~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~--------------------~~~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 174 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK--------------------LMPREPFETFKRITKEY 229 (260)
T ss_dssp CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--------------------GTTTTTHHHHHHHHHHT
T ss_pred CCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEeccccc--------------------cchhhHHHHHHHHHHHc
Confidence 8999987532 34456788899999999998775544221 11122456778888899
Q ss_pred CCeEE
Q 018740 328 GLVDF 332 (351)
Q Consensus 328 Gf~~v 332 (351)
|+.+.
T Consensus 230 g~~v~ 234 (260)
T d2frna1 230 GYDVE 234 (260)
T ss_dssp TCEEE
T ss_pred CCceE
Confidence 99764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=1.4e-12 Score=120.81 Aligned_cols=122 Identities=9% Similarity=0.004 Sum_probs=90.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC------CCCCCCeEE-EE
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKENFLL-VR 236 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------g~~~~~i~~-~~ 236 (351)
..+..+.+.++..++.++||||||+|..+..++...+..+++|+|+|+.|++.|+++..... +.....+.+ ..
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 34566777788888999999999999999999988655689999999999999998876421 122233333 34
Q ss_pred ecCCCCCCC---CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 237 ADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 237 ~d~~~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+++...+.. -..+|+|+++. +.|.++....|.++.+.|||||.++....
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 444433211 13467888654 56778888999999999999999987543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=8.1e-12 Score=112.77 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD~ 251 (351)
.++.+|||++||+|.++..++..+. +|+++|+|+.+++.|+++++.+ | ..+++++++|+.+. +...++||+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~n-g--l~~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLN-G--LGNVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHT-T--CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHc-C--CCCcceeeccHHHHhhhhHhhhcCCCE
Confidence 3578999999999999999887654 9999999999999999999887 3 46899999998653 344678999
Q ss_pred EEecccccc---------CCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VHAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl~h---------~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|++.---.. ..+...++..+.++|+|||.|++.+..
T Consensus 219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 997532110 112246788899999999999887654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=3e-11 Score=109.32 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=89.0
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----C
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----L 242 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----l 242 (351)
..+..++. ++.+|||++||+|.++..++..+. .+|+++|+|+.+++.+++++..+ |. ..+++++++|+.+ +
T Consensus 137 ~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n-gl-~~~~~~~~~d~~~~~~~~ 211 (324)
T d2as0a2 137 LALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN-GV-EDRMKFIVGSAFEEMEKL 211 (324)
T ss_dssp HHHGGGCC--TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHHHH
T ss_pred HHHHhhcC--CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc-CC-CccceeeechhhhhhHHH
Confidence 44555443 478999999999999999998874 48999999999999999999887 43 3578999999864 2
Q ss_pred CCCCCceeeEEeccccccC---------CChHHHHHHHHhcccCCcEEEEEeec
Q 018740 243 PFASSSIDAVHAGAAIHCW---------SSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~---------~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+....+||+|++.---.-- .+...++..+.++|+|||+|++.+..
T Consensus 212 ~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 212 QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3456789999974321110 11245788889999999999987754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.14 E-value=1.2e-10 Score=97.11 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=61.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEE
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~ 253 (351)
..-.|++|||+|||+|.++..++..++ .+|+|+|+++.+++.|+++ ..+++++++|+.+++ ++||+|+
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l~---~~fD~Vi 112 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEIS---GKYDTWI 112 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc--------cccccEEEEehhhcC---CcceEEE
Confidence 445688999999999999988888874 4799999999999999987 467899999998875 6799999
Q ss_pred eccc
Q 018740 254 AGAA 257 (351)
Q Consensus 254 ~~~v 257 (351)
++--
T Consensus 113 ~NPP 116 (197)
T d1ne2a_ 113 MNPP 116 (197)
T ss_dssp ECCC
T ss_pred eCcc
Confidence 9743
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.13 E-value=5.5e-11 Score=95.58 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=81.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~ 255 (351)
.+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.+++++... +. ..++.++++|+.. ++...++||+|++.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~-~~-~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMT-KA-ENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTT-TC-GGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhc-cc-ccchhhhcccccccccccccccceeEec
Confidence 578999999999999999888875 49999999999999999998876 22 4569999999866 34557889999974
Q ss_pred cccccCCChHHHHHHHH--hcccCCcEEEEEeec
Q 018740 256 AAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~--~~LkpgG~li~~~~~ 287 (351)
--.. ...-...+..+. +.|+|||.+++....
T Consensus 91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2211 011134455554 579999999987654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.13 E-value=1.2e-10 Score=104.59 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=85.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCceeeE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD~V 252 (351)
++.+|||+.||+|.++..++..+. .+|+++|+|+.+++.++++++.+ +....+++++++|+.+. .....+||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n-~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHh-cccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 478999999999999998887664 57999999999999999999887 55457899999998542 2235689999
Q ss_pred Eeccc-c----ccC----CChHHHHHHHHhcccCCcEEEEEeec
Q 018740 253 HAGAA-I----HCW----SSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 253 ~~~~v-l----~h~----~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
++.-- + ... .+...+++.+.++|+|||+|++.+..
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 97411 0 111 12346888899999999999987654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=1.3e-10 Score=95.20 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC----CCCCCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~----lp~~~~~fD~ 251 (351)
..+.+|||+|||+|.++..++.+|. +++++|.|+.+++.++++++.. | ....+...+... ......+||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~-~---~~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT-G---LGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH-T---CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhh-c---cccceeeeehhcccccccccCCccce
Confidence 3477999999999999999999886 8999999999999999998887 2 233444444322 2234578999
Q ss_pred EEeccccccCCChHHHHHHH--HhcccCCcEEEEEeec
Q 018740 252 VHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i--~~~LkpgG~li~~~~~ 287 (351)
|++.--.+ . +....+.++ ..+|+|||++++....
T Consensus 114 If~DPPY~-~-~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 114 AFMAPPYA-M-DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEECCCTT-S-CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred eEEccccc-c-CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 99853222 2 222334443 3579999999887553
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=3.2e-10 Score=99.27 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=102.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C
Q 018740 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (351)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p 243 (351)
+.+.+.......+..++||+|||+|..+..+++. +..+|+++|+|+.+++.|+++++.. +. ..++.+..+|+... +
T Consensus 98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~-~~-~~~~~i~~~~~~~~~~ 174 (271)
T d1nv8a_ 98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH-GV-SDRFFVRKGEFLEPFK 174 (271)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT-TC-TTSEEEEESSTTGGGG
T ss_pred hhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHc-CC-CceeEEeecccccccc
Confidence 3444444444444568999999999999888764 6789999999999999999999876 22 45678888888663 3
Q ss_pred CCCCceeeEEecccc----ccC-----CChH----------HHHHH-HHhcccCCcEEEEEeeccCCCCCcchHHHHHHH
Q 018740 244 FASSSIDAVHAGAAI----HCW-----SSPS----------TGVAE-ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl----~h~-----~d~~----------~~l~~-i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 303 (351)
...++||+|+++=-. +.+ -+|. .++++ +.+.|+|||++++....
T Consensus 175 ~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~---------------- 238 (271)
T d1nv8a_ 175 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE---------------- 238 (271)
T ss_dssp GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT----------------
T ss_pred cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH----------------
Confidence 334789999998210 011 1222 23333 45789999998885431
Q ss_pred HHhhccCCccCCCHHHHHHHHHHCCCeEEEEEecCeEEEEEEecCC
Q 018740 304 NMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 349 (351)
Q Consensus 304 ~~~~~~~~~~~~s~~~l~~ll~~aGf~~v~~~~~g~~~~~~a~kp~ 349 (351)
--.+.+.+++++.||. ....|.-.++.++|.+
T Consensus 239 -----------~Q~~~v~~l~~~~g~~---kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 239 -----------DQVEELKKIVSDTVFL---KDSAGKYRFLLLNRRS 270 (271)
T ss_dssp -----------TCHHHHTTTSTTCEEE---ECTTSSEEEEEEECCC
T ss_pred -----------HHHHHHHHHHHhCCEE---eccCCCcEEEEEEEcC
Confidence 1134555666677772 2345666777777754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.08 E-value=3.9e-10 Score=94.18 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCCeEEEEcCccCHHHHH----HHHh----CCCCeEEEEeCCHHHHHHHHHHH------------------hhhCCCC--
Q 018740 177 LGGNIIDASCGSGLFSRI----FAKS----GLFSLVVALDYSENMLKQCYEFV------------------QQESNFP-- 228 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~----l~~~----~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~g~~-- 228 (351)
+..+|+++|||+|.-... +.+. ....+++|.|+|+.+++.|++.. ....+..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 455999999999984332 3332 22347999999999999998421 0000000
Q ss_pred --------CCCeEEEEecCCCC-CCCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 018740 229 --------KENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 229 --------~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~ 284 (351)
...+.+...+.... +.+.+.||+|+|.+||.++.++ .++++++++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01234444444432 2345789999999999999866 48899999999999998873
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.08 E-value=2.2e-10 Score=101.90 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----CCCCCceee
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA 251 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l----p~~~~~fD~ 251 (351)
.++.+|||+.||+|.++..++..|. +|++||.|+.+++.|++++..+ |....+++++++|+.+. ......||+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 3477999999999999999998876 8999999999999999999887 54455799999998653 123568999
Q ss_pred EEec---ccc------ccCC-ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 252 VHAG---AAI------HCWS-SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 252 V~~~---~vl------~h~~-d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|++. +.. ..+. +...+++.+.++|+|||.+++.+.+
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9973 111 1111 2245667788999999987776654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=6.5e-10 Score=93.39 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCCcHHHHHHH---HhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEE
Q 018740 159 FPGPEKEFELM---KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (351)
Q Consensus 159 ~~~~~~~~~~l---~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~ 235 (351)
|..+...+..+ ........|.+|||+|||+|.++..++..+. .+|+|+|+++.+++.+++++... ..+..++
T Consensus 25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~~ 99 (201)
T d1wy7a1 25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVF 99 (201)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc----CCCceEE
Confidence 34444443333 2334455688999999999999998888874 48999999999999999998877 5788999
Q ss_pred EecCCCCCCCCCceeeEEecccc
Q 018740 236 RADISRLPFASSSIDAVHAGAAI 258 (351)
Q Consensus 236 ~~d~~~lp~~~~~fD~V~~~~vl 258 (351)
.+|+..+ ++.||+|+++--.
T Consensus 100 ~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 100 IGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp ESCGGGC---CCCCSEEEECCCC
T ss_pred ECchhhh---CCcCcEEEEcCcc
Confidence 9998776 4679999987554
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5.6e-09 Score=90.48 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=65.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC------CCCCCcee
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASSSID 250 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l------p~~~~~fD 250 (351)
+..++||+|||+|..+..++.+.+.++++|+|+|+.+++.|+++++.+ +. ..++.++..+.... ...+++||
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n-~l-~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NL-SDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-TC-TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh-CC-CcceeeeeeccHHhhhhhhhhcccCcee
Confidence 345899999999999999999877889999999999999999999886 32 56788887665432 12356899
Q ss_pred eEEecccccc
Q 018740 251 AVHAGAAIHC 260 (351)
Q Consensus 251 ~V~~~~vl~h 260 (351)
+|+|+--...
T Consensus 139 ~ivsNPPY~~ 148 (250)
T d2h00a1 139 FCMCNPPFFA 148 (250)
T ss_dssp EEEECCCCC-
T ss_pred EEEecCcccc
Confidence 9999876554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=2.1e-10 Score=97.32 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=82.9
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-----CC
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p-----~~ 245 (351)
+...++++|||+|||+|..+..+++.. ..++++++|+++.+.+.|++++... |. ..+++++.+|..+. + +.
T Consensus 52 v~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~-gl-~~~i~l~~Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 52 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA-GL-QDKVTILNGASQDLIPQLKKKYD 129 (214)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEESCHHHHGGGHHHHSC
T ss_pred HHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc-CC-Cccceeeeccccccccchhhccc
Confidence 333345699999999999999999874 3579999999999999999998876 33 46799999998653 2 34
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.||+|+..+.-+. ......+.+..++|+|||++++-..
T Consensus 130 ~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp CCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred ccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeCc
Confidence 568999997532111 1123457778899999998877443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=6e-09 Score=86.00 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=83.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-CCCCCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 255 (351)
.+.+|||++||+|.++..++.+|. ..|+.+|.++.+++.++++++.. ...++.++.+|+... .....+||+|++.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~---~~~~~~ii~~d~~~~l~~~~~~fDlIf~D 118 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAMSFLAQKGTPHNIVFVD 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc---cccceeeeeecccccccccccccCEEEEc
Confidence 467999999999999999999885 48999999999999999998765 256789999997653 3456789999986
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEeec
Q 018740 256 AAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~ 287 (351)
--.. .......+..+.+ .|+++|++++....
T Consensus 119 PPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 119 PPFR-RGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp CSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred Cccc-cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4422 2334566666654 69999999997654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.5e-09 Score=89.80 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=89.5
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C-
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p- 243 (351)
..+.......+.++|||||||+|..+..+++..+ +++++.+|.++...+.|++.+... |. ..+++++.+|+.+. +
T Consensus 49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a-g~-~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EA-EHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TC-TTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc-Cc-cceEEEEEeehhhcchh
Confidence 3333444444567999999999999999998754 579999999999999999999876 43 57899999997542 1
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...++||+|+..+-= .+-...++.+.+.|+|||++++....
T Consensus 127 ~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 235789999974321 23457788999999999999986554
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.86 E-value=6.7e-09 Score=89.03 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++... .+++.++.+|+.++
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhc
Confidence 44567788888888899999999999999999999976 999999999999999988654 47999999999988
Q ss_pred CCCCCceeeEEeccccccC
Q 018740 243 PFASSSIDAVHAGAAIHCW 261 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~ 261 (351)
+++......|+ .+.-+++
T Consensus 80 ~~~~~~~~~vv-~NLPYnI 97 (235)
T d1qama_ 80 KFPKNQSYKIF-GNIPYNI 97 (235)
T ss_dssp CCCSSCCCEEE-EECCGGG
T ss_pred cccccccceee-eeehhhh
Confidence 76654444444 3333344
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.84 E-value=1.1e-08 Score=84.18 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=89.9
Q ss_pred HHHHHHHHhccCC-CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC
Q 018740 163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (351)
Q Consensus 163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~ 241 (351)
+...+.+...+.. ..+.+|||+.||+|.++..++.+|. ..|+++|.++.+++.+++++... +. ..+++++++|+.+
T Consensus 26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~-~~-~~~~~i~~~D~~~ 102 (182)
T d2fhpa1 26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAIT-KE-PEKFEVRKMDANR 102 (182)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH-TC-GGGEEEEESCHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhh-hc-ccccccccccchh
Confidence 3444555555543 3578999999999999999999985 48999999999999999998765 22 4579999999865
Q ss_pred C----CCCCCceeeEEeccccccCCChHHHHHHHHh--cccCCcEEEEEeec
Q 018740 242 L----PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (351)
Q Consensus 242 l----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~ 287 (351)
. .-...+||+|++.--. +..+....+..+.. .|+|+|++++....
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 2 1235679999975332 22344567777754 69999999987653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=3.1e-08 Score=88.31 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=84.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC--CCCCCCeEEEEecCCCC-CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--g~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 253 (351)
..++||.||.|.|..+..+.+..+..+|+++|+++.+++.|++.+.... -...++++++.+|+... .-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 4679999999999999999888767799999999999999999874320 01257899999998653 23356899999
Q ss_pred eccccccC-CC------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCW-SS------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~-~d------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.-..=.+. .. -..+++.+++.|+|||++++....
T Consensus 157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 54321011 11 147899999999999999886544
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.79 E-value=2.4e-08 Score=89.94 Aligned_cols=124 Identities=11% Similarity=0.110 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHH----hccCCCCCCeEEEEcCccCHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCC
Q 018740 159 FPGPEKEFELMK----GYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQESNFPK 229 (351)
Q Consensus 159 ~~~~~~~~~~l~----~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~ 229 (351)
+..|....+.+. ..+...++.+|||.+||+|.++..+.+. .....++|+|+++.+++.|+.++... .
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----~ 170 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----R 170 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----T
T ss_pred EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----h
Confidence 445555444433 3445666789999999999999888653 23347999999999999999887776 5
Q ss_pred CCeEEEEecCCCCCCCCCceeeEEeccccccCCC------------------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS------------------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 230 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d------------------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.+.....+|..... ...+||+|+++--+..... ...+++.+.+.|+|||++++..|.
T Consensus 171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 171 QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred hhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 66777788765543 4578999999854321111 124689999999999999998886
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.69 E-value=6.2e-08 Score=84.91 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-------CCCCCCeEEEEecCCCCCCCCCce
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRADISRLPFASSSI 249 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------g~~~~~i~~~~~d~~~lp~~~~~f 249 (351)
.+.+||.||+|.|..+..+.+.. ..+|+.+|+++.+++.|++.+.... ....++++++.+|+...--.+++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 46799999999999999988764 4689999999999999998764321 112578999999986542235789
Q ss_pred eeEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEeec
Q 018740 250 DAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 250 D~V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
|+|++-.. .....+ ..+++.+++.|+|||+++....+
T Consensus 151 DvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 151 DVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 99996432 222111 47899999999999999886544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.68 E-value=3.2e-08 Score=84.10 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C------CCCC
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P------FASS 247 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p------~~~~ 247 (351)
.+.++|||||+++|+.+..+++..+ +++++.+|.++...+.|++.+... |. ..+++++.+++.+. + ...+
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~-g~-~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-GV-DHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-TC-GGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh-cc-ccceeeeehHHHHHHHHHHhccccCC
Confidence 3457999999999999999998754 579999999999999999999886 44 56899999998542 2 1256
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+||+|+...-= ..-...++.+.++|+|||++++...
T Consensus 136 ~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 136 SYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp CBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred ceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence 89999975321 3456788899999999999998644
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=9.8e-08 Score=84.08 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=83.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
..++||-||.|.|..++.+.+..+..+|+++|+++.+++.+++.+.... ....++++++.+|+... .-.+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 3579999999999999999987666799999999999999999765421 12258999999998553 333568999997
Q ss_pred cccccc-CC----ChHHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHC-WS----SPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h-~~----d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...-.. .+ --..+++.+++.|+|||+++....+
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 432111 11 1247899999999999999886543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.64 E-value=5.1e-08 Score=82.40 Aligned_cols=115 Identities=19% Similarity=0.284 Sum_probs=86.0
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEec
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d 238 (351)
+.|....+.+...+...++.+|||.|||+|.++..+.+. .....++|+|+++.++.. ......+.+|
T Consensus 2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~ 69 (223)
T d2ih2a1 2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILAD 69 (223)
T ss_dssp CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESC
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeee
Confidence 346777888889988888999999999999999888765 334579999999865433 2345677788
Q ss_pred CCCCCCCCCceeeEEeccccccCC----------------------------C-hHHHHHHHHhcccCCcEEEEEeec
Q 018740 239 ISRLPFASSSIDAVHAGAAIHCWS----------------------------S-PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 239 ~~~lp~~~~~fD~V~~~~vl~h~~----------------------------d-~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..... ....||+|+++-...... + ...+++.+.+.|+|||.+.+.+|.
T Consensus 70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 76654 357899999875542211 0 125578889999999999998876
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=2e-07 Score=81.41 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=84.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCC-CCCCCeEEEEecCCC-CCCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRADISR-LPFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g-~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 254 (351)
..++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+....+ ...++++++.+|... +.-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 35799999999999999999876667999999999999999998754211 236899999999855 2233578999997
Q ss_pred ccccccCC-----ChHHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~-----d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-.. +... --..+++.+++.|+|||+++....
T Consensus 155 D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 532 1111 124789999999999999998654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.63 E-value=1.5e-09 Score=93.69 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=76.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+.+.+...++.+|||||||+|.++..|++.+. +|+++|+++.+++.+++++.. .+++.++.+|+.+++
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQ 88 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTT
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccc
Confidence 3456788888888889999999999999999999976 999999999999888776543 478999999999998
Q ss_pred CCCCceeeEEeccccccCCCh
Q 018740 244 FASSSIDAVHAGAAIHCWSSP 264 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~ 264 (351)
++...++.|+++-- .|+..+
T Consensus 89 ~~~~~~~~vv~NLP-Y~Ist~ 108 (245)
T d1yuba_ 89 FPNKQRYKIVGNIP-YHLSTQ 108 (245)
T ss_dssp CCCSSEEEEEEECC-SSSCHH
T ss_pred cccceeeeEeeeee-hhhhHH
Confidence 87777776665444 566555
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.1e-07 Score=81.61 Aligned_cols=110 Identities=13% Similarity=0.143 Sum_probs=83.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
.+++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+.... ....++++++.+|+... .-..++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 4579999999999999999987666799999999999999999875321 12268999999997542 223568999997
Q ss_pred ccccccCCCh-----HHHHHHHHhcccCCcEEEEEeec
Q 018740 255 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 255 ~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
-.. +-...+ ..+++.+++.|+|||++++....
T Consensus 158 D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 158 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 532 211111 26799999999999999987654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=1.1e-07 Score=77.91 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=88.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+...+.+.+++.++|..+|.|..+..+.+... +|+|+|.++.+++.+++. ...++.+++.++.++.
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHHH
Confidence 34566777888899999999999999999999754 999999999999999864 1578999999887653
Q ss_pred ---CCCCceeeEEecccc--ccCCCh-------HHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ---FASSSIDAVHAGAAI--HCWSSP-------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl--~h~~d~-------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...+.+|.|+....+ .++.++ ...|......|+|||.+++.++.
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 335679999975433 222232 35688889999999999988764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=3.5e-07 Score=76.28 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=85.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEecc
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 256 (351)
++.+|+|+|+|.|.-+..++-..|+.+++.+|.+..-+...++..... +..+++++...++++. .+.+||+|++..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~~~-~~~~fD~V~sRA 140 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc---CCcceeeeccchhhhc-cccccceehhhh
Confidence 356999999999999999988888899999999998888888766665 2468999999999875 356899999855
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 257 vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
+ .+...+++-+...++++|.+++.-
T Consensus 141 ~----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 F----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp S----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred h----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 5 567888999999999999988853
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=5.2e-07 Score=81.93 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=85.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
+.+.+.+.+++...++.+|||+-||.|.++..|++.+. +|+|+|.++.+++.|+++++.+ +..|+.++.++.++.
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n---~i~n~~~~~~~~~~~ 272 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLN---GLQNVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCTTSC
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhc---ccccceeeecchhhh
Confidence 44566777788887888999999999999999999876 9999999999999999998887 368999999998663
Q ss_pred ----CCCCCceeeEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEe
Q 018740 243 ----PFASSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ----p~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~~~LkpgG~li~~~ 285 (351)
+.....+|+|+. || ...++.+.+ ++|.-+++++.
T Consensus 273 ~~~~~~~~~~~d~vil--------DPPR~G~~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLL--------DPARAGAAGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp CSSSGGGTTCCSEEEE--------CCCTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhhhccCceEEe--------CCCCccHHHHHHHHHH-cCCCEEEEEeC
Confidence 223467999985 33 245666655 36766676653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.51 E-value=2e-07 Score=82.53 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=81.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC-CCCCCceeeEEe
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 254 (351)
.+++||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+.... +...++++++.+|.... .-..++||+|+.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 3569999999999999999987666699999999999999999875421 12358999999998653 223578999997
Q ss_pred ccccccCC----ChHHHHHHHHhcccCCcEEEEEee
Q 018740 255 GAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 255 ~~vl~h~~----d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-..-..-+ --..+++.+++.|+|||+++....
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 43211111 113778999999999999998654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.51 E-value=3.5e-07 Score=75.06 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=80.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC---CCCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~---lp~~~~~fD~V~ 253 (351)
.+.+|||+-||+|.++..++.+|. ..|+.+|.+..+++..+++++.. +.......+...|..+ .......||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l-~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhh-cccccccccccccccccccccccCCcccEEE
Confidence 356999999999999999999985 59999999999999999998765 3323456666666432 233456799999
Q ss_pred eccccccCCChHHHHHHHHh--cccCCcEEEEEeec
Q 018740 254 AGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~~--~LkpgG~li~~~~~ 287 (351)
+.=-.. .......+..+.. .|+++|++++....
T Consensus 121 lDPPY~-~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 121 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred echhHh-hhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 743322 1223466776654 79999999997654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.46 E-value=3.2e-07 Score=85.46 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=99.2
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHHHhh
Q 018740 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------FSLVVALDYSENMLKQCYEFVQQ 223 (351)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~ 223 (351)
+.|+.|....+.+...+.+.++.+|+|..||+|.++..+.+... ...++|+|+++.+...|+.++..
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 44888999999999999988889999999999999988766421 12599999999999999987765
Q ss_pred hCCCCCCCeEEEEecCCCCCCCCCceeeEEeccccccC----------------CC-hHHHHHHHHhcccCCcEEEEEee
Q 018740 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW----------------SS-PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 224 ~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----------------~d-~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
. |.......+...|....+ +...||+|+++--+..- .+ -..++..+.+.|++||++.+..|
T Consensus 222 ~-g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 222 H-GIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp T-TCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 5 443445667777776543 45789999987544211 01 13689999999999999999888
Q ss_pred c
Q 018740 287 I 287 (351)
Q Consensus 287 ~ 287 (351)
.
T Consensus 300 ~ 300 (425)
T d2okca1 300 D 300 (425)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.45 E-value=3e-07 Score=80.91 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CCCCCCeEEEEecCCCC--CCCCCceeeEE
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAVH 253 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 253 (351)
..++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+.... ....++++++.+|.... ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 3579999999999999999988666799999999999999999764320 12268999999997542 23356899999
Q ss_pred eccccccCCC-----hHHHHHHHHhcccCCcEEEEEeec
Q 018740 254 AGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 254 ~~~vl~h~~d-----~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.... ..... -..+++.+++.|+|||+++....+
T Consensus 160 ~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 6432 11111 147899999999999999987644
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=1.6e-06 Score=77.08 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=90.9
Q ss_pred HHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
......+.+.++.+|||+.+|.|.=+..++... ..+.+++.|+++.-++..++++... +..++.....|...++..
T Consensus 106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~---~~~~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHIGEL 182 (313)
T ss_dssp HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGGG
T ss_pred cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH---Hhhccccccccccccccc
Confidence 345556778889999999999999877777653 3568999999999999999988877 257788888888777766
Q ss_pred CCceeeEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 SSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 ~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+..||.|+.- +++..-++ ...+|.+..+.|||||.++.+|-..
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 7889999952 23322222 1367889999999999999887654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=9.8e-06 Score=65.85 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------CC
Q 018740 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 245 (351)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------~~ 245 (351)
..++.+|||+||+.|.|+..+.+. +....++++|+.+- ...+++.++.+|+.+.. ..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeecccccchhhhhhhhhcc
Confidence 356789999999999999988875 44568999998762 02578999999987532 23
Q ss_pred CCceeeEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEeec
Q 018740 246 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...+|+|++-.+..-..+. ...+.-+.++|++||.+++-.+.
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 5679999998775443332 25566778899999999997764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.37 E-value=2.6e-07 Score=78.59 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=67.3
Q ss_pred CCCeEEEEcCccCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCc
Q 018740 177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSS 248 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~ 248 (351)
++.+|||||++.|..+..++. .+..++++|+|+++........ ...++.++.+|..+.. +....
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeecccccHHHHHHHHhcC
Confidence 356999999999987665553 3456799999998754332221 1578999999976542 33456
Q ss_pred eeeEEeccccccCCChH-HHHHHHHhcccCCcEEEEEee
Q 018740 249 IDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~-~~l~~i~~~LkpgG~li~~~~ 286 (351)
+|+|+.-.. |+ .+.. ..+ +....|++||++++.+.
T Consensus 152 ~dlIfID~~-H~-~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 152 HPLIFIDNA-HA-NTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSEEEEESS-CS-SHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CCEEEEcCC-cc-hHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 888876543 33 3322 223 46689999999999764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=1.2e-06 Score=74.33 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCceeeE
Q 018740 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAV 252 (351)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~fD~V 252 (351)
....+|+|||+|.|.-+..++-..|+.+++.+|.+..-+...+.-.... +..++.++...++.+.. ..++||+|
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L---~L~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh---CCCCcEEEeehhhhccccccccccceEE
Confidence 3467999999999999888888778889999999988777777665554 25788999888876532 23679999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
++-.+ .....++.-....+++||.+++.
T Consensus 146 ~sRAv----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 146 TARAV----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEECC----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEhhh----hCHHHHHHHHhhhcccCCEEEEE
Confidence 98654 67888999999999999999884
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.1e-06 Score=74.65 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=69.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC
Q 018740 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (351)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp 243 (351)
...+.+.+.+...++..|||||+|.|.++..|++.+. +|+++|+++.+++..++.+... ....+++++.+|+....
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~--~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhh--ccccchhhhHHHHhhhh
Confidence 4456777777777889999999999999999999986 9999999999999999887653 11368999999998876
Q ss_pred CCCCceeeEEec
Q 018740 244 FASSSIDAVHAG 255 (351)
Q Consensus 244 ~~~~~fD~V~~~ 255 (351)
++ .++.|+.+
T Consensus 84 ~~--~~~~vV~N 93 (278)
T d1zq9a1 84 LP--FFDTCVAN 93 (278)
T ss_dssp CC--CCSEEEEE
T ss_pred hh--hhhhhhcc
Confidence 44 24556644
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=4.9e-07 Score=77.79 Aligned_cols=75 Identities=7% Similarity=0.129 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC
Q 018740 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (351)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l 242 (351)
....+.+.+.+...++..|||||||.|.++..|++.+. +|+++|+++.+++..+++... .+++.++.+|+.++
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhh
Confidence 34456778888888899999999999999999999876 999999999999999875433 37899999999876
Q ss_pred CC
Q 018740 243 PF 244 (351)
Q Consensus 243 p~ 244 (351)
++
T Consensus 80 ~~ 81 (252)
T d1qyra_ 80 NF 81 (252)
T ss_dssp CH
T ss_pred cc
Confidence 53
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=4.3e-06 Score=73.21 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=87.4
Q ss_pred HHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-CCC
Q 018740 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS 246 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-~~~ 246 (351)
.....+.+.++.+|||+.+|.|.=+..+++.+....++++|+++.-++..+++++.. | ..++.....|..... ...
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~-g--~~~~~~~~~~~~~~~~~~~ 169 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL-G--MKATVKQGDGRYPSQWCGE 169 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT-T--CCCEEEECCTTCTHHHHTT
T ss_pred ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc-c--ccceeeeccccccchhccc
Confidence 445567788899999999999999999988877779999999999999999998887 2 334444443333221 235
Q ss_pred CceeeEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 247 SSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 247 ~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
+.||.|+.- +++..-++. ..+|..+.+.|||||+++.+|-..
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 679999952 344333331 377889999999999999888654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.7e-05 Score=69.64 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC--
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-- 245 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-- 245 (351)
....+.+.++.+|||+.+|.|.-+..++.. .....++++|+++.-++..+++++.. +..++.+...|...++..
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~---g~~~~~~~~~d~~~~~~~~~ 162 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSDP 162 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTCG
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc---Cccceeeeehhhhhhccccc
Confidence 445567788999999999999988877765 44568999999999999999998887 357899999998776432
Q ss_pred -CCceeeEEec------cccccCCC-----------h-------HHHHHHHHhcccCCcEEEEEeecc
Q 018740 246 -SSSIDAVHAG------AAIHCWSS-----------P-------STGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 246 -~~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.+.||.|+.. +++..-++ . ..+|..+. .|+|||.++.+|-..
T Consensus 163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 2579999953 23222111 0 13344444 479999988877654
|
| >d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Uncharacterized protein Cgl1405/cg1592 species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.04 E-value=9.4e-07 Score=57.51 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=38.9
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
.-+++|+||.|+++|.... ..+.+.|+.|+..|++.+|++.++.+.
T Consensus 6 ~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~~~YPI~dgIPvLL~de 51 (59)
T d2jnya1 6 QLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE 51 (59)
T ss_dssp GGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred HHHHHhcCCCCCCEeEEeC---------CCCEEEcCccCccccccCCccccCHHH
Confidence 4578899999999997754 346799999999999999999987753
|
| >d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Uncharacterized protein PFL1779 species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.00 E-value=9.7e-07 Score=57.20 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
-+++++||.|+++|.... ..+.+.|..|+..|++.+|++.++.+.
T Consensus 3 LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~laYPI~dGIPvlL~~e 47 (59)
T d2pk7a1 3 LLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE 47 (59)
T ss_dssp GGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred hHhheECCCCCCcceEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence 357899999999998754 246799999999999999999998764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=1.4e-05 Score=76.03 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=91.2
Q ss_pred cCCCCCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhC----C--------------CCeEEEEeCCHHHHHHH
Q 018740 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----L--------------FSLVVALDYSENMLKQC 217 (351)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~--------------~~~v~gvD~s~~~~~~a 217 (351)
.+.|+.|....+.+...+.+.++.+|+|-.||+|.++..+.+.. . ...++|+|+++.+...|
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 35688899999999999998888999999999999987765531 0 12589999999999999
Q ss_pred HHHHhhhCCCCC---CCeEEEEecCCCCC-CCCCceeeEEeccccc--cC-----------CCh-HHHHHHHHhcccCCc
Q 018740 218 YEFVQQESNFPK---ENFLLVRADISRLP-FASSSIDAVHAGAAIH--CW-----------SSP-STGVAEISRVLRPGG 279 (351)
Q Consensus 218 ~~~~~~~~g~~~---~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~--h~-----------~d~-~~~l~~i~~~LkpgG 279 (351)
+-++... |... ..-.+...+....+ .....||+|+++--+. .. .+. ..++..+.+.|+|||
T Consensus 223 ~~nl~l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG 301 (524)
T d2ar0a1 223 LMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 301 (524)
T ss_dssp HHHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHhh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence 8876544 1110 01123333332211 2346799999874331 11 111 268999999999999
Q ss_pred EEEEEeec
Q 018740 280 VFVGTTYI 287 (351)
Q Consensus 280 ~li~~~~~ 287 (351)
++.+..|.
T Consensus 302 r~aiIlP~ 309 (524)
T d2ar0a1 302 RAAVVVPD 309 (524)
T ss_dssp EEEEEEEH
T ss_pred cEEEEEeh
Confidence 99998885
|
| >d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Hypothetical protein CV3345 species: Chromobacterium violaceum [TaxId: 536]
Probab=97.94 E-value=1.1e-06 Score=57.01 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCceeCCCCCCCcccccCCCcccccccCCccccccccccccccCceeeecccC
Q 018740 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (351)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 121 (351)
-+++|+||.|+++|.... ..+.+.|..|+..|++.+|++.++.+.
T Consensus 4 LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~l~YPI~dGIPvlL~~e 48 (59)
T d2hf1a1 4 FLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE 48 (59)
T ss_dssp CEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred HhhhhcCCCCCCeeeEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence 357899999999998754 246799999999999999999998764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.86 E-value=2.1e-05 Score=71.26 Aligned_cols=106 Identities=17% Similarity=0.068 Sum_probs=80.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC-------------CCCeEEEEecCCCCC
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------KENFLLVRADISRLP 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~-------------~~~i~~~~~d~~~lp 243 (351)
++.+|||..||+|..+..++...+..+|+..|+|+.+++.++++++.+ +.. ...+.+...|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN-~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN-FDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH-CCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhc-CccccccccccccccccceeEeehhhhhhhh
Confidence 356999999999999998777655568999999999999999998876 221 123455556654332
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
-....||+|.. .-+..|..+|..+.+.++.||.|.++.-.
T Consensus 124 ~~~~~~fDvIDi----DPfGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDL----DPFGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccC----CCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 12457999885 44667889999999999999999987543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.81 E-value=0.00017 Score=60.60 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=68.6
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCCCCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASS 247 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~lp~~~~ 247 (351)
+.+.....+..+|+|+|||.|.++..++.......+.|+++--...+. ...... ....-+.+... |+..+ +..
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~---~~~ni~~~~~~~dv~~l--~~~ 131 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMST---YGWNLVRLQSGVDVFFI--PPE 131 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCS---TTGGGEEEECSCCTTTS--CCC
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccc---cccccccchhhhhHHhc--CCC
Confidence 333334566789999999999999999988655578888884221000 000000 00111233322 23333 467
Q ss_pred ceeeEEeccccccCCChH-------HHHHHHHhcccCCcEEEEEeec
Q 018740 248 SIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~-------~~l~~i~~~LkpgG~li~~~~~ 287 (351)
..|+|+|-.+ ++-+++. .+|+-+.+.|+|||-+++-...
T Consensus 132 ~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 132 RCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 8999999865 3344442 5567777899999998887665
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.00056 Score=60.37 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=56.0
Q ss_pred HHHHHHHHhccCC------CCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE
Q 018740 163 EKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236 (351)
Q Consensus 163 ~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~ 236 (351)
....+.+.+.+.. ..+..|||||+|.|.++..+.+.+...+|+++|+++...+..++.+. ..++.++.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~ 96 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILK 96 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEEC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEe
Confidence 3444555554432 24568999999999999999987534589999999999999887643 35789999
Q ss_pred ecCCCC
Q 018740 237 ADISRL 242 (351)
Q Consensus 237 ~d~~~l 242 (351)
+|+..+
T Consensus 97 ~D~l~~ 102 (322)
T d1i4wa_ 97 RDPYDW 102 (322)
T ss_dssp SCTTCH
T ss_pred Cchhhc
Confidence 998643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.11 E-value=0.0037 Score=49.24 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=67.7
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------- 243 (351)
.+..++.+||-+|||. |.++..+++.. ..+|+++|.++.-++.+++. .....+...+...-.
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhhhh
Confidence 4566788999999985 77777777764 45999999999999999874 222222221111100
Q ss_pred -CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....+|+|+-. ... ...+....+.|+|+|.+++.....
T Consensus 93 ~~~g~g~D~vid~-----~g~-~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 93 SAIGDLPNVTIDC-----SGN-EKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp HHSSSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred cccccCCceeeec-----CCC-hHHHHHHHHHHhcCCceEEEecCC
Confidence 113458988842 222 356888899999999999876543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.11 E-value=0.0031 Score=50.08 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=69.7
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---- 242 (351)
.+....+..++.+||=+|||. |.++..+++......++.+|.++.-++.+++. | -..++..+-.+.
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-----G----a~~~i~~~~~~~~~~i 89 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-----G----ATHVINSKTQDPVAAI 89 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-----T----CSEEEETTTSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-----C----CeEEEeCCCcCHHHHH
Confidence 345556778899999999986 66666776653344788999999999998875 1 112333222221
Q ss_pred -CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.++.+|+|+ +.... ...++...+.++|+|.+++...
T Consensus 90 ~~~t~gg~D~vi-----d~~G~-~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 90 KEITDGGVNFAL-----ESTGS-PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp HHHTTSCEEEEE-----ECSCC-HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHcCCCCcEEE-----EcCCc-HHHHHHHHhcccCceEEEEEee
Confidence 12245799988 33333 3557888999999999988643
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.08 E-value=0.0034 Score=55.67 Aligned_cols=154 Identities=15% Similarity=0.065 Sum_probs=94.7
Q ss_pred CeEEEEcCccCHHHH--------HHHH--------hCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCC--eEEEEecCC
Q 018740 179 GNIIDASCGSGLFSR--------IFAK--------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADIS 240 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~--------~l~~--------~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~--i~~~~~d~~ 240 (351)
-+|.|+||.+|..+. .+.+ .-|+.+|.--|+-.+-....-+.+... +...++ +..+.+.+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~-~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-NDVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS-CSCTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccc-ccCCCCeEEEecCCchh
Confidence 479999999998763 2221 124557778887554444443333322 111112 334556666
Q ss_pred CCCCCCCceeeEEeccccccCCC---------------------------------hHHHHHHHHhcccCCcEEEEEeec
Q 018740 241 RLPFASSSIDAVHAGAAIHCWSS---------------------------------PSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 241 ~lp~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.--||+++.|++++..++||+.. -..+|+.=++-|+|||+++++...
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 65688999999999999999842 124677777889999999998887
Q ss_pred cCCCCC-------cchHHHHHHHHHhh-----------ccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 288 VDGPFN-------LIPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 288 ~~~~~~-------~~~~~~~~~~~~~~-----------~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
.+.... ....+...+..+.. ..-...+.+.+|++..+++.|.-.++
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~ 275 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLID 275 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeee
Confidence 643221 11222222222111 12234577899999999988775444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0024 Score=51.12 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC----
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l---- 242 (351)
.+.+..+..++.+||-+|+|. |.+...+++.....+|+++|.++..++.+++. ... ..+...-.+.
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~ 89 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI--------GAD-LTLNRRETSVEERR 89 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc--------cce-EEEeccccchHHHH
Confidence 344555667789999999985 77888888774323899999999999999863 111 1221111111
Q ss_pred ----C-CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 243 ----P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 243 ----p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
. .....+|+|+-. ...+ ..++...+.|+|||.+++...
T Consensus 90 ~~i~~~~~~~g~Dvvid~-----vG~~-~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 90 KAIMDITHGRGADFILEA-----TGDS-RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp HHHHHHTTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHhhCCCCceEEeec-----CCch-hHHHHHHHHhcCCCEEEEEee
Confidence 0 123459998843 3222 347888899999999987653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0024 Score=50.34 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-CCCCCCce
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSI 249 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-lp~~~~~f 249 (351)
..+..++.+||=+|+|. |.++..+++.. ..+++++|.++.-.+.+++. | .+ .++...-.. .....+.+
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l-----G--ad--~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-----G--AD--EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-----T--CS--EEEETTCHHHHHTTTTCE
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc-----C--Cc--EEEECchhhHHHHhcCCC
Confidence 34667799999999986 77888887764 45889999999888888764 1 11 122211111 11223569
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+++-.-.-. ..+....+.|+++|.+++...
T Consensus 95 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 95 DFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred ceeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence 9888543211 126677899999999998654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.016 Score=45.47 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=67.3
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------- 243 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------- 243 (351)
.+..++.+||=+|+|. |.++..+++.....+|+++|.++.-++.|++. .-. .++..+-.+..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~--------Ga~-~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI--------GAD-LVLQISKESPQEIARKVEG 92 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCS-EEEECSSCCHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh--------CCc-ccccccccccccccccccc
Confidence 4566788999999987 66777777664334899999999999999874 111 12222212110
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
.....+|+|+- .... ...++...+.+++||++++.....
T Consensus 93 ~~g~g~Dvvid-----~~G~-~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 93 QLGCKPEVTIE-----CTGA-EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp HHTSCCSEEEE-----CSCC-HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred cCCCCceEEEe-----ccCC-chhHHHHHHHhcCCCEEEEEecCC
Confidence 01246898884 3333 346888999999999998876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.61 E-value=0.005 Score=49.89 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=70.6
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-------
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------- 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------- 243 (351)
..+..++.+||-+|||. |..+..+++.....+|+++|.++.-++.|++. ...... +..+.+
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIAD-LSLDTPLHEQIAA 88 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEE-TTSSSCHHHHHHH
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEE-eCCCcCHHHHHHH
Confidence 34667799999999998 66777777664456899999999999999874 122222 221111
Q ss_pred -CCCCceeeEEeccccc------cC---CChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIH------CW---SSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~------h~---~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.....+|+++-.-..+ +. ......++...+.++|||.+.+...
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 1234689998543211 11 1234679999999999999988753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.59 E-value=0.0046 Score=48.87 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CCCCc
Q 018740 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS 248 (351)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~~~ 248 (351)
..++.+||-+|+|. |.+...+++......++++|.++.-++.+++. ....++..+-+... .....
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL---------GADHVVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc---------ccceeecCcccHHHHHHHhhCCCC
Confidence 45688999999986 66666666553235889999999988888874 12223332211110 12345
Q ss_pred eeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhccCCccCCCHHHHHHHHH
Q 018740 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 325 (351)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 325 (351)
+|+|+-. .... ..++...+.|+++|++++.....+ ...+....+.... ... .....+.+++.++++
T Consensus 101 ~d~vid~-----~g~~-~~~~~a~~~l~~~G~iv~~G~~~~---~~~~~~~l~~k~~-~i~-Gs~~~~~~d~~~~l~ 166 (172)
T d1h2ba2 101 VNVAMDF-----VGSQ-ATVDYTPYLLGRMGRLIIVGYGGE---LRFPTIRVISSEV-SFE-GSLVGNYVELHELVT 166 (172)
T ss_dssp EEEEEES-----SCCH-HHHHHGGGGEEEEEEEEECCCSSC---CCCCHHHHHHTTC-EEE-ECCSCCHHHHHHHHH
T ss_pred ceEEEEe-----cCcc-hHHHHHHHHHhCCCEEEEEeCccc---ccCCHHHHHhCCc-EEE-EEEecCHHHHHHHHH
Confidence 8988843 2233 357888999999999998664322 1222222121111 111 123457777777765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.55 E-value=0.0046 Score=49.07 Aligned_cols=100 Identities=12% Similarity=0.204 Sum_probs=67.3
Q ss_pred ccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------C
Q 018740 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------F 244 (351)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------~ 244 (351)
..+..++.+||=+|||. |.++..+++.....+|+++|.++.-++.+++. .. ..++...-.+.. .
T Consensus 22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l--------Ga-~~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY--------GA-TDILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH--------TC-SEEECGGGSCHHHHHHHHT
T ss_pred HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh--------Cc-cccccccchhHHHHHHHHh
Confidence 34667788999999987 88888888874334799999999999999874 11 112221111110 1
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
....+|+|+-. ...+ ..+++..+.++|+|.+++...
T Consensus 93 ~g~G~D~vid~-----~g~~-~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 93 NGKGVDRVIMA-----GGGS-ETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECCC
T ss_pred hccCcceEEEc-----cCCH-HHHHHHHHHHhcCCEEEEEee
Confidence 23459998843 3223 346788899999999988654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.0011 Score=52.53 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=64.8
Q ss_pred cCCCCCCeEEEEcCc-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEe-cCCCC-CCCCCce
Q 018740 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL-PFASSSI 249 (351)
Q Consensus 173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~-d~~~l-p~~~~~f 249 (351)
.+..++.+||-+|+| .|.++..+++.. ..+|+++|.++..++.+++. .-. .++.. +-.+. ....+.+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l--------Ga~-~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM--------GAD-HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEEGGGTSCHHHHSCSCE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc--------CCc-EEeeccchHHHHHhhhccc
Confidence 356678999999998 477777777653 35999999999999998875 111 22221 11111 1224579
Q ss_pred eeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
|+|+..-.-.+- ..+....+.|+|+|++++...
T Consensus 93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECCC
T ss_pred ceEEEEecCCcc----chHHHHHHHhhccceEEEecc
Confidence 988864322211 114457889999999988653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.51 E-value=0.0062 Score=47.66 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC-----CCC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FAS 246 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-----~~~ 246 (351)
.+..++.+||=+|+|. |.++..+++.. ..+|+++|.++.-++.+++. .-..++..+-.+.. ...
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---------GASLTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHHS
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---------CccccccccchhHHHHHHHhhc
Confidence 4567788999999986 77777777764 36999999999999988873 11123322222210 112
Q ss_pred CceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
+.+|.|.+.. . ...+....+.|+|+|++++...
T Consensus 93 g~~~~i~~~~------~-~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 93 GAHGVLVTAV------S-NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp SEEEEEECCS------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred CCcccccccc------c-chHHHHHHHHhcCCcEEEEEEe
Confidence 3344444322 2 3457888999999999988643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.35 E-value=0.015 Score=45.97 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=65.7
Q ss_pred HHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP--- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~lp--- 243 (351)
+.+..+..++.+||=+|+|. |.+...+++.....+|+++|.+++-++.|++.- -.. ++. .+.....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G--------A~~-~in~~~~~~~~~~~ 91 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG--------ATE-CISPKDSTKPISEV 91 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT--------CSE-EECGGGCSSCHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC--------CcE-EECccccchHHHHH
Confidence 34445567799999999986 566666666643468999999999999999862 111 221 1211110
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+ +....+..+...+..+++++|.+++....
T Consensus 92 ~~~~~g~G~d~vi-----~~~g~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 92 LSEMTGNNVGYTF-----EVIGHLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp HHHHHTSCCCEEE-----ECSCCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred HHHhccccceEEE-----EeCCchHHHHHHHHHhhcCCeEEEEEEcc
Confidence 1234688887 33334444444455555666888886543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.29 E-value=0.035 Score=47.76 Aligned_cols=163 Identities=13% Similarity=0.014 Sum_probs=94.0
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC-C----
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P---- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l-p---- 243 (351)
+...+... ...|+.+|||-=.-...+ ...+...++=+|. +++++.-++.+.+.......+..++..|+.+- +
T Consensus 82 ~~~~~~~g-~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~ 158 (297)
T d2uyoa1 82 FNNAVIDG-IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALR 158 (297)
T ss_dssp HHHHHHTT-CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC-CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHH
Confidence 33444332 346777999976655444 2234456777775 77887777777665222245677788888642 1
Q ss_pred ---CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHHHHHHHHhhc--------cC
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI--------SG 310 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 310 (351)
+....--++++-+++.+++.. ..+|+.+.+...||+.+++......................... ..
T Consensus 159 ~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (297)
T d2uyoa1 159 SAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQE 238 (297)
T ss_dssp HTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------C
T ss_pred hcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHh
Confidence 223344577777888888643 58899999999999999886544321110111111111111000 00
Q ss_pred -CccCCCHHHHHHHHHHCCCeEEEE
Q 018740 311 -SYTFLSEREIEDLCRACGLVDFKC 334 (351)
Q Consensus 311 -~~~~~s~~~l~~ll~~aGf~~v~~ 334 (351)
.....+..+...+|+++||++...
T Consensus 239 ~~~~~~~~~~~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 239 LIYHDENRAVVADWLNRHGWRATAQ 263 (297)
T ss_dssp CTTCCTTCCCHHHHHTTTTEEEEEE
T ss_pred hccCCCchhhHHHHHHhCCCEEEEe
Confidence 112224457889999999987653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.27 E-value=0.024 Score=44.73 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=69.8
Q ss_pred HHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
+.+..+..++.+||=+|||. |.++..+++......|+.+|.++.-++.+++. .-...+...-.+..
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~~~ 90 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATDCLNPRELDKPVQDV 90 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHH
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCcccCCccchhhhhhh
Confidence 34445667889999999997 88888888875445899999999988888874 11122221111110
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
...+.+|+|+ +....+ ..+.+..+.+++| |.+++.-.
T Consensus 91 ~~~~~~~G~d~vi-----e~~G~~-~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 91 ITELTAGGVDYSL-----DCAGTA-QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHHHHTSCBSEEE-----ESSCCH-HHHHHHHHTBCTTTCEEEECCC
T ss_pred HhhhhcCCCcEEE-----Eecccc-hHHHHHHHHhhcCCeEEEecCC
Confidence 1235689887 333333 4588899999996 99988654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.22 E-value=0.0034 Score=52.77 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=62.8
Q ss_pred HHHhccCCCC--CCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC-CC-----CCCCeEEEEecC
Q 018740 168 LMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-----PKENFLLVRADI 239 (351)
Q Consensus 168 ~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-g~-----~~~~i~~~~~d~ 239 (351)
.+.+.+...+ ..+|||.-+|.|..+..++..|. +|+++|-++.+....++.+.... +. ...+++++.+|.
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 3444444332 34899999999999999999986 99999999987666665443320 00 023789999997
Q ss_pred CC-CCCCCCceeeEEecccccc
Q 018740 240 SR-LPFASSSIDAVHAGAAIHC 260 (351)
Q Consensus 240 ~~-lp~~~~~fD~V~~~~vl~h 260 (351)
.+ +.-...+||+|+.--.+.+
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCcc
Confidence 44 3323567999997665543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.21 E-value=0.026 Score=44.45 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=63.3
Q ss_pred HHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
+.+..+..++.+||=+|||. |.+...+++.....+|+++|.++.-++.+++. .-..++...-.+..
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~ 89 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEV 89 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHH
Confidence 34455677899999999986 55666666653245899999999999999874 11222221111110
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~L-kpgG~li~~~~ 286 (351)
...+.+|+|+- ....+. .+.+....+ +++|.+++.-.
T Consensus 90 ~~~~~~~G~d~vid-----~~g~~~-~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 90 ICEKTNGGVDYAVE-----CAGRIE-TMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp HHHHTTSCBSEEEE-----CSCCHH-HHHHHHHTBCTTTCEEEECCC
T ss_pred HHHhcCCCCcEEEE-----cCCCch-HHHHHHHHHHHhcCceEEEEE
Confidence 12346888884 333343 455555555 55688887654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.022 Score=44.73 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHhccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
+.+..+..++.+||-.|+ |.|..+..+++.. ..+|++++-+++-.+.+++. | .. .++ |..+..
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~-----G--a~--~vi--~~~~~~~~~ 87 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN-----G--AH--EVF--NHREVNYID 87 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-----T--CS--EEE--ETTSTTHHH
T ss_pred HHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc-----C--cc--ccc--ccccccHHH
Confidence 344456678899999996 4577777777764 35999999898888888763 1 11 222 222211
Q ss_pred -----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+..-. ...++...+.|+|+|.++...
T Consensus 88 ~i~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 88 KIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred HhhhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 13456999995432 346888899999999998853
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.07 E-value=0.008 Score=50.24 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=51.2
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 222 (351)
-|..+.+.+..... .++..|||.=||+|..+.+..+.+. +.+|+|+++..++.|++++.
T Consensus 197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence 45677777777765 4578999999999999999999887 99999999999999999875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.98 E-value=0.02 Score=44.78 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------
Q 018740 172 YLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (351)
Q Consensus 172 ~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------ 243 (351)
..+..++.+||=+|+ | .|.++..+++......|+++|.++.-++.+++. ... ..+..+-.+..
T Consensus 22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GAD-YVINASMQDPLAEIRRI 92 (170)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHH
T ss_pred HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc--------CCc-eeeccCCcCHHHHHHHH
Confidence 346677899999997 3 466666666653345999999999988888874 111 22332222210
Q ss_pred CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...+.+|+|+.... -...++...+.|+|||.+++....
T Consensus 93 ~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 93 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhcccchhhhcccc------cchHHHhhhhhcccCCEEEEeccc
Confidence 12356999885322 234567788999999999887543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.74 E-value=0.0067 Score=52.42 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
.-|..+++.+...... ++..|||.=||+|..+.+..+.+. +.+|+|++++.++.|++++.+.
T Consensus 234 ~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 234 RFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred cCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHhc
Confidence 3466778887777654 688999999999999999999987 9999999999999999886543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.23 E-value=0.043 Score=42.68 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=59.8
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+|+=||||. | .++..|.+.++..+|+|+|.++..++.+++. ..+.....+.... .+...|+|+..--
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence 578899986 4 4677788888777999999999999998874 1222222232222 2345788885433
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
.+ .....+.++...++++..++-
T Consensus 72 ~~---~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 72 VR---TFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp HH---HHHHHHHHHHHHSCTTCEEEE
T ss_pred ch---hhhhhhhhhhccccccccccc
Confidence 22 234678888889988766554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.15 E-value=0.0082 Score=47.02 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEec
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 255 (351)
++.+|+=||+|. |..+...+... ..+|+.+|.+++.+++.+..... +++....+-+.+.-.-...|+|+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEEe
Confidence 467999999997 66666666653 45999999999999888876543 3455544433332112358999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 256 AAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 256 ~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
-.+---+-|.-.-+++.+.+|||.+++=
T Consensus 103 alipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 103 VLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred eecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 6654444555556788999999998764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.14 E-value=0.025 Score=47.71 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred CcHHHHHHHHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
-|..+.+.+..... .++..|||.=+|+|..+.+..+.+. +.+|+|+++...+.|++++...
T Consensus 192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence 45677777777664 4688999999999999999999987 9999999999999999998764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.93 E-value=0.13 Score=40.01 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=63.5
Q ss_pred HHHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEE-ecCCCC---
Q 018740 168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL--- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~-~d~~~l--- 242 (351)
.+.+..+..++.+||=+|+|. |.....+++.....+|+++|.++.-.+.+++.- ....+. .+..+.
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~~ 89 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG---------ATECVNPQDYKKPIQE 89 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC---------CeeEEecCCchhHHHH
Confidence 344555677899999999975 445555555544569999999999999888741 111221 122211
Q ss_pred ---CCCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
-...+.+|+|+-... .+ ..++.....++++ |.+++...
T Consensus 90 ~~~~~~~~G~D~vid~~G-----~~-~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 90 VLTEMSNGGVDFSFEVIG-----RL-DTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp HHHHHTTSCBSEEEECSC-----CH-HHHHHHHHHBCTTTCEEEECSC
T ss_pred HHHHHhcCCCCEEEecCC-----ch-hHHHHHHHHHhcCCcceEEecC
Confidence 012356899884332 22 3466677777776 55555443
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.19 Score=43.21 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=53.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCC---CCCceeeEEe
Q 018740 179 GNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA 254 (351)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~---~~~~fD~V~~ 254 (351)
.+|+|+-||.|.+...+.+.|...+ +.++|+++.+++..+.+ .++..++..|+.++.. +...+|+++.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n--------~~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN--------FPHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH--------CCCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 4799999999999999988875333 67899999988887765 4555677788876642 2235899986
Q ss_pred cccc
Q 018740 255 GAAI 258 (351)
Q Consensus 255 ~~vl 258 (351)
..-.
T Consensus 75 gpPC 78 (343)
T d1g55a_ 75 SPPC 78 (343)
T ss_dssp CCC-
T ss_pred eccc
Confidence 5443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.10 E-value=0.28 Score=38.24 Aligned_cols=101 Identities=9% Similarity=-0.071 Sum_probs=68.2
Q ss_pred HHHhccCCCCCCeEEEEcCcc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCC---
Q 018740 168 LMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--- 242 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~l--- 242 (351)
.+.+..+..++.+||=.|++. |..+..+++.. ..+|++++-+++..+.+++. . .-..+.-+-++.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~--------G-a~~vi~~~~~~~~~~ 89 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI--------G-FDAAFNYKTVNSLEE 89 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------T-CSEEEETTSCSCHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh--------h-hhhhcccccccHHHH
Confidence 455666777899999888754 66777777774 45999999999888887763 1 112222222211
Q ss_pred ---CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
......+|+|+- ++. ...+++..+.|+|+|.++..-
T Consensus 90 ~~~~~~~~Gvd~v~D-----~vG--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 90 ALKKASPDGYDCYFD-----NVG--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HHHHHCTTCEEEEEE-----SSC--HHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHhhcCCCceeEE-----ecC--chhhhhhhhhccCCCeEEeec
Confidence 012456999883 332 356889999999999998854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.83 E-value=0.16 Score=38.98 Aligned_cols=96 Identities=21% Similarity=0.134 Sum_probs=61.5
Q ss_pred cCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC-C----C-CC
Q 018740 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L----P-FA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~-l----p-~~ 245 (351)
.+..++.+||=.|+|. |.....+++.. ..+|+++|.++.-++.+++. . ...+...... . . ..
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~--------G--a~~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL--------G--ADLVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT--------T--CSEEECTTTSCHHHHHHHHH
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc--------C--cceecccccchhhhhccccc
Confidence 3566788999999987 55666666653 45999999999999888773 1 1122221111 1 0 11
Q ss_pred CCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
.+.+|+|++. + . ...+....+.|+|+|.+++...
T Consensus 92 ~~~~~~v~~~-~-----~-~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 92 GGVHAAVVTA-V-----S-KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SSEEEEEESS-C-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCceEEeec-C-----C-HHHHHHHHHHhccCCceEeccc
Confidence 3344444432 1 2 3568899999999999988654
|
| >d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: PhnA zinc-binding domain domain: Hypothetical protein PA0128, N-terminal domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.74 E-value=0.016 Score=32.92 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=23.3
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
=.||.|++...-.. ...+.|+.|++.+...
T Consensus 4 P~CP~C~seytYed----------g~l~vCPeC~hEW~~~ 33 (38)
T d2akla2 4 PPCPQCNSEYTYED----------GALLVCPECAHEWSPN 33 (38)
T ss_dssp CCCTTTCCCCCEEC----------SSSEEETTTTEEECTT
T ss_pred CcCCCCCCcceEcC----------CCEEECCcccCcCCcc
Confidence 35999999876654 4688999999887543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.65 E-value=0.14 Score=39.95 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=64.8
Q ss_pred HHHhccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 168 LMKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+.+..+..++.+||=.|. |.|.++..+++.. +.++++++-+++-.+.+++. ... ..+...-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~--------Ga~-~vi~~~~~~~~~~ 85 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL--------GVE-YVGDSRSVDFADE 85 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT--------CCS-EEEETTCSTHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc--------ccc-ccccCCccCHHHH
Confidence 3345556677889998773 3477777777763 34899988888777777653 111 12221111210
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEe
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~ 285 (351)
.....+|+|+..-. . ..++++.+.|+++|+++...
T Consensus 86 v~~~t~~~g~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 86 ILELTDGYGVDVVLNSLA-----G--EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp HHHHTTTCCEEEEEECCC-----T--HHHHHHHHTEEEEEEEEECS
T ss_pred HHHHhCCCCEEEEEeccc-----c--hHHHHHHHHhcCCCEEEEEc
Confidence 12457999996443 2 35788889999999998853
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.61 E-value=0.41 Score=36.83 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=61.1
Q ss_pred HHHhccCCCCCCeEEEEcCccC-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 168 LMKGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
.+.+..+..++.+||=+|+|.+ .....+++......|+++|.+++-++.+++. .-..++..+-++..
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~---------GAd~~in~~~~~~~~~~ 89 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQ 89 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc---------CCcEEEcCCCcchhHHH
Confidence 3444556778999999999884 4444455554356899999999999998874 11223322111110
Q ss_pred ----CCCCceeeEEeccccccCCChHHHHHHHHhcccCC-cEEEEEee
Q 018740 244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (351)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~Lkpg-G~li~~~~ 286 (351)
.....+|+|+- ..... ..+......+++| |++++...
T Consensus 90 ~~~~~~~~G~d~vid-----~~G~~-~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 90 VLSKMTNGGVDFSLE-----CVGNV-GVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HHHHHHTSCBSEEEE-----CSCCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHhhccCCcceeee-----ecCCH-HHHHHHHHHhhCCCcceeEEEe
Confidence 11346888873 33233 3456666666665 55544333
|
| >d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcription initiation factor TFIIB, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.024 Score=35.90 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=24.5
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
..+..+.||.|++.-.... ...+.+.|..||.+.
T Consensus 7 ~~~~~~~Cp~Cgs~~ii~D--------~~~Ge~vC~~CG~Vl 40 (58)
T d1dl6a_ 7 DALPRVTCPNHPDAILVED--------YRAGDMICPECGLVV 40 (58)
T ss_dssp CCCSCCSBTTBSSSCCEEC--------SSSCCEECTTTCCEE
T ss_pred ccccccCCCCCCCCCEEEE--------CCCCcEecccCCCEe
Confidence 3456788999999743322 345889999999764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.22 Score=38.62 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=66.6
Q ss_pred HHhccCCCCCCeEEEEcCc--cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---
Q 018740 169 MKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--- 243 (351)
+.+..+..++.+||=.|+| .|.++..+++.. ..+|++++.|++-.+.+++. | .+ ..+..+-.++.
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l-----G--a~--~vi~~~~~d~~~~v 89 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-----G--AW--QVINYREEDLVERL 89 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-----T--CS--EEEETTTSCHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc-----C--Ce--EEEECCCCCHHHHH
Confidence 4444556778899999765 467777777763 35999999999999888875 1 11 12221112211
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
.....+|+|+....-+ .+....+.|+++|.+++....
T Consensus 90 ~~~t~g~g~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGRD-------TWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp HHHTTTCCEEEEEECSCGG-------GHHHHHHTEEEEEEEEECCCT
T ss_pred HHHhCCCCeEEEEeCccHH-------HHHHHHHHHhcCCeeeecccc
Confidence 1245789888543322 367888999999998775443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.22 E-value=0.18 Score=38.66 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=55.3
Q ss_pred eEEEEcCcc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCCCCceeeEEeccc
Q 018740 180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (351)
Q Consensus 180 ~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 257 (351)
+|.=||+|. +.++..|.+.+. +|+++|.+++.++.+++. ..+.....+.+.+ ...|+|+..--
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~---------~~~~~~~~~~~~~----~~~DiIilavp 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER---------QLVDEAGQDLSLL----QTAKIIFLCTP 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG----TTCSEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh---------hccceeeeecccc----cccccccccCc
Confidence 567788884 346677777777 999999999888887763 1121222233322 35798885322
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEE
Q 018740 258 IHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 258 l~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
.. .....++++...|+++-+++-
T Consensus 67 ~~---~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 67 IQ---LILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HH---HHHHHHHHHGGGSCTTCEEEE
T ss_pred Hh---hhhhhhhhhhhhcccccceee
Confidence 11 234778888888888876654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.86 E-value=0.33 Score=37.85 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=66.0
Q ss_pred HHhccCCCCCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC-CC-CCC
Q 018740 169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SR-LPF 244 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~-~~-lp~ 244 (351)
+...-...++.+||=-|. |.|.++..+++.. ..+|+++--+++-.+.+++.- .+.+--...+. +. ...
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lG-------a~~vi~~~~~~~~~~~~~ 94 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLG-------AKEVLAREDVMAERIRPL 94 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTT-------CSEEEECC---------C
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcc-------cceeeecchhHHHHHHHh
Confidence 333444555788999885 4567888888764 459999998888888888641 11111111111 11 122
Q ss_pred CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
..+.+|+|+-.-. . ..+.+..+.|+|||+++......
T Consensus 95 ~~~gvD~vid~vg-----g--~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 95 DKQRWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp CSCCEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSCCS
T ss_pred hccCcCEEEEcCC-----c--hhHHHHHHHhCCCceEEEeeccc
Confidence 3567999884322 1 24788999999999999877654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.79 E-value=0.37 Score=37.07 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=65.1
Q ss_pred HHhccCCCCCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----
Q 018740 169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---- 243 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---- 243 (351)
+.+..+..++.+||=+|||. |.++..+++......|+++|.++.-++.+++.= - ..++..+-..-.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG--------a-~~~i~~~~~~~~~~~~ 90 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG--------A-TECINPQDFSKPIQEV 90 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT--------C-SEEECGGGCSSCHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC--------C-cEEEeCCchhhHHHHH
Confidence 44455677899999999874 556666666533458999999999999888751 1 112211111110
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEee
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+.+|+|+-. .. ....++.....+++||.+++...
T Consensus 91 ~~~~~~~g~D~vid~-----~G-~~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 91 LIEMTDGGVDYSFEC-----IG-NVKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp HHHHTTSCBSEEEEC-----SC-CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHcCCCCcEeeec-----CC-CHHHHHHHHHhhcCCceeEEEEe
Confidence 123568998843 22 23567888999999987766543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.76 E-value=0.31 Score=42.74 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=51.0
Q ss_pred cCCCCCCeEEEEcCccCHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC
Q 018740 173 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (351)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~ 245 (351)
+...+...|+|+|+|+|.++..+.+.. ...+++-+|.|+.+.+.-++.+... .++.++ .+++.+|.
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~-~~~~~~~~- 147 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE- 147 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC-
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceec-cChhhccc-
Confidence 343344589999999999988775542 2346899999998877777665432 455443 34544441
Q ss_pred CCceeeEEeccccccCC
Q 018740 246 SSSIDAVHAGAAIHCWS 262 (351)
Q Consensus 246 ~~~fD~V~~~~vl~h~~ 262 (351)
..-+|+++.++.-+|
T Consensus 148 --~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 148 --GPAVILANEYFDVLP 162 (365)
T ss_dssp --SSEEEEEESSGGGSC
T ss_pred --CCeEEEecccCcccc
Confidence 124566665555443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.33 E-value=0.045 Score=42.83 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=60.7
Q ss_pred cCCCCCCeEEEEcC-c-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---CCCC
Q 018740 173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASS 247 (351)
Q Consensus 173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---~~~~ 247 (351)
.+..++.+||=.|. | .|.+...+++.. +.+|++++-+++-.+.+++. | .+.+ + |..+.. ....
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l-----G--a~~~--i--~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-----G--AEEA--A--TYAEVPERAKAWG 90 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-----T--CSEE--E--EGGGHHHHHHHTT
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc-----c--ccee--e--ehhhhhhhhhccc
Confidence 45677899999884 4 377777787774 35999999998888877763 1 1111 1 222211 1235
Q ss_pred ceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.+|+|+-.. .+ .+....+.|+|+|.++..
T Consensus 91 g~D~v~d~~-----G~---~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEVR-----GK---EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEECS-----CT---THHHHHTTEEEEEEEEEC
T ss_pred ccccccccc-----ch---hHHHHHHHHhcCCcEEEE
Confidence 699988532 11 256778999999998875
|
| >d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcriptional factor SII, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.026 Score=34.42 Aligned_cols=39 Identities=21% Similarity=0.489 Sum_probs=26.1
Q ss_pred CceeCCCCCCCc-ccccCCCcccccccCCccccccccccc
Q 018740 70 NVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 70 ~~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
+.+.||.|++.- ........+.|+-....+.|.+|++.+
T Consensus 8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W 47 (50)
T d1tfia_ 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence 668999999942 112223444555666688999999765
|
| >d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: RBP9 subunit of RNA polymerase II species: Archaeon Thermococcus celer [TaxId: 2264]
Probab=91.02 E-value=0.027 Score=35.42 Aligned_cols=39 Identities=18% Similarity=0.491 Sum_probs=25.2
Q ss_pred ceeCCCCCCCc-ccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.||.|+..- ........+.++.+.-.+.|.+|++.+.
T Consensus 15 ~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr 54 (57)
T d1qypa_ 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred cCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence 36799999932 1112233445556667789999998764
|
| >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: YfgJ-like family: YfgJ-like domain: Hypothetical protein YfgJ species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.038 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=21.9
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-+.||.|+.+|.+.. +.+.|..|+..|..
T Consensus 2 ~~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~~ 30 (71)
T d2jnea1 2 ELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM 30 (71)
T ss_dssp CCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred CCcCCCccCcccccC-----------CCEehhhhhhhhee
Confidence 367999999988764 57778888766643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.71 E-value=0.15 Score=40.11 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=62.5
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCC---CCCeEEEEecCCCCC--C------
Q 018740 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP--F------ 244 (351)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~---~~~i~~~~~d~~~lp--~------ 244 (351)
++.+||=||+|. |..+...+... .+.|+.+|.++..+++.++......... ....+-..+.+..+. +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 467999999997 66666555543 4599999999999888887532220000 000000001111110 0
Q ss_pred ----CCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 018740 245 ----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG 283 (351)
Q Consensus 245 ----~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~ 283 (351)
.-...|+|+..-.+---.-|.-.-+++.+.+|||.+++=
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 012579999876655445555556788999999998774
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.98 E-value=3.4 Score=35.21 Aligned_cols=160 Identities=11% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHhccCCCCCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhC------------------CCCCC
Q 018740 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------NFPKE 230 (351)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------------g~~~~ 230 (351)
+..++...+...|+-+|||.=.....+....+...++=+|. |+.++.=++.+.+.. ....+
T Consensus 88 v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~ 166 (328)
T d1rjda_ 88 ILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG 166 (328)
T ss_dssp HHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred HHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCC
Confidence 34444444556899999999877766766666444455554 444433333222100 01135
Q ss_pred CeEEEEecCCCCC---------CCCCceeeEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEeeccCCCCCcchHHH
Q 018740 231 NFLLVRADISRLP---------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (351)
Q Consensus 231 ~i~~~~~d~~~lp---------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (351)
+..++.+|+.++. +.....-++++-.++.+++.. .++++.+.+.. |+|.+++-++.... .+..++.+
T Consensus 167 ~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~-~p~D~FG~ 244 (328)
T d1rjda_ 167 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS-QPNDRFGA 244 (328)
T ss_dssp SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC-STTCCHHH
T ss_pred CeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCC-CCCChHHH
Confidence 7888999987652 222334578888889988643 47778777776 45666666665321 12233433
Q ss_pred HHHHHHh-----hccCCccCCCHHHHHHHHHHCCCeEEE
Q 018740 300 LLRQNMM-----QISGSYTFLSEREIEDLCRACGLVDFK 333 (351)
Q Consensus 300 ~~~~~~~-----~~~~~~~~~s~~~l~~ll~~aGf~~v~ 333 (351)
.+...+. ..++-..+.+.+...+-+ .|+..+.
T Consensus 245 ~M~~nl~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~ 281 (328)
T d1rjda_ 245 IMQSNLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVI 281 (328)
T ss_dssp HHHHHHHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEE
T ss_pred HHHHHHHHhcCCCCCccccCCCHHHHHHHH--hcCCccc
Confidence 3333332 122334455666554433 3565443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.77 Score=38.15 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=71.2
Q ss_pred CCeE-EEEcCccCH---HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---------
Q 018740 178 GGNI-IDASCGSGL---FSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------- 243 (351)
Q Consensus 178 ~~~v-LDiGcG~G~---~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------- 243 (351)
|++| |=-|++.|. .+..|++. +. +|+..+.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEEecCCHHHHHHHHHHH
Confidence 4566 555665553 34555655 44 9999999999999888888776 578899999997652
Q ss_pred -CCCCceeeEEeccccccC---CC----------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIHCW---SS----------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~---~d----------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-..+..|+++.+..+.+. .+ +..+.+.+...|+++|.++....
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 113579999988765332 11 12456677888899998877654
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=89.66 E-value=0.91 Score=37.34 Aligned_cols=110 Identities=16% Similarity=0.049 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCC----------------------------------------CCeEEEEeCCHHH
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSGL----------------------------------------FSLVVALDYSENM 213 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~----------------------------------------~~~v~gvD~s~~~ 213 (351)
....+..++|--||+|.+....+-... ...++|.|+++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 334456799999999999877654210 1246799999999
Q ss_pred HHHHH---HHHhhhCCCCCCCeEEEEecCCCCCC-----CCCceeeEEecccc-ccCC----Ch----HHHHHHHHhccc
Q 018740 214 LKQCY---EFVQQESNFPKENFLLVRADISRLPF-----ASSSIDAVHAGAAI-HCWS----SP----STGVAEISRVLR 276 (351)
Q Consensus 214 ~~~a~---~~~~~~~g~~~~~i~~~~~d~~~lp~-----~~~~fD~V~~~~vl-~h~~----d~----~~~l~~i~~~Lk 276 (351)
++.|+ +++... |. ...+.+.+.|+.+... +....++|+++=-. +-+. .+ ..+...+.+++.
T Consensus 127 i~~A~~~r~n~~~A-gl-~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 127 AQAARRLRERLTAE-GG-ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHT-TS-SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHc-CC-CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 99885 455554 33 5678999999865421 23557899987432 2231 12 355556777775
Q ss_pred CCcEEEEEe
Q 018740 277 PGGVFVGTT 285 (351)
Q Consensus 277 pgG~li~~~ 285 (351)
....++++.
T Consensus 205 ~~s~~~it~ 213 (249)
T d1o9ga_ 205 AHAVIAVTD 213 (249)
T ss_dssp TTCEEEEEE
T ss_pred CCcEEEEeC
Confidence 555555543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=1.7 Score=35.59 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++.+|=.|++.|. .+..|++.|. +|+..|.++..++.+.+.+... +. ..++.++.+|+.+..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~-~~-~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSA-GY-PGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TC-SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CC-CceEEEEEccCCCHHHHHHHHHHHH
Confidence 36789999988764 5566677776 9999999999888888777665 11 246788899997632
Q ss_pred CCCCceeeEEecccccc
Q 018740 244 FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h 260 (351)
-..+..|+++.+....+
T Consensus 85 ~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHCCCSEEEECCCCCC
T ss_pred HhcCCCCEEEecccccC
Confidence 11357899987765443
|
| >d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcription initiation factor TFIIB, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.40 E-value=0.068 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=21.1
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 108 (351)
..||.|++.-.... ...+.+.|..||.+.
T Consensus 6 ~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~Vi 34 (50)
T d1pfta_ 6 KVCPACESAELIYD--------PERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEE--------TTTTEEEESSSCCBC
T ss_pred ccCcCCCCCcEEEE--------CCCCeEecccCCcEe
Confidence 57999998643322 346889999999764
|
| >d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: RBP9 subunit of RNA polymerase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=0.15 Score=33.47 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=26.5
Q ss_pred ceeCCCCCCCc-ccccCCCcccccccCCccccccccccccc
Q 018740 71 VLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 71 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
...||.|+..- ..-.....+.++.+.-.+.|.+|++.+..
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~ 63 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 63 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence 36899999831 11122344455566677899999988765
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.10 E-value=0.66 Score=39.15 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=51.7
Q ss_pred eEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEeccc
Q 018740 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAA 257 (351)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~v 257 (351)
+|||+=||.|.+...+.+.|. ..+.++|+++.+.+.-+.+ .+ -..+.+|+.++... -...|+++...-
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N--------~~-~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESN--------HS-AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHH--------CC-SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHH--------CC-CCCccCChhhCCHhHcccccEEeeccc
Confidence 699999999999999998885 2456999999888877765 23 34678999887432 246899996543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.51 E-value=1.7 Score=35.56 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
.++.+|=.|.+.|. .+..|++.|. +|+.+|.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36678888876653 3444555565 9999999999998888887765 567889999997642
Q ss_pred CCCCceeeEEecccccc
Q 018740 244 FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h 260 (351)
-.-+..|+++.+....+
T Consensus 83 ~~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 83 TEHKNVDILVNNAGITR 99 (251)
T ss_dssp HHCSCCCEEEECCCCCC
T ss_pred HhcCCceeeeecccccc
Confidence 12367999987765433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.40 E-value=2.3 Score=32.84 Aligned_cols=100 Identities=7% Similarity=-0.071 Sum_probs=60.2
Q ss_pred HhccCCCCC--CeEEEEc--CccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--
Q 018740 170 KGYLKPVLG--GNIIDAS--CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (351)
Q Consensus 170 ~~~l~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-- 243 (351)
.+..+..++ .+||=.| .|.|.++..+++......|++++-+++......+.+. .-..+...-+++.
T Consensus 21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g--------ad~vi~~~~~~~~~~ 92 (187)
T d1vj1a2 21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG--------FDAAVNYKTGNVAEQ 92 (187)
T ss_dssp HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC--------CSEEEETTSSCHHHH
T ss_pred HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc--------ceEEeeccchhHHHH
Confidence 344344444 6799877 4568999999987533467788877665554443211 1122222211111
Q ss_pred ---CCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 018740 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (351)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~ 284 (351)
.....+|+|+- .+. ...+....+.|+|+|+++..
T Consensus 93 ~~~~~~~GvDvv~D-----~vG--g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 93 LREACPGGVDVYFD-----NVG--GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHCTTCEEEEEE-----SSC--HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhccCceEEEe-----cCC--chhHHHHhhhccccccEEEe
Confidence 12356999983 332 34688999999999999864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.33 E-value=1.3 Score=36.32 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCccC---HHHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC--------
Q 018740 176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------- 243 (351)
Q Consensus 176 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gv-D~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp-------- 243 (351)
..|+++|=.|.+.| ..+..|++.|. +|+.. +-+...++.+.+.+... ..++.++.+|+.+..
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHc----CCCceEecCCCCCHHHHHHHHHH
Confidence 45778998887665 45666777776 78764 56777778877777766 568899999997531
Q ss_pred --CCCCceeeEEeccccccCCC-------------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 244 --FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 --~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
...+..|+++.+....+..+ +....+.+...++.+|.+++...
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 12357999998876655432 12456677777777777666543
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Probab=88.18 E-value=0.12 Score=28.61 Aligned_cols=25 Identities=36% Similarity=0.810 Sum_probs=17.9
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 110 (351)
-.||.|+..-.. .-+|..||+.|-.
T Consensus 3 G~CP~C~~~~a~--------------GDqCe~CG~~~~p 27 (35)
T d1pfva3 3 GTCPKCKSPDQY--------------GDNCEVCGATYSP 27 (35)
T ss_dssp EECTTTCCSSEE--------------TTBCTTTCCBCCG
T ss_pred eECCCCCCcccc--------------cccHHHcCCcCCH
Confidence 369999975332 3479999988743
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.35 E-value=0.59 Score=41.38 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=41.3
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhh
Q 018740 174 KPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQE 224 (351)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (351)
...++..++|||+-.|..+..+++.. ...+|+++|+++...+..++++...
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 34567799999999999888776542 2358999999999999999887654
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=87.16 E-value=0.19 Score=27.84 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=18.4
Q ss_pred eeCCCCCCCcccccCCCcccccccCCcccccccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 111 (351)
-.||.|+..-. ..-+|..|++.|-..
T Consensus 3 G~CP~C~~~~a--------------~GDqCe~CG~~~~p~ 28 (35)
T d1rqga3 3 GTCPYCGAEDQ--------------KGDQCEVCGRPLTPE 28 (35)
T ss_dssp SBCSSSCCSCC--------------CTTTCSSSCCCCCTT
T ss_pred EECCCCCCCcc--------------cCcchhhcCCccCHH
Confidence 36999997532 345799999887543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=2.5 Score=32.51 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCC--CCCCCCceeeE
Q 018740 177 LGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPFASSSIDAV 252 (351)
Q Consensus 177 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~--lp~~~~~fD~V 252 (351)
++.+||=.|. |.|.++..+++.. +.+|+++.-+++..+.+++.-. + .++.-+-.+ -.+....+|.|
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGa-------d--~vi~~~~~~~~~~l~~~~~~~v 100 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA-------S--RVLPRDEFAESRPLEKQVWAGA 100 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE-------E--EEEEGGGSSSCCSSCCCCEEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcc-------c--cccccccHHHHHHHHhhcCCee
Confidence 3457776663 3567778887774 4599999999988888876411 1 122222111 12345667887
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
+ +.+. ...+.+..+.|+++|+++..-..
T Consensus 101 v-----D~Vg--g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 101 I-----DTVG--DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp E-----ESSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred E-----EEcc--hHHHHHHHHHhccccceEeeccc
Confidence 5 3332 24688999999999999986544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.95 E-value=1.1 Score=32.52 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=52.5
Q ss_pred eEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----CCCCceeeEE
Q 018740 180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH 253 (351)
Q Consensus 180 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp----~~~~~fD~V~ 253 (351)
+|+=+|+|. |. ++..|.+.+. .|+.+|.+++.++.+++. .++.++.+|..+.. ..-...|.++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence 566677653 33 2333444555 999999999988877653 25678899987642 1224578887
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEE
Q 018740 254 AGAAIHCWSSPS--TGVAEISRVLRPGGVF 281 (351)
Q Consensus 254 ~~~vl~h~~d~~--~~l~~i~~~LkpgG~l 281 (351)
+. ..+.. .....+.+.+.+.-++
T Consensus 71 ~~-----t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 71 AV-----TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp EC-----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred cc-----CCcHHHHHHHHHHHHHcCCceEE
Confidence 63 22332 3344555667776443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=85.39 E-value=0.77 Score=39.01 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=51.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCCCC-CCceeeEEec
Q 018740 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (351)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 255 (351)
.+.+|||+=||.|.+...|.+.|. .-+.++|+++.+++..+.+.... ..+|+.++... -..+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~----------~~~Di~~~~~~~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCC----------CcCchhcCchhhcceeeeeecc
Confidence 457999999999999999999885 24567999999999888875332 24677665422 2358999865
Q ss_pred c
Q 018740 256 A 256 (351)
Q Consensus 256 ~ 256 (351)
.
T Consensus 79 p 79 (327)
T d2c7pa1 79 F 79 (327)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.25 E-value=3.4 Score=33.56 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++++|=.|++.|. .+..|++.|. +|+.+|.+++.++.+.+.+... ...++.++.+|+.+..
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEK---YGVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46789999987763 5666777776 9999999988777766655433 1457888999987532
Q ss_pred CCCCceeeEEeccccccCCC-------------------hHHHHHHHHhccc--CCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLR--PGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~~~Lk--pgG~li~~~~ 286 (351)
-.-+..|+++.+..+.+... +-.+.+.+.+.|+ .+|.++....
T Consensus 79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S 142 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS 142 (251)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence 11257999998765433321 1244556666664 3567666544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.90 E-value=3.5 Score=33.80 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=70.5
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC---------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s-~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp--------- 243 (351)
.++++|=.|++.|. .+..|++.|. +|+..|.+ ++.++...+.+... ..++.++.+|+.+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHHH
Confidence 46788988887763 5667777776 99999886 56666666666665 567889999987631
Q ss_pred -CCCCceeeEEeccccccCCC-------------------hHHHHHHHHhcccCCcEEEEEee
Q 018740 244 -FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTY 286 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~~~LkpgG~li~~~~ 286 (351)
-..+..|+++.+........ +....+.+.+.|+.+|..++...
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 11256899987765443321 12446677778888877766544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=84.87 E-value=1.4 Score=33.59 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCCeEEEEcC--ccCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecC--CCC-CCCCCceee
Q 018740 177 LGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL-PFASSSIDA 251 (351)
Q Consensus 177 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~--~~l-p~~~~~fD~ 251 (351)
++.+||=-|. |-|.++..+++.. ..+|+++.-+++-.+.+++.- .+.+ +...|. ... ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lG-------ad~v-i~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLG-------ASEV-ISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHT-------CSEE-EEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhc-------ccce-EeccchhchhhhcccCCCceE
Confidence 4557887774 4577888888773 359999999988888887751 1222 222221 111 223467999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEeecc
Q 018740 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (351)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~~ 288 (351)
|+- ++. ...+.+..+.|+|+|+++..-...
T Consensus 94 vid-----~vg--g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 94 AVD-----PVG--GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEE-----SCC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred EEe-----cCc--HHHHHHHHHHhccCceEEEeeccC
Confidence 873 332 246789999999999998865543
|
| >d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins domain: Endonuclease VIII species: Escherichia coli [TaxId: 562]
Probab=84.11 E-value=0.12 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=19.7
Q ss_pred eeCCCCCCCcccccCCCcccccccCCccccccccc
Q 018740 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (351)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 106 (351)
..||.|+.++..... .....+.|+.|.+
T Consensus 13 ~pC~~C~~~I~~~~~-------~gR~t~~Cp~CQ~ 40 (40)
T d1k3xa3 13 EPCERCGSIIEKTTL-------SSRPFYWCPGCQH 40 (40)
T ss_dssp SBCTTTCCBCEEEEE-------TTEEEEECTTTCC
T ss_pred CccCcCCCEEEEEEE-------CCCCCEEChhhCC
Confidence 569999997755432 2346788999963
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.98 E-value=2.2 Score=34.69 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
.|+.+|=-|++.|. ++..+++.|. +|+.+|.+++-++...+.+... ..++..+.+|+.+..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 47788888988764 6677777877 9999999999888888877765 578999999997652
Q ss_pred CCCCceeeEEeccccccC
Q 018740 244 FASSSIDAVHAGAAIHCW 261 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~ 261 (351)
-..+..|+++.+..+.+.
T Consensus 80 ~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHTCCCSEEEECCCCCCC
T ss_pred HHcCCCceeEeecccccc
Confidence 124679999987665444
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.76 E-value=2.2 Score=34.88 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=58.5
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++++|=.|+..|. .+..+++.|. +|+.+|.++..++.+.+.+... ...+.++.+|+.+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~ 78 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA 78 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHH
Confidence 47799999987763 5566777776 9999999998888888877766 577888999987542
Q ss_pred -CCCCceeeEEecccccc
Q 018740 244 -FASSSIDAVHAGAAIHC 260 (351)
Q Consensus 244 -~~~~~fD~V~~~~vl~h 260 (351)
..++..|+++.+..+.+
T Consensus 79 ~~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 79 HVFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HHTTSCCCEEEECCCCCC
T ss_pred HHhCCCcEEEeccccccc
Confidence 11356888887655543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.11 E-value=3.1 Score=33.64 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC------CCCC
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS 247 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp------~~~~ 247 (351)
.++++|=.|++.|. .+..|++.|. +|+.+|.+++.++...+. ..++..++.|+.+.. -.-+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHhC
Confidence 47899999988763 5566777776 999999998877766554 356788889986531 1235
Q ss_pred ceeeEEecccccc
Q 018740 248 SIDAVHAGAAIHC 260 (351)
Q Consensus 248 ~fD~V~~~~vl~h 260 (351)
+.|+++.+..+.+
T Consensus 76 ~iDilVnnAg~~~ 88 (244)
T d1pr9a_ 76 PVDLLVNNAAVAL 88 (244)
T ss_dssp CCCEEEECCCCCC
T ss_pred CceEEEecccccc
Confidence 7999997765543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=82.43 E-value=3 Score=34.10 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=56.8
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++++|=.|.+.|. .+..|++.|. +|+.+|.+++.++.+.+.+... ..++..+.+|+.+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 47788988987663 5667777776 9999999999999888887765 567889999987532
Q ss_pred CCCCceeeEEeccc
Q 018740 244 FASSSIDAVHAGAA 257 (351)
Q Consensus 244 ~~~~~fD~V~~~~v 257 (351)
-.-+..|+++.+..
T Consensus 78 ~~~g~iDilVnnaG 91 (260)
T d1zema1 78 RDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCCCeehhhhc
Confidence 11257999887644
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=82.14 E-value=1.4 Score=34.26 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=61.0
Q ss_pred CeEEEEcCcc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhh------CCCCC--------CCeEEEEecCCCC
Q 018740 179 GNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPK--------ENFLLVRADISRL 242 (351)
Q Consensus 179 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~g~~~--------~~i~~~~~d~~~l 242 (351)
.+|-=||+|+ |. ++..++..|. +|+.+|++++.++.+.+++... .+... .++. ...+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-cccccccc
Confidence 4688899986 44 3445566666 9999999999998887765422 00000 0121 12222222
Q ss_pred CCCCCceeeEEeccccccCCChHHHHHHHHhcccCCcEEEEEeec
Q 018740 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (351)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~~~LkpgG~li~~~~~ 287 (351)
...|+|+- .+.|.+.-...+++++.+.++|+-++.-.+..
T Consensus 82 ----~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~ 121 (186)
T d1wdka3 82 ----GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTST 121 (186)
T ss_dssp ----GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred ----cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence 24577763 22233333458899999999998887765544
|
| >d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: RNA polymerase subunits family: RBP12 subunit of RNA polymerase II domain: RBP12 subunit of RNA polymerase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.14 E-value=0.33 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceeCCCCCCCcccccCCCcccccccCCcccccccccccc
Q 018740 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (351)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 109 (351)
.+.|-.|+....+.. ...++|..||+...
T Consensus 4 ~YiCgeCg~~~~l~~----------~d~irCreCG~RIl 32 (46)
T d1twfl_ 4 KYICAECSSKLSLSR----------TDAVRCKDCGHRIL 32 (46)
T ss_dssp CEECSSSCCEECCCT----------TSTTCCSSSCCCCC
T ss_pred EEEcccCCCceEeCC----------CCcEEeccCCcEEE
Confidence 478999999766544 46899999998654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.72 E-value=2.6 Score=34.26 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
.|+.+|=.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+... ....++.++.+|+.+..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQ--FEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT--SCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--cCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 36788888987663 4566667776 9999999998888877766543 11357888999997642
Q ss_pred CCCCceeeEEeccccccCCCh
Q 018740 244 FASSSIDAVHAGAAIHCWSSP 264 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~ 264 (351)
-.-+..|+++.+.......+.
T Consensus 78 ~~~G~iDilVnnAg~~~~~~~ 98 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNNEKNW 98 (254)
T ss_dssp HHHSCCCEEEECCCCCCSSSH
T ss_pred HHcCCcCeecccccccccccc
Confidence 112579999988776655443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=6.3 Score=31.63 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=65.7
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++++|=-|.+.|. .+..+++.|. +|+..|.+++.++...+.+. .+...+.+|+.+..
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhh
Confidence 46678888877663 5566677776 99999999988877766543 35677889987531
Q ss_pred CCCCceeeEEeccccccCCC-------------------hHHHHHHHHhccc--CCcEEEEEee
Q 018740 244 FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLR--PGGVFVGTTY 286 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~~~Lk--pgG~li~~~~ 286 (351)
-.-+..|+++.+....+... +-.+.+.+.+.|+ .+|.++....
T Consensus 74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS 137 (243)
T d1q7ba_ 74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS 137 (243)
T ss_dssp HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence 12357999997755443321 1133455555553 4687776653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.49 E-value=2.6 Score=34.68 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=57.6
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhhCCCCCCCeEEEEecCCCCC----------
Q 018740 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (351)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~g~~~~~i~~~~~d~~~lp---------- 243 (351)
+++++|=.|++.|. .+..|++.|. +|+.+|.+++.++.+.+.+... +....++..+.+|+.+..
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc-CCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46788888887663 5566777776 9999999999998888877665 333457899999987632
Q ss_pred CCCCceeeEEecccc
Q 018740 244 FASSSIDAVHAGAAI 258 (351)
Q Consensus 244 ~~~~~fD~V~~~~vl 258 (351)
-.-+..|+++.+...
T Consensus 81 ~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCceEEEeCCcc
Confidence 112578999876443
|
| >d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: C2HC finger domain: Cell growth regulating nucleolar protein LyaR species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.26 E-value=0.097 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.462 Sum_probs=21.2
Q ss_pred cCCCceeCCCCCCCcccccCCCcccccccCCccccccc
Q 018740 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTC 104 (351)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C 104 (351)
+..-.+.|..||..+.... ++.....|.+|
T Consensus 6 s~MVfFtCn~CGEs~KK~q--------VekH~~~CR~C 35 (35)
T d1wjva1 6 SGMVFFTCNACGESVKKIQ--------VEKHVSNCRNC 35 (35)
T ss_dssp CCCCEEEESSSCCEEETTH--------HHHHHHHCTTC
T ss_pred ceEEEEEcchhHHHHhHHH--------HHHHHHhccCC
Confidence 3456789999999876654 44455678776
|